BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6983
(210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N0C5|KITM_MACFA Thymidine kinase 2, mitochondrial OS=Macaca fascicularis GN=TK2
PE=2 SV=1
Length = 265
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 69/96 (71%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112
+K + VEGNI SGKTT L++F+ + DI EPV+ WR+V+GHN L LMY++ASRW
Sbjct: 46 EKEKKSVICVEGNIASGKTTCLEFFSNATDIEVLTEPVSKWRNVRGHNPLGLMYQDASRW 105
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
LT QT VQ TML+ H ++ +++MERSIHSAR+
Sbjct: 106 GLTLQTYVQLTMLDRHTCPQVSSVRLMERSIHSARY 141
>sp|O00142|KITM_HUMAN Thymidine kinase 2, mitochondrial OS=Homo sapiens GN=TK2 PE=1 SV=4
Length = 265
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 68/96 (70%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112
+K + VEGNI SGKTT L++F+ + D+ EPV+ WR+V+GHN L LMY +ASRW
Sbjct: 46 EKEKKSVICVEGNIASGKTTCLEFFSNATDVEVLTEPVSKWRNVRGHNPLGLMYHDASRW 105
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
LT QT VQ TML+ H ++ +++MERSIHSAR+
Sbjct: 106 GLTLQTYVQLTMLDRHTRPQVSSVRLMERSIHSARY 141
>sp|Q9R088|KITM_MOUSE Thymidine kinase 2, mitochondrial OS=Mus musculus GN=Tk2 PE=1 SV=2
Length = 270
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112
+ +K V +EGNI SGKTT L++F+ + D+ EPV WR+V GHN L+LMY +ASRW
Sbjct: 51 DKEKKAVVCIEGNIASGKTTCLEFFSNTTDVEVLMEPVLKWRNVHGHNPLSLMYHDASRW 110
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
LT QT VQ TML+ H ++P+++MERSI+SAR+
Sbjct: 111 GLTLQTYVQLTMLDQHTRPQMSPVRLMERSIYSARY 146
>sp|Q9XZT6|DNK_DROME Deoxynucleoside kinase OS=Drosophila melanogaster GN=dnk PE=1 SV=1
Length = 250
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G NL
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW 148
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARY 112
>sp|Q16854|DGUOK_HUMAN Deoxyguanosine kinase, mitochondrial OS=Homo sapiens GN=DGUOK PE=1
SV=2
Length = 277
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS-GDITAY 86
L PF + S + R + + P + +EGNI GK+TF+ K+ +
Sbjct: 11 LRAPFSSMAKSPLEGVSSSRGLHA--GRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 68
Query: 87 AEPVNLWRDVKGH------------NLLALMYENASRWSLTFQTMVQKTMLEVHLD---- 130
EPV W++++ NLL +MY +RWS TFQT + L+V L+
Sbjct: 69 TEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPE 128
Query: 131 ---QPITPIKMMERSIHSARW 148
Q P+++ ERS++S R+
Sbjct: 129 KLLQARKPVQIFERSVYSDRY 149
>sp|P43346|DCK_MOUSE Deoxycytidine kinase OS=Mus musculus GN=Dck PE=1 SV=1
Length = 260
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAY 86
++ P C S + +S G R+ + +EGNI +GK+TF++ + S D
Sbjct: 1 MATPPKRFCPSPSTSSEGTRIKK---------ISIEGNIAAGKSTFVNILKQASEDWEVV 51
Query: 87 AEPVNLWRDVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTM 124
EPV W +V+ G N+L +MYE RWS TFQ+ Q
Sbjct: 52 PEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLAS 111
Query: 125 LEVHLDQPITPIKMMERSIHSARW 148
L L P+ ERS++S R+
Sbjct: 112 LNGKLKDAEKPVLFFERSVYSDRY 135
>sp|P27707|DCK_HUMAN Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=1 SV=1
Length = 260
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWR 94
C S + +S G R+ + +EGNI +GK+TF++ + D EPV W
Sbjct: 9 CPSFSASSEGTRIKK---------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWC 59
Query: 95 DVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTMLEVHLDQP 132
+V+ G N+L +MYE RWS TFQT Q L L
Sbjct: 60 NVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDA 119
Query: 133 ITPIKMMERSIHSARW 148
P+ ERS++S R+
Sbjct: 120 EKPVLFFERSVYSDRY 135
>sp|Q9QX60|DGUOK_MOUSE Deoxyguanosine kinase, mitochondrial OS=Mus musculus GN=Dguok PE=2
SV=3
Length = 277
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 20/112 (17%)
Query: 57 PFTVFVEGNIGSGKTTFLDYFNKSG-DITAYAEPVNLWRDVKG------------HNLLA 103
P + +EGNI GK+TF+ K+ + EP+ W++++ NLL
Sbjct: 38 PRRLCIEGNIAVGKSTFVKLLMKTHPEWQVATEPIAEWQNIQAAGAQKDGTSKRLGNLLE 97
Query: 104 LMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSIHSARW 148
+MY+ +RWS TFQT+ + L+V L+ Q +++ ERS++S R+
Sbjct: 98 MMYQEPARWSYTFQTLSFMSRLKVQLEPIPGRLLQAEKSVRVFERSVYSDRY 149
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 160 LMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSIHSARFVLV 207
+MY+ +RWS TFQT+ + L+V L+ Q +++ ERS++S R++
Sbjct: 98 MMYQEPARWSYTFQTLSFMSRLKVQLEPIPGRLLQAEKSVRVFERSVYSDRYIFA 152
>sp|Q3MHR2|DCK_BOVIN Deoxycytidine kinase OS=Bos taurus GN=DCK PE=2 SV=1
Length = 260
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 32/136 (23%)
Query: 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAYAEPVNLWR 94
C S +S G R+ + +EGNI +GK+TF++ + D EPV W
Sbjct: 9 CPSPAASSEGTRIKK---------ISIEGNIAAGKSTFVNILKQVCEDWEVVPEPVARWC 59
Query: 95 DVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTMLEVHLDQP 132
+V+ G N+L +MYE RWS TFQ+ Q L L
Sbjct: 60 NVQSTQDEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLAALNGKLKDA 119
Query: 133 ITPIKMMERSIHSARW 148
P+ ERS++S R+
Sbjct: 120 EKPVLFFERSVYSDRY 135
>sp|P48769|DCK_RAT Deoxycytidine kinase OS=Rattus norvegicus GN=Dck PE=2 SV=1
Length = 260
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 32/144 (22%)
Query: 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK-SGDITAY 86
++ P C+S + +S G R+ + +EGNI +GK+TF++ + D
Sbjct: 1 MATPPKRFCSSPSTSSEGTRIKK---------ISIEGNIAAGKSTFVNILKQVCEDWEVV 51
Query: 87 AEPVNLWRDVK---------------GHNLLALMYENASRWSLTFQTM-------VQKTM 124
EPV W +V+ G N+L +MYE RWS FQ+ Q
Sbjct: 52 PEPVARWCNVQSTQDEFEELTTSQKSGGNVLQMMYEKPERWSFIFQSYACLSRIRAQLAS 111
Query: 125 LEVHLDQPITPIKMMERSIHSARW 148
L L P+ ERS++S R+
Sbjct: 112 LNGSLRDAEKPVLFFERSVYSDRY 135
>sp|Q9J579|DCK2_FOWPN Probable deoxycytidine kinase FPV151 OS=Fowlpox virus (strain NVSL)
GN=FPV151 PE=3 SV=1
Length = 235
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 26/163 (15%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119
+ +EGNI +GK+T ++ + +G EP+ WR G+NLL +Y++ SRW+ TFQ+
Sbjct: 26 ISIEGNISAGKSTLINILSDNG-YNVVQEPLEQWR---GNNLLDKLYKDPSRWAYTFQSH 81
Query: 120 VQKTMLEVHLDQPITPIK---MMERSIHSARWELTQCQICSQAL------------MYEN 164
T + ++D + K ++ERS+ S ++ I + AL +Y
Sbjct: 82 AFWTRTKTYID-ALNKNKGNIILERSVFSDKY------IFATALHDIGYIDDTEWNIYNE 134
Query: 165 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARFVLV 207
S+W F + ++ + I +M+ R+ H V +
Sbjct: 135 YSKWMTEFMDIKIDGIIYLKTSPDICYKRMLNRARHEENTVKI 177
>sp|P21974|DCK1_FOWPN Probable deoxycytidine kinase FPV059 OS=Fowlpox virus (strain NVSL)
GN=FPV059 PE=3 SV=1
Length = 219
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109
S+N + +EGNI SGKT L+ ++ ++ + + + ++ L+ +EN
Sbjct: 2 DSINEFTSKKLSIEGNISSGKTDVLNILRNINNVVSFHDVEDRYTPIEKE-LIRKFHENP 60
Query: 110 SRWSLTFQTMVQKTMLEVHLDQPI-TPIKMMERSIHSARWELTQCQICSQALMYENASRW 168
SRWS QT + +HL+ + + + ++ERSI S R+ + + AL Y + W
Sbjct: 61 SRWSYALQTHYCMKRVRMHLECFVPSRVNILERSIFSDRYVFAE---AATALGYMDDPEW 117
Query: 169 SL 170
+L
Sbjct: 118 AL 119
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 161 MYENASRWSLTFQTMVQKTMLEVHLDQPI-TPIKMMERSIHSARFVL 206
+EN SRWS QT + +HL+ + + + ++ERSI S R+V
Sbjct: 56 FHENPSRWSYALQTHYCMKRVRMHLECFVPSRVNILERSIFSDRYVF 102
>sp|P28855|KITH_ICHVA Thymidine kinase OS=Ictalurid herpesvirus 1 (strain Auburn) GN=TK
PE=3 SV=1
Length = 228
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 62 VEGNIGSGKTTF----LDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQ 117
VEGNIG GK+T ++ SG + EPV+ W + G N L L Y + + +++ FQ
Sbjct: 21 VEGNIGCGKSTLVKALMERVAGSG-VNVVEEPVDQWVNHNGKNYLELSYTDPTGYAVPFQ 79
Query: 118 TMVQKTMLEVH-LDQPITPIKMMERSIHSA 146
+V + + V L P +MERS SA
Sbjct: 80 NLVFDSYVNVQRLQNP----DIMERSPMSA 105
>sp|P21293|KITH_SHV21 Thymidine kinase OS=Saimiriine herpesvirus 2 (strain 11) GN=21 PE=3
SV=1
Length = 527
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 58 FTVFVEGNIGSGKTTFLDYFN---KSGDITAYAEPVNLWRDVKGHNL 101
F +F+EG+IG GKTT L N ++ A+ EP+ W DV ++L
Sbjct: 210 FFIFLEGSIGVGKTTLLKSMNGILGGKNVLAFHEPIAYWTDVFSNSL 256
>sp|Q66624|KITH_EHV2 Thymidine kinase OS=Equine herpesvirus 2 (strain 86/87) GN=21 PE=3
SV=1
Length = 613
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNK-SGD-ITAYAEPVNLWRDVKGHNLLALMYENASRW 112
K F +++EG++G GKTT + + + +GD + ++ EP+ WR+V + + L+Y +
Sbjct: 292 KNAFFLYLEGSMGVGKTTLIRHMREINGDNVISFVEPMFYWREVYS-DCVKLIYSACKPF 350
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIH 144
+L + K +L + + +TP+K ++ S+
Sbjct: 351 NLG-KMSTSKKVLSAQM-KFMTPMKCLQTSVR 380
>sp|Q18LE8|KITH_ELHVK Thymidine kinase OS=Elephantid herpesvirus 1 (isolate Asian
elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 356
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI-TAYAEPVNLWRDVKGHNLLALMYE 107
++ TV++EG +G GKTT Y + + TAY EP++ W N+L ++E
Sbjct: 52 QRHLTVYLEGCVGVGKTTMFKYVVDNMFVHTAYDEPMDHWTKWFPENILQTIHE 105
>sp|Q197D1|VF143_IIV3 Putative kinase protein 029R OS=Invertebrate iridescent virus 3
GN=IIV3-029R PE=3 SV=1
Length = 193
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQ 117
+ + +EG IGSGK++ +D + T + EP++ W +LL Y++ R++ FQ
Sbjct: 3 YVISIEGIIGSGKSSLMDQLKRH--YTCHQEPLHDW------SLLQPFYDDMERYASPFQ 54
Query: 118 TMV 120
V
Sbjct: 55 FQV 57
>sp|P0C0E6|KITH_VZVO Thymidine kinase OS=Varicella-zoster virus (strain Oka vaccine)
GN=ORF36 PE=1 SV=1
Length = 341
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 60 VFVEGNIGSGKTT----FLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASR 111
++++G G GKTT FL +F + + I EP++ WR++ G + + +Y +R
Sbjct: 15 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTR 71
>sp|P09250|KITH_VZVD Thymidine kinase OS=Varicella-zoster virus (strain Dumas) GN=ORF36
PE=3 SV=1
Length = 341
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 60 VFVEGNIGSGKTT----FLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASR 111
++++G G GKTT FL +F + + I EP++ WR++ G + + +Y +R
Sbjct: 15 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTR 71
>sp|P03177|KITH_EBVB9 Thymidine kinase OS=Epstein-Barr virus (strain B95-8) GN=TK PE=3
SV=2
Length = 607
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 59 TVFVEGNIGSGKTTFLDYFNKS-GDIT-AYAEPVNLWRDVKGHNLLALMYENASR 111
++F+EG G GKTT L++ GD+T EP+ W V N + M++N +R
Sbjct: 286 SLFLEGAPGVGKTTMLNHLKAVFGDLTIVVPEPMRYWTHVY-ENAIKAMHKNVTR 339
>sp|Q3KSQ2|KITH_EBVG Thymidine kinase OS=Epstein-Barr virus (strain GD1) GN=TK PE=1 SV=1
Length = 607
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 59 TVFVEGNIGSGKTTFLDYFNKS-GDIT-AYAEPVNLWRDVKGHNLLALMYENASR 111
++F+EG G GKTT L++ GD+T EP+ W V N + M++N +R
Sbjct: 286 SLFLEGAPGVGKTTMLNHLKAVFGDLTIVVPEPMRYWTHVY-ENAIKAMHKNVTR 339
>sp|Q1HVD1|KITH_EBVA8 Thymidine kinase OS=Epstein-Barr virus (strain AG876) GN=TK PE=3
SV=1
Length = 607
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 59 TVFVEGNIGSGKTTFLDYFNKS-GDIT-AYAEPVNLWRDVKGHNLLALMYENASR 111
++F+EG G GKTT L++ GD+T EP+ W V N + M++N +R
Sbjct: 286 SLFLEGAPGVGKTTMLNHLKAVFGDLTIVVPEPMRYWTHVY-ENAIKAMHKNVTR 339
>sp|Q9ZF69|COAE_BURPS Dephospho-CoA kinase OS=Burkholderia pseudomallei (strain K96243)
GN=coaE PE=3 SV=2
Length = 203
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNKSG 81
F+V + G IGSGKTT D F K G
Sbjct: 2 FSVGLTGGIGSGKTTVADLFGKLG 25
>sp|Q3JNF3|COAE_BURP1 Dephospho-CoA kinase OS=Burkholderia pseudomallei (strain 1710b)
GN=coaE PE=3 SV=1
Length = 203
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNKSG 81
F+V + G IGSGKTT D F K G
Sbjct: 2 FSVGLTGGIGSGKTTVADLFGKLG 25
>sp|Q62GU3|COAE_BURMA Dephospho-CoA kinase OS=Burkholderia mallei (strain ATCC 23344)
GN=coaE PE=3 SV=1
Length = 203
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNKSG 81
F+V + G IGSGKTT D F K G
Sbjct: 2 FSVGLTGGIGSGKTTVADLFGKLG 25
>sp|Q9ZEL7|COAE_PSEST Dephospho-CoA kinase OS=Pseudomonas stutzeri GN=coaE PE=3 SV=1
Length = 202
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 36/143 (25%)
Query: 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLT 115
KP+ + + G IGSGK+ ++ F + G V+ W D ++A+RW +
Sbjct: 2 KPWILGLTGGIGSGKSAVVEQFGRLG--------VH-WVDA----------DHAARWVVE 42
Query: 116 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENAS--RW-SLTF 172
+ E D +TP ++R++ AR ++ENA RW
Sbjct: 43 PGKPALARIAEHFGDGVLTPAGELDRAVLRAR-------------VFENAGERRWLEQLL 89
Query: 173 QTMVQKTMLEVHLDQPITPIKMM 195
++++ + E HL + +P ++
Sbjct: 90 HPLIRQEIAE-HLSRAQSPYAIL 111
>sp|P45275|Y1618_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_1618
OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=HI_1618 PE=3 SV=1
Length = 217
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 35 LCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFL 74
LC +N + + +S ++ +K +FV+G IGSGKTT L
Sbjct: 19 LCIERNGRAIIQDLSFTLEGQK--RLFVQGEIGSGKTTLL 56
>sp|Q1XDN0|IF2C_PORYE Translation initiation factor IF-2, chloroplastic OS=Porphyra
yezoensis GN=infB PE=3 SV=1
Length = 768
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82
K+P V V G++ GKTT LDY KS +
Sbjct: 261 KRPPIVTVMGHVDHGKTTLLDYIRKSNN 288
>sp|Q55080|CP119_SULAC Cytochrome P450 119 OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=cyp119 PE=1 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 7 AFKLSGAGALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNI 66
AF+L G +F+ L ++ V ++H ++G + S V N + G I
Sbjct: 152 AFRLGKPGEIFELGKKYLELIGYV--------KDHLNSGTEVVSRVVNSNLSDIEKLGYI 203
Query: 67 ------GSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV 120
G+ TT L N D T + NLW+ ++ NL E A R+S V
Sbjct: 204 ILLLIAGNETTTNL-ISNSVIDFTRF----NLWQRIREENLYLKAIEEALRYSPPVMRTV 258
Query: 121 QKTMLEVHL-DQPI 133
+KT V L DQ I
Sbjct: 259 RKTKERVKLGDQTI 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,908,177
Number of Sequences: 539616
Number of extensions: 2680648
Number of successful extensions: 10318
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10272
Number of HSP's gapped (non-prelim): 46
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)