RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6982
         (222 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 94.7 bits (235), Expect = 3e-24
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 88  CPVVPPNLQGALKIHKRYR-SLNQIEKELAPLELEPGGSHRPKSCIALFRVAIIVPYRDR 146
           CP   P L G + I       L  +E++    +++ GG + P  CI+  +VAII+P+R+R
Sbjct: 3   CPEESPLLVGPMLIEFNIPVDLKLVEQQNP--KVKLGGRYTPMDCISPHKVAIIIPFRNR 60

Query: 147 KPHLHLLLYNLHPMLVRQQIDYTIFIIEQASNRK 180
           + HL   LY LHP+L RQQ+DY I++I QA    
Sbjct: 61  QEHLKYWLYYLHPILQRQQLDYGIYVINQAGESM 94


>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 267

 Score = 27.5 bits (60), Expect = 1.2
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 4/105 (3%)

Query: 105 YRSLNQIEKELAPLEL-EPGGSHRPKSCIALFRVAIIVPYRDRKPHL-HLLLYNLHPMLV 162
           +R      ++    +L  P       S +  F          ++P+  H  +      L 
Sbjct: 35  FRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLG 94

Query: 163 RQQIDYTIFIIEQASNRKRAGSTRVRAWWKSSAQILYCSISCGYH 207
           +Q     +         ++AG+  +     S  +   C  SCG  
Sbjct: 95  KQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK-TRC-TSCGVV 137


>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 M [TaxId: 9606]}
          Length = 157

 Score = 26.2 bits (57), Expect = 2.5
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 5/95 (5%)

Query: 111 IEKELAPLELEPGGSHRPKSCIALFRVAIIV-----PYRDRKPHLHLLLYNLHPMLVRQQ 165
           I+K++  L L             L    +++      Y+  K      +   +P    + 
Sbjct: 8   IQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKV 67

Query: 166 IDYTIFIIEQASNRKRAGSTRVRAWWKSSAQILYC 200
              T+                +R  WK    I   
Sbjct: 68  KCETMVYHPNIDLEGNVCLNILREDWKPVLTINSI 102


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 25.5 bits (56), Expect = 5.9
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 31  LIEFTFSLLSETHNFYMHPF 50
            I++  +      NFY  P+
Sbjct: 180 HIDWLTAFSIRYGNFYYCPW 199


>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 273

 Score = 24.6 bits (54), Expect = 9.8
 Identities = 2/19 (10%), Positives = 10/19 (52%)

Query: 32  IEFTFSLLSETHNFYMHPF 50
           +++  +   +  N++ +P 
Sbjct: 154 LDWVNNFGYQYLNWHYNPG 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 814,174
Number of extensions: 35163
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)