RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6982
(222 letters)
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 91.9 bits (227), Expect = 2e-22
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 69 NLTVQRNMDNTSTTGIAQFCPVVPPNLQGALKIHKRYR-SLNQIEKELAPLELEPGGSHR 127
++T + M S + CP P L G + I L + K+ ++ GG +
Sbjct: 2 SMTGGQQMGRGSAS--LPACPEESPLLVGPMLIEFNMPVDLELVAKQNP--NVKMGGRYA 57
Query: 128 PKSCIALFRVAIIVPYRDRKPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRKRAGSTRV 187
P+ C++ +VAII+P+R+R+ HL LY LHP+L RQQ+DY I++I QA + + +
Sbjct: 58 PRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLL 117
Query: 188 RAWWKSSAQILYCSISCGYHC 208
++ + + +
Sbjct: 118 NVGFQEALKDYDYTCFVFSDV 138
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 87.2 bits (215), Expect = 7e-21
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 88 CPVVPPNLQGALKIH-KRYRSLNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDR 146
G + I L +E++ +++ GG + P ++ ++A++VP+RDR
Sbjct: 5 GGQQMGRGSGPMLIEFNIPVDLKLVEQQ--NPKVKLGGRYTPMDGASVHKMALLVPFRDR 62
Query: 147 KPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRK 180
L + ++ L RQ + + IF++ Q +
Sbjct: 63 FEELLQFVPHMTAFLKRQGVAHHIFVLNQVDRFR 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 39/221 (17%), Positives = 64/221 (28%), Gaps = 72/221 (32%)
Query: 8 DRMVSVL----CQHIYKV--------LIIVVLAL----VLIEFTFSLLSETHNFYMHPFL 51
D S+L HI + L ++ +F +L + F M P
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 52 TSINYTSPFMSSSIMYFNLTVQRNMDNTSTTGIAQFCPVVPP-NLQGALKIHKRYRSLNQ 110
T S I + + N + V N+ R + +
Sbjct: 100 TEQRQPSMMTRMYIEQRD-----RLYNDN--------QVFAKYNVS-------RLQPYLK 139
Query: 111 IEKELAPLELEP---------GGSHRPKSCIAL-----FRVAIIVPY--------RDRKP 148
+ + L LEL P GS K+ +AL ++V + + P
Sbjct: 140 LRQAL--LELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 149 HLHL-----LLYNLHPMLVRQQIDYTIFI---IEQASNRKR 181
L LLY + P + D++ I I R
Sbjct: 196 ETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELR 235
Score = 29.8 bits (66), Expect = 0.78
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 45 FYMH-PF-LTSINYTSPFMSSSIMYFNLT-VQRNMDNTSTTGIAQFCPVVPPNLQGALKI 101
FY H L +I + +++ + +++ + + A N LK
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD---STAWNASGSILNTLQQLKF 529
Query: 102 HKRY---------RSLNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPY 143
+K Y R +N I L ++E + + R+A++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDL--LRIALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 38/261 (14%), Positives = 69/261 (26%), Gaps = 83/261 (31%)
Query: 26 VLALVLIEFTFSLLSET--HNFYMHPFLTSINYTSPFMSSSIM--YFN--LTVQRNMDNT 79
VL L L EF L H L N T+ + ++ Y + +R D
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 80 ST--------TG----IAQFCPVVPPNLQGA-------L-KIHKRYRSL-----NQIEKE 114
S G +A F QG L +++ Y L +
Sbjct: 141 SNSALFRAVGEGNAQLVAIF------GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 115 LAPLELEPGGSHRPKSCIALFRVAIIV------PYRDRKPHLHLL-----------LYNL 157
L+ L +F + + P P L + L
Sbjct: 195 LSEL------IRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLLSIPISCPLIGVIQL 246
Query: 158 -HPMLVRQQIDYTIFIIEQASNRKRAGSTRVRA------------W---WKSSAQILYCS 201
H ++ + + +T + + + + + W + S + +
Sbjct: 247 AHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 202 ISCGYHCTLQRSKTSFAFAAI 222
G C TS + +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSIL 324
Score = 35.8 bits (82), Expect = 0.011
Identities = 43/240 (17%), Positives = 71/240 (29%), Gaps = 92/240 (38%)
Query: 8 DRMVSVL------CQHIYKVLIIVVLALVLIEFTFSLL--SETHNF-YMHPFLTSINYTS 58
+ ++VL C Y S+L S +N P L+ N T
Sbjct: 297 RKAITVLFFIGVRCYEAYPNT----------SLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 59 PFMSSSIMYFNLTVQRNMD------NTSTTGIAQFCPVV--PPN-LQGALKIHKRYRSLN 109
+ + N + N + VV PP L G L + R
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAK----NL--VVSGPPQSLYG-LNLTLR----- 394
Query: 110 QIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDRKP-------------HLHLL--- 153
K AP L+ R +P+ +RK H HLL
Sbjct: 395 ---KAKAPSGLD---QSR-------------IPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 154 LYNLHPMLVRQQIDY-------TIFIIEQASN-RKRAGS---------TRVRAWWKSSAQ 196
++ LV+ + + ++ S+ R +GS R+ W+++ Q
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.1 bits (63), Expect = 3.2
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 20 KVLIIVVLALVLIEFTFSLLSETHNFYMHPFLTSI 54
+L+I+V+ +LI + S N + ++
Sbjct: 295 TILLILVIFTLLIVWVSSFY--RSNPIVQILEFTL 327
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: 2PE; 1.70A
{Silicibacter SP}
Length = 235
Score = 26.9 bits (59), Expect = 4.6
Identities = 5/66 (7%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 156 NLHPMLVRQQIDYTIFIIEQASNRKRAGSTRVRAWWKSSAQILYCSISCGYHCTLQR-SK 214
P++ + + A + G ++ +L ++ L +
Sbjct: 7 TFPPLMTGEAAGPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMA 66
Query: 215 TSFAFA 220
Sbjct: 67 MLPVCG 72
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 26.4 bits (58), Expect = 8.5
Identities = 5/43 (11%), Positives = 20/43 (46%)
Query: 152 LLLYNLHPMLVRQQIDYTIFIIEQASNRKRAGSTRVRAWWKSS 194
+L ++V D+++++ + + ++ +R A ++
Sbjct: 204 NVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.137 0.416
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,311,459
Number of extensions: 181507
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 10
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)