Query psy6982
Match_columns 222
No_of_seqs 152 out of 355
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:47:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw6_A FI08434P, beta-4-galact 100.0 4.3E-49 1.5E-53 354.1 7.7 122 95-218 12-147 (287)
2 2fy7_A Beta-1,4-galactosyltran 100.0 1.4E-28 4.6E-33 217.2 13.4 136 81-218 12-161 (287)
3 2nxv_A ATP synthase subunits r 90.9 0.58 2E-05 38.7 6.9 55 136-192 17-71 (249)
4 3bcv_A Putative glycosyltransf 85.1 1.4 4.9E-05 34.7 5.4 39 135-177 5-44 (240)
5 1qg8_A Protein (spore coat pol 82.7 1.9 6.6E-05 34.4 5.3 38 136-177 2-40 (255)
6 1xhb_A Polypeptide N-acetylgal 81.7 3.1 0.00011 37.2 6.8 44 134-178 28-72 (472)
7 3f1y_A Mannosyl-3-phosphoglyce 80.5 2.1 7.3E-05 38.7 5.3 43 134-176 93-135 (387)
8 4fix_A UDP-galactofuranosyl tr 77.5 1.9 6.6E-05 41.7 4.3 52 123-178 167-223 (657)
9 2d7i_A Polypeptide N-acetylgal 72.9 4.7 0.00016 37.7 5.5 48 127-177 98-154 (570)
10 2ffu_A Ppgalnact-2, polypeptid 69.3 11 0.00038 34.1 7.0 43 134-177 65-108 (501)
11 2z86_A Chondroitin synthase; G 58.3 11 0.00037 34.8 4.9 41 133-177 91-133 (625)
12 3ckj_A Putative uncharacterize 53.8 14 0.00047 31.7 4.4 39 134-176 47-87 (329)
13 2z86_A Chondroitin synthase; G 46.4 46 0.0016 30.7 7.0 40 134-177 374-414 (625)
14 2gjf_A Designed protein; proca 23.2 1.4E+02 0.0046 20.3 4.8 40 124-172 37-76 (78)
No 1
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-49 Score=354.13 Aligned_cols=122 Identities=18% Similarity=0.279 Sum_probs=86.1
Q ss_pred CCcceeeecCCCc-HHHHHHHcCCCCcCCCCeecCCCCccCceeEEEEecCCchhhHHHHHHHHHHHHhhccceEEEEEE
Q psy6982 95 LQGALKIHKRYRS-LNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFII 173 (222)
Q Consensus 95 L~G~l~v~~~~~~-l~ev~~~~~~~~v~~GG~~~P~~C~~~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQql~y~I~Vi 173 (222)
-+||+.|+|+.+. |++|+++|| .|++||+|+|++|++++|||||||||||++||+.||+||||||||||++|+||||
T Consensus 12 ~~gp~~~~~~~~~~l~~v~~~~~--~v~~gG~~~P~~c~~~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y~I~Vi 89 (287)
T 3lw6_A 12 GSGPMLIEFNIPVDLKLVEQQNP--KVKLGGRYTPMDGASVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVL 89 (287)
T ss_dssp -------------------------------------CCCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCeEEEcCCCCCHHHHHHhCC--CcccCCEECCCccCCcceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3699999999886 999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccccceehhh-----------hcccceeccCCCccccCC--CCeeeeEe
Q psy6982 174 EQASNRKRAGSTRVRAWWK-----------SSAQILYCSISCGYHCTL--QRSKTSFA 218 (222)
Q Consensus 174 eQ~~~~~FNRg~L~NvGf~-----------hdvDllP~nd~~~Y~c~~--~p~h~s~~ 218 (222)
||.|+.+||||+||||||. |||||||+||+|.|.|++ +|+|+|++
T Consensus 90 eQ~~~~~FNRa~LlNvGf~ea~~~~d~~ifHDVDLlP~dd~n~Y~c~~~~~P~Hls~~ 147 (287)
T 3lw6_A 90 NQVDRFRFNRASLINVGFQFASDVYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGP 147 (287)
T ss_dssp EECSSSCCCHHHHHHHHHHHSCTTCCEEEEECTTEEECCTTSCCCCCCTTCCEESSCT
T ss_pred ecCCCCccchhheecccHHHHhccCCEEEEecccccccCCCccccCCCCCCceEEeec
Confidence 9999999999999999997 999999999999999998 89999863
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.96 E-value=1.4e-28 Score=217.21 Aligned_cols=136 Identities=32% Similarity=0.553 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCCCCCcceeeecCCCc-HHHHHHHcCCCCcCCCCeecCCCCccCceeEEEEecCCchhhHHHHHHHHHH
Q psy6982 81 TTGIAQFCPVVPPNLQGALKIHKRYRS-LNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDRKPHLHLLLYNLHP 159 (222)
Q Consensus 81 ~~~~~~~CP~~~P~L~G~l~v~~~~~~-l~ev~~~~~~~~v~~GG~~~P~~C~~~~kvAIIIPyRdR~~hL~~fL~~Lhp 159 (222)
.+..++.||+.||.|+|++.|+++.+. ++|++++|| .+++||+|+|.+|.+..+|+||||+|||+++|+.+|..|++
T Consensus 12 ~~~~~~~c~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~ 89 (287)
T 2fy7_A 12 GSASLPACPEESPLLVGPMLIEFNMPVDLELVAKQNP--NVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHP 89 (287)
T ss_dssp CCCCCCBCCSSCTTCCCBCCCCCCSCCCHHHHHHHCT--TCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCcCCcCcceecccCCCCHHHHHhhCC--CcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 455699999999999999999998765 999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhccceEEEEEEeecCcccccccccceehh----h---------hcccceeccCCCccccCCCCeeeeEe
Q psy6982 160 MLVRQQIDYTIFIIEQASNRKRAGSTRVRAWW----K---------SSAQILYCSISCGYHCTLQRSKTSFA 218 (222)
Q Consensus 160 ~LqRQql~y~I~VieQ~~~~~FNRg~L~NvGf----~---------hdvDllP~nd~~~Y~c~~~p~h~s~~ 218 (222)
+|++|..+|.|+||+|.+++.||||+++|+|+ . +|+|.+|..|.+.|.|...|+|++..
T Consensus 90 ~l~q~~~~~EIiVVdds~d~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~~~~~~p~~~~~~ 161 (287)
T 2fy7_A 90 VLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVA 161 (287)
T ss_dssp HHHHTTCEEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCE
T ss_pred HHHHhcCCceEEEEEeCCCCccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcceEecCCCCceEEEe
Confidence 99999999999999999999999999999999 4 99999999999999999899997653
No 3
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=90.87 E-value=0.58 Score=38.74 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=41.9
Q ss_pred eeEEEEecCCchhhHHHHHHHHHHHHhhccceEEEEEEeecCcccccccccceehhh
Q psy6982 136 RVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRKRAGSTRVRAWWK 192 (222)
Q Consensus 136 kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQql~y~I~VieQ~~~~~FNRg~L~NvGf~ 192 (222)
++.||++| |+++.|+..|..+..-+..|.. |.|+||....+.....|.-+|.|..
T Consensus 17 ~iSII~~y-N~~~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d~~g~a~a~N~Gi~ 71 (249)
T 2nxv_A 17 MFSVCSLV-RDQAKYDRLLESFERFGFTPDK-AEFLAADNREGNQFHGFSWHKQMLP 71 (249)
T ss_dssp SEEEEEEE-SCHHHHHHHHHHHHHTTCCTTT-EEEEEEECTTSCSCCTTTHHHHHGG
T ss_pred eEEEEEee-CCHHHHHHHHHHHHHhccCCCc-EEEEEEECCCCCcccHHHHHHHHHH
Confidence 57776555 6689999999888766666655 9999998766554566788898886
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=85.06 E-value=1.4 Score=34.71 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=31.0
Q ss_pred ceeEEEEecCCchhhHHHHHHHHHHHHhhcc-ceEEEEEEeecC
Q psy6982 135 FRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ-IDYTIFIIEQAS 177 (222)
Q Consensus 135 ~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq-l~y~I~VieQ~~ 177 (222)
.+|.||||-+||++.|...|.-+. +|. -++.|+||....
T Consensus 5 p~vsViIp~yn~~~~l~~~l~Sl~----~q~~~~~eiIvvDd~S 44 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLDQCVQALL----AQTLSDIEIILIDDES 44 (240)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHH----TCSSSSEEEEEEECCC
T ss_pred CcEEEEEecCCCHHHHHHHHHHHH----hCcCCCeEEEEEECCC
Confidence 479999999999999998887763 343 478999998653
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=82.66 E-value=1.9 Score=34.39 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=30.2
Q ss_pred eeEEEEecCCchhhHHHHHHHHHHHHhhcc-ceEEEEEEeecC
Q psy6982 136 RVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ-IDYTIFIIEQAS 177 (222)
Q Consensus 136 kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq-l~y~I~VieQ~~ 177 (222)
+|.||||-+||++.|...|..+. +|. -++.|+||....
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~----~q~~~~~eiivvDd~S 40 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSIL----SQTFSDFELFIMDDNS 40 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHH----TCSCCCEEEEEEECSC
T ss_pred eEEEEEEcCCCHHHHHHHHHHHH----hccCCceEEEEEECCC
Confidence 68999999999999998887764 343 378999987643
No 6
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=81.71 E-value=3.1 Score=37.16 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=32.2
Q ss_pred CceeEEEEecCCch-hhHHHHHHHHHHHHhhccceEEEEEEeecCc
Q psy6982 134 LFRVAIIVPYRDRK-PHLHLLLYNLHPMLVRQQIDYTIFIIEQASN 178 (222)
Q Consensus 134 ~~kvAIIIPyRdR~-~hL~~fL~~Lhp~LqRQql~y~I~VieQ~~~ 178 (222)
..+|.||||.+|++ +.|...|..+..-- ...+.|.|+||....+
T Consensus 28 ~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~-~~~~~~EIIvVDd~S~ 72 (472)
T 1xhb_A 28 LPTTSVVIVFHNEAWSTLLRTVHSVINRS-PRHMIEEIVLVDDASE 72 (472)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSS-CGGGEEEEEEEECSCC
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHHhcC-cHhHceEEEEEECCCC
Confidence 35799999999999 88888877664311 1235689999987654
No 7
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=80.53 E-value=2.1 Score=38.70 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=37.7
Q ss_pred CceeEEEEecCCchhhHHHHHHHHHHHHhhccceEEEEEEeec
Q psy6982 134 LFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFIIEQA 176 (222)
Q Consensus 134 ~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQql~y~I~VieQ~ 176 (222)
..+|.||||-.|.++.|...|..+...+|....++.|+||.-.
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDg 135 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDAD 135 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECS
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCc
Confidence 3579999999999999999999999888776678999999864
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=77.45 E-value=1.9 Score=41.72 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCeec-CCCCccCceeEEEEecCCchhhHHHHHHHHHHHHhhcc----ceEEEEEEeecCc
Q psy6982 123 GGSHR-PKSCIALFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ----IDYTIFIIEQASN 178 (222)
Q Consensus 123 GG~~~-P~~C~~~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq----l~y~I~VieQ~~~ 178 (222)
+|.|. |..=....+|+||||-.||++.|...|..| .+|. ..+.|+||.+..+
T Consensus 167 ~~~w~~~~~~~~~pkVSVVIptYN~~~~L~~~L~SL----~~qt~~~~~~~EIIVVDNgSt 223 (657)
T 4fix_A 167 SGGWYATSPAPGTANIAVGIPTFNRPADCVNALREL----TADPLVDQVIGAVIVPDQGER 223 (657)
T ss_dssp EEEEECSSCCCSCCCEEEECCBSSCHHHHHHHHHHH----TTSHHHHTTEEEEEEEECSSS
T ss_pred eeEEeCCCCCCCCCeEEEEEEecCCHHHHHHHHHHH----HcCccccCCCCEEEEEECcCC
Confidence 46665 433334578999999999999988888765 3444 4679999998764
No 9
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=72.91 E-value=4.7 Score=37.75 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=32.6
Q ss_pred cCCCCcc------CceeEEEEecCCch-hhHHHHHHHHHHHHhhc--cceEEEEEEeecC
Q psy6982 127 RPKSCIA------LFRVAIIVPYRDRK-PHLHLLLYNLHPMLVRQ--QIDYTIFIIEQAS 177 (222)
Q Consensus 127 ~P~~C~~------~~kvAIIIPyRdR~-~hL~~fL~~Lhp~LqRQ--ql~y~I~VieQ~~ 177 (222)
++..|.. ..+|.||||.+|++ +.|...|.-+ +++. .+.|.|+||....
T Consensus 98 r~~~~~~~~~~~~~P~vSVIIp~yNe~~~~L~~~L~Sl---l~qt~~~~~~EIIVVDDgS 154 (570)
T 2d7i_A 98 RHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSV---LNRSPPELVAEIVLVDDFS 154 (570)
T ss_dssp SCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHH---HHHSCGGGEEEEEEEECSC
T ss_pred CCccceecccCCCCCCeEEEEEECCCCHHHHHHHHHHH---HhcCCccCcEEEEEEECCC
Confidence 4556753 24799999999998 6665555444 4432 3567999998653
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=69.28 E-value=11 Score=34.08 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=29.3
Q ss_pred CceeEEEEecCCchh-hHHHHHHHHHHHHhhccceEEEEEEeecC
Q psy6982 134 LFRVAIIVPYRDRKP-HLHLLLYNLHPMLVRQQIDYTIFIIEQAS 177 (222)
Q Consensus 134 ~~kvAIIIPyRdR~~-hL~~fL~~Lhp~LqRQql~y~I~VieQ~~ 177 (222)
..+|.||||.+|+++ .|...|.-+..-. ...+.|.|+||....
T Consensus 65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~-~~~~~~EIIvVDDgS 108 (501)
T 2ffu_A 65 LPATSVVITFHNEARSALLRTVVSVLKKS-PPHLIKEIILVDDYS 108 (501)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEEECSC
T ss_pred CCCEEEEEEeCcCcHHHHHHHHHHHHhhC-chhhceeEEEEECCC
Confidence 357999999999987 6666655543211 123568999998653
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=58.27 E-value=11 Score=34.85 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=31.2
Q ss_pred cCceeEEEEecCCchhhHHHHHHHHHHHHhhcc--ceEEEEEEeecC
Q psy6982 133 ALFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ--IDYTIFIIEQAS 177 (222)
Q Consensus 133 ~~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq--l~y~I~VieQ~~ 177 (222)
...+|.||||.+|+++.|...|..+. +|. ..+.|+||....
T Consensus 91 ~~p~vsviIp~~n~~~~l~~~l~sl~----~q~~~~~~eiivvDd~s 133 (625)
T 2z86_A 91 IIDGLSIVIPTYNRAKILAITLACLC----NQKTIYDYEVIVADDGS 133 (625)
T ss_dssp CCCCEEEEEEESSCHHHHHHHHHHHH----TCCCSSCEEEEEEEESC
T ss_pred cCCcEEEEEecCCcHHHHHHHHHHHH----hhccCCCeEEEEEeCCC
Confidence 34679999999999988887776653 343 378999998754
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=53.78 E-value=14 Score=31.66 Aligned_cols=39 Identities=5% Similarity=0.204 Sum_probs=30.6
Q ss_pred CceeEEEEecCCchhhHHHHHHHHHHHHhhcc--ceEEEEEEeec
Q psy6982 134 LFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ--IDYTIFIIEQA 176 (222)
Q Consensus 134 ~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq--l~y~I~VieQ~ 176 (222)
..+|.||||-.|+++.|...|..+. +|. ..+.|+||.-.
T Consensus 47 ~~~vSViIp~yN~~~~l~~~l~sl~----~q~~~~~~eiivVDdg 87 (329)
T 3ckj_A 47 GRTISVVLPALDEEDTIGSVIDSIS----PLVDGLVDELIVLDSG 87 (329)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHG----GGBTTTBSEEEEEECS
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHH----HhhCCCCcEEEEEeCC
Confidence 3579999999999999988887764 342 35899999854
No 13
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=46.41 E-value=46 Score=30.67 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=31.0
Q ss_pred CceeEEEEecCCchhhHHHHHHHHHHHHhhcc-ceEEEEEEeecC
Q psy6982 134 LFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQ-IDYTIFIIEQAS 177 (222)
Q Consensus 134 ~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQq-l~y~I~VieQ~~ 177 (222)
..+|.||||-.|+++.|...|..+. +|. -++.|+||....
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~----~q~~~~~eiivvdd~S 414 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESAL----NQTITDLEVCICDDGS 414 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHH----SSSCCSEEEEEEEESC
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHH----hCcCCCeEEEEEECcC
Confidence 3579999999999999988877653 333 478899988654
No 14
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=23.25 E-value=1.4e+02 Score=20.34 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=29.3
Q ss_pred CeecCCCCccCceeEEEEecCCchhhHHHHHHHHHHHHhhccceEEEEE
Q psy6982 124 GSHRPKSCIALFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFI 172 (222)
Q Consensus 124 G~~~P~~C~~~~kvAIIIPyRdR~~hL~~fL~~Lhp~LqRQql~y~I~V 172 (222)
-.|++.. .....+=|.||-.. +..+--+|++.++.|.|.+
T Consensus 37 dfW~~~~-~~~~~vdI~V~p~~--------~~~f~~~L~~~~I~y~Vli 76 (78)
T 2gjf_A 37 DWQNPPT-EPGQPVVILIPSDM--------VEWFLEMLKAKGIPFTVYV 76 (78)
T ss_dssp EESSCTT-STTCCEEEEECTTS--------HHHHHHHHHHHTCCEEEEE
T ss_pred EeeCCCC-CCCCeEEEEECHHH--------HHHHHHHHHHCCCcEEEEe
Confidence 4788655 44556788998654 4455677889999999986
Done!