BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6983
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT3|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|E Chain E, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|F Chain F, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|G Chain G, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|H Chain H, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|2VP0|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP0|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
Length = 250
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G NL
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARY 112
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1OE0|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|2JJ8|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VPP|A Chain A, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
pdb|2VPP|B Chain B, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
Length = 230
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G NL
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARY 112
>pdb|2JCS|A Chain A, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
pdb|2JCS|B Chain B, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
Length = 230
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI +PV WR+V G NL
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTDPVEKWRNVNGVNL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARY 112
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G +L
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVDL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARY 112
>pdb|2A2Z|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A30|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
Length = 248
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWR 94
C S + +S G R+ + +EGNI +GK+TF++ + D EPV W
Sbjct: 12 CPSFSASSEGTRIKK---------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWC 62
Query: 95 DVKGHNLLALMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSAR 147
+V+ N+L +MYE RWS TFQT Q L L P+ ERS++S R
Sbjct: 63 NVQSTNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDR 122
Query: 148 WEL------TQCQICSQALMYENASRW 168
+ ++C ++ +Y++ W
Sbjct: 123 YIFASNLYESECMNETEWTIYQDWHDW 149
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 146 ARWELTQCQICSQ---ALMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMM 195
ARW C + S +MYE RWS TFQT Q L L P+
Sbjct: 59 ARW----CNVQSTNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFF 114
Query: 196 ERSIHSARFVLV 207
ERS++S R++
Sbjct: 115 ERSVYSDRYIFA 126
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + S D EPV W +V+ G N+L
Sbjct: 43 ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQKNGGNVLQ 102
Query: 104 LMYENASRWSLTFQTMVQKTMLEVH-------LDQPITPIKMMERSIHSARWELTQCQIC 156
+MYE RWS TFQT +M+ L P+ ERS++SAR+
Sbjct: 103 MMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNLYE 162
Query: 157 SQALMYENASRWSL 170
S+++ N + W++
Sbjct: 163 SESM---NETEWTI 173
>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
Length = 279
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + S D EPV W +V+ G N+L
Sbjct: 43 ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGNVLQ 102
Query: 104 LMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQIC 156
+MYE RWS TFQT Q L L P+ ERS++S R+
Sbjct: 103 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 162
Query: 157 SQALMYENASRWSL 170
S+++ N + W++
Sbjct: 163 SESM---NETEWTI 173
>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
Length = 279
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + S D EPV W +V+ G N+L
Sbjct: 43 ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGNVLQ 102
Query: 104 LMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQIC 156
+MYE RWS TFQT Q L L P+ ERS++S R+
Sbjct: 103 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 162
Query: 157 SQALMYENASRWSL 170
S+++ N + W++
Sbjct: 163 SESM---NETEWTI 173
>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
Length = 280
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + S D EPV W +V+ G N+L
Sbjct: 44 ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMSQKNGGNVLQ 103
Query: 104 LMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQIC 156
+MYE RWS TFQT Q L L P+ ERS++S R+
Sbjct: 104 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 163
Query: 157 SQALMYENASRWSL 170
S+++ N + W++
Sbjct: 164 SESM---NETEWTI 174
>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 20/112 (17%)
Query: 57 PFTVFVEGNIGSGKTTFLDYFNKS-GDITAYAEPVNLWRDVKGH------------NLLA 103
P + +EGNI GK+TF+ K+ + EPV W++++ NLL
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 104 LMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSIHSARW 148
+MY +RWS TFQT + L+V L+ Q P+++ ERS++S R+
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRY 113
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 160 LMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSIHSARFVLV 207
+MY +RWS TFQT + L+V L+ Q P+++ ERS++S R++
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFA 116
>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
Length = 279
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + S D EPV W +V+ G N+L
Sbjct: 43 ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTQDEFEELTMEQKNGGNVLQ 102
Query: 104 LMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQIC 156
+MYE RWS TFQT Q L L P+ ERS++S R+
Sbjct: 103 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 162
Query: 157 SQALMYENASRWSL 170
S+++ N + W++
Sbjct: 163 SESM---NETEWTI 173
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + D EPV W +V+ G N+L
Sbjct: 44 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 103
Query: 104 LMYENASRWSLTFQTMVQKTMLEVH-------LDQPITPIKMMERSIHSARWEL------ 150
+MYE RWS TFQT +M+ L P+ ERS++SAR+
Sbjct: 104 MMYEKPERWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNLYE 163
Query: 151 TQCQICSQALMYENASRW 168
++C ++ +Y++ W
Sbjct: 164 SECMNETEWTIYQDWHDW 181
>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
Length = 280
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 38/162 (23%)
Query: 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWR 94
C S + +S G R+ + +EGNI +GK+TF++ + D EPV W
Sbjct: 29 CPSFSASSEGTRIKK---------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWC 79
Query: 95 DVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTMLEVHLDQP 132
+V+ G N+L +MYE RWS TFQT Q L L
Sbjct: 80 NVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDA 139
Query: 133 ITPIKMMERSIHSARWEL------TQCQICSQALMYENASRW 168
P+ ERS++S R+ ++C ++ +Y++ W
Sbjct: 140 EKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDW 181
>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
Adp-Mg
pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, P 43 21 2 Space Group
pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
Adp-Mg
pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
And Adp
Length = 263
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWR 94
C S + +S G R+ + +EGNI +GK+TF++ + D EPV W
Sbjct: 12 CPSFSASSEGTRIKK---------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWC 62
Query: 95 DVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTMLEVHLDQP 132
+V+ G N+L +MYE RWS TFQT Q L L
Sbjct: 63 NVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDA 122
Query: 133 ITPIKMMERSIHSARW 148
P+ ERS++S R+
Sbjct: 123 EKPVLFFERSVYSDRY 138
>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With Adp And An Inhibitor
pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
Length = 241
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 60 VFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVK---------------GHNLLA 103
+ +EGNI +GK+TF++ + D EPV W +V+ G N+L
Sbjct: 5 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 64
Query: 104 LMYENASRWSLTFQTM-------VQKTMLEVHLDQPITPIKMMERSIHSARWEL------ 150
+MYE RWS TFQT Q L L P+ ERS++S R+
Sbjct: 65 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 124
Query: 151 TQCQICSQALMYENASRW 168
++C ++ +Y++ W
Sbjct: 125 SECMNETEWTIYQDWHDW 142
>pdb|1OSN|A Chain A, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|B Chain B, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|C Chain C, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
pdb|1OSN|D Chain D, Crystal Structure Of Varicella Zoster Virus Thymidine
Kinase In Complex With Bvdu-Mp And Adp
Length = 341
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 60 VFVEGNIGSGKTT----FLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASR 111
++++G G GKTT FL +F + + I EP++ WR++ G + + +Y +R
Sbjct: 15 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTR 71
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A
Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A
Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A
Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A
Protein
Length = 349
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 47 RMSSSVNNKKP--FTVFVEGNIGSGKTTFLDYFNK 79
R N KP F V + G G+GK+TF++YF K
Sbjct: 62 REQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGK 96
>pdb|1IO8|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO8|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 7 AFKLSGAGALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNI 66
AF+L G +F+ L ++ V ++H ++G + S V N + G I
Sbjct: 152 AFRLGKPGEIFELGKKYLELIGYV--------KDHLNSGTEVVSRVVNSNLSDIEKLGYI 203
Query: 67 ------GSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV 120
G+ TT L N D T + NLW+ ++ NL E A R+S V
Sbjct: 204 ILLLIAGNETTTNL-ISNSVIDFTRF----NLWQRIREENLYLKAIEEALRYSPPVMRTV 258
Query: 121 QKTMLEVHL-DQPI 133
+KT V L DQ I
Sbjct: 259 RKTKERVKLGDQTI 272
>pdb|1F4T|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4T|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
With 4- Phenylimidazole Bound
pdb|1F4U|A Chain A, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1F4U|B Chain B, Thermophilic P450: Cyp119 From Sulfolobus Solfactaricus
pdb|1IO9|A Chain A, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO9|B Chain B, Thermophilic Cytochrome P450 (cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|A Chain A, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
pdb|1IO7|B Chain B, Thermophilic Cytochrome P450 (Cyp119) From Sulfolobus
Solfataricus: High Resolution Structural Origin Of Its
Thermostability And Functional Properties
Length = 368
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 7 AFKLSGAGALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNI 66
AF+L G +F+ L ++ V ++H ++G + S V N + G I
Sbjct: 152 AFRLGKPGEIFELGKKYLELIGYV--------KDHLNSGTEVVSRVVNSNLSDIEKLGYI 203
Query: 67 ------GSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV 120
G+ TT L N D T + NLW+ ++ NL E A R+S V
Sbjct: 204 ILLLIAGNETTTNL-ISNSVIDFTRF----NLWQRIREENLYLKAIEEALRYSPPVMRTV 258
Query: 121 QKTMLEVHL-DQPI 133
+KT V L DQ I
Sbjct: 259 RKTKERVKLGDQTI 272
>pdb|1OF1|A Chain A, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
pdb|1OF1|B Chain B, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
Length = 376
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 52 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 106
>pdb|1P7C|A Chain A, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1P7C|B Chain B, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine-monophosphate
pdb|2VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine
pdb|3VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And 5-Iodo-Deoxyuridine-Monophosphate
Length = 343
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 19 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 73
>pdb|3F0T|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Dhbt
pdb|3F0T|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Dhbt
Length = 332
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 8 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 62
>pdb|1KIM|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|1KIM|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|2KI5|A Chain A, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
Length = 366
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 42 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 96
>pdb|1KI2|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1KI2|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1KI4|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
pdb|1KI4|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
pdb|1KI7|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1KI7|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1KI8|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1KI8|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1KI6|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
pdb|1KI3|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1KI3|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1E2K|A Chain A, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
pdb|1E2K|B Chain B, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
pdb|1E2H|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2H|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2I|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2I|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2M|A Chain A, Hpt + Hmtt
pdb|1E2M|B Chain B, Hpt + Hmtt
pdb|1E2N|A Chain A, Hpt + Hmtt
pdb|1E2N|B Chain B, Hpt + Hmtt
pdb|1E2P|A Chain A, Thymidine Kinase, Dhbt
pdb|1E2P|B Chain B, Thymidine Kinase, Dhbt
pdb|3RDP|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Fhbt
pdb|3RDP|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Fhbt
pdb|4IVP|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In51/20
pdb|4IVP|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In51/20
pdb|4IVQ|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In43/5
pdb|4IVQ|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In43/5
pdb|4IVR|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In52/10
pdb|4IVR|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In52/10
Length = 331
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 61
>pdb|1KI6|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
Length = 331
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 61
>pdb|1E2J|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2J|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
Length = 331
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 61
>pdb|1QHI|A Chain A, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
Length = 366
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 60 VFVEGNIGSGKTT---FLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT L DI EP+ WR + +A +Y R
Sbjct: 42 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 96
>pdb|1QO0|A Chain A, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir.
pdb|1QO0|B Chain B, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir.
pdb|1PEA|A Chain A, Amide ReceptorNEGATIVE REGULATOR OF THE AMIDASE OPERON OF
Pseudomonas Aeruginosa (Amic) Complexed With Acetamide
Length = 385
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 76 YFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITP 135
+F ++ ITA+AE W+ + LL + A W + VQ+ + ++ +D P P
Sbjct: 275 FFPENATITAWAE-AAYWQTL----LLGRAAQAAGNWRVE---DVQRHLYDIDIDAPQGP 326
Query: 136 IKMMERSIHS 145
+++ ++ HS
Sbjct: 327 VRVERQNNHS 336
>pdb|1QNL|A Chain A, Amide ReceptorNEGATIVE REGULATOR OF THE AMIDASE OPERON OF
Pseudomonas Aeruginosa (Amic) Complexed With Butyramide
Length = 385
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 76 YFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITP 135
+F ++ ITA+AE W+ + LL + A W + VQ+ + ++ +D P P
Sbjct: 275 FFPENATITAWAE-AAYWQTL----LLGRAAQAAGNWRVE---DVQRHLYDIDIDAPQGP 326
Query: 136 IKMMERSIHS 145
+++ ++ HS
Sbjct: 327 VRVERQNNHS 336
>pdb|2RAF|A Chain A, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|B Chain B, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
pdb|2RAF|C Chain C, Crystal Structure Of Putative Dinucleotide-Binding
Oxidoreductase (Np_786167.1) From Lactobacillus
Plantarum At 1.60 A Resolution
Length = 209
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTF 73
S VN K+P TV V GN S K F
Sbjct: 136 SGQVNGKEPTTVLVAGNDDSAKQRF 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,775,238
Number of Sequences: 62578
Number of extensions: 216039
Number of successful extensions: 737
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 49
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)