RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6982
(222 letters)
>gnl|CDD|222351 pfam13733, Glyco_transf_7N, N-terminal region of glycosyl
transferase group 7. This is the N-terminal half of a
family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 136
Score = 96.4 bits (240), Expect = 2e-25
Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 88 CPVVPPNLQGALKIH-KRYRSLNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDR 146
CP P L G + + SL +I + +EPGG ++P C+ R AII+PYR R
Sbjct: 1 CPERSPLLVGPVSVSFSPVPSLAEIVENNT--HVEPGGRYKPAGCLPRSRTAIIIPYRAR 58
Query: 147 KPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRK 180
+ HL LLLY LHP L RQQ+ Y IF+IEQA N
Sbjct: 59 EEHLRLLLYRLHPFLQRQQLAYGIFVIEQAGNGP 92
>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the
formation of the poly-N-acetyllactosamine core
structures present in glycoproteins and
glycosphingolipids. Beta-4-Galactosyltransferase
transfers galactose from uridine diphosphogalactose to
the terminal beta-N-acetylglucosamine residues, hereby
forming the poly-N-acetyllactosamine core structures
present in glycoproteins and glycosphingolipids. At
least seven homologous beta-4-galactosyltransferase
isoforms have been identified that use different types
of glycoproteins and glycolipids as substrates. Of the
seven identified members of the
beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1
to -T7), b1,4-Gal-T1 is most characterized
(biochemically). It is a Golgi-resident type II membrane
enzyme with a cytoplasmic domain, membrane spanning
region, and a stem region and catalytic domain facing
the lumen.
Length = 219
Score = 78.8 bits (195), Expect = 4e-18
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 136 RVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFIIEQASN 178
+VAIIVP+R+R HL + L +LHP L RQQ+DY IF+IEQ N
Sbjct: 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGN 45
>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain
found in p85. Phosphoinositide 3-kinases (PI3Ks) are
essential for cell growth, migration, and survival.
p110, the catalytic subunit, is composed of an
adaptor-binding domain, a Ras-binding domain, a C2
domain, a helical domain, and a kinase domain. The
regulatory unit is called p85 and is composed of an SH3
domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain,
a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain.
There are 2 inhibitory interactions between p110alpha
and p85 of P13K: 1) p85 nSH2 domain with the C2,
helical, and kinase domains of p110alpha and 2) p85 iSH2
domain with C2 domain of p110alpha. There are 3
inhibitory interactions between p110beta and p85 of
P13K: 1) p85 nSH2 domain with the C2, helical, and
kinase domains of p110beta, 2) p85 iSH2 domain with C2
domain of p110alpha, and 3) p85 cSH2 domain with the
kinase domain of p110alpha. It is interesting to note
that p110beta is oncogenic as a wild type protein while
p110alpha lacks this ability. One explanation is the
idea that the regulation of p110beta by p85 is unique
because of the addition of inhibitory contacts from the
cSH2 domain and the loss of contacts in the iSH2 domain.
In general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 104
Score = 28.1 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 180 KRAGSTRVRAWWKSSAQILY-CSISCG---YHCTLQRSKTSFAFAA 221
K G+ +R SS Q Y CS+ C HC + +++T + FA
Sbjct: 25 KPDGTFLIRE---SSTQGCYACSVVCNGEVKHCVIYKTETGYGFAE 67
>gnl|CDD|237735 PRK14503, PRK14503, mannosyl-3-phosphoglycerate synthase;
Provisional.
Length = 393
Score = 29.3 bits (66), Expect = 1.4
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 29/102 (28%)
Query: 97 GALKIHKRYRSLNQIEKELAPLELEPGGSHRPKSCI----------ALFRVAIIVPYRDR 146
GA++I++ + L +L+ G P I L R+AI+VP ++
Sbjct: 13 GAVRIYEVQKVL----------KLDSGREDVPAYTIRNVPREDLYDILGRMAIVVPVKNE 62
Query: 147 KPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRKRAGSTRVR 188
+ LL V + I + II SN KR R +
Sbjct: 63 RLK---LLEG-----VLKGIPHECPII-VVSNSKREPPDRFK 95
>gnl|CDD|144140 pfam00434, VP7, Glycoprotein VP7.
Length = 326
Score = 28.6 bits (64), Expect = 2.3
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 19 YKVLIIVVLALVLIEFTFSLLSETHNFYMHPFLTSINYTSPFMSSSIMYFNLTVQRNMD 77
Y ++ +++++L+ + ++ ++ ++ FL I SPF S+ NL + +MD
Sbjct: 6 YTTILTFLISIILLNYILKTITRIMDYIIYRFLLVIVVLSPFSSAQNYGINLPITGSMD 64
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 27.9 bits (62), Expect = 6.0
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 94 NLQGALKIHKRYRSLNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDRKPHLHLL 153
L+ A+++ R + Q+E+EL E A F ++ R+ HL
Sbjct: 237 ALRDAVELWPRLQEWKQLEQELTRRREEL----------ATFPRDGVLRLEKREAHLQKT 286
Query: 154 LYNLHPMLVR 163
+ +LVR
Sbjct: 287 EAEIDALLVR 296
>gnl|CDD|192303 pfam09488, Osmo_MPGsynth, Mannosyl-3-phosphoglycerate synthase
(osmo_MPGsynth). This family consists of examples of
mannosyl-3-phosphoglycerate synthase (MPGS), which
together with mannosyl-3-phosphoglycerate phosphatase
(MPGP) EC:2.4.1.217, comprises a two-step pathway for
mannosylglycerate biosynthesis. Mannosylglycerate is a
compatible solute that tends to be restricted to extreme
thermophiles of archaea and bacteria. Note that in
Rhodothermus marinus, this pathway is one of two; the
other is condensation of GDP-mannose with D-glycerate by
mannosylglycerate synthase.
Length = 381
Score = 26.9 bits (60), Expect = 8.4
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 97 GALKIHKRYRSLNQIEKELAPLELEPGGSHRPKSCI--ALFRVAIIVPYRDRKPHL 150
GA++IH+ R L +++ L P + P+ + L ++AI+VP +D L
Sbjct: 11 GAVRIHEVQRVL-ELDSGSTGLSGVPTIKNIPREELSDILGQMAIVVPVKDEDLKL 65
>gnl|CDD|220677 pfam10291, muHD, Muniscin C-terminal mu homology domain. The
muniscins are a family of endocytic adaptors that is
conserved from yeast to humans.This C-terminal domain is
structurally similar to mu homology domains, and is the
region of the muniscin proteins involved in the
interactions with the endocytic adaptor-scaffold
proteins Ede1-eps15. This interaction influences
muniscin localisation. The muniscins provide a combined
adaptor-membrane-tubulation activity that is important
for regulating endocytosis.
Length = 251
Score = 26.9 bits (60), Expect = 8.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 49 PFLTS--INYT---SPFMSSSIMYFNLTVQRNMDNTSTTGI 84
P TS ++Y SP SSS++ NL V N+D + T
Sbjct: 117 PHQTSLILDYKLNPSPASSSSLVLLNLVVSVNLDGSRVTSA 157
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 27.1 bits (61), Expect = 8.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 107 SLNQIEKELAPLELEPG---GSHRPKSCI 132
+L Q+EK L PL EP GS SCI
Sbjct: 116 TLYQLEKALKPLGREPHSVIGS----SCI 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.137 0.416
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,104,403
Number of extensions: 1029730
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1218
Number of HSP's successfully gapped: 22
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)