RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6980
(760 letters)
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 390 bits (1004), Expect = e-131
Identities = 185/277 (66%), Positives = 218/277 (78%), Gaps = 4/277 (1%)
Query: 277 NPAAIEFGQYEVKTWYSSPFPQEYARLPKLFLCEFCLKYTKSKAVLERHRDKCAWRHPPA 336
P+ IEFG+YE+ TWYSSP+PQEY+RLPKL+LCEFCLKY KS+ +L++H KC W HPPA
Sbjct: 12 CPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPA 71
Query: 337 TEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCH 396
EIYRK N+SVFEVDGN + YCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQND KGCH
Sbjct: 72 NEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCH 131
Query: 397 LVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLSDLG 456
LVGYFSKEKHCQQKYNVSCIM LPQYQRKGYGRFLIDFSYLLSK+EGQ G+PEKPLSDLG
Sbjct: 132 LVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPLSDLG 191
Query: 457 RVSYHAYWKSVLLEYLDTIRNQKLICIDQMCADTGLYHHDVAETLELLGMLRTKHGDSSE 516
R+SY AYWKSV+LE L + K I I ++ TG+ D+ TL L ML + +
Sbjct: 192 RLSYMAYWKSVILECLYHQND-KQISIKKLSKLTGICPQDITSTLHHLRMLDFRSD---Q 247
Query: 517 PCIVINWAIVDAHMKRLEQSKTRIKIDPECLRWTPLV 553
I+ ++ HM +L+ + + +DPECLRWTP++
Sbjct: 248 FVIIRREKLIQDHMAKLQLNLRPVDVDPECLRWTPVI 284
Score = 47.3 bits (112), Expect = 8e-06
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 55 NPAAIEFGQYEVKTWYSSPFPQEYARN 81
P+ IEFG+YE+ TWYSSP+PQEY+R
Sbjct: 12 CPSVIEFGKYEIHTWYSSPYPQEYSRL 38
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 389 bits (1000), Expect = e-131
Identities = 141/275 (51%), Positives = 182/275 (66%), Gaps = 5/275 (1%)
Query: 277 NPAAIEFGQYEVKTWYSSPFPQEYARLPKLFLCEFCLKYTKSKAVLERHRDKCAWRHPPA 336
I G YE+ WY SPFP++Y + PKL+LCE+CLKY K + H +C WR PP
Sbjct: 7 YVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPPG 66
Query: 337 TEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCH 396
EIYRK N+SV EVDG +K YCQNLCLLAKLFLDH+TLY+DVEPF+FY+LT+ D +G H
Sbjct: 67 KEIYRKSNISVHEVDGKDHKIYCQNLCLLAKLFLDHRTLYFDVEPFVFYILTEVDRQGAH 126
Query: 397 LVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLSDLG 456
+VGYFSKEK NV+CI+TLP YQR+GYG+FLI FSY LSK E G+PEKPLSDLG
Sbjct: 127 IVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSPEKPLSDLG 186
Query: 457 RVSYHAYWKSVLLEYLDTIRNQKLICIDQMCADTGLYHHDVAETLELLGMLRTKHGDSSE 516
++SY +YW VLLE L R + I + T + +D+ TL+ L M++ G +
Sbjct: 187 KLSYRSYWSWVLLENLRDFRGT--LSIKDLSQMTSITQNDIISTLQSLNMVKYWKG---Q 241
Query: 517 PCIVINWAIVDAHMKRLEQSKTRIKIDPECLRWTP 551
I + +V+ H+K + K I +D CL+W P
Sbjct: 242 HVICVTPKLVEEHLKSAQYKKPPITVDSVCLKWAP 276
Score = 46.1 bits (109), Expect = 2e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 55 NPAAIEFGQYEVKTWYSSPFPQEYARN 81
I G YE+ WY SPFP++Y +
Sbjct: 7 YVDKIHIGNYEIDAWYFSPFPEDYGKQ 33
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 384 bits (988), Expect = e-129
Identities = 138/277 (49%), Positives = 184/277 (66%), Gaps = 7/277 (2%)
Query: 277 NPAAIEFGQYEVKTWYSSPFPQEYARLPKLFLCEFCLKYTKSKAVLERHRDKCAWRHPPA 336
N I G+YE++ WY SP+P E +++ +F L+Y SK ER+R KC RHPP
Sbjct: 7 NLNRIIMGKYEIEPWYFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPPG 66
Query: 337 TEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCH 396
EIYR + +S FE+DG + + +C+NLCLL+KLFLDHKTLYYDV+PFLFY +T+ D+ G H
Sbjct: 67 NEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHH 126
Query: 397 LVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLSDLG 456
LVGYFSKEK YNV+CI+TLPQYQR GYG+ LI+FSY LSKKE + G+PEKPLSDLG
Sbjct: 127 LVGYFSKEKESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKENKVGSPEKPLSDLG 186
Query: 457 RVSYHAYWKSVLLEYLDTIRNQKLICIDQMCADTGLYHHDVAETLELLGMLRTKHGDSSE 516
+SY AYW L+ L + +QK I ID++ + T + D+ T + L +LR G +
Sbjct: 187 LLSYRAYWSDTLITLL--VEHQKEITIDEISSMTSMTTTDILHTAKTLNILRYYKG---Q 241
Query: 517 PCIVINWAIVDAHMKRLEQSKTRIKIDPECLRWTPLV 553
I +N I+D + + ++K R IDP L W P V
Sbjct: 242 HIIFLNEDILDRYNRL--KAKKRRTIDPNRLIWKPPV 276
Score = 42.3 bits (99), Expect = 3e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 55 NPAAIEFGQYEVKTWYSSPFPQEYARN 81
N I G+YE++ WY SP+P E
Sbjct: 7 NLNRIIMGKYEIEPWYFSPYPIELTDE 33
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 380 bits (978), Expect = e-127
Identities = 145/279 (51%), Positives = 189/279 (67%), Gaps = 9/279 (3%)
Query: 277 NPAAIEFGQYEVKTWYSSPFPQEYARLPKLFLCEFCLKYTKSKAVLERHRDKCAWRHPPA 336
N IE G++ +K WY SP+PQE LP L+LCEFCLKY +S L+RH KC RHPP
Sbjct: 5 NIECIELGRHRLKPWYFSPYPQELTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPPG 64
Query: 337 TEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCH 396
EIYRK +S FE+DG +NK Y QNLCLLAK FLDHKTLYYD +PFLFYV+T+ D KG H
Sbjct: 65 NEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYYDTDPFLFYVMTEYDCKGFH 124
Query: 397 LVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLSDLG 456
+VGYFSKEK + YNV+CI+TLP YQR+GYG+ LI+FSY LSK EG+ GTPEKPLSDLG
Sbjct: 125 IVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTGTPEKPLSDLG 184
Query: 457 RVSYHAYWKSVLLEYLDTIRNQKL----ICIDQMCADTGLYHHDVAETLELLGMLRTKHG 512
+SY +YW +LE L ++++ I I+++ T + DV TL+ L ++ G
Sbjct: 185 LLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKG 244
Query: 513 DSSEPCIVINWAIVDAHMKRLEQSKTRIKIDPECLRWTP 551
+ + ++ IVD H + K ++ID +CL +TP
Sbjct: 245 ---QYILTLSEDIVDGHERA--MLKRLLRIDSKCLHFTP 278
Score = 43.8 bits (103), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 NPAAIEFGQYEVKTWYSSPFPQEYARN 81
N IE G++ +K WY SP+PQE
Sbjct: 5 NIECIELGRHRLKPWYFSPYPQELTTL 31
>1bob_A HAT1, histone acetyltransferase; histone modification, acetyl
coenzyme A binding-protein; HET: ACO; 2.30A
{Saccharomyces cerevisiae} SCOP: d.108.1.1
Length = 320
Score = 55.0 bits (132), Expect = 3e-08
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 358 YCQNLCLLAKLFLDHKTLYYDVEP-FLFYVLTQNDDKGCHLVGY--------------FS 402
+ + + + LF++ + +P + Y L K L+G+ F
Sbjct: 149 MHRRVQIFSLLFIEAANYIDETDPSWQIYWLLNKKTK--ELIGFVTTYKYWHYLGAKSFD 206
Query: 403 KEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRG--TPEKPLSDLGRV 458
++ + + +S + P YQ KG+G L + ++ T E P +
Sbjct: 207 EDIDKKFRAKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDL 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 93/652 (14%), Positives = 170/652 (26%), Gaps = 252/652 (38%)
Query: 1 MEKEFLVSKKMVSKLLATDLAPGVTRKDIDLYKQAHEEATKATPLLPLAVPEQINPAAIE 60
M K L SK+ + ++ + A T + EE + V E +
Sbjct: 41 MPKSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK------FVEEVLRI---- 89
Query: 61 FGQYEVKTWYSSPFPQEY------------ARN-----TQVVSKLLATDLAPGVTRKDID 103
Y+ + SP E R+ QV +K V+R +
Sbjct: 90 --NYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------NVSR--LQ 135
Query: 104 LYKQAHEEATKATPLLPLAVPEQINPAAIEFGQ---------YEVCL---IKCC-ACNVY 150
Y + + + P + + G +VCL ++C ++
Sbjct: 136 PYLKLRQALLELRPAKNVLI----------DGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 151 Y----------HIICLQPPLERRLKVPWKCTSCESGTTEPSPAKTSPGRARASLTTSFRE 200
+ ++ + L ++ W + + + S +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLR------------IHSIQA 232
Query: 201 RKKQLKQQRLAAKGTPQKRGKRA-----------SVDMMVSEDVVSKLLAT-------DL 242
++L + K + + + ++ K+L T D
Sbjct: 233 ELRRLLKS---------KPYENCLLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDF 280
Query: 243 APGVTRKDIDLYKQA----HEEA----TKATPLLPLAVPEQ---INPAAI----EFGQYE 287
T I L + +E K P +P + NP + E +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 288 VKTWYSSPFPQEYARLPKLFLCEFCLKYTKSKAVLERHRDKCAWRHPPATEIYRK--ENL 345
+ TW + K L + PA YRK + L
Sbjct: 341 LATW------------------DNWKHVNCDK--LTTIIESSLNVLEPA--EYRKMFDRL 378
Query: 346 SVFEVDGN---QNKFYCQNLCLLAKLFLDHKTLYYDVEPFL----FYVLTQNDDK----G 394
SVF + LL+ ++ D DV + Y L + K
Sbjct: 379 SVFPPSAHIPTI---------LLSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 395 CHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLSD 454
+ Y + + +Y + R ++D Y + K D
Sbjct: 428 IPSI-YLELKVKLENEYAL---------HRS-----IVD-HYNIPKT--------FDSDD 463
Query: 455 LGRVSYHAYWKSVLLEYLDTIRNQKLICIDQMCADTGLYHHDVAETLELLGMLRTKHGDS 514
L Y+ S ++ G +H E E + + R D
Sbjct: 464 LIPPYLDQYFYS----HI------------------G-HHLKNIEHPERMTLFRMVFLD- 499
Query: 515 SEPCIVINWAIVDAHMKRLEQSKTRIKIDPECLRWTPLVSHI-----VNPYK 561
+ LEQ KI + W S + + YK
Sbjct: 500 ------FRF---------LEQ-----KIRHDSTAWNASGSILNTLQQLKFYK 531
Score = 52.5 bits (125), Expect = 5e-07
Identities = 48/328 (14%), Positives = 92/328 (28%), Gaps = 110/328 (33%)
Query: 348 FEVDGNQNKFYCQNLCLLAKLFLDH--KTL-YYDVEPFLFYVLTQNDDKGCHLVGYFSKE 404
FE ++++ +++ +F D DV+ +L++ + H++
Sbjct: 9 FET--GEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAV 61
Query: 405 KHCQQKYNVSCIMTLPQYQRKGYGRFL-----IDFSYLLSK------------------- 440
+ TL Q + +F+ I++ +L+S
Sbjct: 62 ---SGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 441 ----KEGQRGTP-----EKPLSDL----------GRVSYHA---YWKSVLLEYLDTIRNQ 478
+ Q +P L V K+ + LD +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSY 174
Query: 479 KLICIDQMCADTGLY------HHDVAETLELLGMLRTKHGDSSEPCIVINWAIVDAHMK- 531
K+ C D ++ + LE+L L + I NW H
Sbjct: 175 KVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--------IDPNWTSRSDHSSN 222
Query: 532 ---RLEQSKTRI------KIDPECLRWTPLV------SHIVNPY----KTL--TKESSKP 570
R+ + + K CL LV + N + K L T+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 571 SSGGNVDAETTATETTEKEDEAETEEET 598
+ A TT + + T +E
Sbjct: 279 DF---LSAATTTHISLDHHSMTLTPDEV 303
>2p0w_A Histone acetyltransferase type B catalytic subuni; HAT1, structural
genomics, structural genomics consortium, S transferase;
HET: ACO; 1.90A {Homo sapiens}
Length = 324
Score = 50.7 bits (121), Expect = 9e-07
Identities = 17/106 (16%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 342 KENLSVFEVDGNQNKF--YCQNLCLLAKLFLDHKT-LYYDVEPFLFYVL----TQNDDKG 394
+++ D F Y + L F++ + + D E + ++++ ++
Sbjct: 139 NFTFQIYKADMTCRGFREYHERLQTFLMWFIETASFIDVDDERWHYFLVFEKYNKDGATL 198
Query: 395 CHLVGYFSKEKH----CQQKYNVSCIMTLPQYQRKGYGRFLIDFSY 436
VGY + + + + VS ++ L +Q +G+G L++ +
Sbjct: 199 FATVGYMTVYNYYVYPDKTRPRVSQMLILTPFQGQGHGAQLLETVH 244
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 46.2 bits (109), Expect = 2e-06
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 135 GQYEVCLIKCCACNVYYHIICLQPPLERRLKVPWKCTSC 173
G+ ++ C +C+ +H+ C PPL R K W C C
Sbjct: 71 GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 37.7 bits (87), Expect = 0.002
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP---WKCTSCES 175
LI C C H CL+ E ++V W+C C++
Sbjct: 26 LISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 43.5 bits (103), Expect = 5e-06
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 138 EVC--------LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGT 177
+VC LI C CN +H+ CL+P L W+C +C+ T
Sbjct: 4 KVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPAT 51
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 44.5 bits (105), Expect = 6e-06
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPAK 184
L+ C C+ YHI CL PPL + W+C C + P
Sbjct: 31 LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEA 74
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 44.3 bits (104), Expect = 1e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 140 CLIKCCACNVYYHIICLQPPLERRLKVPWKCTSC 173
L+ C C+ YH+ CL PP+ + W C C
Sbjct: 72 QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
Score = 35.0 bits (80), Expect = 0.018
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVPWKCTSC 173
L+ C C H CLQ L V C
Sbjct: 23 LVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQC 55
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 44.2 bits (104), Expect = 1e-05
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 138 EVCLIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPA 183
+ ++ C C+ YH CLQP ++ WKC +C + PS
Sbjct: 66 DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPSSG 111
Score = 40.3 bits (94), Expect = 2e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCES 175
C C +YH +CL + + W+C C+
Sbjct: 22 QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 42.6 bits (100), Expect = 1e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP---WKCTSCESGTT 178
++ C C YH +C P ++ + W C C TT
Sbjct: 23 MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-05
Identities = 84/530 (15%), Positives = 146/530 (27%), Gaps = 185/530 (34%)
Query: 316 TKSKAVLERHRDKCAWRHPPATEIYRKEN--LSVFEVDGNQNKFYCQNLCLLAKLFLDHK 373
T S + + +++ P TE + ++ + E L+ K FL +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--------------LVGK-FLGY- 67
Query: 374 TLYYDVEP----------------FLFYVLTQNDDKGCH-LVGYF--------SKEKHCQ 408
+ VEP F L ND H L K K
Sbjct: 68 -VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND---IHALAAKLLQENDTTLVKTKELI 123
Query: 409 QKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKE-----------GQRGTPEKPLSDLGR 457
+ Y + IM + +K S L GQ G + +L R
Sbjct: 124 KNYITARIMAKRPFDKKS-------NSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEEL-R 174
Query: 458 VSYHAY-------------------------------------WKSVLLE---------Y 471
Y Y W LE Y
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LENPSNTPDKDY 230
Query: 472 LDTIR-NQKLICIDQMCADTGLYHHDVAETLELLGMLRTKHGDSSEPCIVINWAIVDAHM 530
L +I + LI + Q+ H+ V T +LLG + + + +V A
Sbjct: 231 LLSIPISCPLIGVIQLA------HYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 531 KRLEQSKTR---IKIDPECLR---WTPLVSHIVNPYKTLTKESSKPSSGGNVDAETTATE 584
+ ++ + + + + + + P +L + S N E +
Sbjct: 283 --IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSP 337
Query: 585 TTEKEDEAETEEETVVKKT----KRGRKRKLSLDTDAASPVVEVT--PK-------KTRK 631
+ + + + V KT G++ ++SL + A +V V+ P+ RK
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLV-VSGPPQSLYGLNLTLRK 395
Query: 632 ESESKNTTASETTASETPCTEELDVMTPSSRKESESKN---TTA---SETTASETPCTEE 685
S SE RK S + S + +
Sbjct: 396 AKAPSGLDQSRIPFSE--------------RKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 686 LDVMTPSSSLNESGAGVPVVKKRRKFRRKKNNTGWDTPKKKKKSTNITPN 735
D++ + S N +PV G D + S +I+
Sbjct: 442 -DLVKNNVSFNAKDIQIPV---------YDTFDGSDL---RVLSGSISER 478
Score = 43.5 bits (102), Expect = 3e-04
Identities = 64/432 (14%), Positives = 117/432 (27%), Gaps = 167/432 (38%)
Query: 2 EKEFLVSK---KMVSKLLATDLAPGVTRKD-IDLYKQAHEEATKATP------LLPLAVP 51
E +L + +KLL + V K+ I Y A A + L
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 52 EQINPAAIEF-GQ-----Y--EVKTWYSS--PFPQEY-ARNTQVVSKLLATDL-APGVTR 99
AI F GQ Y E++ Y + + + + +S+L+ T L A V
Sbjct: 152 GNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 100 KDIDLYK-QAHEEATKATPLL---PLAVPEQINPAAIEFGQYEV-C---------LIKC- 144
+ +++ + + T L P++ P I I+ Y V L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCP-LI--GVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 145 -----CACNV--------------YYHII-------------CLQ--PPLERRLKVPWKC 170
+ + ++ + C + P +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED- 326
Query: 171 TSCESGTTEPSP----------------AKT----------------SP------GRARA 192
S E+ PSP KT G ++
Sbjct: 327 -SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 193 --SLTTSFRERKKQLKQQRLAAKGTPQKR---GKR--------------------ASVDM 227
L + R+ K A G Q R +R
Sbjct: 386 LYGLNLTLRKAK--------APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 228 MVSEDVVSKLL---ATDLA-PGV--TRKDIDLYKQAHEEATKATPLLPLAVPEQIN-PAA 280
++++D+V + A D+ P V T DL + ++ ++ + +
Sbjct: 438 LINKDLVKNNVSFNAKDIQIP-VYDTFDGSDL-RVLSGSISER--IVDCIIRLPVKWETT 493
Query: 281 --------IEFG 284
++FG
Sbjct: 494 TQFKATHILDFG 505
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 41.0 bits (96), Expect = 5e-05
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP----WKCTSCES 175
+ C C++ +HI CL PPL VP W C C +
Sbjct: 33 QLMCDECDMAFHIYCLDPPLS---SVPSEDEWYCPECRN 68
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 41.4 bits (97), Expect = 5e-05
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP----WKCTSCES 175
+ C C++ +HI CL PPL VP W C C +
Sbjct: 41 QLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECRN 76
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 41.0 bits (96), Expect = 5e-05
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP----WKCTSCES 175
+ C CNV YHI CL PPL++ VP W C SC++
Sbjct: 41 QLLCDECNVAYHIYCLNPPLDK---VPEEEYWYCPSCKT 76
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 40.5 bits (95), Expect = 6e-05
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPAK 184
VC LI C C +H+ CL PPL W+C+SC T + +
Sbjct: 12 AVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPR 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 41.1 bits (96), Expect = 8e-05
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCE 174
VC L+ C C +H+ C P L+ W C+ C
Sbjct: 29 RVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCH 70
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 40.0 bits (94), Expect = 9e-05
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCES 175
VC L+ C C+ YH+ CL PPL+ K W C C+
Sbjct: 13 SVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 40.8 bits (95), Expect = 1e-04
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 141 LIKCCACNVYYHIICLQPPLERRL----KVPWKCTSCESGTTEPSPAKTSPGRARA 192
L++C C+ YH C +P + + ++ W C C + G +
Sbjct: 33 LVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQKSGPSSG 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 39.7 bits (93), Expect = 1e-04
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPA 183
VC L+ C C+ YH+ CL PPL+ K W C C+ + A
Sbjct: 9 SVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVPWKCTSC 173
L+ C C YHI CL PPL W C C
Sbjct: 21 LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 38.2 bits (89), Expect = 4e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCES 175
EVC +I C C YH++CL P +E+ + W C CE
Sbjct: 15 EVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 41.3 bits (96), Expect = 5e-04
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP----WKCTSCES 175
+ C C++ +HI CL PPL VP W C C +
Sbjct: 189 QLMCDECDMAFHIYCLDPPLSS---VPSEDEWYCPECRN 224
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.10A
{Pyrococcus horikoshii} SCOP: d.108.1.1
Length = 190
Score = 37.8 bits (87), Expect = 0.006
Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 11/120 (9%)
Query: 337 TEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQND----- 391
IYR N ++ + K + +++ E Y +++
Sbjct: 22 FRIYRSTNGKYPALEWVKRKPNPNDFNGFREVYEPFLKFRLSQEFDELYTYQKDNRIIGT 81
Query: 392 ------DKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQR 445
+ + +E ++ + + P++Q KG G L++F+ + G+
Sbjct: 82 IALVYKRIKEKGIWWVPEELMNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKD 141
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu
initiative, midwest center for structural genomics,
MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Length = 162
Score = 37.1 bits (86), Expect = 0.006
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 371 DHKTLYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNV-SCIMTLPQYQRKGYGR 429
+ D+ Y+L + + + +Q + T P Y KGYG
Sbjct: 39 SQGDIQEDITKKRLYLLVHEEM----IFSMATFCMEQEQDFVWLKRFATSPNYIAKGYGS 94
Query: 430 FLIDFSYLLSKKEG 443
L + EG
Sbjct: 95 LLFHELEKRAVWEG 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.007
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 18/44 (40%)
Query: 2 EKEFLVSKKMVS--KLLATDLAPGVTRKDIDLYKQAHEEATKAT 43
EK+ L KK+ + KL A D AP + A KAT
Sbjct: 18 EKQAL--KKLQASLKLYADDSAPAL--------------AIKAT 45
Score = 29.1 bits (64), Expect = 2.7
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 37/64 (57%)
Query: 202 KKQLKQQRLAAKGTPQKRGKRASVDMMVSEDVVSKLLATDLAPGVTRKDIDLYKQAHEEA 261
K+ LK +L +AS+ KL A D AP + A
Sbjct: 19 KQALK--KL-----------QASL----------KLYADDSAPAL--------------A 41
Query: 262 TKAT 265
KAT
Sbjct: 42 IKAT 45
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 34.8 bits (80), Expect = 0.008
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 137 YEVCLIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTE 179
+I C C+ +YH C+ ++ W C C + +
Sbjct: 29 DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71
>2fl4_A Spermine/spermidine acetyltransferase; structural genomics, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP:
d.108.1.1
Length = 149
Score = 35.9 bits (83), Expect = 0.013
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 348 FEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHC 407
+V Q F L + + E Y + ++ L+GY +
Sbjct: 20 LQVFAEQQAFIESMAENLKESDQFP-----EWESAGIY----DGNQ---LIGYAMYGRWQ 67
Query: 408 QQKYNVSCIMTLPQYQRKGYGRFLI 432
+ + + ++Q +GYG+
Sbjct: 68 DGRVWLDRFLIDQRFQGQGYGKAAC 92
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 36.4 bits (83), Expect = 0.016
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 138 EVC-----LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCE 174
VC L+ C C +H+ C P L+ W C+ C
Sbjct: 6 RVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCH 47
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 34.1 bits (78), Expect = 0.016
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 140 CLIKCCACNVYYHIICLQPPLERRLKVP---WKCTSCESGTTEPS 181
++ C CN+ H C P +P W C C P+
Sbjct: 32 VILFCDMCNLAVHQECYGVP-----YIPEGQWLCRHCLQSRARPA 71
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 35.5 bits (82), Expect = 0.024
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEG 443
Y D+ L G + K Q + I Q+KG+G+ L+ + +KK G
Sbjct: 41 CYTAWAGDE----LAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96
>2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics
consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB:
2psw_A* 3tfy_A*
Length = 170
Score = 35.4 bits (82), Expect = 0.030
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 376 YYDV--EPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTL---PQYQRKGYGRF 430
Y DV L + ND VG Q IMTL Y+R G G
Sbjct: 37 YKDVLEVGELAKLAYFND----IAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTK 92
Query: 431 LIDFSYLLSKKEGQ 444
+++ + +K+G
Sbjct: 93 MLNHVLNICEKDGT 106
>2qec_A Histone acetyltransferase HPA2 and related acetyltransferases;
NP_600742.1, acetyltransferase (GNAT) family; 1.90A
{Corynebacterium glutamicum atcc 13032}
Length = 204
Score = 35.4 bits (81), Expect = 0.034
Identities = 7/66 (10%), Positives = 19/66 (28%)
Query: 378 DVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYL 437
+ P L + + ++ + + + T + G G L++
Sbjct: 93 AMLPRLVSIFGIKAAQVAWTDLSSARFHPKFPHWYLYTVATSSSARGTGVGSALLNHGIA 152
Query: 438 LSKKEG 443
+ E
Sbjct: 153 RAGDEA 158
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for
structural genomics bacillus cereus ATCC 14579, PSI;
2.39A {Bacillus cereus atcc 14579} SCOP: d.108.1.1
Length = 157
Score = 35.0 bits (81), Expect = 0.035
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
YV Q ++G + + + + I Q KG G+ L+
Sbjct: 39 TYVAKQGGS----VIGVYVLLETRPKTMEIMNIAVAEHLQGKGIGKKLLRH 85
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2,
protein structure initiative, midwest center for STR
genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB:
3f0a_A* 3k9u_A* 3ne7_A*
Length = 183
Score = 35.1 bits (81), Expect = 0.036
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 380 EPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLS 439
LF + L+G+ + K K + + P+Y K G+ L+ + +
Sbjct: 85 LDILFLGAFADST----LIGF-IELKIIANKAELLRLYLKPEYTHKKIGKTLLLEAEKIM 139
Query: 440 KKEGQR 445
KK+G
Sbjct: 140 KKKGIL 145
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 34.8 bits (80), Expect = 0.041
Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 376 YYDVEPFLFYVLTQNDDKGCHLVGYFS-----KEKH-CQQKYNVSCIMTLPQYQRKGYGR 429
+ ++ + S K C + ++ ++ +++ K G+
Sbjct: 43 EIRSYGDDHVICVIEEETSGKIAATGSVMIEKKFLRNCGKAGHIEDVVVDSRFRGKQLGK 102
Query: 430 FLIDFSYLLSKKEG 443
+++F K G
Sbjct: 103 KVVEFLMDHCKSMG 116
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.75A {Listeria innocua}
Length = 163
Score = 34.6 bits (80), Expect = 0.048
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
F VL Q D ++G+ + + + K ++ LP+ ++G G L++
Sbjct: 62 FAVLEQADK----VIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEV 108
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI
1; alpha-beta protein, structural genomics, PSI; HET:
COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Length = 180
Score = 34.7 bits (80), Expect = 0.050
Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 384 FYVLTQNDDKGCHLVGYFS-------KEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSY 436
F+ + + + GY E+ + + I +Q+ G G+ L++ +
Sbjct: 61 FFFIYFDH----EIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAI 116
Query: 437 LLSKKEGQR 445
++ + ++
Sbjct: 117 EIALERNKK 125
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha
acetylation, GCN5-N-acetyltransferase, ribosomal Pro
acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella
typhimurium} PDB: 2cnm_A* 2cns_A*
Length = 160
Score = 34.2 bits (79), Expect = 0.064
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 21/72 (29%)
Query: 380 EPFLFYVLTQNDDKGCHLVGYF-----SKEKHCQQKYNVSCIMTL---PQYQRKGYGRFL 431
E +L LT +D + + E + + P +QR+G GR L
Sbjct: 38 ERYLNLKLTADD----RMAAFAITQVVLDEAT---------LFNIAVDPDFQRRGLGRML 84
Query: 432 IDFSYLLSKKEG 443
++ + G
Sbjct: 85 LEHLIDELETRG 96
>2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A,
structural GE PSI-2, protein structure initiative; HET:
SUC COA; 3.20A {Bacillus subtilis}
Length = 163
Score = 33.5 bits (76), Expect = 0.11
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 27/132 (20%)
Query: 344 NLSVFEVDGNQNKFYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCHLVGYFSK 403
N E ++ Q L +L +L + + FY + D LV S
Sbjct: 13 NYKTLEEFKKFKEYGIQELSMLEEL---QDNIIENDSTSPFYGIYFGD----KLVARMSL 65
Query: 404 EK----------HCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQRGTPEKPLS 453
+ + Q + + LP YQ +GYGR L++F +K P+
Sbjct: 66 YQVNGKSNPYFDNRQDYLELWKLEVLPGYQNRGYGRALVEF----AKSFK------MPIR 115
Query: 454 DLGRVSYHAYWK 465
R+ +W
Sbjct: 116 TNPRMKSAEFWN 127
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 31.9 bits (72), Expect = 0.13
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVP---WKCTSCESGTTEPS 181
++ C CN+ H C P +P W C C P+
Sbjct: 42 ILFCDMCNLAVHQECYGVP-----YIPEGQWLCRHCLQSRARPA 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 33.4 bits (76), Expect = 0.15
Identities = 13/70 (18%), Positives = 20/70 (28%)
Query: 141 LIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPAKTSPGRARASLTTSFRE 200
L+ C C +H+ C P L W CT C + + +
Sbjct: 16 LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGL 75
Query: 201 RKKQLKQQRL 210
K +R
Sbjct: 76 VKLTPIDKRK 85
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 381 PFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
+ Y+ D +VG V ++ LP YQR+G G L+
Sbjct: 41 SLVIYLALDGD----AVVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLMKE 90
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel B strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Length = 158
Score = 32.8 bits (75), Expect = 0.17
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTL---PQYQRKGYGRFLID 433
+ L N+ +VG+ + + I Y+ KGY + +
Sbjct: 62 LWSLKLNEKD---IVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALA 111
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 33.2 bits (75), Expect = 0.18
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 380 EPFLFYVLTQNDDKGCHLVGYFS-KEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
+ D LVG+ ++ + + ++ ++ G L+++
Sbjct: 43 PERIAVAAVDQD----ELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNY 94
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics;
1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Length = 133
Score = 32.1 bits (73), Expect = 0.20
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 382 FLFYVLTQNDDKGC-HLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLID 433
F + ++ G ++G + I L YQ + YG +++
Sbjct: 40 FTVTLYDKDRLIGMGRVIGDGGTVFQ------IVDIAVLKSYQGQAYGSLIME 86
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic,
structur genomics, PSI-2, protein structure initiative;
HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP:
d.108.1.1 PDB: 3pgp_A*
Length = 160
Score = 32.4 bits (74), Expect = 0.24
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 380 EPFLFYVLTQNDDKGCHLVGY--FSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYL 437
E V + ++G+ F + +H + +M P + G R+LI
Sbjct: 48 ERRGSTVAVHDG----QVLGFANFYQWQHGDFCALGN-MMVAPAARGLGVARYLIGVMEN 102
Query: 438 LSKKEG 443
L++++
Sbjct: 103 LAREQY 108
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.4 bits (75), Expect = 0.30
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Query: 606 GRKRKLSLDTDAASPVVEVTPKKTRKESESKNTTASETTASETP--CTEELDVMTPSSRK 663
G+K + AA+ T SE+ + A++ P +K
Sbjct: 4 GKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKK 63
Query: 664 ESESKNTTASETTASETPCTEELDVMTPSSSLNESGAGVPVVKKRRKFRRKK 715
E + + + + P S+ + RR RRK+
Sbjct: 64 EPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKR 115
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus
solfataricus}
Length = 168
Score = 32.3 bits (74), Expect = 0.30
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 367 KLFLDHKTLYYDVEPFLFYVLTQNDDKGCHLVGY--FSKEKHCQQKYNVSC------IMT 418
F++H F+V ++ +VGY E + +++
Sbjct: 41 YFFVEH----LKEYGLAFFVAIVDN----SVVGYIMPRIEWGFSNIKQLPSLVRKGHVVS 92
Query: 419 L---PQYQRKGYGRFLID 433
+ +Y+RKG L++
Sbjct: 93 IAVLEEYRRKGIATTLLE 110
>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: MSE;
2.00A {Shigella flexneri 2A}
Length = 144
Score = 32.0 bits (73), Expect = 0.31
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 375 LYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTL---PQYQRKGYGRFL 431
+ + LF V N +VG + L P+++ +G L
Sbjct: 39 RKMNHDVSLFLVAEVNG----EVVGTV----MGGYDGHRGSAYYLGVHPEFRGRGIANAL 90
Query: 432 ID 433
++
Sbjct: 91 LN 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 30.2 bits (68), Expect = 0.37
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 142 IKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPS 181
+ C C V++H C+ L + C C + S
Sbjct: 32 LACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71
>3bln_A Acetyltransferase GNAT family; NP_981174.1, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE MRD GOL; 1.31A {Bacillus
cereus}
Length = 143
Score = 31.5 bits (72), Expect = 0.38
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
++ +++ + G+ + + + +S I+ P +R+GY L+ +
Sbjct: 42 CVIVKEDN----SISGFLTYDTNFFDCTFLSLIIVSPTKRRRGYASSLLSY 88
>1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA
KAN PAP; 1.50A {Mycobacterium tuberculosis} SCOP:
d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A*
Length = 181
Score = 31.9 bits (72), Expect = 0.40
Identities = 6/67 (8%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 371 DHKTLYYDVEPFLFYVLTQNDDK-GCHLVGYFSKEKHCQQKYN---VSCIMTLPQYQRKG 426
D ++ + L + H + + V + ++ +
Sbjct: 35 DFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQR 94
Query: 427 YGRFLID 433
L+D
Sbjct: 95 LVSALLD 101
>3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative
acetyltransferase, acetyltransferase family, structural
genomics; 2.00A {Thermoplasma acidophilum dsm 1728}
Length = 266
Score = 32.4 bits (73), Expect = 0.42
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEG 443
YVL + V EK + + P+Y+ G ++ + + +
Sbjct: 62 VYVLRVSG----RPVATIHMEKLPDGSVMLGGLRVHPEYRGSRLGMSIMQETIQFLRGKT 117
Query: 444 QR 445
+R
Sbjct: 118 ER 119
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural
genomics, PSI, protein structure initiative; 2.20A
{Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 180
Score = 31.8 bits (72), Expect = 0.44
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTL---PQYQRKGYGRFLIDF 434
+ L N+ +VG+ + + I Y+ KGY + +
Sbjct: 86 LWSLKLNEKD---IVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAA 136
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 31.3 bits (71), Expect = 0.56
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 11/55 (20%)
Query: 383 LFYVLTQNDDKGCHLVGY----FSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLID 433
Y+ L+ + FS EK N+ + PQ+++ G L
Sbjct: 66 KIYIYENEG----QLIAFIWGHFSNEKS---MVNIELLYVEPQFRKLGIATQLKI 113
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 28.9 bits (65), Expect = 0.57
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 142 IKCCACNVYYHIICLQPPLERRLKVPWKCTSCE 174
I+C C+ + H+ C + + + + C C
Sbjct: 19 IECNECHTWIHLSCAKIR-KSNVPEVFVCQKCR 50
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET:
ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
PDB: 1i1d_A* 1i21_A
Length = 160
Score = 31.3 bits (71), Expect = 0.66
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 375 LYYDVEPFLFYVLTQNDDKGCHLVGYFS-----KEKH-CQQKYNVSCIMTLPQYQRKGYG 428
D + + + D + + + K H ++ I +YQ +G G
Sbjct: 54 DNEDKKIMQYNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLG 113
Query: 429 RFLIDFSYLLSKKEG 443
+ LID + G
Sbjct: 114 KLLIDQLVTIGFDYG 128
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 31.9 bits (72), Expect = 0.69
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 365 LAKLFLDHKTLYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQR 424
A + H Y+++ V N VG + + L ++Q
Sbjct: 147 YANMVKQHIYSSYNLDDIERLVAYVNH----QPVGIVDI-IMTDKTIEIDGFGVLEEFQH 201
Query: 425 KGYGRFLIDFSYLLSKKEG 443
+G G + + ++ +
Sbjct: 202 QGIGSEIQAYVGRMANERP 220
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 30.9 bits (69), Expect = 0.76
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 144 CCA-CNVYYHIICLQPPLERRL-------KVPWKCTSCESGTTEPSPAKTSPGRARASLT 195
CC C+ + C+ L R+ W C C P P +
Sbjct: 77 CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC-----HPEPLL----DLVTACN 127
Query: 196 TSFRERKKQLKQQR 209
+ F ++ L+Q +
Sbjct: 128 SVFENLEQLLQQNK 141
Score = 27.9 bits (61), Expect = 7.7
Identities = 7/47 (14%), Positives = 12/47 (25%)
Query: 142 IKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPAKTSPG 188
+ C AC + C +C ++ S G
Sbjct: 15 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDG 61
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
genomics, PSI-2, protein structure initiative; HET: MSE;
2.52A {Vibrio parahaemolyticus}
Length = 150
Score = 30.9 bits (70), Expect = 0.76
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 384 FYVLTQNDDK--GCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKK 441
F ++ + D GC + +S+E+ ++C+ P Y+ G L+++ SK
Sbjct: 45 FTIIEK-DGLIIGCAALYPYSEERKA----EMACVAIHPDYRDGNRGLLLLNYMKHRSKS 99
Query: 442 EG 443
E
Sbjct: 100 EN 101
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 31.1 bits (70), Expect = 0.79
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 378 DVEPFLFYVLTQNDDK--GCHLVGYFSKEKH-CQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
+ ++ V + + K H C ++ V ++ + + K G+ L+
Sbjct: 81 SGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLST 140
Query: 435 SYLLSKKEG 443
LLSKK
Sbjct: 141 LTLLSKKLN 149
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative; 1.85A {Clostridium difficile}
Length = 174
Score = 30.9 bits (69), Expect = 0.90
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 3/117 (2%)
Query: 566 ESSKPSSGGNVDAETTATETTEKEDEAETEEE---TVVKKTKRGRKRKLSLDTDAASPVV 622
+ ++ N + E ++D + K K LSL+ D V
Sbjct: 5 TKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVY 64
Query: 623 EVTPKKTRKESESKNTTASETTASETPCTEELDVMTPSSRKESESKNTTASETTASE 679
V E + K ++ + + + + +RKE N + A E
Sbjct: 65 TVEGVDDNNEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAME 121
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 30.6 bits (69), Expect = 0.93
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 376 YYDVEPFLFYVLTQNDDKGCHLVGYFS-----KEKHCQQKYN-VSCIMTLPQYQRKGYGR 429
++++ D +V S K H V ++ + +R+ G
Sbjct: 60 AMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGA 119
Query: 430 FLIDFSYLLSKKEG 443
L+ L K G
Sbjct: 120 VLLKTLVSLGKSLG 133
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus
horikoshii OT3, riken struct genomics/proteomics
initiative, RSGI; HET: ACO; 1.75A {Pyrococcus
horikoshii} SCOP: d.108.1.1
Length = 159
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 376 YYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYN------VSCIMTLPQYQRKGYGR 429
+ F+V D +VG+ +K KY + + ++Q KG GR
Sbjct: 49 CWKKASDGFFVAKVGD----KIVGFIVCDKDWFSKYEGRIVGAIHEFVVDKKFQGKGIGR 104
Query: 430 FLIDF 434
L+
Sbjct: 105 KLLIT 109
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 30.1 bits (67), Expect = 1.1
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 144 CC-ACNVYYHIICLQPPLERRL-------KVPWKCTSCES 175
CC C+ + C+ L RR W C C
Sbjct: 71 CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110
>3ec4_A Putative acetyltransferase from the GNAT family; YP_497011.1, joint
center for structural genomics; 1.80A {Novosphingobium
aromaticivorans dsm 12ORGANISM_TAXID}
Length = 228
Score = 31.0 bits (70), Expect = 1.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 416 IMTLPQYQRKGYGRFLIDF 434
+ T P+Y+ +G LI
Sbjct: 163 VCTWPEYRGRGLAARLIRK 181
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 28.3 bits (63), Expect = 1.6
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 142 IKCCACNVYYHIICLQPPLERRLKVPWKCTSCE 174
I+C C+ + H+ C + + + + C C
Sbjct: 34 IECNECHTWIHLSCAKIR-KSNVPEVFVCQKCR 65
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family,
structural genomics, PSI, protein structure initiative;
1.41A {Pseudomonas aeruginosa PAO1}
Length = 182
Score = 30.1 bits (68), Expect = 1.7
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 380 EPFLFYVLTQNDDKGCHLVGY--FSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYL 437
E V + ++G+ F + +H + +M P + G R+LI
Sbjct: 70 ERRGSTVAVHDG----QVLGFANFYQWQHGDFCALGN-MMVAPAARGLGVARYLIGVMEN 124
Query: 438 LSKKEG 443
L++++
Sbjct: 125 LAREQY 130
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme
A complex, MSHD, TRAN; HET: COA ACO; 1.60A
{Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB:
1ozp_A* 2c27_A*
Length = 318
Score = 30.6 bits (68), Expect = 1.9
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 377 YDVEPFLFYVLTQNDDKGCHLVGYF--SKEKHCQQKYNVSCIMTLPQYQRKGYGRFLI 432
+D + + ++ L+G+ V + P QR+G G+ L
Sbjct: 200 FDPDGLILAFGDSPRERPGRLLGFHWTKVHPDHPGLGEVYVLGVDPAAQRRGLGQMLT 257
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative
acetyltransferase of the GNAT family; 1.85A
{Desulfovibrio desulfuricans subsp}
Length = 177
Score = 29.8 bits (67), Expect = 1.9
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 375 LYYDVEPFLFYVLTQNDDKGCHLVGY--FSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLI 432
L + +V DD + GY + + Y++ I P Q G GR L+
Sbjct: 60 LMHGAACGYHFVFATEDDD---MAGYACYGPTPATEGTYDLYWIAVAPHRQHSGLGRALL 116
Query: 433 D 433
Sbjct: 117 A 117
>2kcw_A Uncharacterized acetyltransferase YJAB; GNAT fold, acyltransferase;
NMR {Escherichia coli}
Length = 147
Score = 29.3 bits (66), Expect = 2.1
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 385 YVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
+V D+ + + + + P + G GR L++
Sbjct: 53 WVAVNERDQPVGFMLLSGQH--------MDALFIDPDVRGCGVGRVLVEH 94
>2fiw_A GCN5-related N-acetyltransferase:aminotransferase II;
alpha-beta-alpha sandwich, GCN4-related
acetyltransferase, S genomics, PSI; HET: ACO; 2.35A
{Rhodopseudomonas palustris} SCOP: d.108.1.1
Length = 172
Score = 29.8 bits (67), Expect = 2.3
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLID 433
+ T VG+ S + + + P Y + G LID
Sbjct: 64 TLIATLQG----VPVGFASLKGPDH----IDMLYVHPDYVGRDVGTTLID 105
>3g3s_A GCN5-related N-acetyltransferase; ZP_00874857.1, acetyltransferase
(GNAT) family, structural joint center for structural
genomics, JCSG; HET: MSE; 1.80A {Streptococcus suis}
Length = 249
Score = 30.1 bits (67), Expect = 2.4
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 9/65 (13%)
Query: 371 DHKTLYYDVEPFL----FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKG 426
D Y DVE FL V+ +V S + + T Y+ G
Sbjct: 145 DLVGNYIDVEQFLDLGLGCVILHKG----QVVSGASSYASYSAGIEIE-VDTREDYRGLG 199
Query: 427 YGRFL 431
+
Sbjct: 200 LAKAC 204
>1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5,
acetyltransferase, SGC, structural genomics, structural
genomics consortium; HET: ACO; 1.74A {Homo sapiens}
SCOP: d.108.1.1 PDB: 1cm0_B*
Length = 168
Score = 29.5 bits (66), Expect = 2.8
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 375 LYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
L +D + ++ G F + + + Q KGYG L++
Sbjct: 48 LVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTE----IVFCAVTSNEQVKGYGTHLMNH 103
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type
transport system, PERI component, transport protein;
HET: GDS; 1.85A {Haemophilus parasuis}
Length = 522
Score = 30.4 bits (69), Expect = 2.9
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 29 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPFPQEYARNTQVVSKL 88
+Y+QA + P + +A P V+ + SPF Y T++ KL
Sbjct: 457 AKIYEQAQVLLKEQAPWINVAHSINFAPT-----SKRVQDYKQSPFGYTYLYGTKLADKL 511
Score = 29.2 bits (66), Expect = 5.1
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 251 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPF 296
+Y+QA + P + +A P V+ + SPF
Sbjct: 457 AKIYEQAQVLLKEQAPWINVAHSINFAPT-----SKRVQDYKQSPF 497
>4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti}
PDB: 4fd6_A
Length = 222
Score = 29.7 bits (66), Expect = 2.9
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 403 KEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQR 445
K+ + + + + +++ KG + LI+ S L+ G +
Sbjct: 123 KQFDVDKIFEIRILSVDSRFRGKGLAKKLIEKSEELALDRGFQ 165
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 27.2 bits (60), Expect = 2.9
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 142 IKCCA-CNVYYHIICLQPPLERRLKVPWKCTSC 173
++C C+ ++H +C+ E + C +C
Sbjct: 19 VQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI,
protein structure initiative; 2.80A {Pseudomonas
aeruginosa PAO1} SCOP: d.108.1.1
Length = 153
Score = 28.9 bits (65), Expect = 3.1
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 378 DVEPFLFYVLTQNDDK--G-CHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDF 434
E ++ L +D+ G C L FS ++ + ++ I + +R+ L+
Sbjct: 44 RKESVIYLALADEEDRLLGFCQLYPSFS-SLSLKRVWILNDIYVAEEARRQLVADHLLQH 102
Query: 435 SYLLSKKEG 443
+ ++++
Sbjct: 103 AKQMARETH 111
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 28.9 bits (65), Expect = 3.5
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 416 IMTLPQYQRKGYGRFLIDFSYLLSKKEGQR 445
++ +Q +G GR ++ + +G R
Sbjct: 94 LLIREDHQGRGLGRQALE--RFAAGLDGVR 121
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.48A {Clostridium difficile}
Length = 157
Score = 29.0 bits (65), Expect = 3.5
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 380 EPFLFYVLTQNDDK--GCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYL 437
E Y + DK + Y + + + +Y+RKG +L ++
Sbjct: 52 ERKGKYHVYTVFDKVVAQIMYTYEWSDWRNGNFLWIQSVYVDKEYRRKGIFNYLFNYIKN 111
Query: 438 LSKKEG 443
+ K+
Sbjct: 112 ICDKDE 117
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 30.0 bits (68), Expect = 3.7
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 15 LLATDLAPGVTRK----------DIDLYKQAHEEATKATPLLPLAVPEQI-----NPAAI 59
+LATD APG+ R D ++++ EA + I
Sbjct: 210 MLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269
Query: 60 E 60
+
Sbjct: 270 Q 270
Score = 30.0 bits (68), Expect = 3.7
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 88 LLATDLAPGVTRK----------DIDLYKQAHEEATKATPLLPLAVPEQI-----NPAAI 132
+LATD APG+ R D ++++ EA + I
Sbjct: 210 MLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269
Query: 133 E 133
+
Sbjct: 270 Q 270
Score = 30.0 bits (68), Expect = 3.7
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 237 LLATDLAPGVTRK----------DIDLYKQAHEEATKATPLLPLAVPEQI-----NPAAI 281
+LATD APG+ R D ++++ EA + I
Sbjct: 210 MLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269
Query: 282 E 282
+
Sbjct: 270 Q 270
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Length = 164
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 380 EPFLFYVLTQNDDK-GCHLVGYF--SKEKHCQQKYNVSCIMTL---PQYQRKGYGRFLID 433
E V +K G + V + + Q+ I L + G GR + +
Sbjct: 52 EKSTVLVFVDEREKIGAYSVIHLVQTPLLPTMQQRKTVYISDLCVDETRRGGGIGRLIFE 111
Query: 434 FSYLLSKKEG 443
K
Sbjct: 112 AIISYGKAHQ 121
>4fd7_A Putative arylalkylamine N-acetyltransferase 7; GNAT, COA binding;
1.80A {Aedes aegypti}
Length = 238
Score = 29.4 bits (65), Expect = 4.0
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 395 CHLVGYFSKEKHCQQKYNVSCIM------TLPQYQRKGYGRFLIDFSYLLSKKEG 443
+ Y S + + +YNV + P+Y+ +G ++ L + G
Sbjct: 126 YDTIEYVSHQANIFDRYNVDHYLNAMGLSVDPKYRGRGIATEILRARIPLCRAVG 180
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A
{Haemophilus parasuis 29755}
Length = 521
Score = 29.6 bits (67), Expect = 4.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 29 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPF 74
LY+QA E + +P++P A P V+ + +PF
Sbjct: 462 AKLYQQAVEIFQQNSPIIPFAHSINYVPL-----NKRVQGFVQNPF 502
Score = 29.6 bits (67), Expect = 4.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 251 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPF 296
LY+QA E + +P++P A P V+ + +PF
Sbjct: 462 AKLYQQAVEIFQQNSPIIPFAHSINYVPL-----NKRVQGFVQNPF 502
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 27.2 bits (60), Expect = 4.3
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 142 IKCCACNVYYHIICLQPPLER-RLKVPWKCTSCESGTTEPSPAKTSPGRARA 192
I+C C ++H C+ E + C CE+ PS K +
Sbjct: 28 IECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA-VFGPSIMKNWHSGPSS 78
>2vez_A Putative glucosamine 6-phosphate acetyltransferase;
acyltransferase; HET: ACO G6P; 1.45A {Aspergillus
fumigatus} PDB: 2vxk_A*
Length = 190
Score = 28.8 bits (64), Expect = 4.5
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 381 PFLFYVLTQNDDK--GCHLVGYFSKEKH-CQQKYNVSCIMTLPQYQRKGYGRFLIDFSYL 437
+ V+ + + G + K H ++ I Q K G +I
Sbjct: 93 EYYLLVVCDGEGRIVGTGSLVVERKFIHSLGMVGHIEDIAVEKGQQGKKLGLRIIQALDY 152
Query: 438 LSKKEG 443
+++K G
Sbjct: 153 VAEKVG 158
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 28.5 bits (64), Expect = 4.5
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 364 LLAKLFLDHKTLYYDVEPFLFYVLTQNDDKGC-------HLVGYFS------KEKHCQQK 410
L L L +F + V + + +
Sbjct: 22 LYQVLNPSDPELTTQEAGAVFAAMLAQPGLTIFVATENGKPVATATLLIVPNLTRAARPY 81
Query: 411 YNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEG 443
+ ++TL + +GYGR ++ + +
Sbjct: 82 AFIENVVTLEARRGRGYGRTVVRHAIETAFGAN 114
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 27.9 bits (61), Expect = 5.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 120 PLAVPEQINPAAIEFGQYEVCLIKCCACNVYYHIICLQPPLERRLKVP-WKCTSCESGTT 178
LAV + + + + C+ +H++CL K +C SC++
Sbjct: 34 KLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93
Query: 179 EPS 181
E +
Sbjct: 94 EKT 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 28.7 bits (63), Expect = 5.4
Identities = 12/74 (16%), Positives = 19/74 (25%)
Query: 140 CLIKCCACNVYYHIICLQPPLERRLKVPWKCTSCESGTTEPSPAKTSPGRARASLTTSFR 199
L+ C C +H+ C P L W CT C + T+
Sbjct: 18 DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQG 77
Query: 200 ERKKQLKQQRLAAK 213
++
Sbjct: 78 LSPVDQRKCERLLL 91
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic,
chemotaxis binding proteins for active transport; 2.00A
{Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Length = 507
Score = 29.2 bits (66), Expect = 5.6
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 29 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPF 74
++LYKQA P L +A P + EVK + P
Sbjct: 456 VELYKQAQVVMHDQAPALIIAHSTVFEPV-----RKEVKGYVVDPL 496
Score = 29.2 bits (66), Expect = 5.6
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 251 IDLYKQAHEEATKATPLLPLAVPEQINPAAIEFGQYEVKTWYSSPF 296
++LYKQA P L +A P + EVK + P
Sbjct: 456 VELYKQAQVVMHDQAPALIIAHSTVFEPV-----RKEVKGYVVDPL 496
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 142 IKCCACNVYYHIICLQ-PPLERRLKVPWKCTSCESGTTEPSPA 183
I C C +++H C++ P +KC SC + + PS
Sbjct: 23 ICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN-KSGPSSG 64
>2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransfe (GNAT)
family, structural genomics, joint center for struct
genomics, JCSG; HET: COA; 2.00A {Anabaena variabilis}
SCOP: d.106.1.4 d.108.1.10
Length = 396
Score = 28.9 bits (64), Expect = 6.5
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 413 VSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQ 444
++ + P+Y+ G LI + ++
Sbjct: 82 IAAVGIAPEYRGDGAAIALIQHTLQEISEQDI 113
>2of7_A Putative TETR-family transcriptional regulator; APC7240,
streptomyces coelicolor A3, structural genomics, PSI-2;
2.30A {Streptomyces coelicolor}
Length = 260
Score = 28.7 bits (64), Expect = 6.5
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 174 ESGTTEPSPAKTSPGRARASLTTSFRERKKQLKQQRLAA 212
E+ + A S + RERKK ++ + A
Sbjct: 17 ENLYFQGHMAARSAPSPAGAPRPGLRERKKTRTREAIRA 55
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Drosophila melanogaster} SCOP:
d.108.1.5
Length = 312
Score = 29.0 bits (64), Expect = 6.6
Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 20/143 (13%)
Query: 315 YTKSKAVLERHRDKCAWRHPPATEIYRKENLSVFEVDGNQNKFYCQNLCLLAKLFLDHKT 374
+ K + + E+ +V ++F + +L +
Sbjct: 132 CNRVKELAVSRGVTAIQPRQCFGMVLSHEDAFCAKVPDLPSEFE------IRRLRAEDAA 185
Query: 375 LYYDVEPF-----LFYVLTQNDDKGCHLVGYFSKEKH-------CQQKYNVSCIMTLPQY 422
+ +D P L Y+ +G + + + LP+
Sbjct: 186 MVHDSWPNKGEGSLTYLQALVRFNKS--LGICRSDTGELIAWIFQNDFSGLGMLQVLPKA 243
Query: 423 QRKGYGRFLIDFSYLLSKKEGQR 445
+R+G G L + +
Sbjct: 244 ERRGLGGLLAAAMSREIARGEEI 266
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: d.108.1.1
Length = 199
Score = 28.5 bits (63), Expect = 6.7
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 400 YFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEGQR 445
F +E+ ++ + I +++ G G L+D ++K G++
Sbjct: 102 LFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQ 147
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 28.6 bits (63), Expect = 6.8
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 263 KATPLLPLAVPEQINPAAIEFGQYEV----KTWYSSPFPQEYARLPKLFLCEFCLKYTKS 318
K T L +P IE Q+ + R +L F L++ S
Sbjct: 180 KGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINS 239
Query: 319 KAV 321
V
Sbjct: 240 DVV 242
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 27.8 bits (61), Expect = 7.2
Identities = 12/66 (18%), Positives = 18/66 (27%)
Query: 575 NVDAETTATETTEKEDEAETEEETVVKKTKRGRKRKLSLDTDAASPVVEVTPKKTRKESE 634
+ E E +K R +KRK E+ P E E
Sbjct: 68 ALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 127
Query: 635 SKNTTA 640
S ++
Sbjct: 128 SGPSSG 133
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 28.2 bits (62), Expect = 7.3
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 4/49 (8%)
Query: 135 GQYEVCLIKCCACNVYYHIICLQPPLERRLK----VPWKCTSCESGTTE 179
Q ++C C ++ L + C C
Sbjct: 14 RQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNT 62
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148,
GNAT famil protein structure initiative; 2.15A
{Bacteroides thetaiotaomicron}
Length = 181
Score = 28.0 bits (62), Expect = 8.2
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 11/64 (17%)
Query: 373 KTLYYDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTL---PQYQRKGYGR 429
+ + F ++ +D +G+ + P + GYG+
Sbjct: 41 REYTDRIGNFHNNIIFDDDL----PIGFI----TYWDFDEFYYVEHFATNPALRNGGYGK 92
Query: 430 FLID 433
++
Sbjct: 93 RTLE 96
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase,
phosphoribosylaminoimidazolesuccinocarboxamide (saicar)
SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces
cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A*
2cnv_A* 1obg_A*
Length = 306
Score = 28.4 bits (64), Expect = 8.3
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 215 TPQKRGKRASVDMMVSEDVVSKLLATDLAPGVTRKDIDLYKQAHEEA 261
TP + ++ D +S ++L+ DL+ V + LY + + A
Sbjct: 160 TPSTKAEQGEHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYA 206
>3pp9_A Putative streptothricin acetyltransferase; toxin production
resistance, infectious diseases, structural genomics;
HET: MSE ACO; 1.60A {Bacillus anthracis}
Length = 187
Score = 27.9 bits (62), Expect = 8.6
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 384 FYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSYLLSKKEG 443
F VL +N + ++ I +Y+ G G+ LI + +K+
Sbjct: 90 FIVLKKNWNNYAYIED----------------ITVDKKYRTLGVGKRLIAQAKQWAKEGN 133
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.5 bits (63), Expect = 8.7
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 549 WTPLVSHIVNPYKTLTKESSKPSSGGNVDAETTATETTEKEDEAETEEETVVKKTKRGRK 608
+ K++T S + A+ DE ++ V + +R RK
Sbjct: 552 EKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRK 611
Query: 609 RKLSLDTDAASPVVEVTPKKTRKESESKN 637
RKL + ++ K++R E + +
Sbjct: 612 RKLDEKENLSA-------KRSRIEQKEEL 633
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA,
spermine, spermidine, transferase; HET: COA; 1.50A
{Paramecium bursaria chlorella virus 1}
Length = 197
Score = 28.0 bits (62), Expect = 9.6
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 377 YDVEPFLFYVLTQNDDKGCHLVGYFSKEKHCQQKYNVSCIMTLPQYQRKGYGRFLIDFSY 436
YD + Y + D L G K + + KG L+ +
Sbjct: 76 YDAYENMHYGNIRETDPMFDLFGNL-DSYTPDDKC-LYVFAIGSEVTGKGLATKLLKKTI 133
Query: 437 LLSKKEG 443
S G
Sbjct: 134 EESSSHG 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.381
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,039,150
Number of extensions: 649861
Number of successful extensions: 1060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 137
Length of query: 760
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 659
Effective length of database: 3,881,772
Effective search space: 2558087748
Effective search space used: 2558087748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.9 bits)