Query psy6983
Match_columns 210
No_of_seqs 240 out of 2281
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:48:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 7.8E-30 1.7E-34 206.4 8.4 167 31-208 4-192 (240)
2 COG1116 TauB ABC-type nitrate/ 99.9 2.2E-24 4.7E-29 178.4 9.3 158 32-207 6-185 (248)
3 COG3842 PotA ABC-type spermidi 99.9 4E-24 8.7E-29 186.2 7.0 145 30-189 6-165 (352)
4 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.4E-23 7.3E-28 172.9 10.2 165 30-209 5-196 (254)
5 COG1117 PstB ABC-type phosphat 99.9 1.4E-23 3.1E-28 169.7 6.4 172 30-207 8-203 (253)
6 COG3638 ABC-type phosphate/pho 99.9 4.2E-23 9.1E-28 169.2 8.5 137 50-193 23-182 (258)
7 KOG4235|consensus 99.9 1.6E-22 3.6E-27 160.9 11.4 144 59-204 24-177 (244)
8 COG2884 FtsE Predicted ATPase 99.9 7.5E-23 1.6E-27 162.8 8.5 167 32-208 4-193 (223)
9 COG1127 Ttg2A ABC-type transpo 99.9 9.5E-23 2.1E-27 167.5 9.1 163 30-201 9-194 (263)
10 COG3839 MalK ABC-type sugar tr 99.9 5.2E-23 1.1E-27 178.3 7.9 145 30-189 4-162 (338)
11 COG1428 Deoxynucleoside kinase 99.9 5.4E-22 1.2E-26 160.4 11.8 140 58-205 5-151 (216)
12 COG1125 OpuBA ABC-type proline 99.9 1E-22 2.3E-27 168.6 6.2 164 31-207 3-190 (309)
13 COG1120 FepC ABC-type cobalami 99.9 2.1E-22 4.7E-27 168.7 8.1 165 32-208 5-195 (258)
14 COG1136 SalX ABC-type antimicr 99.9 2.2E-22 4.7E-27 165.6 7.8 152 50-208 24-199 (226)
15 COG4598 HisP ABC-type histidin 99.9 7E-22 1.5E-26 156.5 9.2 173 34-208 11-208 (256)
16 COG1135 AbcC ABC-type metal io 99.9 1.1E-21 2.3E-26 166.4 8.4 146 50-203 25-192 (339)
17 COG1118 CysA ABC-type sulfate/ 99.8 3.4E-21 7.5E-26 163.1 10.0 165 33-208 6-194 (345)
18 COG0444 DppD ABC-type dipeptid 99.8 2.1E-21 4.6E-26 165.6 6.4 158 50-208 24-210 (316)
19 PRK11650 ugpC glycerol-3-phosp 99.8 8.9E-21 1.9E-25 166.9 6.6 162 32-208 6-191 (356)
20 PRK11432 fbpC ferric transport 99.8 1.3E-20 2.9E-25 165.5 7.6 164 30-208 7-193 (351)
21 COG4175 ProV ABC-type proline/ 99.8 1.9E-20 4.1E-25 159.2 8.0 169 14-189 8-193 (386)
22 COG1131 CcmA ABC-type multidru 99.8 1.6E-20 3.4E-25 161.3 7.4 169 31-208 6-193 (293)
23 COG1124 DppF ABC-type dipeptid 99.8 4.3E-20 9.3E-25 152.1 9.4 132 44-189 22-170 (252)
24 PRK09452 potA putrescine/sperm 99.8 2E-20 4.3E-25 165.7 7.8 165 30-209 15-202 (375)
25 COG1123 ATPase components of v 99.8 2.6E-20 5.6E-25 169.1 8.2 157 50-208 28-211 (539)
26 TIGR02314 ABC_MetN D-methionin 99.8 3.3E-20 7.1E-25 162.5 8.5 152 50-209 24-198 (343)
27 COG4181 Predicted ABC-type tra 99.8 5.8E-20 1.3E-24 144.5 8.7 133 50-189 29-175 (228)
28 TIGR03265 PhnT2 putative 2-ami 99.8 2.8E-20 6.1E-25 163.6 7.2 163 31-208 6-191 (353)
29 TIGR00960 3a0501s02 Type II (G 99.8 8.7E-20 1.9E-24 149.6 9.1 153 50-209 22-195 (216)
30 cd03262 ABC_HisP_GlnQ_permease 99.8 7E-20 1.5E-24 149.6 8.3 168 34-209 5-192 (213)
31 PRK13537 nodulation ABC transp 99.8 5.1E-20 1.1E-24 159.0 7.3 170 30-208 8-194 (306)
32 PRK10851 sulfate/thiosulfate t 99.8 4E-20 8.6E-25 162.6 6.7 163 33-209 6-194 (353)
33 cd03261 ABC_Org_Solvent_Resist 99.8 8E-20 1.7E-24 151.7 7.6 169 33-209 4-194 (235)
34 TIGR03258 PhnT 2-aminoethylpho 99.8 3.3E-20 7.2E-25 163.6 5.6 169 32-208 8-195 (362)
35 cd03266 ABC_NatA_sodium_export 99.8 1.3E-19 2.8E-24 148.6 8.1 153 50-209 24-193 (218)
36 cd03265 ABC_DrrA DrrA is the A 99.8 9E-20 1.9E-24 150.0 7.1 167 34-209 5-189 (220)
37 PRK11022 dppD dipeptide transp 99.8 7.6E-20 1.6E-24 159.3 6.0 158 50-209 26-211 (326)
38 cd03269 ABC_putative_ATPase Th 99.8 2.6E-19 5.6E-24 146.2 8.7 150 50-209 19-185 (210)
39 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 3.5E-19 7.6E-24 146.1 9.4 153 50-209 23-198 (218)
40 PRK15079 oligopeptide ABC tran 99.8 2.3E-19 5E-24 156.5 7.9 153 50-209 40-219 (331)
41 PRK13536 nodulation factor exp 99.8 1.3E-19 2.9E-24 158.5 6.4 170 30-208 42-228 (340)
42 TIGR01288 nodI ATP-binding ABC 99.8 1.7E-19 3.8E-24 155.4 7.0 169 32-209 7-192 (303)
43 COG1122 CbiO ABC-type cobalt t 99.8 2E-19 4.3E-24 149.7 7.0 168 31-209 5-196 (235)
44 cd03219 ABC_Mj1267_LivG_branch 99.8 2.9E-19 6.4E-24 148.2 7.6 166 33-209 4-200 (236)
45 PRK11264 putative amino-acid A 99.8 3.9E-19 8.4E-24 148.8 8.4 174 32-209 6-201 (250)
46 cd03259 ABC_Carb_Solutes_like 99.8 4.4E-19 9.5E-24 145.1 8.5 167 33-209 4-188 (213)
47 TIGR01188 drrA daunorubicin re 99.8 2.5E-19 5.4E-24 154.4 7.4 153 50-209 12-181 (302)
48 PRK11308 dppF dipeptide transp 99.8 2.8E-19 6E-24 155.8 7.6 153 50-209 34-212 (327)
49 TIGR03415 ABC_choXWV_ATP choli 99.8 3.4E-19 7.3E-24 158.0 8.3 189 15-209 5-222 (382)
50 cd03235 ABC_Metallic_Cations A 99.8 1.7E-18 3.7E-23 141.6 11.8 150 50-209 18-189 (213)
51 cd03263 ABC_subfamily_A The AB 99.8 4E-19 8.7E-24 145.9 8.0 166 33-208 4-188 (220)
52 TIGR01186 proV glycine betaine 99.8 5E-19 1.1E-23 156.0 9.2 152 50-209 12-187 (363)
53 PRK11153 metN DL-methionine tr 99.8 3.2E-19 7E-24 156.3 7.8 152 50-209 24-198 (343)
54 cd03260 ABC_PstB_phosphate_tra 99.8 8.7E-19 1.9E-23 144.7 9.8 171 33-209 4-197 (227)
55 COG0411 LivG ABC-type branched 99.8 7.5E-20 1.6E-24 150.7 3.5 166 33-209 8-207 (250)
56 PRK09493 glnQ glutamine ABC tr 99.8 3.9E-19 8.4E-24 148.0 7.8 169 33-209 5-193 (240)
57 TIGR02673 FtsE cell division A 99.8 8E-19 1.7E-23 143.6 9.4 168 33-209 5-194 (214)
58 PRK11607 potG putrescine trans 99.8 2.7E-19 5.8E-24 158.6 7.1 164 30-208 20-206 (377)
59 cd03301 ABC_MalK_N The N-termi 99.8 5.3E-19 1.1E-23 144.5 8.2 167 33-209 4-188 (213)
60 PRK11124 artP arginine transpo 99.8 6E-19 1.3E-23 147.1 8.6 170 32-209 5-198 (242)
61 TIGR02315 ABC_phnC phosphonate 99.8 1.2E-18 2.6E-23 145.2 10.3 169 33-209 5-203 (243)
62 PRK11000 maltose/maltodextrin 99.8 3.2E-19 6.8E-24 157.8 6.9 164 31-209 5-191 (369)
63 PRK10908 cell division protein 99.8 1.2E-18 2.6E-23 143.4 9.5 153 50-209 21-194 (222)
64 cd03292 ABC_FtsE_transporter F 99.8 8.2E-19 1.8E-23 143.4 8.4 152 50-209 20-193 (214)
65 TIGR03608 L_ocin_972_ABC putat 99.8 1.4E-18 3E-23 141.2 9.6 153 50-209 17-191 (206)
66 PRK10070 glycine betaine trans 99.8 6.4E-19 1.4E-23 157.1 8.3 185 15-209 9-222 (400)
67 cd03268 ABC_BcrA_bacitracin_re 99.8 9.1E-19 2E-23 142.7 8.5 162 34-209 5-183 (208)
68 COG4161 ArtP ABC-type arginine 99.8 1.3E-18 2.9E-23 135.9 8.8 170 33-208 6-197 (242)
69 PRK09536 btuD corrinoid ABC tr 99.8 1.2E-18 2.6E-23 155.4 9.5 169 32-208 6-195 (402)
70 PRK11629 lolD lipoprotein tran 99.8 1.2E-18 2.7E-23 144.5 8.9 171 32-209 8-203 (233)
71 PRK09473 oppD oligopeptide tra 99.8 8.8E-19 1.9E-23 152.9 8.4 173 32-209 15-219 (330)
72 PRK10619 histidine/lysine/argi 99.8 6.9E-19 1.5E-23 148.1 7.3 176 31-209 7-209 (257)
73 TIGR03005 ectoine_ehuA ectoine 99.8 1.3E-18 2.7E-23 146.0 8.8 176 32-209 3-204 (252)
74 cd03218 ABC_YhbG The ABC trans 99.8 8.2E-19 1.8E-23 145.2 7.6 164 34-209 5-190 (232)
75 COG3840 ThiQ ABC-type thiamine 99.8 2.5E-18 5.4E-23 136.4 9.5 149 47-208 15-186 (231)
76 cd03224 ABC_TM1139_LivF_branch 99.8 1.1E-18 2.4E-23 143.4 7.8 163 33-209 4-189 (222)
77 cd03293 ABC_NrtD_SsuB_transpor 99.8 9.5E-19 2.1E-23 143.9 7.4 149 50-209 23-189 (220)
78 PRK11831 putative ABC transpor 99.8 9.2E-19 2E-23 148.4 7.4 171 31-209 9-201 (269)
79 PRK13635 cbiO cobalt transport 99.8 1.9E-18 4.1E-23 147.4 9.3 166 31-209 7-198 (279)
80 cd03225 ABC_cobalt_CbiO_domain 99.8 1.5E-18 3.3E-23 141.6 8.3 153 50-209 20-191 (211)
81 cd03256 ABC_PhnC_transporter A 99.8 1.2E-18 2.6E-23 144.9 7.8 169 33-209 4-202 (241)
82 cd03258 ABC_MetN_methionine_tr 99.8 1.6E-18 3.4E-23 143.7 8.3 152 50-209 24-198 (233)
83 PRK13647 cbiO cobalt transport 99.8 1.6E-18 3.5E-23 147.4 8.4 165 32-209 7-195 (274)
84 PRK13538 cytochrome c biogenes 99.8 1.1E-18 2.3E-23 142.1 7.0 150 50-209 20-186 (204)
85 PRK10895 lipopolysaccharide AB 99.8 2.9E-18 6.2E-23 142.9 9.7 166 32-209 6-194 (241)
86 PRK13650 cbiO cobalt transport 99.8 2.1E-18 4.6E-23 147.0 9.0 167 32-209 7-198 (279)
87 cd03226 ABC_cobalt_CbiO_domain 99.8 3.5E-18 7.7E-23 139.0 9.9 147 50-209 19-183 (205)
88 cd03296 ABC_CysA_sulfate_impor 99.8 1.2E-18 2.5E-23 145.2 7.0 169 32-209 5-194 (239)
89 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.4E-18 3.1E-23 144.9 7.5 168 33-209 4-193 (242)
90 TIGR02211 LolD_lipo_ex lipopro 99.8 1.9E-18 4.2E-23 142.0 8.1 153 50-209 24-199 (221)
91 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.1E-18 4.5E-23 146.3 8.5 186 15-209 5-218 (269)
92 PRK13638 cbiO cobalt transport 99.8 2E-18 4.3E-23 146.5 8.0 165 33-209 5-193 (271)
93 PRK11248 tauB taurine transpor 99.8 2.2E-18 4.8E-23 145.2 8.1 164 33-209 5-186 (255)
94 COG4525 TauB ABC-type taurine 99.8 2.6E-18 5.6E-23 137.8 7.9 160 33-208 7-189 (259)
95 TIGR03522 GldA_ABC_ATP gliding 99.8 9.8E-19 2.1E-23 150.7 6.0 167 32-208 5-188 (301)
96 COG4555 NatA ABC-type Na+ tran 99.8 2.2E-18 4.7E-23 138.7 7.4 151 50-207 21-188 (245)
97 PRK10584 putative ABC transpor 99.8 4.2E-18 9.1E-23 140.7 9.4 170 32-209 9-204 (228)
98 COG3845 ABC-type uncharacteriz 99.7 3.3E-18 7.2E-23 152.5 9.3 166 33-209 8-197 (501)
99 cd03264 ABC_drug_resistance_li 99.7 1.9E-18 4.1E-23 141.1 7.1 165 34-209 5-186 (211)
100 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.5E-18 3.2E-23 144.3 6.6 153 50-209 20-190 (236)
101 cd03298 ABC_ThiQ_thiamine_tran 99.7 2.6E-18 5.6E-23 140.4 7.8 153 49-209 16-186 (211)
102 TIGR01189 ccmA heme ABC export 99.7 2.6E-18 5.7E-23 139.2 7.6 163 34-209 5-184 (198)
103 PRK13643 cbiO cobalt transport 99.7 3.3E-18 7.2E-23 146.5 8.6 153 49-209 24-201 (288)
104 cd03231 ABC_CcmA_heme_exporter 99.7 3.2E-18 7E-23 139.1 8.0 147 50-209 19-182 (201)
105 COG0410 LivF ABC-type branched 99.7 2.3E-18 4.9E-23 141.0 7.0 164 32-210 6-195 (237)
106 PRK10771 thiQ thiamine transpo 99.7 4.6E-18 1E-22 140.9 8.7 166 32-209 4-187 (232)
107 PRK15093 antimicrobial peptide 99.7 3.6E-18 7.8E-23 149.0 8.4 158 50-209 26-216 (330)
108 PRK13640 cbiO cobalt transport 99.7 4.7E-18 1E-22 145.1 8.7 174 32-209 8-201 (282)
109 TIGR00972 3a0107s01c2 phosphat 99.7 4E-18 8.7E-23 142.6 8.0 171 33-209 5-200 (247)
110 PRK13631 cbiO cobalt transport 99.7 6.7E-18 1.5E-22 146.7 9.6 175 30-209 22-233 (320)
111 PRK13644 cbiO cobalt transport 99.7 7.5E-18 1.6E-22 143.3 9.7 153 50-209 21-193 (274)
112 TIGR02142 modC_ABC molybdenum 99.7 2.6E-18 5.6E-23 151.2 7.0 152 49-209 15-189 (354)
113 PRK13634 cbiO cobalt transport 99.7 6.3E-18 1.4E-22 144.9 9.2 152 50-209 26-203 (290)
114 TIGR02868 CydC thiol reductant 99.7 1.3E-17 2.9E-22 153.4 11.9 166 29-209 334-526 (529)
115 TIGR01166 cbiO cobalt transpor 99.7 6E-18 1.3E-22 136.1 8.4 152 50-209 11-184 (190)
116 PRK13651 cobalt transporter AT 99.7 6.9E-18 1.5E-22 145.8 9.2 158 50-209 26-222 (305)
117 PRK13637 cbiO cobalt transport 99.7 7.3E-18 1.6E-22 144.3 9.2 148 50-209 26-202 (287)
118 PRK11300 livG leucine/isoleuci 99.7 5E-18 1.1E-22 142.5 7.6 167 32-209 8-211 (255)
119 PRK11614 livF leucine/isoleuci 99.7 6.1E-18 1.3E-22 140.6 8.0 167 32-209 8-194 (237)
120 TIGR02769 nickel_nikE nickel i 99.7 7.4E-18 1.6E-22 142.6 8.6 154 49-209 29-208 (265)
121 TIGR01277 thiQ thiamine ABC tr 99.7 5.9E-18 1.3E-22 138.6 7.6 153 49-209 16-186 (213)
122 PRK10762 D-ribose transporter 99.7 8.3E-18 1.8E-22 154.0 9.3 167 32-209 7-198 (501)
123 cd03257 ABC_NikE_OppD_transpor 99.7 5.9E-18 1.3E-22 139.5 7.3 152 50-209 24-203 (228)
124 PRK10253 iron-enterobactin tra 99.7 6.8E-18 1.5E-22 142.8 7.8 172 30-209 8-201 (265)
125 PRK11247 ssuB aliphatic sulfon 99.7 8.4E-18 1.8E-22 141.9 8.2 161 30-209 13-191 (257)
126 PRK10261 glutathione transport 99.7 8.5E-18 1.8E-22 157.7 9.0 175 32-209 15-226 (623)
127 PRK14250 phosphate ABC transpo 99.7 1.7E-17 3.6E-22 138.5 9.8 165 31-209 5-189 (241)
128 PRK13632 cbiO cobalt transport 99.7 1.1E-17 2.4E-22 142.0 8.8 169 32-209 10-200 (271)
129 PRK09700 D-allose transporter 99.7 1E-17 2.3E-22 153.6 9.1 167 32-209 8-202 (510)
130 COG4172 ABC-type uncharacteriz 99.7 4.5E-18 9.7E-23 148.8 6.0 139 42-189 300-455 (534)
131 PRK11231 fecE iron-dicitrate t 99.7 9.4E-18 2E-22 141.0 7.8 170 32-209 5-195 (255)
132 PRK10575 iron-hydroxamate tran 99.7 9.5E-18 2.1E-22 141.9 7.9 172 30-209 12-205 (265)
133 TIGR02982 heterocyst_DevA ABC 99.7 9.6E-18 2.1E-22 138.0 7.7 153 50-209 24-199 (220)
134 PRK13549 xylose transporter AT 99.7 2.1E-17 4.5E-22 151.6 10.6 173 31-209 7-200 (506)
135 PRK13648 cbiO cobalt transport 99.7 1.4E-17 2.9E-22 141.2 8.6 173 30-209 8-200 (269)
136 PRK13646 cbiO cobalt transport 99.7 1.7E-17 3.7E-22 141.9 9.3 152 50-209 26-203 (286)
137 PRK09984 phosphonate/organopho 99.7 1.2E-17 2.7E-22 140.8 8.2 173 32-209 7-210 (262)
138 cd03297 ABC_ModC_molybdenum_tr 99.7 1.4E-17 3.1E-22 136.4 8.3 151 49-209 16-189 (214)
139 PRK13540 cytochrome c biogenes 99.7 9.5E-18 2E-22 136.2 7.1 163 33-209 5-184 (200)
140 TIGR01978 sufC FeS assembly AT 99.7 8.2E-18 1.8E-22 140.0 6.9 171 33-209 4-201 (243)
141 COG4152 ABC-type uncharacteriz 99.7 1E-17 2.3E-22 138.2 7.3 165 31-207 4-185 (300)
142 PRK14273 phosphate ABC transpo 99.7 1.4E-17 3.1E-22 139.8 8.3 173 31-209 9-206 (254)
143 PRK13636 cbiO cobalt transport 99.7 1.5E-17 3.2E-22 142.1 8.5 169 31-209 7-199 (283)
144 PRK13633 cobalt transporter AT 99.7 1.8E-17 3.9E-22 141.3 9.0 167 32-209 7-202 (280)
145 TIGR03410 urea_trans_UrtE urea 99.7 1E-17 2.2E-22 138.6 7.1 161 33-208 4-188 (230)
146 PRK13639 cbiO cobalt transport 99.7 1.6E-17 3.4E-22 141.4 8.4 150 50-209 21-194 (275)
147 PRK10982 galactose/methyl gala 99.7 3.3E-17 7.2E-22 149.7 11.0 165 34-209 3-191 (491)
148 COG1123 ATPase components of v 99.7 1.1E-17 2.5E-22 152.0 7.8 136 50-193 310-464 (539)
149 PRK14247 phosphate ABC transpo 99.7 9.6E-18 2.1E-22 140.4 6.8 174 32-209 6-202 (250)
150 PRK11144 modC molybdate transp 99.7 1E-17 2.2E-22 147.4 7.1 148 49-209 16-186 (352)
151 PRK14241 phosphate transporter 99.7 9.5E-18 2.1E-22 141.2 6.5 174 31-209 6-204 (258)
152 PRK15112 antimicrobial peptide 99.7 2.4E-17 5.2E-22 139.6 8.7 150 49-209 31-207 (267)
153 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 3.9E-17 8.4E-22 155.2 11.0 167 29-209 477-669 (710)
154 TIGR03740 galliderm_ABC gallid 99.7 2E-17 4.3E-22 136.3 7.7 146 50-209 19-181 (223)
155 PRK13641 cbiO cobalt transport 99.7 4.6E-17 9.9E-22 139.4 10.2 152 50-209 26-202 (287)
156 PRK13649 cbiO cobalt transport 99.7 4.3E-17 9.3E-22 138.8 10.0 152 50-209 26-202 (280)
157 PRK14240 phosphate transporter 99.7 2E-17 4.3E-22 138.5 7.8 173 31-209 5-202 (250)
158 PRK15439 autoinducer 2 ABC tra 99.7 2.3E-17 5E-22 151.5 8.8 164 30-209 12-197 (510)
159 PRK13543 cytochrome c biogenes 99.7 1.9E-17 4.2E-22 135.8 7.5 165 31-209 13-194 (214)
160 cd03300 ABC_PotA_N PotA is an 99.7 1.5E-17 3.3E-22 137.9 6.9 167 33-209 4-188 (232)
161 PRK10247 putative ABC transpor 99.7 2.1E-17 4.5E-22 136.6 7.7 163 31-209 9-195 (225)
162 PRK13548 hmuV hemin importer A 99.7 1.6E-17 3.5E-22 140.0 7.0 168 33-209 6-198 (258)
163 TIGR03873 F420-0_ABC_ATP propo 99.7 1.5E-17 3.2E-22 139.9 6.8 169 33-209 5-194 (256)
164 PRK13642 cbiO cobalt transport 99.7 2.9E-17 6.3E-22 139.9 8.6 167 32-209 7-198 (277)
165 TIGR02324 CP_lyasePhnL phospho 99.7 2.4E-17 5.2E-22 135.8 7.8 153 50-209 27-206 (224)
166 PRK11288 araG L-arabinose tran 99.7 2.1E-17 4.5E-22 151.4 8.2 167 32-209 7-197 (501)
167 PRK15056 manganese/iron transp 99.7 4.7E-17 1E-21 138.2 9.8 170 30-209 7-199 (272)
168 COG4167 SapF ABC-type antimicr 99.7 2.8E-17 6.2E-22 130.8 7.8 138 43-189 27-178 (267)
169 PRK14267 phosphate ABC transpo 99.7 2.1E-17 4.5E-22 138.6 7.4 173 32-209 7-205 (253)
170 PRK14242 phosphate transporter 99.7 1.8E-17 4E-22 139.0 6.9 174 30-209 7-205 (253)
171 cd03234 ABCG_White The White s 99.7 2.8E-17 6E-22 135.8 7.8 173 31-208 5-199 (226)
172 PRK14258 phosphate ABC transpo 99.7 2.7E-17 5.9E-22 138.8 7.9 176 29-209 7-208 (261)
173 TIGR03411 urea_trans_UrtD urea 99.7 2.3E-17 5E-22 137.4 7.4 164 33-208 6-198 (242)
174 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 4.8E-17 1E-21 154.1 10.3 161 29-208 451-641 (686)
175 PRK10744 pstB phosphate transp 99.7 3.1E-17 6.8E-22 138.3 7.9 173 30-208 14-211 (260)
176 PRK10419 nikE nickel transport 99.7 3.9E-17 8.5E-22 138.4 8.5 155 49-209 30-209 (268)
177 PRK14237 phosphate transporter 99.7 4.6E-17 9.9E-22 137.9 8.8 174 30-209 21-219 (267)
178 TIGR02633 xylG D-xylose ABC tr 99.7 5.5E-17 1.2E-21 148.5 10.0 171 33-209 5-198 (500)
179 cd02030 NDUO42 NADH:Ubiquinone 99.7 1.2E-16 2.5E-21 131.9 10.9 143 59-204 1-166 (219)
180 cd01673 dNK Deoxyribonucleosid 99.7 1.3E-16 2.8E-21 128.5 10.9 141 59-204 1-148 (193)
181 PRK14246 phosphate ABC transpo 99.7 3E-17 6.6E-22 138.4 7.5 178 30-209 11-209 (257)
182 TIGR00968 3a0106s01 sulfate AB 99.7 5.2E-17 1.1E-21 135.2 8.7 161 34-209 5-188 (237)
183 PRK11701 phnK phosphonate C-P 99.7 5.3E-17 1.1E-21 136.7 8.8 171 30-209 7-209 (258)
184 TIGR01184 ntrCD nitrate transp 99.7 3.3E-17 7.1E-22 135.9 7.3 150 50-209 4-172 (230)
185 PRK14269 phosphate ABC transpo 99.7 4.8E-17 1.1E-21 136.0 8.3 169 33-209 6-198 (246)
186 TIGR03771 anch_rpt_ABC anchore 99.7 1.5E-16 3.3E-21 131.3 11.1 147 53-209 2-170 (223)
187 PRK13539 cytochrome c biogenes 99.7 3E-17 6.5E-22 134.0 6.7 161 33-209 6-184 (207)
188 COG2274 SunT ABC-type bacterio 99.7 8E-17 1.7E-21 152.2 10.5 165 28-208 470-664 (709)
189 PRK15134 microcin C ABC transp 99.7 6.5E-17 1.4E-21 149.0 9.7 175 32-209 8-214 (529)
190 PRK14271 phosphate ABC transpo 99.7 3.7E-17 8E-22 139.2 7.4 174 31-209 23-219 (276)
191 PRK14262 phosphate ABC transpo 99.7 5.7E-17 1.2E-21 135.8 8.2 172 32-209 6-202 (250)
192 PRK14261 phosphate ABC transpo 99.7 9.8E-17 2.1E-21 134.6 9.6 174 30-209 7-205 (253)
193 PRK14256 phosphate ABC transpo 99.7 4.1E-17 9E-22 136.8 6.9 174 31-209 6-204 (252)
194 PRK13652 cbiO cobalt transport 99.7 4.1E-17 8.9E-22 139.0 6.9 164 32-209 6-195 (277)
195 PRK13547 hmuV hemin importer A 99.7 5.4E-17 1.2E-21 138.1 7.6 175 33-209 5-212 (272)
196 cd03244 ABCC_MRP_domain2 Domai 99.7 1.6E-16 3.4E-21 130.6 10.1 161 32-208 5-194 (221)
197 PRK14274 phosphate ABC transpo 99.7 5.5E-17 1.2E-21 136.7 7.4 173 31-209 14-211 (259)
198 PRK13645 cbiO cobalt transport 99.7 8.9E-17 1.9E-21 137.6 8.8 171 30-209 7-208 (289)
199 PRK11176 lipid transporter ATP 99.7 1.1E-16 2.3E-21 148.9 9.9 167 29-208 341-535 (582)
200 cd03299 ABC_ModC_like Archeal 99.7 5E-17 1.1E-21 135.1 6.9 148 49-209 17-187 (235)
201 PRK14235 phosphate transporter 99.7 4.4E-17 9.6E-22 138.0 6.6 174 30-209 20-219 (267)
202 PRK14253 phosphate ABC transpo 99.7 8.2E-17 1.8E-21 134.7 8.0 172 32-209 6-201 (249)
203 cd03267 ABC_NatA_like Similar 99.7 8.7E-17 1.9E-21 133.8 8.0 153 50-209 40-211 (236)
204 PRK14268 phosphate ABC transpo 99.7 9E-17 2E-21 135.4 8.0 174 30-209 13-210 (258)
205 PRK10261 glutathione transport 99.7 7.5E-17 1.6E-21 151.4 8.3 152 50-209 343-521 (623)
206 cd03245 ABCC_bacteriocin_expor 99.7 2.7E-16 5.8E-21 129.1 10.5 145 50-208 23-195 (220)
207 cd03230 ABC_DR_subfamily_A Thi 99.7 6.7E-17 1.4E-21 128.4 6.7 126 50-209 19-152 (173)
208 TIGR03269 met_CoM_red_A2 methy 99.7 8.9E-17 1.9E-21 147.8 8.5 173 33-209 4-226 (520)
209 PRK14249 phosphate ABC transpo 99.7 1E-16 2.2E-21 134.4 8.1 172 32-209 7-203 (251)
210 cd03252 ABCC_Hemolysin The ABC 99.7 2.2E-16 4.7E-21 131.2 10.0 150 49-209 20-194 (237)
211 PRK14239 phosphate transporter 99.7 6.7E-17 1.4E-21 135.4 6.9 172 32-209 8-204 (252)
212 PRK14259 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 135.9 8.1 172 31-209 15-210 (269)
213 PRK14270 phosphate ABC transpo 99.7 9.3E-17 2E-21 134.6 7.6 171 32-208 7-202 (251)
214 COG1129 MglA ABC-type sugar tr 99.7 5.1E-16 1.1E-20 140.4 12.8 167 32-209 11-202 (500)
215 cd03254 ABCC_Glucan_exporter_l 99.7 3.6E-16 7.7E-21 129.1 10.8 161 31-208 4-194 (229)
216 PRK14245 phosphate ABC transpo 99.7 6E-17 1.3E-21 135.7 6.3 172 32-209 6-202 (250)
217 PRK14248 phosphate ABC transpo 99.7 1.4E-16 2.9E-21 135.0 8.0 174 30-209 22-220 (268)
218 COG4172 ABC-type uncharacteriz 99.7 4.1E-17 8.9E-22 142.8 4.9 154 33-189 10-186 (534)
219 PRK11160 cysteine/glutathione 99.7 2.3E-16 4.9E-21 146.8 10.1 167 29-209 338-531 (574)
220 PRK09544 znuC high-affinity zi 99.7 2.8E-16 6.2E-21 132.1 9.7 152 32-209 7-178 (251)
221 PRK14251 phosphate ABC transpo 99.7 1.5E-16 3.3E-21 133.2 8.0 173 31-209 6-203 (251)
222 TIGR02770 nickel_nikD nickel i 99.7 1.9E-16 4.2E-21 131.1 8.4 156 50-209 5-183 (230)
223 TIGR02323 CP_lyasePhnK phospho 99.7 2.4E-16 5.3E-21 132.2 9.1 174 32-209 6-206 (253)
224 KOG0058|consensus 99.7 1.2E-16 2.7E-21 147.9 7.7 164 28-209 464-660 (716)
225 PLN03211 ABC transporter G-25; 99.7 1.4E-16 3E-21 150.3 8.0 162 38-208 77-262 (659)
226 TIGR02857 CydD thiol reductant 99.7 3.9E-16 8.4E-21 143.7 10.5 163 29-209 320-514 (529)
227 cd03251 ABCC_MsbA MsbA is an e 99.7 2.3E-16 5E-21 130.7 8.1 148 50-208 21-193 (234)
228 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 4.3E-16 9.4E-21 129.4 9.8 146 50-209 22-195 (238)
229 PRK14272 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 133.9 6.4 172 32-208 7-203 (252)
230 PRK13541 cytochrome c biogenes 99.7 2.1E-16 4.5E-21 127.8 7.6 145 50-209 19-180 (195)
231 PRK15134 microcin C ABC transp 99.7 2.2E-16 4.7E-21 145.6 8.7 170 30-209 276-483 (529)
232 cd03289 ABCC_CFTR2 The CFTR su 99.7 4.1E-16 8.8E-21 132.9 9.7 162 30-209 3-194 (275)
233 PRK10938 putative molybdenum t 99.7 2.6E-16 5.6E-21 143.7 9.0 161 32-209 6-192 (490)
234 cd03248 ABCC_TAP TAP, the Tran 99.7 5.2E-16 1.1E-20 128.0 10.0 172 30-208 12-205 (226)
235 TIGR03375 type_I_sec_LssB type 99.7 5.1E-16 1.1E-20 147.3 11.3 163 29-209 463-657 (694)
236 PRK14238 phosphate transporter 99.7 2.5E-16 5.5E-21 133.7 8.3 173 31-209 26-223 (271)
237 COG1132 MdlB ABC-type multidru 99.7 2.1E-16 4.7E-21 146.6 8.5 161 29-209 328-521 (567)
238 cd03246 ABCC_Protease_Secretio 99.7 2.8E-16 6E-21 124.9 7.9 120 50-209 21-153 (173)
239 PRK03695 vitamin B12-transport 99.7 2.2E-16 4.8E-21 132.4 7.6 152 49-209 14-190 (248)
240 cd03290 ABCC_SUR1_N The SUR do 99.7 5.4E-16 1.2E-20 127.3 9.8 145 50-209 20-199 (218)
241 PRK14275 phosphate ABC transpo 99.7 2.3E-16 4.9E-21 135.0 7.8 174 30-209 40-238 (286)
242 PRK14260 phosphate ABC transpo 99.7 1.6E-16 3.5E-21 133.9 6.8 174 31-209 9-206 (259)
243 TIGR01193 bacteriocin_ABC ABC- 99.7 4.4E-16 9.5E-21 148.0 10.4 166 29-208 473-665 (708)
244 PRK14244 phosphate ABC transpo 99.7 4.1E-16 8.8E-21 130.7 9.0 172 32-209 8-205 (251)
245 cd03247 ABCC_cytochrome_bd The 99.7 4.8E-16 1E-20 123.9 8.8 127 50-209 21-154 (178)
246 CHL00131 ycf16 sulfate ABC tra 99.6 2E-16 4.3E-21 132.5 6.8 172 32-209 10-208 (252)
247 COG4136 ABC-type uncharacteriz 99.6 1.4E-16 3E-21 123.3 5.1 131 50-189 21-163 (213)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 2.7E-16 5.9E-21 129.9 7.2 175 15-209 5-199 (224)
249 TIGR00958 3a01208 Conjugate Tr 99.6 5.6E-16 1.2E-20 147.5 10.3 167 29-209 478-671 (711)
250 PRK09580 sufC cysteine desulfu 99.6 4.9E-16 1.1E-20 129.8 8.7 171 33-209 5-202 (248)
251 PRK14266 phosphate ABC transpo 99.6 3.6E-16 7.7E-21 130.9 7.9 172 32-209 6-202 (250)
252 PRK10418 nikD nickel transport 99.6 3.6E-16 7.7E-21 131.4 7.9 169 32-209 7-198 (254)
253 PRK14236 phosphate transporter 99.6 5.8E-16 1.2E-20 131.5 8.9 174 30-209 26-224 (272)
254 PRK11174 cysteine/glutathione 99.6 5.9E-16 1.3E-20 144.2 9.6 164 29-209 349-541 (588)
255 PRK13549 xylose transporter AT 99.6 9.7E-16 2.1E-20 140.6 10.7 173 30-209 260-462 (506)
256 cd03233 ABC_PDR_domain1 The pl 99.6 2.3E-16 5.1E-21 128.4 5.9 152 32-208 6-175 (202)
257 TIGR01257 rim_protein retinal- 99.6 2.7E-16 5.8E-21 161.2 7.4 169 32-209 1940-2127(2272)
258 cd03229 ABC_Class3 This class 99.6 3.3E-16 7.2E-21 125.0 6.5 128 50-209 19-158 (178)
259 TIGR02203 MsbA_lipidA lipid A 99.6 1.3E-15 2.8E-20 141.2 11.2 163 29-208 330-524 (571)
260 COG4559 ABC-type hemin transpo 99.6 1.3E-15 2.8E-20 123.6 9.7 129 33-175 5-143 (259)
261 PRK14255 phosphate ABC transpo 99.6 3.5E-16 7.6E-21 131.1 6.7 171 32-208 8-203 (252)
262 cd03253 ABCC_ATM1_transporter 99.6 9.8E-16 2.1E-20 127.1 9.2 145 50-209 20-193 (236)
263 PRK14265 phosphate ABC transpo 99.6 6.1E-16 1.3E-20 131.6 8.1 171 32-209 23-217 (274)
264 TIGR03269 met_CoM_red_A2 methy 99.6 5.5E-16 1.2E-20 142.6 8.4 170 30-209 280-485 (520)
265 TIGR02633 xylG D-xylose ABC tr 99.6 1.1E-15 2.3E-20 140.0 10.2 172 31-209 259-460 (500)
266 cd03236 ABC_RNaseL_inhibitor_d 99.6 3E-15 6.4E-20 126.3 12.0 148 54-209 23-196 (255)
267 PRK14257 phosphate ABC transpo 99.6 7.1E-16 1.5E-20 134.5 8.3 176 30-209 81-281 (329)
268 PRK14252 phosphate ABC transpo 99.6 1E-15 2.2E-20 129.5 8.7 174 30-209 17-217 (265)
269 TIGR01257 rim_protein retinal- 99.6 3.8E-16 8.3E-21 160.1 7.2 171 29-209 928-1117(2272)
270 KOG0061|consensus 99.6 3.9E-16 8.5E-21 146.0 6.7 174 29-207 25-225 (613)
271 COG1137 YhbG ABC-type (unclass 99.6 6.5E-17 1.4E-21 130.1 1.2 165 33-209 8-196 (243)
272 PRK10790 putative multidrug tr 99.6 9.7E-16 2.1E-20 142.9 9.2 164 29-208 340-531 (592)
273 cd03217 ABC_FeS_Assembly ABC-t 99.6 8E-16 1.7E-20 125.0 7.5 126 50-209 19-161 (200)
274 PRK15064 ABC transporter ATP-b 99.6 5.7E-16 1.2E-20 142.8 7.5 159 33-209 5-209 (530)
275 cd03214 ABC_Iron-Siderophores_ 99.6 5.3E-16 1.2E-20 124.0 6.1 115 50-209 18-155 (180)
276 PRK14254 phosphate ABC transpo 99.6 6.5E-16 1.4E-20 132.2 7.0 171 31-208 41-235 (285)
277 cd03288 ABCC_SUR2 The SUR doma 99.6 2.5E-15 5.5E-20 126.5 10.3 166 29-209 19-212 (257)
278 PRK09700 D-allose transporter 99.6 1E-15 2.2E-20 140.5 8.5 151 50-209 282-466 (510)
279 PRK10789 putative multidrug tr 99.6 1.6E-15 3.4E-20 141.0 9.9 167 29-209 313-507 (569)
280 COG0396 sufC Cysteine desulfur 99.6 1.4E-15 3E-20 124.6 8.3 171 32-209 6-201 (251)
281 TIGR01842 type_I_sec_PrtD type 99.6 1.1E-15 2.3E-20 141.4 8.6 167 29-209 316-511 (544)
282 PRK14243 phosphate transporter 99.6 8.9E-16 1.9E-20 129.8 7.5 171 32-209 13-207 (264)
283 PF00005 ABC_tran: ABC transpo 99.6 5.1E-16 1.1E-20 118.0 5.4 115 50-188 4-136 (137)
284 PRK11288 araG L-arabinose tran 99.6 1.1E-15 2.4E-20 140.0 8.5 151 50-209 272-453 (501)
285 cd03250 ABCC_MRP_domain1 Domai 99.6 4.7E-15 1E-19 120.5 11.1 134 49-209 23-185 (204)
286 PRK13657 cyclic beta-1,2-gluca 99.6 2.5E-15 5.4E-20 140.1 10.6 161 29-208 334-526 (588)
287 TIGR02204 MsbA_rel ABC transpo 99.6 2.5E-15 5.4E-20 139.5 10.4 162 29-208 337-531 (576)
288 cd03213 ABCG_EPDR ABCG transpo 99.6 5.4E-16 1.2E-20 125.5 5.2 124 50-209 28-168 (194)
289 PRK10535 macrolide transporter 99.6 1.6E-15 3.4E-20 143.1 9.1 154 49-209 26-201 (648)
290 COG4619 ABC-type uncharacteriz 99.6 8.4E-16 1.8E-20 120.8 5.9 126 50-189 22-162 (223)
291 TIGR01194 cyc_pep_trnsptr cycl 99.6 1.6E-15 3.5E-20 140.6 8.9 160 29-209 337-528 (555)
292 cd03237 ABC_RNaseL_inhibitor_d 99.6 2.1E-15 4.5E-20 126.6 8.6 133 52-209 20-173 (246)
293 cd03228 ABCC_MRP_Like The MRP 99.6 2.6E-15 5.6E-20 119.1 8.7 123 50-209 21-152 (171)
294 cd03232 ABC_PDR_domain2 The pl 99.6 7.9E-16 1.7E-20 124.3 5.8 126 49-209 25-165 (192)
295 PRK10938 putative molybdenum t 99.6 5.3E-15 1.2E-19 135.1 11.8 173 30-209 261-459 (490)
296 COG4604 CeuD ABC-type enteroch 99.6 1.7E-15 3.7E-20 121.8 7.4 145 32-189 4-163 (252)
297 TIGR00956 3a01205 Pleiotropic 99.6 8.4E-16 1.8E-20 154.9 6.9 171 32-208 762-958 (1394)
298 PRK10762 D-ribose transporter 99.6 2.4E-15 5.1E-20 137.9 9.3 151 50-209 271-452 (501)
299 TIGR01846 type_I_sec_HlyB type 99.6 2.8E-15 6.1E-20 142.3 9.9 167 29-209 455-649 (694)
300 PRK14263 phosphate ABC transpo 99.6 1.8E-15 4E-20 127.8 7.5 167 36-209 15-205 (261)
301 PRK11819 putative ABC transpor 99.6 1.4E-15 3.1E-20 141.0 7.4 162 30-209 7-217 (556)
302 PTZ00265 multidrug resistance 99.6 3.4E-15 7.3E-20 151.0 10.5 173 29-209 1165-1416(1466)
303 TIGR00954 3a01203 Peroxysomal 99.6 3.4E-15 7.5E-20 141.0 9.7 160 30-209 452-636 (659)
304 PRK10522 multidrug transporter 99.6 4E-15 8.6E-20 137.7 9.8 158 29-209 322-507 (547)
305 PLN03232 ABC transporter C fam 99.6 2.3E-15 5E-20 152.8 8.9 166 29-209 1234-1427(1495)
306 COG4988 CydD ABC-type transpor 99.6 7.2E-15 1.6E-19 133.7 11.1 158 33-209 324-512 (559)
307 PLN03130 ABC transporter C fam 99.6 2.6E-15 5.6E-20 153.1 9.2 161 29-208 1237-1429(1622)
308 cd03369 ABCC_NFT1 Domain 2 of 99.6 8.2E-15 1.8E-19 119.4 10.0 158 30-209 7-181 (207)
309 cd03216 ABC_Carb_Monos_I This 99.6 4E-15 8.8E-20 117.3 7.9 123 33-209 4-139 (163)
310 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3.3E-15 7.1E-20 138.5 8.1 160 32-209 7-215 (552)
311 KOG0055|consensus 99.6 7.6E-15 1.7E-19 142.9 10.8 159 29-208 350-544 (1228)
312 TIGR00955 3a01204 The Eye Pigm 99.6 3.2E-15 6.9E-20 140.3 7.8 155 49-208 43-222 (617)
313 COG4148 ModC ABC-type molybdat 99.6 1.7E-15 3.7E-20 127.3 5.3 139 50-201 17-177 (352)
314 TIGR00957 MRP_assoc_pro multi 99.6 4.6E-15 1E-19 150.8 9.3 162 29-209 1284-1477(1522)
315 PRK14264 phosphate ABC transpo 99.6 4.2E-15 9E-20 128.4 7.8 174 30-208 46-255 (305)
316 COG4987 CydC ABC-type transpor 99.6 1.6E-14 3.5E-19 130.3 11.7 162 29-208 336-529 (573)
317 cd03223 ABCD_peroxisomal_ALDP 99.6 6.2E-15 1.4E-19 116.5 7.9 114 50-209 20-145 (166)
318 PLN03140 ABC transporter G fam 99.6 3.5E-15 7.6E-20 150.6 8.1 175 29-209 867-1076(1470)
319 PRK13409 putative ATPase RIL; 99.6 3E-14 6.5E-19 133.0 13.3 162 33-209 77-268 (590)
320 PTZ00243 ABC transporter; Prov 99.6 5.8E-15 1.3E-19 150.2 9.1 162 29-209 1308-1502(1560)
321 PRK15439 autoinducer 2 ABC tra 99.6 4.3E-15 9.4E-20 136.5 7.4 150 50-209 282-460 (510)
322 cd03215 ABC_Carb_Monos_II This 99.6 4.3E-15 9.4E-20 118.9 6.1 127 50-209 19-161 (182)
323 PTZ00265 multidrug resistance 99.6 7E-15 1.5E-19 148.7 8.8 174 29-209 382-637 (1466)
324 PRK15064 ABC transporter ATP-b 99.6 7.8E-15 1.7E-19 135.3 7.7 155 30-208 320-491 (530)
325 KOG0056|consensus 99.5 7.1E-15 1.5E-19 131.5 6.8 168 29-208 537-729 (790)
326 TIGR01271 CFTR_protein cystic 99.5 1.6E-14 3.4E-19 146.6 10.2 161 29-208 1217-1408(1490)
327 COG1119 ModF ABC-type molybden 99.5 8.2E-15 1.8E-19 121.1 6.5 162 30-202 32-218 (257)
328 TIGR01187 potA spermidine/putr 99.5 7.8E-15 1.7E-19 127.8 6.3 135 62-209 1-158 (325)
329 KOG0057|consensus 99.5 3.1E-14 6.8E-19 128.6 10.0 160 29-208 351-542 (591)
330 PRK10982 galactose/methyl gala 99.5 2.1E-14 4.5E-19 131.3 8.7 151 50-209 267-448 (491)
331 PRK13545 tagH teichoic acids e 99.5 5.1E-14 1.1E-18 128.7 10.7 159 32-209 24-200 (549)
332 TIGR01192 chvA glucan exporter 99.5 2.1E-14 4.6E-19 134.0 8.4 164 29-208 334-526 (585)
333 cd03238 ABC_UvrA The excision 99.5 3.4E-14 7.4E-19 113.6 8.5 30 50-79 14-43 (176)
334 COG4107 PhnK ABC-type phosphon 99.5 1.3E-14 2.9E-19 114.8 5.9 154 33-189 10-180 (258)
335 COG4674 Uncharacterized ABC-ty 99.5 1.3E-14 2.8E-19 116.6 5.3 168 31-210 7-204 (249)
336 PRK11819 putative ABC transpor 99.5 2.4E-14 5.2E-19 132.9 7.8 158 30-208 325-498 (556)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.7E-14 5.7E-19 132.4 8.0 158 30-208 323-496 (552)
338 cd03222 ABC_RNaseL_inhibitor T 99.5 6.1E-14 1.3E-18 112.3 8.9 101 52-209 20-129 (177)
339 PRK13409 putative ATPase RIL; 99.5 3E-14 6.6E-19 132.9 7.9 136 50-209 358-511 (590)
340 PRK11147 ABC transporter ATPas 99.5 3.9E-14 8.4E-19 133.4 8.2 157 31-208 321-493 (635)
341 COG1134 TagH ABC-type polysacc 99.5 9E-14 2E-18 114.9 9.2 146 43-208 41-203 (249)
342 COG4608 AppF ABC-type oligopep 99.5 3.3E-14 7.1E-19 119.3 6.7 97 50-189 32-138 (268)
343 PRK13546 teichoic acids export 99.5 4.7E-14 1E-18 119.5 7.7 138 50-209 43-200 (264)
344 PRK10636 putative ABC transpor 99.5 6.5E-14 1.4E-18 131.9 9.3 155 30-209 313-484 (638)
345 PRK10636 putative ABC transpor 99.5 3.9E-14 8.5E-19 133.4 7.3 170 32-209 4-203 (638)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 1.1E-13 2.4E-18 107.0 8.2 101 50-209 19-124 (144)
347 KOG0055|consensus 99.5 5.2E-14 1.1E-18 137.1 6.7 161 29-208 987-1181(1228)
348 TIGR00956 3a01205 Pleiotropic 99.5 7.9E-14 1.7E-18 140.8 6.7 157 50-208 80-266 (1394)
349 PRK15177 Vi polysaccharide exp 99.5 1.9E-13 4.2E-18 112.2 7.8 33 50-82 6-38 (213)
350 PLN03073 ABC transporter F fam 99.4 1.4E-13 3.1E-18 130.9 7.6 174 29-209 177-398 (718)
351 COG4618 ArpD ABC-type protease 99.4 2.1E-13 4.6E-18 122.4 7.1 159 33-209 338-529 (580)
352 cd03291 ABCC_CFTR1 The CFTR su 99.4 7.3E-13 1.6E-17 113.3 10.0 149 30-209 40-216 (282)
353 PLN03073 ABC transporter F fam 99.4 2E-13 4.3E-18 129.9 6.8 154 30-208 509-680 (718)
354 PLN03232 ABC transporter C fam 99.4 7.2E-13 1.6E-17 134.8 11.1 155 29-209 614-797 (1495)
355 COG0488 Uup ATPase components 99.4 3.3E-13 7.1E-18 124.1 7.4 158 32-208 6-206 (530)
356 COG4615 PvdE ABC-type sideroph 99.4 6.7E-13 1.5E-17 116.4 8.2 159 27-209 320-506 (546)
357 PRK11147 ABC transporter ATPas 99.4 3.1E-13 6.7E-18 127.3 6.6 169 32-209 6-210 (635)
358 COG4586 ABC-type uncharacteriz 99.4 4.8E-13 1E-17 112.3 6.8 166 14-189 7-185 (325)
359 PLN03130 ABC transporter C fam 99.4 1.5E-12 3.4E-17 133.0 10.4 155 29-209 614-797 (1622)
360 PHA03132 thymidine kinase; Pro 99.4 2.9E-12 6.3E-17 118.2 10.6 143 56-204 256-425 (580)
361 PF01712 dNK: Deoxynucleoside 99.4 1.9E-12 4E-17 100.5 8.0 88 116-205 1-92 (146)
362 cd03278 ABC_SMC_barmotin Barmo 99.4 8.4E-13 1.8E-17 107.3 6.0 135 50-209 16-173 (197)
363 cd00267 ABC_ATPase ABC (ATP-bi 99.4 2.9E-12 6.4E-17 99.9 8.9 33 50-82 18-50 (157)
364 PLN03140 ABC transporter G fam 99.4 5.7E-13 1.2E-17 134.8 5.9 154 50-208 184-393 (1470)
365 COG1101 PhnK ABC-type uncharac 99.3 6.7E-13 1.5E-17 108.1 4.2 138 50-197 25-187 (263)
366 KOG0065|consensus 99.3 1.2E-12 2.6E-17 128.1 6.5 152 50-207 810-985 (1391)
367 TIGR00957 MRP_assoc_pro multi 99.3 1.7E-12 3.6E-17 132.3 7.6 154 29-209 636-819 (1522)
368 KOG3877|consensus 99.3 7.5E-12 1.6E-16 105.2 10.1 147 55-204 69-241 (393)
369 COG5265 ATM1 ABC-type transpor 99.3 7.8E-12 1.7E-16 110.3 9.3 165 34-209 265-455 (497)
370 COG4778 PhnL ABC-type phosphon 99.3 4.3E-12 9.3E-17 100.2 6.6 138 49-189 29-181 (235)
371 PHA03138 thymidine kinase; Pro 99.3 8.5E-12 1.8E-16 108.0 8.6 144 59-205 14-192 (340)
372 COG4133 CcmA ABC-type transpor 99.3 2.1E-12 4.7E-17 103.1 4.4 125 50-189 21-159 (209)
373 KOG0059|consensus 99.3 4.3E-12 9.4E-17 123.5 6.6 148 50-207 584-753 (885)
374 KOG0054|consensus 99.2 2E-11 4.4E-16 121.3 8.6 162 28-208 1137-1330(1381)
375 COG0488 Uup ATPase components 99.2 3.3E-11 7.2E-16 110.9 8.8 135 31-189 323-468 (530)
376 PTZ00243 ABC transporter; Prov 99.2 2.2E-11 4.9E-16 124.3 8.5 139 50-209 679-839 (1560)
377 TIGR01271 CFTR_protein cystic 99.2 2.5E-11 5.4E-16 123.6 8.8 134 49-209 444-605 (1490)
378 PRK13975 thymidylate kinase; P 99.2 4.2E-11 9.1E-16 96.4 8.0 135 57-206 2-139 (196)
379 PHA03136 thymidine kinase; Pro 99.2 5.8E-11 1.2E-15 104.2 8.9 145 58-205 37-216 (378)
380 cd03270 ABC_UvrA_I The excisio 99.2 1E-11 2.2E-16 102.8 3.6 59 151-209 118-196 (226)
381 cd03271 ABC_UvrA_II The excisi 99.2 5E-11 1.1E-15 100.9 7.5 61 149-209 148-229 (261)
382 COG4178 ABC-type uncharacteriz 99.1 1.6E-10 3.5E-15 106.8 9.2 150 29-201 392-560 (604)
383 cd03283 ABC_MutS-like MutS-lik 99.1 9.4E-11 2E-15 95.4 5.6 117 52-209 20-145 (199)
384 KOG0054|consensus 99.1 4.7E-10 1E-14 111.8 10.6 149 30-208 519-699 (1381)
385 PRK00698 tmk thymidylate kinas 99.1 3.2E-10 7E-15 91.6 7.7 25 177-203 126-150 (205)
386 cd03273 ABC_SMC2_euk Eukaryoti 99.1 1.8E-10 4E-15 96.6 5.9 147 57-209 25-226 (251)
387 PRK10078 ribose 1,5-bisphospho 99.1 5.4E-10 1.2E-14 89.7 8.4 128 57-204 2-134 (186)
388 KOG0060|consensus 99.1 6.1E-10 1.3E-14 101.7 9.4 172 10-200 418-614 (659)
389 cd03279 ABC_sbcCD SbcCD and ot 99.0 8.7E-10 1.9E-14 90.4 8.0 26 55-80 26-51 (213)
390 cd01672 TMPK Thymidine monopho 99.0 5E-10 1.1E-14 89.5 6.3 27 176-204 123-149 (200)
391 COG4170 SapD ABC-type antimicr 99.0 1.1E-09 2.3E-14 89.6 6.7 154 50-207 26-213 (330)
392 TIGR00235 udk uridine kinase. 99.0 9.9E-10 2.1E-14 89.6 6.6 29 54-82 3-31 (207)
393 COG4138 BtuD ABC-type cobalami 99.0 2.1E-09 4.6E-14 85.5 7.9 143 47-208 15-188 (248)
394 PRK09825 idnK D-gluconate kina 99.0 1.8E-09 4E-14 86.2 7.2 28 56-83 2-29 (176)
395 PRK07933 thymidylate kinase; V 99.0 1.1E-09 2.3E-14 90.2 5.8 27 176-204 130-156 (213)
396 cd00820 PEPCK_HprK Phosphoenol 99.0 8.6E-10 1.9E-14 81.1 4.6 41 50-91 8-48 (107)
397 COG0125 Tmk Thymidylate kinase 98.9 2.4E-09 5.3E-14 87.7 7.6 130 56-204 2-151 (208)
398 PRK13973 thymidylate kinase; P 98.9 3.3E-09 7.2E-14 87.1 8.3 26 56-81 2-27 (213)
399 KOG0927|consensus 98.9 3E-09 6.4E-14 96.6 8.2 154 10-189 360-538 (614)
400 TIGR02322 phosphon_PhnN phosph 98.9 9.2E-09 2E-13 81.7 9.0 25 57-81 1-25 (179)
401 TIGR01360 aden_kin_iso1 adenyl 98.9 2.3E-09 5E-14 85.3 4.6 27 175-203 103-129 (188)
402 KOG0927|consensus 98.9 2.2E-09 4.8E-14 97.4 4.6 65 10-81 61-125 (614)
403 TIGR00041 DTMP_kinase thymidyl 98.8 7.6E-09 1.6E-13 83.1 6.8 25 57-81 3-27 (195)
404 PRK08118 topology modulation p 98.8 8.4E-09 1.8E-13 81.7 6.8 27 175-203 75-101 (167)
405 TIGR03263 guanyl_kin guanylate 98.8 4.8E-08 1E-12 77.5 10.7 26 57-82 1-26 (180)
406 cd03240 ABC_Rad50 The catalyti 98.8 1.1E-08 2.5E-13 83.4 7.1 23 55-78 21-43 (204)
407 KOG0066|consensus 98.8 1.7E-08 3.8E-13 90.1 8.1 153 32-208 589-757 (807)
408 KOG0062|consensus 98.8 4.5E-09 9.7E-14 94.9 4.3 46 32-79 83-128 (582)
409 PRK13974 thymidylate kinase; P 98.8 6.4E-09 1.4E-13 85.3 4.9 26 56-81 2-27 (212)
410 PRK00300 gmk guanylate kinase; 98.8 4.3E-08 9.2E-13 79.4 9.7 29 54-82 2-30 (205)
411 COG1245 Predicted ATPase, RNas 98.8 3.4E-08 7.4E-13 88.4 9.7 150 53-210 96-271 (591)
412 PRK05480 uridine/cytidine kina 98.8 7.2E-09 1.6E-13 84.5 4.9 28 54-81 3-30 (209)
413 cd03274 ABC_SMC4_euk Eukaryoti 98.8 6.2E-10 1.3E-14 91.5 -2.3 22 58-79 26-47 (212)
414 PRK13976 thymidylate kinase; P 98.7 1.1E-08 2.3E-13 84.0 5.0 23 59-81 2-24 (209)
415 PLN02924 thymidylate kinase 98.7 9.4E-08 2E-12 79.1 10.4 27 55-81 14-40 (220)
416 PRK06217 hypothetical protein; 98.7 6.9E-08 1.5E-12 77.3 9.3 26 175-202 80-105 (183)
417 PRK06762 hypothetical protein; 98.7 1.4E-07 2.9E-12 74.0 10.4 28 175-204 92-119 (166)
418 TIGR01359 UMP_CMP_kin_fam UMP- 98.7 9.8E-08 2.1E-12 75.9 9.6 25 177-203 102-126 (183)
419 KOG0064|consensus 98.7 1.9E-08 4.2E-13 91.3 5.8 134 50-202 501-658 (728)
420 PRK14527 adenylate kinase; Pro 98.7 1.7E-07 3.7E-12 75.4 10.7 28 55-82 4-31 (191)
421 PHA03135 thymidine kinase; Pro 98.7 1.9E-08 4.1E-13 87.4 5.4 144 59-205 12-184 (343)
422 cd03243 ABC_MutS_homologs The 98.7 2.2E-08 4.8E-13 81.3 5.2 33 48-80 20-52 (202)
423 PRK07261 topology modulation p 98.7 8.3E-08 1.8E-12 76.2 8.3 25 59-83 2-26 (171)
424 PRK02496 adk adenylate kinase; 98.7 1.7E-07 3.7E-12 74.8 10.1 26 177-204 106-131 (184)
425 COG1102 Cmk Cytidylate kinase 98.7 6.6E-08 1.4E-12 75.7 7.3 111 59-202 2-112 (179)
426 TIGR03238 dnd_assoc_3 dnd syst 98.7 5E-09 1.1E-13 94.8 0.3 26 50-75 25-50 (504)
427 PRK08233 hypothetical protein; 98.6 6.3E-08 1.4E-12 76.6 6.6 26 57-82 3-28 (182)
428 cd03280 ABC_MutS2 MutS2 homolo 98.6 2.2E-07 4.8E-12 75.4 9.4 32 47-78 17-49 (200)
429 PRK14731 coaE dephospho-CoA ki 98.6 5.2E-08 1.1E-12 79.7 5.5 26 177-204 132-157 (208)
430 PRK13949 shikimate kinase; Pro 98.6 9.5E-08 2.1E-12 75.8 6.6 27 59-85 3-29 (169)
431 PRK14531 adenylate kinase; Pro 98.6 3.6E-07 7.7E-12 73.2 9.9 26 177-204 106-131 (183)
432 cd03275 ABC_SMC1_euk Eukaryoti 98.6 5E-08 1.1E-12 81.7 5.0 24 59-82 24-47 (247)
433 PRK14532 adenylate kinase; Pro 98.6 4.3E-07 9.2E-12 72.7 9.9 24 177-202 105-128 (188)
434 PRK14738 gmk guanylate kinase; 98.6 8.5E-07 1.8E-11 72.5 11.5 28 54-81 10-37 (206)
435 cd03276 ABC_SMC6_euk Eukaryoti 98.6 2.6E-07 5.7E-12 75.1 8.3 27 53-80 18-44 (198)
436 PHA03134 thymidine kinase; Pro 98.6 2E-07 4.3E-12 81.0 7.8 141 59-205 15-188 (340)
437 PF02223 Thymidylate_kin: Thym 98.6 8.7E-08 1.9E-12 76.6 5.0 24 178-203 118-141 (186)
438 PRK03846 adenylylsulfate kinas 98.5 2.4E-07 5.2E-12 75.1 7.4 28 54-81 21-48 (198)
439 PRK11545 gntK gluconate kinase 98.5 4.8E-07 1E-11 71.3 8.7 24 178-203 90-113 (163)
440 cd02023 UMPK Uridine monophosp 98.5 1.1E-07 2.5E-12 76.7 4.9 23 59-81 1-23 (198)
441 PLN02200 adenylate kinase fami 98.5 1.1E-06 2.3E-11 73.4 10.7 33 51-83 37-69 (234)
442 COG1245 Predicted ATPase, RNas 98.5 1.5E-07 3.2E-12 84.4 5.7 130 53-209 363-513 (591)
443 PRK05057 aroK shikimate kinase 98.5 4.7E-07 1E-11 72.0 7.9 27 58-84 5-31 (172)
444 PRK09270 nucleoside triphospha 98.5 9.1E-08 2E-12 79.3 3.7 28 55-82 31-58 (229)
445 PRK13808 adenylate kinase; Pro 98.5 7.7E-07 1.7E-11 77.7 9.3 25 59-83 2-26 (333)
446 PF13671 AAA_33: AAA domain; P 98.5 2.4E-07 5.3E-12 70.4 5.5 28 176-205 95-122 (143)
447 TIGR01313 therm_gnt_kin carboh 98.5 8.1E-07 1.7E-11 69.4 8.5 23 60-82 1-23 (163)
448 PRK14528 adenylate kinase; Pro 98.5 1.6E-06 3.5E-11 69.7 10.2 24 177-202 106-129 (186)
449 cd00227 CPT Chloramphenicol (C 98.5 1E-06 2.2E-11 69.9 8.9 26 56-81 1-26 (175)
450 PRK14530 adenylate kinase; Pro 98.4 1.8E-06 4E-11 70.7 10.3 25 59-83 5-29 (215)
451 TIGR00554 panK_bact pantothena 98.4 1.8E-07 4E-12 80.3 4.5 27 55-81 60-86 (290)
452 COG1129 MglA ABC-type sugar tr 98.4 8.6E-07 1.9E-11 80.9 8.3 150 49-209 277-458 (500)
453 PRK00349 uvrA excinuclease ABC 98.4 1.3E-06 2.8E-11 85.6 9.9 59 151-209 811-890 (943)
454 PRK00635 excinuclease ABC subu 98.4 8.3E-07 1.8E-11 91.2 8.8 58 152-209 791-869 (1809)
455 PRK05541 adenylylsulfate kinas 98.4 1.2E-06 2.5E-11 69.5 7.9 28 54-81 4-31 (176)
456 PRK14732 coaE dephospho-CoA ki 98.4 6.2E-07 1.3E-11 72.9 6.4 24 177-202 120-143 (196)
457 cd02025 PanK Pantothenate kina 98.4 1.5E-07 3.2E-12 77.9 2.8 23 59-81 1-23 (220)
458 cd03284 ABC_MutS1 MutS1 homolo 98.4 1.3E-06 2.8E-11 71.9 8.3 30 50-80 24-53 (216)
459 TIGR01351 adk adenylate kinase 98.4 2.3E-06 4.9E-11 69.9 9.6 23 178-202 103-125 (210)
460 PRK14529 adenylate kinase; Pro 98.4 3.7E-06 8.1E-11 69.7 10.2 25 59-83 2-26 (223)
461 cd01428 ADK Adenylate kinase ( 98.4 3.3E-06 7.1E-11 67.5 9.6 25 177-203 103-127 (194)
462 PRK13477 bifunctional pantoate 98.4 1.1E-06 2.4E-11 80.9 7.5 28 56-83 283-310 (512)
463 PRK03839 putative kinase; Prov 98.4 1.9E-06 4.1E-11 68.5 8.0 26 59-84 2-27 (180)
464 PRK00081 coaE dephospho-CoA ki 98.3 2.7E-06 5.8E-11 68.9 8.7 25 177-203 123-147 (194)
465 PRK14730 coaE dephospho-CoA ki 98.3 1.2E-06 2.5E-11 71.2 6.4 24 59-82 3-26 (195)
466 PF01583 APS_kinase: Adenylyls 98.3 1.3E-06 2.9E-11 68.4 6.1 46 150-197 66-116 (156)
467 COG0529 CysC Adenylylsulfate k 98.3 2.2E-06 4.7E-11 68.2 7.0 113 53-197 19-137 (197)
468 cd02026 PRK Phosphoribulokinas 98.3 6.3E-07 1.4E-11 76.4 3.9 24 59-82 1-24 (273)
469 cd00464 SK Shikimate kinase (S 98.3 1.8E-06 4E-11 66.3 6.1 25 60-84 2-26 (154)
470 TIGR02858 spore_III_AA stage I 98.3 3.3E-06 7.1E-11 71.9 8.1 25 58-82 112-136 (270)
471 cd02024 NRK1 Nicotinamide ribo 98.3 1.6E-06 3.6E-11 69.9 5.7 28 176-205 128-155 (187)
472 PRK00279 adk adenylate kinase; 98.3 1.1E-05 2.3E-10 66.1 10.5 25 59-83 2-26 (215)
473 PRK00131 aroK shikimate kinase 98.2 2.2E-06 4.8E-11 67.0 6.0 29 55-83 2-30 (175)
474 PTZ00301 uridine kinase; Provi 98.2 7.1E-07 1.5E-11 73.3 3.2 22 58-79 4-25 (210)
475 PRK14734 coaE dephospho-CoA ki 98.2 5.5E-06 1.2E-10 67.4 8.4 23 59-81 3-25 (200)
476 COG0703 AroK Shikimate kinase 98.2 2.7E-06 5.9E-11 67.5 6.3 27 59-85 4-30 (172)
477 PRK14737 gmk guanylate kinase; 98.2 1.2E-05 2.5E-10 64.8 10.0 27 55-81 2-28 (186)
478 cd01130 VirB11-like_ATPase Typ 98.2 6.4E-07 1.4E-11 71.9 2.6 33 50-82 18-50 (186)
479 PRK13948 shikimate kinase; Pro 98.2 4E-06 8.6E-11 67.4 7.1 31 55-85 8-38 (182)
480 COG0194 Gmk Guanylate kinase [ 98.2 1.2E-05 2.7E-10 64.4 9.7 27 56-82 3-29 (191)
481 cd02022 DPCK Dephospho-coenzym 98.2 3.4E-06 7.4E-11 67.3 6.4 24 177-202 120-143 (179)
482 TIGR00017 cmk cytidylate kinas 98.2 1.1E-06 2.5E-11 72.4 3.4 25 59-83 4-28 (217)
483 KOG3079|consensus 98.2 1.6E-05 3.6E-10 63.5 9.7 124 55-204 6-136 (195)
484 COG3709 Uncharacterized compon 98.2 2.4E-06 5.2E-11 67.1 4.8 25 56-80 4-28 (192)
485 PF13555 AAA_29: P-loop contai 98.2 1.7E-06 3.6E-11 57.4 3.3 25 56-80 22-46 (62)
486 COG1936 Predicted nucleotide k 98.2 4.5E-06 9.7E-11 66.1 6.2 27 175-203 79-105 (180)
487 PLN02674 adenylate kinase 98.2 1.8E-05 3.9E-10 66.4 10.3 27 57-83 31-57 (244)
488 PRK08356 hypothetical protein; 98.2 1.1E-05 2.3E-10 65.2 8.6 22 58-79 6-27 (195)
489 PF00693 Herpes_TK: Thymidine 98.1 6.7E-06 1.5E-10 69.9 7.1 137 64-205 1-170 (281)
490 cd03272 ABC_SMC3_euk Eukaryoti 98.1 1.8E-06 4E-11 71.7 3.6 24 57-80 23-46 (243)
491 cd02021 GntK Gluconate kinase 98.1 2.6E-05 5.7E-10 59.9 9.8 25 59-83 1-25 (150)
492 PRK07429 phosphoribulokinase; 98.1 3.8E-06 8.3E-11 73.4 5.6 28 55-82 6-33 (327)
493 PRK08154 anaerobic benzoate ca 98.1 1.1E-05 2.4E-10 69.9 8.2 34 52-85 128-161 (309)
494 PF00406 ADK: Adenylate kinase 98.1 7.8E-06 1.7E-10 63.2 6.5 24 175-200 99-122 (151)
495 PF13207 AAA_17: AAA domain; P 98.1 1.6E-06 3.5E-11 64.1 2.5 25 59-83 1-25 (121)
496 PRK01184 hypothetical protein; 98.1 4.1E-05 8.8E-10 61.0 10.7 31 172-204 97-127 (184)
497 PRK06002 fliI flagellum-specif 98.1 2.9E-06 6.3E-11 76.8 4.4 31 52-82 160-190 (450)
498 COG0572 Udk Uridine kinase [Nu 98.1 2.3E-06 4.9E-11 70.4 3.4 27 56-82 7-33 (218)
499 PRK06315 type III secretion sy 98.1 3.8E-06 8.3E-11 76.0 5.1 106 45-160 152-277 (442)
500 PRK05416 glmZ(sRNA)-inactivati 98.1 3.3E-05 7.2E-10 66.4 10.6 27 55-81 4-30 (288)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=7.8e-30 Score=206.35 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=135.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++.+|+.+..+++++++ +.+||+++|+||||||||||+|+|+++.. +.+.|+++... ...
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~--v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~---------~~~ 72 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLS--VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK---------KDI 72 (240)
T ss_pred EEEeeeEEeCCeEEecCccee--EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch---------hhH
Confidence 346667777777777777655 59999999999999999999999999853 44444433211 133
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~ 176 (210)
.+.++++|||||+++|||+++++.+....+..+.+.++.++++++.++|+++|+. ...++.++||+.++ ++
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 3455889999999999999999999988888889999999999999999999999 45556789999866 45
Q ss_pred cCccEEEEecCCC--CHHH------HHHhhhhcCceeEEe
Q psy6983 177 QKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~ 208 (210)
..|++++|+|+|. |||. .|+.+.+.|.+-+||
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivV 192 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIV 192 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 7999999999998 7775 577888999888876
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.2e-24 Score=178.39 Aligned_cols=158 Identities=14% Similarity=0.031 Sum_probs=115.5
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+..++++|+...+++++ |+++.+||+++|+||||||||||+|+|+|+.. +.+.|+++.+
T Consensus 6 i~~v~~~f~~~~vl~~i--~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-------------- 69 (248)
T COG1116 6 IEGVSKSFGGVEVLEDI--NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-------------- 69 (248)
T ss_pred EEeeEEEeCceEEeccc--eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC--------------
Confidence 34555556665555555 55569999999999999999999999999854 3344444321
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh-------cc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM-------VQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~-------~~ 177 (210)
-..+++|+||++.|+|-.++..|+..+ ....+.+..+.++++.++|+.+||. ..+.+.++||+|+++ +.
T Consensus 70 -p~~~~~~vFQ~~~LlPW~Tv~~NV~l~-l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 70 -PGPDIGYVFQEDALLPWLTVLDNVALG-LELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred -CCCCEEEEeccCcccchhhHHhhheeh-hhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 125789999999999999988887542 2233356667777899999999998 566678999999764 67
Q ss_pred CccEEEEecCCC--------CHHHHHHhhhhcCceeEE
Q psy6983 178 KTMLEVHLDQPI--------TPIKMMERSIHSARFVLV 207 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~ 207 (210)
.|++++.+||.. .-+..+.+|.++.++.+|
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 999988888765 334456677666655544
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=4e-24 Score=186.15 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=111.0
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++.+|+...++++++++ +++||+++|+||||||||||||+|||+.. |.+.|+++.+. +
T Consensus 6 l~i~~v~k~yg~~~av~~isl~--i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l---------p- 73 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLD--IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV---------P- 73 (352)
T ss_pred EEEEeeeeecCCeeEEecceee--ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC---------C-
Confidence 4566777778866677666555 59999999999999999999999999853 66666666542 1
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT------- 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~------- 174 (210)
...|.++||||+|.|||++++..++..+-. ... ....+.+.++.++|+.+++. ..+.++++|+++++
T Consensus 74 --p~kR~ig~VFQ~YALFPHltV~~NVafGLk-~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 74 --PEKRPIGMVFQSYALFPHMTVEENVAFGLK-VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred --hhhcccceeecCcccCCCCcHHHHhhhhhh-hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHH
Confidence 233789999999999999999888765433 222 23355667899999999998 66778899999866
Q ss_pred hccCccEEEEecCCC
Q psy6983 175 MVQKTMLEVHLDQPI 189 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~ 189 (210)
++..|++++++|+-.
T Consensus 151 L~~~P~vLLLDEPlS 165 (352)
T COG3842 151 LVPEPKVLLLDEPLS 165 (352)
T ss_pred hhcCcchhhhcCccc
Confidence 468999977776643
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.4e-23 Score=172.88 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=124.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+...+++++ |+++.+|++++|+||||||||||+|+++|+.. +.+.+.+..+.
T Consensus 5 i~v~nl~v~y~~~~vl~~i--~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~----------- 71 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDI--SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR----------- 71 (254)
T ss_pred EEEeeeEEEECCEeeeecc--EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-----------
Confidence 4567888888865455555 55569999999999999999999999999754 33333333210
Q ss_pred HHhcccceeeeehhhH-----hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh--hhhHHHHHHh---
Q psy6983 105 MYENASRWSLTFQTMV-----QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN--ASRWSLTFQT--- 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~-----l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~--~~~~s~~~~~--- 174 (210)
+.+.++|||+|... ..+..+.+.........++.+....+++.+.++|+++|+.++.+ ..++|+++++
T Consensus 72 --~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 72 --RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL 149 (254)
T ss_pred --ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH
Confidence 12357999999752 24566777776655556666666677889999999999995544 5689998644
Q ss_pred ----hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
++..||+++++||+. .....++++++.|++|++|.
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vt 196 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVT 196 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 578999999999987 55678999999999999985
No 5
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=169.72 Aligned_cols=172 Identities=13% Similarity=0.016 Sum_probs=120.7
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+...++++.|+...+++++++++ .+++++|++|||||||||++|++.++.+.. .+..+.|.+.++|.++.. +..
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lNRmndl~-~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLNRMNDLI-PGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eEecceeEEECchhhhccCceec--cCCceEEEECCCCcCHHHHHHHHHhhcccC-cCceEEEEEEECCeeccCCCCCHH
Confidence 44578888899888998887665 888899999999999999999999985521 233444555555555433 234
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h-----HHhhhhHHHHHHhh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M-----YENASRWSLTFQTM----- 175 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~-----~~~~~~~s~~~~~~----- 175 (210)
+.++++|||||.|+.|| +++..++.++...+.... .+..+++++.|....|| + ......+||+.|++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 55688999999998887 666666654433222223 55557899999999998 1 22334689998775
Q ss_pred --ccCccEEEEecCCC--C------HHHHHHhhhhcCceeEE
Q psy6983 176 --VQKTMLEVHLDQPI--T------PIKMMERSIHSARFVLV 207 (210)
Q Consensus 176 --~~~Pdl~I~Ld~~~--~------pe~~l~Ri~~R~r~~~~ 207 (210)
+-.|++++.+|++. | -|.++..++ ..-++++
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIvi 203 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVI 203 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEE
Confidence 45999999888876 3 466777776 3334443
No 6
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.2e-23 Score=169.16 Aligned_cols=137 Identities=16% Similarity=0.094 Sum_probs=100.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++||+++|+|+||||||||+|+|+|+.++ .+.+..+.... -...++.++++||+||.++|.++
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~-------~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLK-------GKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccc-------hHHHHHHHHhceeEeccCCcccc
Confidence 4556799999999999999999999999998653 33333322111 12233445889999999999887
Q ss_pred HHHHHcCCCCcc-------cccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 125 LEVHLDQPITPI-------KMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 125 ~~~~~~~~~~~~-------~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
++++.++..+.. .++.....+++..+.++|+++|+. .+...+++|++.++ +++.|++++-+||.
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 776666543222 233445567778899999999998 56777889998765 46899999988887
Q ss_pred C--CHHH
Q psy6983 189 I--TPIK 193 (210)
Q Consensus 189 ~--~pe~ 193 (210)
. ||+.
T Consensus 176 asLDp~~ 182 (258)
T COG3638 176 ASLDPES 182 (258)
T ss_pred cccChhh
Confidence 6 6654
No 7
>KOG4235|consensus
Probab=99.88 E-value=1.6e-22 Score=160.93 Aligned_cols=144 Identities=33% Similarity=0.488 Sum_probs=125.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--cceeeccccccccccCcc--hHHHHHhcccceeeeehhhHhhhHHHHHHcCCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD--ITAYAEPVNLWRDVKGHN--LLALMYENASRWSLTFQTMVQKTMLEVHLDQPIT 134 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~--i~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~ 134 (210)
++.|.|+.++||||.++.++.... ..+..||+..|.+++|.+ +|+.+|+++++++|.||.+..++++.....-..+
T Consensus 24 ~~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep~Rws~tfQtYv~ltrL~~~~~p~~~ 103 (244)
T KOG4235|consen 24 LSIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKWQNVQGANANLLDMMYREPARWSYTFQTYVFLTRLKVQLEPFNG 103 (244)
T ss_pred eEEEecccccchHHHHHHHHhccCccceecCchHHHHhccccccccHHHHHhhchHhheehhhHHHHHHHHHHHhcCCCC
Confidence 344999999999999997766532 346789999999999877 8999999999999999999988888876665544
Q ss_pred --cccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhc-cCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 135 --PIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 135 --~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~-~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
+..+++||..+|+.+|.+.|.+.|-+ +|..|++|+.++..-. -.+|.+|||++ +||+|.+||.+|+|.
T Consensus 104 ~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLra--sPetc~~Ri~~R~R~ 177 (244)
T KOG4235|consen 104 RKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRA--SPETCYKRIYLRARE 177 (244)
T ss_pred CCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEeec--ChHHHHHHHHHHhhh
Confidence 67889999999999999999999998 8999999999875433 58999999999 999999999999985
No 8
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=7.5e-23 Score=162.85 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=124.0
Q ss_pred CCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
|.+++..|.... ++.+ +||++++||++.|+||||||||||+|+|.+.. .+.+++.++..... .. .+
T Consensus 4 f~~V~k~Y~~g~~aL~~--vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~---~~-iP-- 75 (223)
T COG2884 4 FENVSKAYPGGREALRD--VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG---RE-IP-- 75 (223)
T ss_pred ehhhhhhcCCCchhhhC--ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc---cc-cc--
Confidence 444444444432 3333 45567999999999999999999999999864 35555555543211 11 11
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh-------c
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM-------V 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~-------~ 176 (210)
-.+++||+|||++.|++..++..++..+ ..+.+.+..+.+.++.++|+.+||. ....+.++|++.|++ +
T Consensus 76 -~LRR~IGvVFQD~rLL~~~tvyeNVA~p-L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 -FLRRQIGVVFQDFRLLPDRTVYENVALP-LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred -hhhheeeeEeeeccccccchHhhhhhhh-hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc
Confidence 2238899999999999988888887553 4555667788888999999999998 566678999987664 5
Q ss_pred cCccEEEEecCCC--CHHH------HHHhhhhcCceeEEe
Q psy6983 177 QKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~ 208 (210)
.+|++++-+|||- ||+. ++++++++|-+|+++
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A 193 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEE
Confidence 7999999999986 6664 568899999999886
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=9.5e-23 Score=167.48 Aligned_cols=163 Identities=13% Similarity=0.020 Sum_probs=123.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+..++.++++....++++ +++++||+++|+||||||||||+|++.|+.. +.+.|+++.+..+ ..
T Consensus 9 I~vr~v~~~fG~~~Ild~v~--l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~-------~~ 79 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVD--LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE-------EE 79 (263)
T ss_pred EEEeeeeeecCCEEEecCce--eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH-------HH
Confidence 44566777777766666654 5569999999999999999999999999853 5555655543221 34
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT------- 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~------- 174 (210)
.++.++++|++||.-+||+.+++..++..+...+.+.+....++.+...|+.+||- ....++++|++|+.
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 44566889999999999999999888866544555567777778888999999997 46667899999854
Q ss_pred hccCccEEEEecCCC--CH------HHHHHhhhhc
Q psy6983 175 MVQKTMLEVHLDQPI--TP------IKMMERSIHS 201 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R 201 (210)
++..|++++|+||++ || +.++.+++..
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 467999999999987 44 4455555544
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.88 E-value=5.2e-23 Score=178.32 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=108.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++.+|+...++++ +|+++++||+++|+||||||||||||+|||+.+ +.+.|+++++. +
T Consensus 4 i~l~~v~K~yg~~~~l~~--i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l---------~- 71 (338)
T COG3839 4 LELKNVRKSFGSFEVLKD--VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL---------P- 71 (338)
T ss_pred EEEeeeEEEcCCceeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC---------C-
Confidence 344555556665444444 456679999999999999999999999999854 55566665532 1
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
...|++|||||+|.|+|++++..+...+ ......++.+..+++.++.+.+++. ..+.+.++|++.++ +
T Consensus 72 --P~~R~iamVFQ~yALyPhmtV~~Niaf~-Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 72 --PEKRGIAMVFQNYALYPHMTVYENIAFG-LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred --hhHCCEEEEeCCccccCCCcHHHHhhhh-hhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH
Confidence 2227899999999999999988887542 3444556778788999999999998 44556789998865 4
Q ss_pred ccCccEEEEecCCC
Q psy6983 176 VQKTMLEVHLDQPI 189 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~ 189 (210)
+..|++.+++||-.
T Consensus 149 Vr~P~v~L~DEPlS 162 (338)
T COG3839 149 VRKPKVFLLDEPLS 162 (338)
T ss_pred hcCCCEEEecCchh
Confidence 67999877777754
No 11
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.88 E-value=5.4e-22 Score=160.37 Aligned_cols=140 Identities=17% Similarity=0.265 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCccc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIK 137 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~ 137 (210)
.+|+|.|+.|+|||||+++|+..++....-|.+.+ .++++++|+++.++++.+|-+++..++..+.........
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~ved------np~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~ 78 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVED------NPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNN 78 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCceeeecccC------ChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 48999999999999999999998876666666653 577999999999999999999999999866665443336
Q ss_pred ccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHH---hhcc-CccEEEEecCCCCHHHHHHhhhhcCcee
Q psy6983 138 MMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQ---TMVQ-KTMLEVHLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 138 ~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~---~~~~-~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
+++|++.+|...++..+..-|-+ ++..|.++.+.|. ...+ .||++||||+ +++++++||.+|||++
T Consensus 79 i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~--~~e~~l~RI~~RgR~~ 151 (216)
T COG1428 79 ILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDA--SLETLLRRIAKRGRPF 151 (216)
T ss_pred ccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeC--CHHHHHHHHHHhCCCc
Confidence 88999999987888887776664 8999999877532 2345 9999999999 9999999999999986
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=1e-22 Score=168.57 Aligned_cols=164 Identities=13% Similarity=0.007 Sum_probs=120.7
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.|.+++.+|+...++++++ +++++||+++++|||||||||++|+|.++.. +.++|+++..+. .
T Consensus 3 ~~~nvsk~y~~~~av~~v~--l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d----------~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVN--LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD----------P 70 (309)
T ss_pred eeeeeehhcCCceeeeeee--EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC----------H
Confidence 3556666677666666654 5569999999999999999999999999853 566666665422 2
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh----hHHhhhhHHHHHHhh------
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL----MYENASRWSLTFQTM------ 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~----~~~~~~~~s~~~~~~------ 175 (210)
.+.++++|||.|...|||++++..++..- ..+.+.++...++++.++|+.+||. ..++++++||+.+++
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARA 149 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHH
Confidence 24458899999999999999988876431 1333446667778899999999996 345578899987664
Q ss_pred -ccCccEEEEecCCC--CH------HHHHHhhhhcCceeEE
Q psy6983 176 -VQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLV 207 (210)
Q Consensus 176 -~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~ 207 (210)
+..|++++.+||.. || +.-+.+|.+.-.++||
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTiv 190 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEE
Confidence 56999988888764 44 4456677776666555
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=2.1e-22 Score=168.66 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=119.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
..+++++|+....+++++ +++++|++++|+||||||||||+|+|+|.+. +.++|+++..+. ..
T Consensus 5 ~~~ls~~y~~~~il~~ls--~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~----------~k 72 (258)
T COG1120 5 VENLSFGYGGKPILDDLS--FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS----------PK 72 (258)
T ss_pred EEEEEEEECCeeEEecce--EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC----------HH
Confidence 356666777666666655 5569999999999999999999999999754 445555544321 11
Q ss_pred hcccceeeeehhhH---hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------
Q psy6983 107 ENASRWSLTFQTMV---QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT------- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~---l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~------- 174 (210)
+..++++|++|.+. -++..+.+..+..+...++.....+|.+.+.++|+.+|+. ..+.+.++|++.++
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 33478999999964 3556677777766655555566677777899999999998 45557889998765
Q ss_pred hccCccEEEEecCCC--------CHHHHHHhhh-hcCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--------TPIKMMERSI-HSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~-~R~r~~~~~ 208 (210)
+++.|++++.+|||+ +--..+.++. ++|++++++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~v 195 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV 195 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999887 3344566666 558877765
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=2.2e-22 Score=165.65 Aligned_cols=152 Identities=12% Similarity=0.106 Sum_probs=104.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++||+++|+||||||||||+++|.++.. +.+.+.++....+ +.+..++ ++++|||||+++|.+.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~----~~~~~~R--~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE----KELAKLR--RKKIGFVFQNFNLLPD 97 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH----HHHHHHH--HHhEEEECccCCCCCC
Confidence 567779999999999999999999999999854 3444444432211 1233333 3679999999999998
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--H-HhhhhHHHHHHhh-------ccCccEEEEecCCC--C--
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--Y-ENASRWSLTFQTM-------VQKTMLEVHLDQPI--T-- 190 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~-~~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~--~-- 190 (210)
++...++..+ ..+...+..+....+.++++.+|+.+ . ..+.++|++.+++ +..|++++.+|||- |
T Consensus 98 ltv~ENv~lp-l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 98 LTVLENVELP-LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCHHHHHHhH-HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 8887776432 22222232244567888899999982 2 4578999998664 57999999999986 2
Q ss_pred -HH---HHHHhh-hhcCceeEEe
Q psy6983 191 -PI---KMMERS-IHSARFVLVI 208 (210)
Q Consensus 191 -pe---~~l~Ri-~~R~r~~~~~ 208 (210)
.+ .++..+ +++|..+++|
T Consensus 177 t~~~V~~ll~~~~~~~g~tii~V 199 (226)
T COG1136 177 TAKEVLELLRELNKERGKTIIMV 199 (226)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEE
Confidence 22 233333 3446677776
No 15
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=7e-22 Score=156.54 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=130.4
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcch---HHHH
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNL---LALM 105 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~---l~~~ 105 (210)
++-.+|+....++.++++ -++|++|.|+|.|||||||++||+.-+. .|.++++.+.-...-+|+-. ....
T Consensus 11 dlHK~~G~~eVLKGvSL~--A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQ--ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred HHHhhcccchhhcceeee--cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 333444444455555444 5899999999999999999999998763 36666766643222223111 1222
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
.+.+.+.+||||+++|+++++++.+..+.+..+.+.++.++.+++...|.++|+.+ ..++..+|++.++ ++
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa 168 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA 168 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh
Confidence 33446789999999999999999999888888889999999999999999999983 3445568888765 45
Q ss_pred cCccEEEEecCCC--CHHH------HHHhhhhcCceeEEe
Q psy6983 177 QKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~ 208 (210)
..|+..+|+++|. |||. .|+-+.+.||+-.|+
T Consensus 169 meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~V 208 (256)
T COG4598 169 MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVV 208 (256)
T ss_pred cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 7999999999987 7774 577889999998876
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-21 Score=166.37 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=110.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+|.||||||||+|++.++.. +.++|.++.... -...+..++++||+||+++|+..
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~-------~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS-------EAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCC-------hHHHHHHHhhccEEecccccccc
Confidence 566779999999999999999999999999842 455555544321 12344556899999999999988
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHHH
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPIK 193 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~ 193 (210)
.++..++..+ ..+...++.+...++.++|+.+||. ..+++.++|++.++ ++..|++++.+|+|. ||++
T Consensus 98 rTV~~NvA~P-Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 98 RTVFENVAFP-LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred chHHhhhhhh-HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 8877777553 4455567888888999999999998 44456789987654 578999999999987 6654
Q ss_pred ------HHHhhhhcCc
Q psy6983 194 ------MMERSIHSAR 203 (210)
Q Consensus 194 ------~l~Ri~~R~r 203 (210)
++++|.++--
T Consensus 177 T~sIL~LL~~In~~lg 192 (339)
T COG1135 177 TQSILELLKDINRELG 192 (339)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4555555433
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.4e-21 Score=163.11 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=115.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+.++.++...+.. .+++.++.||.+|+.||||||||||+|+|||+.. |.++++.+.+.. ....
T Consensus 6 ~~~~~~~~~~~a~~--di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~---------~~~~ 74 (345)
T COG1118 6 NNVKKRFGAFGALD--DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS---------NLAV 74 (345)
T ss_pred hhhhhhcccccccc--cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh---------ccch
Confidence 44444455555555 4566679999999999999999999999999853 444455322211 1112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hcc
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~ 177 (210)
..+++||+||+|.||+++++..++..+......+ +..+.+.++.++|..+.|. .-.++.++|++.++ ++.
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 3378999999999999999888875543222233 4556778899999999987 56667899998765 457
Q ss_pred CccEEEEecCCC--------CHHHHHHhhhhc-CceeEEe
Q psy6983 178 KTMLEVHLDQPI--------TPIKMMERSIHS-ARFVLVI 208 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--------~pe~~l~Ri~~R-~r~~~~~ 208 (210)
.|++++++||.. +.+.-+.+++.| +-+++.|
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV 194 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV 194 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEE
Confidence 999988777765 445556667776 5554443
No 18
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.1e-21 Score=165.64 Aligned_cols=158 Identities=13% Similarity=0.031 Sum_probs=110.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh-----cccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE-----NASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~vfQ~~--~l~ 122 (210)
+||++++||+++|+|+|||||||++++|+|+++-. .+....+.+.|+|.+++....+ .-++++|+||++ .|+
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~-~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLn 102 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP-NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLN 102 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCC-CCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcC
Confidence 67777999999999999999999999999987510 1122334455555544221111 225789999997 478
Q ss_pred hHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh-----hHHhhhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 123 TMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL-----MYENASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~-----~~~~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
|.+++..+..+....+... +..++++++.++|+.+|+. ...++.++||+|+++ +..|+++|-+|+|+
T Consensus 103 Pv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 103 PVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred ChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 8888766664432222223 4567778899999999997 244567999999774 57999999999998
Q ss_pred --------CHHHHHHhhhh-cCceeEEe
Q psy6983 190 --------TPIKMMERSIH-SARFVLVI 208 (210)
Q Consensus 190 --------~pe~~l~Ri~~-R~r~~~~~ 208 (210)
.--.+++.+.+ .|..+++|
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilI 210 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILI 210 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 22334455554 67777765
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=8.9e-21 Score=166.90 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=109.2
Q ss_pred CCcccccc-CCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQ-NHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
+.+++.++ +....+++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|+++... .
T Consensus 6 i~~l~~~~~~~~~~l~~--vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------~-- 72 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKG--IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL---------E-- 72 (356)
T ss_pred EEeEEEEeCCCCEEEee--eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------C--
Confidence 44555555 33333333 566679999999999999999999999999854 33444433211 1
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~ 176 (210)
...+.++|+||++.+++++++..+..... ...+.+..+...++.++++.+|+. ....+.++|+++++ ++
T Consensus 73 -~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 73 -PADRDIAMVFQNYALYPHMSVRENMAYGL-KIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred -HHHCCEEEEeCCccccCCCCHHHHHHhHH-hhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 11268999999999988777666653221 111223444456788999999997 34446789998765 46
Q ss_pred cCccEEEEecCCC--C------HHHHHHhhhhc-CceeEEe
Q psy6983 177 QKTMLEVHLDQPI--T------PIKMMERSIHS-ARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~------pe~~l~Ri~~R-~r~~~~~ 208 (210)
..|++++++||+. | ....++++.++ |.+++++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 191 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV 191 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7999999999987 2 22345556554 7888776
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-20 Score=165.46 Aligned_cols=164 Identities=13% Similarity=0.046 Sum_probs=111.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++.+++....+++ +|+++++||+++|+||||||||||+++|+|+.. +.+.++++... .
T Consensus 7 l~~~~l~~~~~~~~~l~~--isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---------~- 74 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDN--LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR---------S- 74 (351)
T ss_pred EEEEeEEEEECCeEEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------C-
Confidence 445667767765444444 556669999999999999999999999999864 33444443211 1
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
..+++++|+||++.+++++++..+...+ ......+..+...++.++++.+|+.. ...+.++|+++++ +
T Consensus 75 --~~~r~ig~vfQ~~~lfp~~tv~eNi~~~-l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 75 --IQQRDICMVFQSYALFPHMSLGENVGYG-LKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred --HHHCCEEEEeCCcccCCCCCHHHHHHHH-HhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 1126799999999998877766555321 11122234455567889999999973 3446789998765 4
Q ss_pred ccCccEEEEecCCC--CH------HHHHHhhhhc-CceeEEe
Q psy6983 176 VQKTMLEVHLDQPI--TP------IKMMERSIHS-ARFVLVI 208 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~ 208 (210)
+..|++++++||+. |+ ...+.++.++ +.+++++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 193 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 67999999999987 22 2344555443 7888876
No 21
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=1.9e-20 Score=159.19 Aligned_cols=169 Identities=11% Similarity=0.015 Sum_probs=117.5
Q ss_pred cccccccccccccccccCCCccccc---cCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cce
Q psy6983 14 GALFKCFPSQLHILLSVPFCFLCAS---QNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITA 85 (210)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~ 85 (210)
.|++|-|++........-=...+.. ......+..-.+|++++.||+.+|+|-||||||||+|++.++.+ +.+
T Consensus 8 ~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv 87 (386)
T COG4175 8 KNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILV 87 (386)
T ss_pred ecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEE
Confidence 4788888876554221110111000 00011222333788889999999999999999999999999854 444
Q ss_pred eeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHH
Q psy6983 86 YAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYE 163 (210)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~ 163 (210)
.|+++.... ...|..++ +++++||||++.|+|+.++..+..+ ...+.+.+..+.++++.+.|+.+||. ...
T Consensus 88 ~g~di~~~~----~~~Lr~~R--r~~~sMVFQ~FaLlPhrtVl~Nv~f-GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~ 160 (386)
T COG4175 88 DGKDIAKLS----AAELRELR--RKKISMVFQSFALLPHRTVLENVAF-GLEVQGVPKAEREERALEALELVGLEGYADK 160 (386)
T ss_pred CCcchhcCC----HHHHHHHH--hhhhhhhhhhhccccchhHhhhhhc-ceeecCCCHHHHHHHHHHHHHHcCchhhhhc
Confidence 444433211 11133333 3779999999999999998888754 24566778888889999999999998 566
Q ss_pred hhhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 164 NASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 164 ~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
+++++|++|+++ +-.||+++.+|+..
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 678999999875 46999999988865
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.6e-20 Score=161.34 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=113.4
Q ss_pred CCCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 31 PFCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 31 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
.+.+++.+++ ...++++++ +++++|+++||+||||||||||+|+|+|+... ..|.+.++|.+......+.+
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs--~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p------~~G~i~i~G~~~~~~~~~~~ 77 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVS--FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP------TSGEILVLGYDVVKEPAKVR 77 (293)
T ss_pred eecceEEEeCCCCEEEecee--EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC------CceEEEEcCEeCccCHHHHH
Confidence 3455666666 455565554 55699999999999999999999999998542 22222233322222122334
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
+++||++|++.+++.++...+... ....+..+...++.++.++++.+|+.. ......+|+++++ ++..|+
T Consensus 78 ~~igy~~~~~~~~~~lT~~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 78 RRIGYVPQEPSLYPELTVRENLEF-FARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred hheEEEccCCCCCccccHHHHHHH-HHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 679999999988777765554321 112222232445568999999999985 3446788888865 467999
Q ss_pred EEEEecCCC--CH------HHHHHhhhhcC-ceeEEe
Q psy6983 181 LEVHLDQPI--TP------IKMMERSIHSA-RFVLVI 208 (210)
Q Consensus 181 l~I~Ld~~~--~p------e~~l~Ri~~R~-r~~~~~ 208 (210)
++|++||+. || -.+++++.+++ +.||+.
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis 193 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS 193 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 999999987 44 35566777777 677764
No 23
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.3e-20 Score=152.12 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=93.6
Q ss_pred CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehh
Q psy6983 44 TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQT 118 (210)
Q Consensus 44 ~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~ 118 (210)
.+++ +|+++.+||+++|+||||||||||+|+|+|+.. +.+.|++...... ...+ .+.+.||||+
T Consensus 22 ~l~~--VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~------~~~~---~~~VQmVFQD 90 (252)
T COG1124 22 ALNN--VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR------AKAF---YRPVQMVFQD 90 (252)
T ss_pred hhcc--eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc------chhh---ccceeEEecC
Confidence 4444 556679999999999999999999999999853 4455544432110 1122 3678999999
Q ss_pred hH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEec
Q psy6983 119 MV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLD 186 (210)
Q Consensus 119 ~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld 186 (210)
+. ++|++++.....++ ....+.+..+ .++.++|+.+|+. ..+.++++||+.++ +...|+++|.+|
T Consensus 91 p~~SLnP~~tv~~~l~Ep-l~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 91 PYSSLNPRRTVGRILSEP-LRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred CccccCcchhHHHHHhhh-hccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 84 78887766555443 2222233333 3489999999997 45567899998755 468999999999
Q ss_pred CCC
Q psy6983 187 QPI 189 (210)
Q Consensus 187 ~~~ 189 (210)
++.
T Consensus 168 ptS 170 (252)
T COG1124 168 PTS 170 (252)
T ss_pred chh
Confidence 987
No 24
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.82 E-value=2e-20 Score=165.68 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=113.2
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|+++.. +.
T Consensus 15 L~l~~l~~~~~~~~~l~~--vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~---------~~- 82 (375)
T PRK09452 15 VELRGISKSFDGKEVISN--LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH---------VP- 82 (375)
T ss_pred EEEEEEEEEECCeEEEee--eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC---------CC-
Confidence 446777777765444444 556669999999999999999999999999864 3344443321 11
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
...+.++|+||++.+++++++..+..... .....+..+...++.++++.+|+. ....+.++|+++++ +
T Consensus 83 --~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 83 --AENRHVNTVFQSYALFPHMTVFENVAFGL-RMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred --HHHCCEEEEecCcccCCCCCHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 11267999999999998877766653221 111223344445678899999987 34446788988755 4
Q ss_pred ccCccEEEEecCCC--------CHHHHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--------TPIKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|++++++||.. .....++++.++ |.++++|-
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT 202 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVT 202 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67999999999987 334556666654 88888763
No 25
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.82 E-value=2.6e-20 Score=169.14 Aligned_cols=157 Identities=15% Similarity=0.003 Sum_probs=111.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHH-----HHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLAL-----MYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~vfQ~~~--l~ 122 (210)
+||++.+||++||+|+|||||||++++|.|+++.. +....+.+.++|.+++.. ....-++++|+||++. ++
T Consensus 28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~--~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sln 105 (539)
T COG1123 28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG--GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105 (539)
T ss_pred ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCC--CcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcC
Confidence 67788999999999999999999999999987542 133345555555544321 2222367899999984 67
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHH--hhhhHHHHHHhh-------ccCccEEEEecCCC--
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYE--NASRWSLTFQTM-------VQKTMLEVHLDQPI-- 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~--~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~-- 189 (210)
|.+++..++.+....+...+..+++.++.++|+.+|+. +.. +++++||+++++ +.+|+++|.+|||+
T Consensus 106 P~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaL 185 (539)
T COG1123 106 PVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185 (539)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 77776666544333333345778888999999999997 444 678999999764 57999999999998
Q ss_pred CHH------HHHHhhh-hcCceeEEe
Q psy6983 190 TPI------KMMERSI-HSARFVLVI 208 (210)
Q Consensus 190 ~pe------~~l~Ri~-~R~r~~~~~ 208 (210)
|+. .+++++. +.|..+++|
T Consensus 186 Dvt~q~qIL~llk~l~~e~g~a~l~I 211 (539)
T COG1123 186 DVTTQAQILDLLKDLQRELGMAVLFI 211 (539)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 333 3344444 556666655
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.82 E-value=3.3e-20 Score=162.49 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=103.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... + .......+++++|+||++.+++.
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~------~-~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL------S-NSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC------C-HHHHHHHhcCEEEEECCcccccc
Confidence 567779999999999999999999999999854 33344433211 0 01122234689999999988765
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
.+...+...+ ......+..+.+.++.++++.+|+.+ ...+.++|+++++ ++..|++++.+|++. ||+
T Consensus 97 ~tv~eni~~~-~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t 175 (343)
T TIGR02314 97 RTVFGNVALP-LELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 5554444221 11112234455567889999999973 3456789998755 467999999999987 444
Q ss_pred -----HHHHhhhhc-CceeEEee
Q psy6983 193 -----KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R-~r~~~~~~ 209 (210)
..++++.++ |.+++++-
T Consensus 176 ~~~i~~lL~~l~~~~g~tiiliT 198 (343)
T TIGR02314 176 TQSILELLKEINRRLGLTILLIT 198 (343)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 356666655 88888873
No 27
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=5.8e-20 Score=144.53 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=102.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+++.+++||.++|+||||||||||+-.|+|+.+ +.+.|+++.+..+ +-...++ .+++|+|||.+.|.|.
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldE----d~rA~~R--~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE----DARAALR--ARHVGFVFQSFHLIPN 102 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCH----HHHHHhh--ccceeEEEEeeecccc
Confidence 677789999999999999999999999999843 5556666554322 1122222 3679999999999999
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI 189 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~ 189 (210)
++...++..+ ..+...+..+.+..+.++|+++|+. ..+++.++|++.|+ ++..||+++-+|||-
T Consensus 103 ltAlENV~lP-leL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTG 175 (228)
T COG4181 103 LTALENVALP-LELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTG 175 (228)
T ss_pred chhhhhccch-hhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCC
Confidence 9988887553 2333335556667889999999998 67788899998765 468999999999875
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.81 E-value=2.8e-20 Score=163.59 Aligned_cols=163 Identities=13% Similarity=0.000 Sum_probs=110.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.. +.+.|+++... .
T Consensus 6 ~~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------~-- 72 (353)
T TIGR03265 6 SIDNIRKRFGAFTALKD--ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------P-- 72 (353)
T ss_pred EEEEEEEEeCCeEEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC---------C--
Confidence 34556666654333333 556679999999999999999999999999854 34444443210 1
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~ 176 (210)
..++.++|+||++.+++++++..+...+ ......+..+.+..+.++++.+|+. ....+.++|+++++ ++
T Consensus 73 -~~~r~ig~v~Q~~~lfp~~tv~eNi~~~-~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 73 -PQKRDYGIVFQSYALFPNLTVADNIAYG-LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred -HHHCCEEEEeCCcccCCCCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 1136799999999999887776665321 1111223445556788999999987 34456789998765 46
Q ss_pred cCccEEEEecCCC--C------HHHHHHhhhhc-CceeEEe
Q psy6983 177 QKTMLEVHLDQPI--T------PIKMMERSIHS-ARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~------pe~~l~Ri~~R-~r~~~~~ 208 (210)
..|++++++||+. | ....++++.++ +.+++++
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v 191 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7999999999986 2 23445566554 7888776
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=8.7e-20 Score=149.58 Aligned_cols=153 Identities=18% Similarity=0.080 Sum_probs=98.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHHhcccceeeeehhhHhhhHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMYENASRWSLTFQTMVQKTML 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~vfQ~~~l~~~~ 125 (210)
+|+++.+|++++|+||||||||||+++|+|+.... .|.+.++|.++.. .....++.++|++|++.+++.+
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT------RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 56777999999999999999999999999986421 2222333332211 0111235789999998766544
Q ss_pred HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH--
Q psy6983 126 EVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI-- 192 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe-- 192 (210)
+...+.... .........+....+.++++.+|+.+ ...+.++|+++++ ++..|++++++||+. |++
T Consensus 96 tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 96 TVYDNVAFP-LRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred cHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 443332110 01111122333456788899999873 3445678888755 467999999999987 333
Q ss_pred ----HHHHhhhhcCceeEEee
Q psy6983 193 ----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ----~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 175 ~~l~~~l~~~~~~~~tii~vs 195 (216)
T TIGR00960 175 RDIMRLFEEFNRRGTTVLVAT 195 (216)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 34555556688888774
No 30
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.81 E-value=7e-20 Score=149.62 Aligned_cols=168 Identities=18% Similarity=0.093 Sum_probs=102.1
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHHhccc
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMYENAS 110 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 110 (210)
+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.... .|.+.++|.++. ......++
T Consensus 5 ~l~~~~~~~~~l~~--~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 5 NLHKSFGDFHVLKG--IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD------SGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred EEEEEECCeEeecC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEECCccchhHHHHHh
Confidence 34444443323333 56667999999999999999999999999985421 122222222210 01112236
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccE
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl 181 (210)
.++|++|++.+++..+...+.........+....+....+.++++.+|+. ....+.++|+++++ ++..|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 79999999876654443333211100111112223345677888888886 34445678887754 4679999
Q ss_pred EEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 182 EVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 182 ~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+|++||+. |++ ..+.++.++++.++++.
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~s 192 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVT 192 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999987 333 45556656788888874
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.80 E-value=5.1e-20 Score=159.04 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=109.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++|+....++++ |+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.......+
T Consensus 8 i~i~~l~k~~~~~~~l~~v--sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p------~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGL--SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP------DAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred EEEEeEEEEECCeEEEecc--eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC------CceEEEECCEecccchHHHH
Confidence 4456666667654455555 566699999999999999999999999998542 12222233333211111224
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
+++||++|++.+++.++...+... .......+..+...++.++++.+++.. ......+|+++++ ++..|+
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLV-FGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 679999999876654444333211 011122233344456778899998873 3345678888755 468999
Q ss_pred EEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++|++||+. ||. ..+.++.++|+.+|++
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~ 194 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLT 194 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999987 554 5566777778888876
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.80 E-value=4e-20 Score=162.62 Aligned_cols=163 Identities=13% Similarity=0.026 Sum_probs=108.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++++....+++ +|+++.+||+++|+||||||||||+++|+|+.+ +.+.|+++.. .. .
T Consensus 6 ~~l~~~~~~~~~l~~--isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~---------~~---~ 71 (353)
T PRK10851 6 ANIKKSFGRTQVLND--ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR---------LH---A 71 (353)
T ss_pred EEEEEEeCCeEEEEE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC---------CC---H
Confidence 444555544333333 566679999999999999999999999999854 3333443321 01 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccc---cccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKM---MERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~---~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
..+.++|+||++.+++.++...+........ ...+..+...++.++++.+++. ....+.++|+++++ +
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1267999999998887766655553221110 1123344556788999999987 34456788988765 4
Q ss_pred ccCccEEEEecCCC--CH------HHHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TP------IKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|++++.+||+. |+ ...++++.++ +.+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vT 194 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVT 194 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 68999999999987 22 3455566555 78887763
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=8e-20 Score=151.71 Aligned_cols=169 Identities=14% Similarity=0.035 Sum_probs=102.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHHhc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMYEN 108 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~~ 108 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+.... .|.+.++|.++.. .....
T Consensus 4 ~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~------~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 4 RGLTKSFGGRTVLKG--VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD------SGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred EEEEEEECCEEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEEccccChhhHHHH
Confidence 344444543333334 56667999999999999999999999999985421 1222222222110 01122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~P 179 (210)
++.++|++|++.+++.++...+...........+..+....+.++++.+|+.. ...+.++|+++++ ++..|
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35789999998766544443332111000001122333456778899999863 3445678888755 46799
Q ss_pred cEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 180 MLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
+++|++||+. |++ ..++++.+ +++.++++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs 194 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 9999999987 333 34555554 488888874
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=3.3e-20 Score=163.57 Aligned_cols=169 Identities=11% Similarity=0.006 Sum_probs=109.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++|+....+++ +|+++.+|++++|+||||||||||+++|+|+....- ..|.+.++|.++.. .....+.
T Consensus 8 ~~~l~~~~~~~~~l~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~----~~G~i~~~g~~~~~-~~~~~r~ 80 (362)
T TIGR03258 8 IDHLRVAYGANTVLDD--LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG----LTGRIAIADRDLTH-APPHKRG 80 (362)
T ss_pred EEEEEEEECCeEEEee--eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC----CCEEEEECCEECCC-CCHHHCC
Confidence 4455555544333344 456669999999999999999999999999854321 00223333322210 0011267
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEE
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLE 182 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~ 182 (210)
++|+||++.+++++++..+.... ......+..+...++.++++.+|+. ....+.++|+++++ ++..|+++
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~-l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFG-LRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999998877766655321 1111223344456788899999987 44556789988765 46799999
Q ss_pred EEecCCC--C------HHHHHHhhhhc--CceeEEe
Q psy6983 183 VHLDQPI--T------PIKMMERSIHS--ARFVLVI 208 (210)
Q Consensus 183 I~Ld~~~--~------pe~~l~Ri~~R--~r~~~~~ 208 (210)
+++|++. | ....++++.++ |.+++++
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~v 195 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCV 195 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999987 3 33445566665 6787776
No 35
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=1.3e-19 Score=148.64 Aligned_cols=153 Identities=12% Similarity=0.027 Sum_probs=97.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+|+||||||||+++|+|+... ..|.+.++|.++.......++.++|++|++.+++.++...
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP------DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC------CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 5666799999999999999999999999998542 1222222222221101112367999999986655433333
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... .........+....+.++++.+|+. ......++|+++++ ++..|++++++||+. |+.
T Consensus 98 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 176 (218)
T cd03266 98 NLEYF-AGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176 (218)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 22110 0111112233345678899999987 34456678888755 467999999999987 333
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 177 ~~l~~~~~~~~tii~~t 193 (218)
T cd03266 177 EFIRQLRALGKCILFST 193 (218)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 44555656688888874
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9e-20 Score=149.98 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=100.5
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccccee
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWS 113 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (210)
+++++++.....++ +|+++.+|++++|+||||||||||+++|+|..... .|.+.++|.++.......++.++
T Consensus 5 ~~~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 5 NLVKKYGDFEAVRG--VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT------SGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred EEEEEECCEEeeec--eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEecCcChHHHhhcEE
Confidence 44444544333344 55666999999999999999999999999985421 12222222221100011235689
Q ss_pred eeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEE
Q psy6983 114 LTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 114 ~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
|+||++.+++.++...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|+++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIH-ARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred EecCCccccccCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998765544433322110 01111122334456788999999873 3345678888755 4679999999
Q ss_pred ecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 185 LDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+||+. |++ ..++++.++ ++.++++.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~t 189 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99987 333 234444444 78888763
No 37
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.6e-20 Score=159.29 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=101.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHh-cccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYE-NASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~-~~~~~~~vfQ~~~--l~ 122 (210)
+||++++||+++|+||||||||||+++|+|+... .+++..|.+.++|.++. ....+ ..+.++|+||++. ++
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~--~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~ 103 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY--PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLN 103 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcC
Confidence 6677799999999999999999999999998642 12223333444443321 11111 1246999999973 55
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-------hccCccEEEEecCCC-
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-----YENASRWSLTFQT-------MVQKTMLEVHLDQPI- 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~- 189 (210)
+.++...+..+...........+.+..+.++++.+|+.+ ...+.++|+++++ ++..|+++|.+|++.
T Consensus 104 p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~ 183 (326)
T PRK11022 104 PCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTA 183 (326)
T ss_pred CcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 544332222111111112233455567889999999952 2345789998866 457999999999987
Q ss_pred -CHH------HHHHhhhh-cCceeEEee
Q psy6983 190 -TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 190 -~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
|+. ..++++.+ +|..+++|-
T Consensus 184 LD~~~~~~il~lL~~l~~~~g~til~iT 211 (326)
T PRK11022 184 LDVTIQAQIIELLLELQQKENMALVLIT 211 (326)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444 45666665 588888763
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.6e-19 Score=146.17 Aligned_cols=150 Identities=13% Similarity=-0.014 Sum_probs=98.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++... .++.++|++|++.+++..+...
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~---~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP------DSGEVLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCCchhHH---HHccEEEeccCCcCCcCCcHHH
Confidence 5667799999999999999999999999998643 233334444443221 2357899999986654433332
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... ....+....+....+.++++.+|+. ......++|+++++ ++..|++++++||+. |++
T Consensus 90 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~ 168 (210)
T cd03269 90 QLVYL-AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168 (210)
T ss_pred HHHHH-HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 22100 0111112233345678888988886 23445678888755 457999999999987 433
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 169 ~~l~~~~~~~~tii~~s 185 (210)
T cd03269 169 DVIRELARAGKTVILST 185 (210)
T ss_pred HHHHHHHHCCCEEEEEC
Confidence 45666666788888764
No 39
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.79 E-value=3.5e-19 Score=146.07 Aligned_cols=153 Identities=13% Similarity=0.049 Sum_probs=96.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHH-hcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMY-ENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|+..+ ..|.+.++|.++.. ... ..++.++|++|++.+++.
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP------TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC------CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 5667799999999999999999999999998642 12222233332211 001 112568999999876654
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
++...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|++++++||+. |++
T Consensus 97 ~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 97 LTALENVELP-LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CcHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 4433332110 01111112223346778899999873 3345678888755 467999999999987 333
Q ss_pred -----HHHHhhhh-cCceeEEee
Q psy6983 193 -----KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~-R~r~~~~~~ 209 (210)
..++++.+ +++.++++.
T Consensus 176 ~~~l~~~l~~~~~~~~~tii~~s 198 (218)
T cd03255 176 GKEVMELLRELNKEAGTTIVVVT 198 (218)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEE
Confidence 44556655 588888874
No 40
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.79 E-value=2.3e-19 Score=156.54 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=101.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+|+++++||+++|+|+||||||||+++|+|+.. +.+.|+++... + .......+++++|+||++ .++
T Consensus 40 vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~------~-~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM------K-DDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC------C-HHHHHHHhCceEEEecCchhhcC
Confidence 677789999999999999999999999999864 33333333211 0 111222336799999997 466
Q ss_pred hHHHHHHcCCCCccccc-ccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 123 TMLEVHLDQPITPIKMM-ERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
+.++...++........ +.+..+.+..+.++++.+|+. ....+.++|+++++ ++..|+++|.+|++.
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 55554444321111111 123444556778899999995 23445789998865 467999999999987
Q ss_pred CHH------HHHHhhhhc-CceeEEee
Q psy6983 190 TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 190 ~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
|+. .++.++.++ +..+++|.
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iT 219 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIA 219 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 333 556677654 88888773
No 41
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=1.3e-19 Score=158.55 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=109.0
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++.+|+....++++ |+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.+........+
T Consensus 42 i~i~nl~k~y~~~~~l~~i--s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p------~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGL--SFTVASGECFGLLGPNGAGKSTIARMILGMTSP------DAGKITVLGVPVPARARLAR 113 (340)
T ss_pred EEEEEEEEEECCEEEEeee--EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC------CceEEEECCEECCcchHHHh
Confidence 4467777777765555555 555699999999999999999999999998642 12222233322211111223
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pd 180 (210)
+.+||+||++.+++.++...+.... ......+..+....+.++++.+++. ......++|+++++ ++..|+
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 6799999998765444333322100 0111222233445677888888887 33445678888755 467999
Q ss_pred EEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++|++||+. ||+ ..++++.++|+.++++
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilis 228 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999987 443 4456666678888876
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.78 E-value=1.7e-19 Score=155.40 Aligned_cols=169 Identities=9% Similarity=-0.039 Sum_probs=104.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.+........++.
T Consensus 7 ~~~l~~~~~~~~~l~~--vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 7 LVGVSKSYGDKVVVND--LSFTIARGECFGLLGPNGAGKSTIARMLLGMISP------DRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred EEeEEEEeCCeEEEcc--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEECcccHHHHhhc
Confidence 4555555654334444 4566799999999999999999999999998542 1222222222211111122367
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEE
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLE 182 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~ 182 (210)
++|++|++.+++.++...+.... ......+..+....+.++++.+++.+ .....++|+++++ ++..|+++
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVF-GRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998665443333322100 00111122233345677888888873 3445678888765 46799999
Q ss_pred EEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 183 VHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 183 I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|++||+. ||+ ..++++.++|+.++++.
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~s 192 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 192 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999987 444 45666666788888874
No 43
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2e-19 Score=149.73 Aligned_cols=168 Identities=13% Similarity=0.035 Sum_probs=110.3
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~ 108 (210)
.+++++++|... ....-.+|+++++|+.++|+|+||||||||+++|+|++.... +.+.++|.+.. ......
T Consensus 5 ~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~------G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 5 EAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS------GEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred EEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC------CEEEECCeeccchhhHHHh
Confidence 346666667665 222233567779999999999999999999999999864321 11122222211 223345
Q ss_pred ccceeeeehhhH--hh--hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 109 ASRWSLTFQTMV--QK--TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 109 ~~~~~~vfQ~~~--l~--~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
++++|+|||++. ++ +..+-+... ...+..+..+...++.++++.+|+. ..+.+..+|++..+ +
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg----~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhc----hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 588999999983 22 333334333 2233445566778899999999998 34445678888755 3
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|+++|++|+|. ||. ..+..+.+. +.++++++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56999999999998 332 334444445 57788775
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=2.9e-19 Score=148.21 Aligned_cols=166 Identities=15% Similarity=-0.004 Sum_probs=100.8
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.+.++... + ....
T Consensus 4 ~~l~~~~~~~~~l~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~-~~~~-- 72 (236)
T cd03219 4 RGLTKRFGGLVALDD--VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL------P-PHEI-- 72 (236)
T ss_pred eeeEEEECCEEEecC--ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC------C-HHHH--
Confidence 344444443223333 566679999999999999999999999999854 23333332210 0 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccc---------cchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh--
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMME---------RSIHSARWELTQCQICSQALM--YENASRWSLTFQT-- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~---------~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-- 174 (210)
.+..++|++|++.+++.++...+.......... ....+....+.++++.+|+.. .....++|+++++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 124689999998766543333322110000000 012233456788889888862 3445678888755
Q ss_pred -----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|.+||+. |++ ..++++.++|+.++++.
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vs 200 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVE 200 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 467999999999987 333 45556666788888763
No 45
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.78 E-value=3.9e-19 Score=148.79 Aligned_cols=174 Identities=14% Similarity=0.068 Sum_probs=103.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|... +.+.++++....... .......
T Consensus 6 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~--~~~~~~~ 81 (250)
T PRK11264 6 VKNLVKKFHGQTVLHG--IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS--QQKGLIR 81 (250)
T ss_pred EeceEEEECCeeeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccccccc--chhhHHH
Confidence 4555555654333444 556679999999999999999999999999854 233333322100000 0000111
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hcc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~ 177 (210)
..++.++|++|++.+++..+...+..............+....+.++++.+|+. ....+.++|+++++ ++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 223578999999876654443333211000011112223345677888888886 23445678888755 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|+++|.+||+. |+. .+++++.++++.++++.
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~t 201 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVT 201 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999999987 333 34455666788888874
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.4e-19 Score=145.10 Aligned_cols=167 Identities=11% Similarity=-0.016 Sum_probs=100.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....+.+
T Consensus 4 ~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p------~~G~i~~~g~~~~~-~~~~~~~i 74 (213)
T cd03259 4 KGLSKTYGSVRALDD--LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP------DSGEILIDGRDVTG-VPPERRNI 74 (213)
T ss_pred eeeEEEeCCeeeecc--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CCeEEEECCEEcCc-CchhhccE
Confidence 344444543333333 5666799999999999999999999999998542 12222222222110 00112568
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|++|++.+++.++...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|+++|
T Consensus 75 ~~v~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 75 GMVFQDYALFPHLTVAENIAFG-LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEcCchhhccCCcHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998766544433332110 00111122233345778889998873 3345678888755 467999999
Q ss_pred EecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 184 HLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++||+. |++ .++.++.+ +|+.++++.
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 188 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVT 188 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999987 333 33444444 488888764
No 47
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.78 E-value=2.5e-19 Score=154.35 Aligned_cols=153 Identities=9% Similarity=-0.026 Sum_probs=99.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+||||||||||+++|+|+..+ ..|.+.++|.++.......++.++|++|++.+++.++...
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP------TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 5666799999999999999999999999998642 1222222332221111112357999999987765544433
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... ......+..+....+.++++.+|+.. .....++|+++++ ++..|+++|++||+. ||+
T Consensus 86 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 86 NLEMM-GRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 32110 11112223334456788999999873 3345678888755 467999999999987 554
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++|+.++++.
T Consensus 165 ~~l~~~~~~g~tvi~~s 181 (302)
T TIGR01188 165 DYIRALKEEGVTILLTT 181 (302)
T ss_pred HHHHHHHhCCCEEEEEC
Confidence 45666666788888763
No 48
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.8e-19 Score=155.82 Aligned_cols=153 Identities=11% Similarity=-0.045 Sum_probs=98.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+|+++++||+++|+|+||||||||+++|+|+.. +.+.++++... + .......+++++|+||++ .++
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~------~-~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA------D-PEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC------C-HHHHHHHhCCEEEEEcCchhhcC
Confidence 667779999999999999999999999999854 33333333211 0 011112236799999997 355
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+.++...+..............+...++.++++.+|+. . ...+.++|+++++ ++..|+++|.+|++. |
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 54443332211100111223344556788999999995 2 3335689998865 457999999999987 3
Q ss_pred HH------HHHHhhhhc-CceeEEee
Q psy6983 191 PI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+. ..+.++.++ |..+++|-
T Consensus 187 ~~~~~~i~~lL~~l~~~~g~til~iT 212 (327)
T PRK11308 187 VSVQAQVLNLMMDLQQELGLSYVFIS 212 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 33 245555554 88888773
No 49
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.78 E-value=3.4e-19 Score=157.96 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=115.8
Q ss_pred ccccccccccccccccC-----CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cc
Q psy6983 15 ALFKCFPSQLHILLSVP-----FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----IT 84 (210)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~ 84 (210)
|++|.|+.+.......- =.....+++....+++ +||++++||+++|+|+||||||||+++|+|+.. +.
T Consensus 5 ~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~--vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~ 82 (382)
T TIGR03415 5 NVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVAN--ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL 82 (382)
T ss_pred eeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 78888887655431110 1111222333333434 566679999999999999999999999999864 33
Q ss_pred eeeccccccccccCcchHHHHHhc-ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--
Q psy6983 85 AYAEPVNLWRDVKGHNLLALMYEN-ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-- 161 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-- 161 (210)
+.+++.. ..+...+ ....++. +++++|+||++.+++.++...+.... ......+..+.+..+.++++.+|+..
T Consensus 83 idG~~~~--~~i~~~~-~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~-~~~~g~~~~~~~~~a~e~le~vgL~~~~ 158 (382)
T TIGR03415 83 VKDGDGS--IDVANCD-AATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG-LEMQGMPEAERRKRVDEQLELVGLAQWA 158 (382)
T ss_pred ECCEecc--cccccCC-HHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 3332100 0000001 0111111 25799999999888765555444211 11112233444567888999999973
Q ss_pred HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 162 YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 162 ~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
...+.++|+++++ ++..|++++++|++. ||. ..+.++.++ +++++++.
T Consensus 159 ~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iT 222 (382)
T TIGR03415 159 DKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVS 222 (382)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3445688988865 467999999999987 443 455666654 88888874
No 50
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.78 E-value=1.7e-18 Score=141.62 Aligned_cols=150 Identities=16% Similarity=0.039 Sum_probs=95.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh-----hH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK-----TM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~-----~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++. . .++.++|++|++.+. +.
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p------~~G~i~~~g~~~~-~---~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP------TSGSIRVFGKPLE-K---ERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC------CCCEEEECCccHH-H---HHhheEEeccccccccCCCCcH
Confidence 5666799999999999999999999999998643 2333444444432 1 125799999997542 23
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
.+.+................+....+.++++.+|+.+ ...+.++|+++++ ++..|+++|.+||+. |++
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 167 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 3333221110000001111223356778888888863 3345678888755 467999999999987 443
Q ss_pred -----HHHHhhhhcCceeEEee
Q psy6983 193 -----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 168 ~~~l~~~l~~~~~~~~tvi~~s 189 (213)
T cd03235 168 QEDIYELLRELRREGMTILVVT 189 (213)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe
Confidence 44555555778888874
No 51
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=4e-19 Score=145.90 Aligned_cols=166 Identities=12% Similarity=-0.007 Sum_probs=98.9
Q ss_pred CccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 33 CFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
.+++++++. ....++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.......++
T Consensus 4 ~~l~~~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 4 RNLTKTYKKGTKPAVDD--LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP------TSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred EeeEEEeCCCCceeecc--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEecccchHHHhh
Confidence 344444543 223333 5666799999999999999999999999998542 122222223222111112235
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccE
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl 181 (210)
.++|++|++.+++..+...+.... .........+....+.++++.+++.+ .....++|+++++ ++..|++
T Consensus 76 ~i~~v~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 76 SLGYCPQFDALFDELTVREHLRFY-ARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred hEEEecCcCCccccCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 689999998666443333322110 01111122233346778888888862 3445678887654 5679999
Q ss_pred EEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 182 EVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 182 ~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++++||+. |+. ..++++.+ ++.++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~ 188 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILT 188 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 99999987 433 33555544 5677766
No 52
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=5e-19 Score=156.00 Aligned_cols=152 Identities=11% Similarity=0.075 Sum_probs=103.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH-hcccceeeeehhhHhhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY-ENASRWSLTFQTMVQKT 123 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~vfQ~~~l~~ 123 (210)
+|+++++||+++|+||||||||||+++|+|+.. +.+.|+++... +. ...+ ..++.++|+||++.+++
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~------~~-~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------SP-VELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcC------CH-HHHHHHHhCcEEEEECCCcCCC
Confidence 566679999999999999999999999999864 44444444321 11 1111 11367999999998887
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
.+++..++... ......+..+..+++.++++.+|+. ....+.++|+++++ ++..|++++.+||+. ||.
T Consensus 85 ~~TV~eNi~~~-~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 85 HMTILQNTSLG-PELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 66655443211 1112233444556788999999997 34446688998865 467999999999987 443
Q ss_pred ------HHHHhhhhc-CceeEEee
Q psy6983 193 ------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R-~r~~~~~~ 209 (210)
..+.++.++ +++++++.
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vT 187 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFIT 187 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEe
Confidence 345566544 88888763
No 53
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.2e-19 Score=156.33 Aligned_cols=152 Identities=10% Similarity=0.057 Sum_probs=98.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.|.++... + .......++.++|+||++.+++.
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~------~-~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAL------S-EKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcC------C-HHHHHHHhcCEEEEeCCCccCCC
Confidence 567779999999999999999999999999864 33333333211 0 01111223679999999877654
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
++...+.... ......+..+....+.++++.+|+.. ...+.++|+++++ ++..|++++++||+. |++
T Consensus 97 ~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~ 175 (343)
T PRK11153 97 RTVFDNVALP-LELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 4443332110 11112223334456788899999873 3445688988755 467999999999987 433
Q ss_pred -----HHHHhhhh-cCceeEEee
Q psy6983 193 -----KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~-R~r~~~~~~ 209 (210)
..+.++.+ +|+.++++.
T Consensus 176 ~~~l~~~L~~l~~~~g~tiilvt 198 (343)
T PRK11153 176 TRSILELLKDINRELGLTIVLIT 198 (343)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 34555544 488888874
No 54
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=8.7e-19 Score=144.68 Aligned_cols=171 Identities=14% Similarity=0.081 Sum_probs=101.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHH---HHhcc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLAL---MYENA 109 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~ 109 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+..- ....+..|.+.++|.++... ....+
T Consensus 4 ~~l~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 4 RDLNVYYGDKHALKD--ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDL-IPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEEEEcCCceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc-ccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 344444544333334 5666799999999999999999999999998610 00012233344444433210 11223
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh--HHh--hhhHHHHHHh-------hcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM--YEN--ASRWSLTFQT-------MVQ 177 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~--~~~--~~~~s~~~~~-------~~~ 177 (210)
+.++|+||++.++ .++...+.... ...... ...+....+.++++.+|+.. ... ..++|+++++ ++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYG-LRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhH-HHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 5789999998765 34443333111 011111 11223456778899999873 233 3778888755 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|++++++||+. |++ ..+.++.++ +.++++.
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~s 197 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVT 197 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEe
Confidence 999999999987 333 344555544 6777653
No 55
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=7.5e-20 Score=150.71 Aligned_cols=166 Identities=13% Similarity=0.013 Sum_probs=114.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++.+++.-.++.+++ +++++||+++|+|||||||||++++|+|++. +.+.|+++.++ +....
T Consensus 8 ~~l~k~FGGl~Al~~Vs--l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l---------~p~~i 76 (250)
T COG0411 8 RGLSKRFGGLTAVNDVS--LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL---------PPHRI 76 (250)
T ss_pred ccceeecCCEEEEecee--EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC---------CHHHH
Confidence 45566677766666654 5569999999999999999999999999864 55566665542 22223
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcc------cc--c---ccchhhhHHHHHHHHHHcchhhHH--hhhhHHHH---
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPI------KM--M---ERSIHSARWELTQCQICSQALMYE--NASRWSLT--- 171 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~------~~--~---~~s~~e~~~~~~~~L~~~gl~~~~--~~~~~s~~--- 171 (210)
.+..++-.||...+|+.+++..+...... .. . .+...+.++++.++|+.+||.+.. ...+++++
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 33567888999998888777666532211 11 1 123456677899999999998322 23345544
Q ss_pred ----HHhhccCccEEEEecCCC--------CHHHHHHhhhh-cCceeEEee
Q psy6983 172 ----FQTMVQKTMLEVHLDQPI--------TPIKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 172 ----~~~~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~-R~r~~~~~~ 209 (210)
.++++..|.+++++||.. +-...+..+++ .|.++++||
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIE 207 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE 207 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 355678999988888876 33345666676 458999998
No 56
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=3.9e-19 Score=148.02 Aligned_cols=169 Identities=17% Similarity=0.072 Sum_probs=101.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHHhcc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMYENA 109 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~~~~ 109 (210)
.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|.... ..|.+.++|.++. ......+
T Consensus 5 ~~l~~~~~~~~il~~--~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 5 KNVSKHFGPTQVLHN--IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI------TSGDLIVDGLKVNDPKVDERLIR 76 (240)
T ss_pred EeEEEEECCeEEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEECCcCChhHHHHh
Confidence 344444443223333 5666799999999999999999999999998542 1222222222211 0011113
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
+.++|++|++.+++.++...+..............+....+.++++.+|+.. ...+.++|+++++ ++..|+
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred hceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 5689999997665443433332111101111222334456778899998862 3345678887754 467999
Q ss_pred EEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+++++||+. |++ ..++++.++++.++++-
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 193 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVT 193 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999987 332 45555566788888763
No 57
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.78 E-value=8e-19 Score=143.57 Aligned_cols=168 Identities=14% Similarity=0.059 Sum_probs=100.7
Q ss_pred CccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHh
Q psy6983 33 CFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYE 107 (210)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~ 107 (210)
.+++++++ ....+++ +|+++++|++++|+||||||||||+++|+|+.... .|.+.++|.++. .....
T Consensus 5 ~~l~~~~~~~~~il~~--is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~------~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 5 HNVSKAYPGGVAALHD--VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS------RGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred EeeeEEeCCCceeecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEEcccCCHHHHHH
Confidence 44444552 2223333 56667999999999999999999999999985421 122222222210 11111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.++.++|++|++.+++..+...+.... .........+....+.++++.+|+.+ ...+.++|+++++ ++..
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENVALP-LEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred HHhheEEEecChhhccCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 235789999998766544433332110 00111122233356778899888873 3345678888755 4679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+++|++||+. |++ ..++++.+.++.++++.
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 194 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVAT 194 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999999987 332 33444445688888774
No 58
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.7e-19 Score=158.61 Aligned_cols=164 Identities=10% Similarity=0.013 Sum_probs=110.2
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|+++.. ..
T Consensus 20 l~l~~v~~~~~~~~~l~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~---------~~- 87 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDD--VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH---------VP- 87 (377)
T ss_pred EEEEeEEEEECCEEEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC---------CC-
Confidence 345666666654333433 566679999999999999999999999999854 3444444321 11
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++.+++++++..+.... ....+.+..+.+.++.++++.+++. ....+.++|+++++ +
T Consensus 88 --~~~r~ig~vfQ~~~lfp~ltv~eNi~~~-l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 88 --PYQRPINMMFQSYALFPHMTVEQNIAFG-LKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred --HHHCCEEEEeCCCccCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 1236799999999999887776665321 1111223444556788899999987 33445678988765 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEe
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVI 208 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~ 208 (210)
+..|++++++|++. |+. ..+.++.+ .|.+++++
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 206 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 67999999999987 333 23445554 47777776
No 59
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=5.3e-19 Score=144.54 Aligned_cols=167 Identities=11% Similarity=0.024 Sum_probs=100.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|...+. .|.+.++|.++.. ....++.+
T Consensus 4 ~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~------~G~v~~~g~~~~~-~~~~~~~i 74 (213)
T cd03301 4 ENVTKRFGNVTALDD--LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT------SGRIYIGGRDVTD-LPPKDRDI 74 (213)
T ss_pred EeeEEEECCeeeeec--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEECCc-CCcccceE
Confidence 344445544333444 46667999999999999999999999999986421 1112222222110 00112568
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|++|++.+++..+...+.... .........+....+.++++.+|+.+ ...+.++|+++++ ++..|++++
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFG-LKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEecChhhccCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998765443333332110 01111122333456778889888863 3334678888755 457999999
Q ss_pred EecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 184 HLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++||+. |+. .+++++.+ +++.++++.
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~s 188 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999987 444 44555555 488888774
No 60
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6e-19 Score=147.06 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=102.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch-------HHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL-------LAL 104 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~-------l~~ 104 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|.... ..|.+.++|.++ ...
T Consensus 5 ~~~l~~~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T PRK11124 5 LNGINCFYGAHQALFD--ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP------RSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred EEeeEEEECCeeeEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEecccccccchhh
Confidence 3445555543333333 5666799999999999999999999999998542 112222222221 001
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
....++.++|++|++.+++.++...+.........+....+....+.++++.+|+.. ...+.++|+++++ +
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 112235789999998776544443332110011111122233345778888888863 3335678887754 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. |++ .+++++.++++.++++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 198 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 67999999999987 443 34556656788888763
No 61
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.78 E-value=1.2e-18 Score=145.16 Aligned_cols=169 Identities=16% Similarity=0.067 Sum_probs=102.2
Q ss_pred CccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHHh
Q psy6983 33 CFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMYE 107 (210)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~ 107 (210)
.+++++++ .....++ +|+++.+|++++|+||||||||||+++|+|+..+ ..|.+.++|.++.. ....
T Consensus 5 ~~l~~~~~~~~~il~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 5 ENLSKVYPNGKQALKN--INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP------SSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred EeeeeecCCCcceeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC------CccEEEECCEEhhhCCHHHHHH
Confidence 44444454 2223333 5666799999999999999999999999998642 12222233322211 1111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccc-------ccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh----
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIK-------MMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT---- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~-------~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~---- 174 (210)
.++.++|++|++.+++.++...+....... .......+....+.++++.+|+.. .....++|+++++
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 235789999998766544444333211100 011112233456778889988863 3345678887755
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..++++.+ +++.++++.
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t 203 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 467999999999987 433 34555544 478888764
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.2e-19 Score=157.81 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=106.9
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.. +.+.++++.. ..
T Consensus 5 ~i~~l~~~~~~~~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~---------~~-- 71 (369)
T PRK11000 5 TLRNVTKAYGDVVISKD--INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND---------VP-- 71 (369)
T ss_pred EEEEEEEEeCCeEEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC---------CC--
Confidence 34555556654333344 556669999999999999999999999999854 3333333321 01
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
...+.++|+||++.+++.++...+.... ......+..+.+.++.++++.+|+.. ...+.++|+++++ ++
T Consensus 72 -~~~~~i~~v~Q~~~l~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 72 -PAERGVGMVFQSYALYPHLSVAENMSFG-LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred -HhHCCEEEEeCCcccCCCCCHHHHHHhH-HhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 1125799999999887665554443211 11111233344457888999999873 3345688988765 46
Q ss_pred cCccEEEEecCCC--CHHH------HHHhhhhc-CceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPIK------MMERSIHS-ARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R-~r~~~~~~ 209 (210)
..|++++++||+. |+.. .++++.++ +.+++++.
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vT 191 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 7999999999987 4443 34556554 88888763
No 63
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=1.2e-18 Score=143.43 Aligned_cols=153 Identities=15% Similarity=0.037 Sum_probs=96.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHhcccceeeeehhhHhhhHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYENASRWSLTFQTMVQKTML 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~vfQ~~~l~~~~ 125 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++. ......++.++|++|++.+++..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP------SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 5677799999999999999999999999998642 1222222332221 11111236789999998665444
Q ss_pred HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH--
Q psy6983 126 EVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI-- 192 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe-- 192 (210)
+...+.... .........+....+.++++.+++.. ...+.++|+++++ ++..|+++|++||+. |++
T Consensus 95 tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 95 TVYDNVAIP-LIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred cHHHHHHhH-HHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 333332111 01111222333345678888888863 3345678887754 467999999999987 443
Q ss_pred ----HHHHhhhhcCceeEEee
Q psy6983 193 ----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ----~~l~Ri~~R~r~~~~~~ 209 (210)
.++.++.+++..++++.
T Consensus 174 ~~l~~~l~~~~~~~~tiii~s 194 (222)
T PRK10908 174 EGILRLFEEFNRVGVTVLMAT 194 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 45556656678888774
No 64
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.77 E-value=8.2e-19 Score=143.39 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=95.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++.+|++++|+||||||||||+++|+|+... .+.++++.. .+. ......++.++|++|++.+++.
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~------~~~-~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD------LRG-RAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEccc------CCH-HHHHHHHHheEEEecCchhccC
Confidence 5667799999999999999999999999998542 222322211 000 1111123578999999877654
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
++...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|++++.+||+. |++
T Consensus 93 ~t~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 171 (214)
T cd03292 93 RNVYENVAFA-LEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171 (214)
T ss_pred CcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 4443332110 01111122333456778888888863 3345678887755 467999999999987 332
Q ss_pred -----HHHHhhhhcCceeEEee
Q psy6983 193 -----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 172 ~~~~~~~l~~~~~~~~tiiivt 193 (214)
T cd03292 172 TWEIMNLLKKINKAGTTVVVAT 193 (214)
T ss_pred HHHHHHHHHHHHHcCCEEEEEe
Confidence 34445555678887764
No 65
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=1.4e-18 Score=141.24 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=95.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch-----HHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL-----LALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|..... .|.+.++|.++ .......++.++|++|++.+++.
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD------SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC------CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 56667999999999999999999999999986421 12222222221 01111123579999999877654
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C---
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T--- 190 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~--- 190 (210)
.+...+.... .........+....+.++++.+|+.. .....++|+++++ ++..|+++|.+||+. |
T Consensus 91 ~t~~e~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 91 ETVEENLDLG-LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 4433332110 00111122333456788899888862 2334678877654 467999999999987 2
Q ss_pred ---HHHHHHhhhhcCceeEEee
Q psy6983 191 ---PIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 191 ---pe~~l~Ri~~R~r~~~~~~ 209 (210)
....++++.++++.++++.
T Consensus 170 ~~~l~~~l~~~~~~~~tii~~s 191 (206)
T TIGR03608 170 RDEVLDLLLELNDEGKTIIIVT 191 (206)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe
Confidence 2334455555688888764
No 66
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=6.4e-19 Score=157.09 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=113.2
Q ss_pred ccccccccccccc-----cccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cc
Q psy6983 15 ALFKCFPSQLHIL-----LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----IT 84 (210)
Q Consensus 15 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~ 84 (210)
|++|.|....... ..+.+..+...++...++++ +|+++++|++++|+||||||||||+++|+|+.. +.
T Consensus 9 ~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~ 86 (400)
T PRK10070 9 NLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKD--ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86 (400)
T ss_pred eeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEe--EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence 5777777743211 11223333333433323333 667779999999999999999999999999854 33
Q ss_pred eeeccccccccccCcchHHHHH-hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--h
Q psy6983 85 AYAEPVNLWRDVKGHNLLALMY-ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--M 161 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~ 161 (210)
+.++++... +. ...+ ..++.++|+||++.+++.++...+.... ......+..+....+.++++.+|+. .
T Consensus 87 i~G~~i~~~------~~-~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~-~~~~~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 87 IDGVDIAKI------SD-AELREVRRKKIAMVFQSFALMPHMTVLDNTAFG-MELAGINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred ECCEECCcC------CH-HHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 444433211 00 1111 1125799999998777655444333211 1111222334445678899999997 3
Q ss_pred HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 162 YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 162 ~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
...+.++|+++++ ++..|++++++||+. ||. ..+.++.+ ++++++++.
T Consensus 159 ~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT 222 (400)
T PRK10070 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4446788988765 467999999999987 443 35566654 478888763
No 67
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.77 E-value=9.1e-19 Score=142.73 Aligned_cols=162 Identities=12% Similarity=0.012 Sum_probs=99.8
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccccee
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWS 113 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (210)
+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++... ...++.++
T Consensus 5 ~l~~~~~~~~~l~~--~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~-~~~~~~i~ 75 (208)
T cd03268 5 DLTKTYGKKRVLDD--ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP------DSGEITFDGKSYQKN-IEALRRIG 75 (208)
T ss_pred EEEEEECCeEeEee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC------CceEEEECCCcccch-HHHHhhEE
Confidence 34444433333333 5666799999999999999999999999998542 122233333332111 12235789
Q ss_pred eeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEE
Q psy6983 114 LTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 114 ~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
|++|++.+++..+...+.... ..... .....+.++++.+++. ....+.++|+++++ ++..|+++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~-~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLL-ARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred EecCCCccCccCcHHHHHHHH-HHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999997666544443332110 00011 1234567788888886 34446678888755 4579999999
Q ss_pred ecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 185 LDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+||+. |++ ..++++.++++.++++.
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 183 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISS 183 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 99987 333 34455556688887763
No 68
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.3e-18 Score=135.89 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=120.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+.++.|+...++-++ +++-..|+.+++.||||+|||||+|.|.-+. ...+.+...+ +...+--+....
T Consensus 6 ~~in~~yg~~q~lfdi--~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd----~s~~~~~k~i~~ 79 (242)
T COG4161 6 NGINCFYGAHQALFDI--TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD----FSKTPSDKAIRD 79 (242)
T ss_pred cccccccccchheeee--eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccc----cccCccHHHHHH
Confidence 4444555555555444 4445899999999999999999999997542 1222221111 111111234445
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh--hhhHHHHHHh-------hccC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN--ASRWSLTFQT-------MVQK 178 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~--~~~~s~~~~~-------~~~~ 178 (210)
.++++|||||.+.|+|+++++.+..+.+.++.+.+..+++..+.++|.+..+.++++ +-.+|++.++ ++..
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 668899999999999999999998888888888899999899999999999885554 3456776544 5679
Q ss_pred ccEEEEecCCC--CHHHH------HHhhhhcCceeEEe
Q psy6983 179 TMLEVHLDQPI--TPIKM------MERSIHSARFVLVI 208 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe~~------l~Ri~~R~r~~~~~ 208 (210)
|+.++|++++. |||+- ++-+..-|-+..|+
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~tgitqviv 197 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIV 197 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEE
Confidence 99999999987 77753 44455556555544
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.77 E-value=1.2e-18 Score=155.41 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=106.7
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++|+....+++ +|+++++||+++|+||||||||||+|+|+|+..+ ..|.+.++|.++.. ...+.++
T Consensus 6 ~~nls~~y~~~~vL~~--vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p------~sG~I~l~G~~i~~~~~~~~~~ 77 (402)
T PRK09536 6 VSDLSVEFGDTTVLDG--VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP------TAGTVLVAGDDVEALSARAASR 77 (402)
T ss_pred EeeEEEEECCEEEEEe--eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC------CCcEEEECCEEcCcCCHHHHhc
Confidence 4556666655444444 5566799999999999999999999999998542 12222222222111 0112236
Q ss_pred ceeeeehhhHhhh---HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccC
Q psy6983 111 RWSLTFQTMVQKT---MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 111 ~~~~vfQ~~~l~~---~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~ 178 (210)
++++++|++.++. ..+.+.....+....+.....++..++.++++.+|+.+ .....++|+++++ ++..
T Consensus 78 ~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 7999999976543 33433332211111112122345567889999999973 3446788888765 4689
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
|++++++||+. |+. .+++++.++++.++++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIiv 195 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAA 195 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 99999999987 443 4556666668887776
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-18 Score=144.49 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=102.3
Q ss_pred CCccccccCCCC--CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 32 FCFLCASQNHNS--TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 32 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+++++++... ....-.+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... +....
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~------~~~~~ 81 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL------SSAAK 81 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC------CHHHH
Confidence 345555554321 112223667779999999999999999999999999854 33333333211 00000
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
....++.++|+||++.+++.++...+.... .........+....+.++++.+|+.+ ...+.++|+++++ +
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMP-LLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 001125699999997665443333222110 00111122233456788899999862 3445678888755 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
+..|+++|++||+. |++ ..++++.+ +|+.++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57999999999987 333 44555554 488888874
No 71
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.77 E-value=8.8e-19 Score=152.85 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=107.0
Q ss_pred CCccccccCCC----CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----H
Q psy6983 32 FCFLCASQNHN----STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----A 103 (210)
Q Consensus 32 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~ 103 (210)
+.++++++... ..+++ +|+++++||+++|+|+||||||||+++|+|+.... ....|.+.++|.++. .
T Consensus 15 i~~l~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~---~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVND--LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN---GRIGGSATFNGREILNLPEK 89 (330)
T ss_pred EeCeEEEEecCCCCEEEEee--eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCCCeEEEECCEECCcCCHH
Confidence 45555555321 22333 66777999999999999999999999999986431 001233334443321 1
Q ss_pred HHHhc-ccceeeeehhh--HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-
Q psy6983 104 LMYEN-ASRWSLTFQTM--VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-----YENASRWSLTFQT- 174 (210)
Q Consensus 104 ~~~~~-~~~~~~vfQ~~--~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~- 174 (210)
...+. .+.++|+||++ .+++.++...+..+........+..+...++.++++.+|+.+ ...+.++|+++++
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 11111 24799999997 455554433322111111112234455567888999999862 1245688998865
Q ss_pred ------hccCccEEEEecCCC--CH------HHHHHhhhhc-CceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI--TP------IKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~~ 209 (210)
++..|+++|.+|++. |+ ..+++++.++ |..+++|-
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT 219 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 457999999999987 32 3456666654 88888763
No 72
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.77 E-value=6.9e-19 Score=148.06 Aligned_cols=176 Identities=17% Similarity=0.132 Sum_probs=106.1
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccc-cccC---cch
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWR-DVKG---HNL 101 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~-~~~~---~~~ 101 (210)
.+.++++.++....+++ +|+++++|++++|+|+||||||||+++|+|+.. +.+.++++.... .... .+
T Consensus 7 ~~~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~- 83 (257)
T PRK10619 7 NVIDLHKRYGEHEVLKG--VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD- 83 (257)
T ss_pred EEeeeEEEECCEEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc-
Confidence 34555555554333444 566679999999999999999999999999854 333333221000 0000 00
Q ss_pred HHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh---HHhhhhHHHHHHh----
Q psy6983 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM---YENASRWSLTFQT---- 174 (210)
Q Consensus 102 l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~---~~~~~~~s~~~~~---- 174 (210)
.......++.++|++|++.+++.++...+..............+....+.++++.+|+.. .....++|+++++
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 001112236799999998776544443332111111112222334456778899999863 2345678887754
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..++++.+.|+.++++.
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 209 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 209 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 333 35556666789988874
No 73
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=1.3e-18 Score=146.03 Aligned_cols=176 Identities=13% Similarity=0.037 Sum_probs=102.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCc--ch-HH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGH--NL-LA 103 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~--~~-l~ 103 (210)
+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|... +.+.++++..+....+. .. ..
T Consensus 3 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 3 FSDVTKRFGILTVLDG--LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEEEEEeCCeeEEee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 3445555543333333 566679999999999999999999999999854 33333333211000000 00 00
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
.....++.++|+||++.+++..+...+..............+....+.++++.+|+.. ...+.++|+++++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 0112236789999998766544443332110000011122233345778888888863 2345678887654
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ .+++++.+ +++.++++.
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 204 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 467999999999987 433 34555555 488888774
No 74
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=8.2e-19 Score=145.16 Aligned_cols=164 Identities=14% Similarity=-0.011 Sum_probs=100.1
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhc
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+++++++....+++ +|+++.+|++++|+||||||||||+++|+|... +.+.|+++.. .+ ... ..
T Consensus 5 ~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------~~-~~~--~~ 73 (232)
T cd03218 5 NLSKRYGKRKVVNG--VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK------LP-MHK--RA 73 (232)
T ss_pred EEEEEeCCEEeecc--ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc------CC-HhH--HH
Confidence 44444443333333 556679999999999999999999999999854 3333333221 00 011 11
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~P 179 (210)
++.++|++|++.+++.++...+.... .........+....+.++++.+|+. ......++|+++++ ++..|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAV-LEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 24689999998766544433322110 0011112223334567888888886 23445678887755 46799
Q ss_pred cEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 180 MLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++++++||+. |++. .++++.++++.++++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~s 190 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITD 190 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 9999999987 4443 4556666788887763
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=2.5e-18 Score=136.43 Aligned_cols=149 Identities=15% Similarity=0.047 Sum_probs=105.5
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHh
Q psy6983 47 RMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ 121 (210)
Q Consensus 47 ~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l 121 (210)
.+.+++++.+||++||+||||||||||+++++|+.. +.++|++..... ...+-++|+||+.+|
T Consensus 15 ~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~------------P~~RPVSmlFQEnNL 82 (231)
T COG3840 15 PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP------------PAERPVSMLFQENNL 82 (231)
T ss_pred eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC------------cccCChhhhhhcccc
Confidence 355778889999999999999999999999999853 455555544311 112668999999999
Q ss_pred hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhhc------cCccEEEEecCCC---C
Q psy6983 122 KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTMV------QKTMLEVHLDQPI---T 190 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~~------~~Pdl~I~Ld~~~---~ 190 (210)
|.++++..++-.+...-.. -..++++++..++.++|+. +.+-+.++|++.++++ -+..-++.||.|. +
T Consensus 83 FaHLtV~qNigLGl~P~Lk-L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 83 FAHLTVAQNIGLGLSPGLK-LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred chhhhhhhhhcccCCcccc-cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence 9999987776432222111 2356778899999999998 5556788999987753 3445556777765 5
Q ss_pred HHHH-------HHhhhhcCceeEEe
Q psy6983 191 PIKM-------MERSIHSARFVLVI 208 (210)
Q Consensus 191 pe~~-------l~Ri~~R~r~~~~~ 208 (210)
|-.. .+-..+|+.++++|
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmV 186 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMV 186 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEE
Confidence 5432 23446778877766
No 76
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.76 E-value=1.1e-18 Score=143.35 Aligned_cols=163 Identities=13% Similarity=-0.029 Sum_probs=96.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+.. +.+.+.++.. .+. ...
T Consensus 4 ~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~-~~~-- 72 (222)
T cd03224 4 ENLNAGYGKSQILFG--VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG------LPP-HER-- 72 (222)
T ss_pred eeEEeecCCeeEeee--eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCC------CCH-HHH--
Confidence 344444443333333 566779999999999999999999999999854 3333333221 010 111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHc-chh--hHHhhhhHHHHHHh-------hcc
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICS-QAL--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~-gl~--~~~~~~~~s~~~~~-------~~~ 177 (210)
.++.++|+||++.+++.++...+..... .... ..+....+.++++.+ ++. ......++|+++++ ++.
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~-~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGA-YARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHh-hhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 1256899999987665544433321110 0111 112233455666666 343 23335578877654 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|++++++||+. |++ .+++++.++++.++++.
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 189 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVE 189 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 999999999987 332 45555556778888763
No 77
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=9.5e-19 Score=143.88 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=94.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+||||||||||+++|+|+..+ ..|.+.++|.++. ..++.++|++|++.+++..+...
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP------TSGEVLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEECc----cccCcEEEEecccccccCCCHHH
Confidence 5677799999999999999999999999998542 1222333333221 11357899999986654333322
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... .........+....+.++++.+|+.+ ...+.++|+++++ ++..|+++|++||+. |++
T Consensus 93 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~ 171 (220)
T cd03293 93 NVALG-LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171 (220)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH
Confidence 22110 00111122233356778899999873 3345678888754 467999999999987 443
Q ss_pred HHHHhhhh-cCceeEEee
Q psy6983 193 KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~-R~r~~~~~~ 209 (210)
..++++.+ +++.++++.
T Consensus 172 ~~l~~~~~~~~~tiii~s 189 (220)
T cd03293 172 EELLDIWRETGKTVLLVT 189 (220)
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 33445433 488888874
No 78
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.76 E-value=9.2e-19 Score=148.45 Aligned_cols=171 Identities=14% Similarity=0.026 Sum_probs=102.0
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMY 106 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~ 106 (210)
.+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++. ....
T Consensus 9 ~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 9 DMRGVSFTRGNRCIFDN--ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP------DHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred EEeCeEEEECCEEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEECCEEccccChhhHH
Confidence 34555555554333333 5677799999999999999999999999998542 1222222222210 1111
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hcc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~ 177 (210)
..++.++|+||++.+++.++...+..............+....+.++++.+|+.. ...+.++|+++++ ++.
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1235689999998665443333222110000001112223345677888888862 3345678888755 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
.|+++|++||+. |++ .+++++.++ |+.++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs 201 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS 201 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 999999999987 443 344555444 78888874
No 79
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.9e-18 Score=147.39 Aligned_cols=166 Identities=14% Similarity=0.027 Sum_probs=103.8
Q ss_pred CCCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 31 PFCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 31 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.+++++++.. ..+++ +|+++++|++++|+||||||||||+++|+|... +.+.|+++... +
T Consensus 7 ~~~~l~~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~------~--- 75 (279)
T PRK13635 7 RVEHISFRYPDAATYALKD--VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE------T--- 75 (279)
T ss_pred EEEEEEEEeCCCCccceee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC------c---
Confidence 345566556432 23334 566679999999999999999999999999854 33333333210 0
Q ss_pred HHHhcccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh------
Q psy6983 104 LMYENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT------ 174 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~------ 174 (210)
....++.++|+||++. ++...+...+.... ......+..+....+.++++.+|+. ....+.++|+++++
T Consensus 76 -~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 76 -VWDVRRQVGMVFQNPDNQFVGATVQDDVAFG-LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred -HHHHhhheEEEEeCHHHhcccccHHHHHhhh-HhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence 1112357999999973 33333333332111 1111123334445678889998987 33345678888755
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++..|+++|.+||+. |+. .++.++.++ |+.++++.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivs 198 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSIT 198 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 467999999999987 333 445566654 88888874
No 80
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=1.5e-18 Score=141.58 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=93.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHh-hhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQ-KTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l-~~~~~~ 127 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....++.++|++|++.+ ++..+.
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP------TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 5666799999999999999999999999998542 11222222222100 001112568999999632 322233
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH----
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI---- 192 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe---- 192 (210)
..+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|+++|++||+. |++
T Consensus 94 ~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 94 EEEVAFG-LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2222110 00111122233346778888888863 3345678888755 467999999999987 443
Q ss_pred --HHHHhhhhcCceeEEee
Q psy6983 193 --KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 --~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 173 ~~~~l~~~~~~~~tvi~~s 191 (211)
T cd03225 173 LLELLKKLKAEGKTIIIVT 191 (211)
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 44556666688888774
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=144.85 Aligned_cols=169 Identities=16% Similarity=0.085 Sum_probs=99.9
Q ss_pred CccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHHh
Q psy6983 33 CFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMYE 107 (210)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~ 107 (210)
.+++++++. ....++ +|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++.. ....
T Consensus 4 ~~l~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 4 ENLSKTYPNGKKALKD--VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP------TSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred eeEEEecCCccEEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC------CCceEEECCEeccccCHhHHHH
Confidence 444555543 223333 5666799999999999999999999999998542 11222222222110 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcc-------cccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh----
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPI-------KMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT---- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-------~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~---- 174 (210)
.++.++|++|++.+++.++...+...... .+......+....+.++++.+|+.. .....++|+++++
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 23578999999866554333332211000 0011111233356778888888863 2345678888755
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. ..+.++.+ +|+.++++.
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 202 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 333 33455544 488888774
No 82
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.6e-18 Score=143.65 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=95.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++.+|++++|+||||||||||+++|+|+.. +.+.++++... + .......++.++|++|++.+++.
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------~-~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL------S-GKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC------C-HHHHHHHHhheEEEccCcccCCC
Confidence 567779999999999999999999999999854 33333332210 0 01111123578999999876654
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
++...+.... .........+....+.++++.+|+.+ .....++|+++++ ++..|+++|++||+. |+.
T Consensus 97 ~t~~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (233)
T cd03258 97 RTVFENVALP-LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPET 175 (233)
T ss_pred CcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHH
Confidence 4433332110 00111122233345778899999873 3345678887754 467999999999987 433
Q ss_pred -----HHHHhhhhc-CceeEEee
Q psy6983 193 -----KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R-~r~~~~~~ 209 (210)
..+.++.++ |+.++++.
T Consensus 176 ~~~l~~~l~~~~~~~~~tvii~s 198 (233)
T cd03258 176 TQSILALLRDINRELGLTIVLIT 198 (233)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEe
Confidence 334444443 88888874
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=147.44 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=102.8
Q ss_pred CCccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
+.+++++++. ...+++ +|+++.+|++++|+|+||||||||+++|+|+.. +.+.|+++.. .+ ..
T Consensus 7 ~~~l~~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------~~-~~-- 75 (274)
T PRK13647 7 VEDLHFRYKDGTKALKG--LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA------EN-EK-- 75 (274)
T ss_pred EEEEEEEeCCCCeeeee--EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC------CC-HH--
Confidence 4555555542 233444 556679999999999999999999999999854 3333433321 01 11
Q ss_pred HhcccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 106 YENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++. .+...+...+.... ....+....+....+.++++.+|+. ....+.++|+++++ +
T Consensus 76 -~~~~~i~~v~q~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 76 -WVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred -HHHhhEEEEecChhhhhccCcHHHHHHhh-HHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 11256999999863 22222333322111 0111122233345678889999986 23345678888754 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|++++++||+. |+. .++.++.++|++++++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~t 195 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVAT 195 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 68999999999987 333 55667766788888874
No 84
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=1.1e-18 Score=142.15 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=93.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+|+||||||||+++|+|..... .|.+.++|.+.........++++|++|++.+++.++...
T Consensus 20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~------~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD------AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence 56667999999999999999999999999985421 222222222211101112256899999876654333333
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... ..... . .....+.++++.+|+.. .....++|+++++ ++..|++++++||+. |++
T Consensus 94 ~l~~~-~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 169 (204)
T PRK13538 94 NLRFY-QRLHG--P-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169 (204)
T ss_pred HHHHH-HHhcC--c-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 32110 01111 0 22345678899999862 3345678887654 567999999999987 333
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.+++++++++.
T Consensus 170 ~~l~~~~~~~~tiii~s 186 (204)
T PRK13538 170 ALLAQHAEQGGMVILTT 186 (204)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 34455555678888764
No 85
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.9e-18 Score=142.86 Aligned_cols=166 Identities=15% Similarity=-0.005 Sum_probs=102.5
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.++++.. .+...
T Consensus 6 ~~~l~~~~~~~~~l~~--~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------~~~~~--- 74 (241)
T PRK10895 6 AKNLAKAYKGRRVVED--VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL------LPLHA--- 74 (241)
T ss_pred EeCcEEEeCCEEEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC------CCHHH---
Confidence 3445555543223333 566779999999999999999999999999853 3333333221 01011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccc-ccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMM-ERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~-~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
..++.++|++|++.+++.++...+.... .... .....+....+.++++.+|+.. .....++|+++++ ++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAV-LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhh-hhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 1125689999998766544443333211 1111 1122233456778888888863 3445678887754 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
..|++++++||+. |++ .+++++.++|+.++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~s 194 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 7999999999987 333 34456666788888774
No 86
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.1e-18 Score=147.04 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred CCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
+.+++++|+... ....-.+|+++++|++++|+|+||||||||+++|+|+.. +.+.|+++.. .+ ..
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~------~~-~~-- 77 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE------EN-VW-- 77 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc------Cc-HH--
Confidence 445555554321 112233567779999999999999999999999999853 3333433321 00 11
Q ss_pred HhcccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 106 YENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++. ++...+...+.... ....+.+..+...++.++++.+|+.. ...+.++|+++++ +
T Consensus 78 -~~~~~i~~v~q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral 155 (279)
T PRK13650 78 -DIRHKIGMVFQNPDNQFVGATVEDDVAFG-LENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155 (279)
T ss_pred -HHHhhceEEEcChHHhcccccHHHHHHhh-HHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12357899999973 44333333332111 11112233444456788999999973 3345678887754 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|+++|.+||+. |+. .++.++.++ |++++++.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivt 198 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISIT 198 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67999999999987 443 455566654 88888874
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=3.5e-18 Score=139.04 Aligned_cols=147 Identities=13% Similarity=0.020 Sum_probs=92.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhH-hhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV-QKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~-l~~~~~~~ 128 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. ...++.++|++|++. .+...+..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~--~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE------SSGSILLNGKPIKA--KERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC------CceEEEECCEEhhh--HHhhcceEEEecChhhhhhhccHH
Confidence 5666799999999999999999999999998542 22333333333211 122357999999963 12222333
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-----
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI----- 192 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe----- 192 (210)
.+.... ... .. +....+.++++.+|+.+ ...+.++|+++++ ++..|++++.+||+. |++
T Consensus 91 e~l~~~-~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 165 (205)
T cd03226 91 EELLLG-LKE--LD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165 (205)
T ss_pred HHHhhh-hhh--cC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH
Confidence 332111 000 11 12245778899999873 3345678888755 467999999999987 333
Q ss_pred -HHHHhhhhcCceeEEee
Q psy6983 193 -KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 -~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 166 ~~~l~~~~~~~~tii~~s 183 (205)
T cd03226 166 GELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 44555555688888763
No 88
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-18 Score=145.16 Aligned_cols=169 Identities=12% Similarity=-0.031 Sum_probs=100.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++|+.....++ +|+++.+|++++|+||||||||||+++|+|+.... .|.+.++|.++... ....+.
T Consensus 5 ~~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~G~i~~~g~~~~~~-~~~~~~ 75 (239)
T cd03296 5 VRNVSKRFGDFVALDD--VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD------SGTILFGGEDATDV-PVQERN 75 (239)
T ss_pred EEeEEEEECCEEeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEECCcC-Cccccc
Confidence 3445555544333333 56667999999999999999999999999985421 11222222211000 011256
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcc--ccccc-chhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCc
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPI--KMMER-SIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~--~~~~~-s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~P 179 (210)
++|++|++.+++..+...+...... ....+ ...+....+.++++.+|+.. ...+.++|+++++ ++..|
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 8999999876544343333211100 00000 12223345678889898862 3345678888755 46799
Q ss_pred cEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 180 MLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++++++||+. |++ .+++++.++ ++.++++.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 194 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999987 443 345555554 78888774
No 89
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.4e-18 Score=144.89 Aligned_cols=168 Identities=13% Similarity=0.022 Sum_probs=100.6
Q ss_pred CccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 33 CFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
.+++++++. ....++ +|+++.+|++++|+||||||||||+++|+|.... ..|.+.++|.++.. .....++
T Consensus 4 ~~l~~~~~~~~~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 4 ENVTKRYGGGKKAVNN--LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP------TSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred EEEEEEeCCcceEeee--eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCeEcCcCChHHhhc
Confidence 344444443 223333 5666799999999999999999999999998542 12222222222110 0011135
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh----HHhhhhHHHHHHh-------hccCc
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM----YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~----~~~~~~~s~~~~~-------~~~~P 179 (210)
.++|++|++.+++..+...+.... .........+....+.++++.+|+.. .....++|+++++ ++..|
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALV-PKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 789999998766544433332110 01111222333456778899888862 2335678887754 46799
Q ss_pred cEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 180 MLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++++.+||+. |++ .+++++.+ +|+.++++.
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999987 333 23455544 388888763
No 90
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.76 E-value=1.9e-18 Score=141.97 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=93.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHhc-ccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYEN-ASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~~-~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|.... ..|.+.++|.++. ...... .+.++|++|++.+++.
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 6677799999999999999999999999998542 1222222222211 111111 2568999999876644
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
++...+.... .........+....+.++++.+|+.. .....++|+++++ ++..|+++|++||+. |++
T Consensus 98 ~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 98 FTALENVAMP-LLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 3333332110 00111122233445778889888862 3345678888755 467999999999987 332
Q ss_pred -----HHHHhhhh-cCceeEEee
Q psy6983 193 -----KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~-R~r~~~~~~ 209 (210)
.++.++.+ +++.++++.
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 177 AKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 34444444 478888764
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.1e-18 Score=146.31 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=110.1
Q ss_pred ccccccccccc---cccc--cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cc
Q psy6983 15 ALFKCFPSQLH---ILLS--VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----IT 84 (210)
Q Consensus 15 ~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~ 84 (210)
++.++|+++.. ..++ ..+.++..+++....++++ |+++.+|++++|+||||||||||+++|+|+.. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i--s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 82 (269)
T cd03294 5 GLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDV--SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82 (269)
T ss_pred cchhhcCCchhHHHHHHhhhhhhhhhhhhcCCceEeeee--EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 45677766422 1111 1234555556655555554 56669999999999999999999999999864 23
Q ss_pred eeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--H
Q psy6983 85 AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--Y 162 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~ 162 (210)
+.|+++... +.........+.++|++|++.+++.++...+.... .........+....+.++++.+|+.+ .
T Consensus 83 i~g~~~~~~------~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 155 (269)
T cd03294 83 IDGQDIAAM------SRKELRELRRKKISMVFQSFALLPHRTVLENVAFG-LEVQGVPRAEREERAAEALELVGLEGWEH 155 (269)
T ss_pred ECCEEcccc------ChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCHhHhh
Confidence 333332210 00000001124689999998766444433332110 00111122233346778899999873 3
Q ss_pred HhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 163 ENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 163 ~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
..+.++|+++++ ++..|+++|++||+. |++ .++.++.++ |+.++++.
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t 218 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 335678888755 467999999999987 443 345555443 78888764
No 92
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2e-18 Score=146.49 Aligned_cols=165 Identities=11% Similarity=-0.012 Sum_probs=98.5
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--H-HHHhcc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--A-LMYENA 109 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~-~~~~~~ 109 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++. . .....+
T Consensus 5 ~~l~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 5 SDLWFRYQDEPVLKG--LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP------QKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred EEEEEEcCCcccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC------CccEEEECCEEcccccCCHHHHH
Confidence 445555544333444 4566699999999999999999999999998542 1122222222210 0 001122
Q ss_pred cceeeeehhhHh--h--hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 110 SRWSLTFQTMVQ--K--TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 110 ~~~~~vfQ~~~l--~--~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
+.++|++|++.+ + +..+.+... ....+....+....+.++++.+|+.. .....++|+++++ ++
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFS----LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHH----HHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 568999998642 2 112222111 00111122233345677888888863 3345678888755 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
..|+++|++||+. |++ ..+.++.++|+.++++.
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vt 193 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 7999999999987 333 45556666688888764
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.2e-18 Score=145.17 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=99.3
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. ....+
T Consensus 5 ~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~----~~~~~ 72 (255)
T PRK11248 5 SHLYADYGGKPALED--INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY------QHGSITLDGKPVEG----PGAER 72 (255)
T ss_pred EEEEEEeCCeeeEee--eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEECCC----CCCcE
Confidence 334444443223333 5667799999999999999999999999998542 12222222222110 11357
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|++|++.+++..+...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|+++|
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFG-LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999997665543333332110 01111122333456788899999873 3446778888755 467999999
Q ss_pred EecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 184 HLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++||+. |++ ..++++.+ +|+.++++.
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs 186 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999987 333 33444433 478888764
No 94
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=137.80 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=110.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
+..+.+|+.......-.+|+++.+|++++++||||||||||+++++|+.. +..++.++.+. |
T Consensus 7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP----g--------- 73 (259)
T COG4525 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP----G--------- 73 (259)
T ss_pred hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC----C---------
Confidence 33444455443222233566679999999999999999999999999853 44555555431 0
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh-------ccC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM-------VQK 178 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~-------~~~ 178 (210)
.+-|.|||+..|+|-++.+.+...+ .......+.+.+.++.+++..+|+. +.+..-++|++|+++ +..
T Consensus 74 --aergvVFQ~~~LlPWl~~~dNvafg-L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 74 --AERGVVFQNEALLPWLNVIDNVAFG-LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred --ccceeEeccCccchhhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcC
Confidence 2339999999999988888776432 3444567778888999999999998 444455789988764 569
Q ss_pred ccEEEEecCCC-----CHHH----HHHhhhhcCceeEEe
Q psy6983 179 TMLEVHLDQPI-----TPIK----MMERSIHSARFVLVI 208 (210)
Q Consensus 179 Pdl~I~Ld~~~-----~pe~----~l~Ri~~R~r~~~~~ 208 (210)
||+++.+|+-. +.|. ++.--.++|+.+|+|
T Consensus 151 P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli 189 (259)
T COG4525 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 (259)
T ss_pred cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 99977666643 2222 233335677777776
No 95
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.75 E-value=9.8e-19 Score=150.66 Aligned_cols=167 Identities=10% Similarity=-0.025 Sum_probs=102.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.+........++.
T Consensus 5 ~~~l~~~~~~~~~l~~--is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~------~~G~i~i~g~~~~~~~~~~~~~ 76 (301)
T TIGR03522 5 VSSLTKLYGTQNALDE--VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP------DSGSVQVCGEDVLQNPKEVQRN 76 (301)
T ss_pred EEEEEEEECCEEEEEE--eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEEcccChHHHHhc
Confidence 3444555543333334 5566799999999999999999999999998542 1222223332221111122367
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEE
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLE 182 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~ 182 (210)
++|++|++.+++.++...+... .....+.+..+....+.++++.+|+.. ......+|+++++ ++..|+++
T Consensus 77 ig~~~q~~~l~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 77 IGYLPEHNPLYLDMYVREYLQF-IAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred eEEecCCCCCCCCCcHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999876654443333211 011112222333456788899999873 3345678888754 46899999
Q ss_pred EEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 183 VHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 183 I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
|++||+. ||+ ..++++. +++.++++
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~ 188 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILS 188 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 9999987 544 4556664 36776665
No 96
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=138.67 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=107.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+||+.++|++++|.|||||||||++|+|+.++.+. .+...++|.+...+...-++++|..|-.-.++.+++...
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~------~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD------SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC------CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 45667999999999999999999999999986432 122222222222222233478999996666777777655
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHH-------HhhccCccEEEEecCCC--------CHH
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTF-------QTMVQKTMLEVHLDQPI--------TPI 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~-------~~~~~~Pdl~I~Ld~~~--------~pe 192 (210)
+... ...+.+.+..+...+.+++.+.+++. ....+..+|.++ ++++..|+++|++||+. ...
T Consensus 95 nl~~-Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 95 NLKY-FARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred HHHH-HHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 5422 13445666777777889999999988 445566777776 44678999999999987 556
Q ss_pred HHHHhhhhcCceeEE
Q psy6983 193 KMMERSIHSARFVLV 207 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~ 207 (210)
..+.+++..||.|+.
T Consensus 174 dfi~q~k~egr~viF 188 (245)
T COG4555 174 DFIKQLKNEGRAVIF 188 (245)
T ss_pred HHHHHhhcCCcEEEE
Confidence 778888888998874
No 97
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.75 E-value=4.2e-18 Score=140.66 Aligned_cols=170 Identities=13% Similarity=0.049 Sum_probs=101.7
Q ss_pred CCccccccCCCCC--CccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 32 FCFLCASQNHNST--GKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 32 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+++++++.... ...-.+|+++++|++++|+||||||||||+++|+|+.. +.+.|+++... + ...
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~------~-~~~ 81 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM------D-EEA 81 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccC------C-HHH
Confidence 4555555543211 12223667779999999999999999999999999854 33333332210 0 011
Q ss_pred HH-hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 105 MY-ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 105 ~~-~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
.. ...+.++|++|++.+++.++...+.... .........+....+.++++.+++.. ...+.++|+++++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELP-ALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 11 1124689999998765543333332110 00111122333456788899999873 3345678887754
Q ss_pred hccCccEEEEecCCC--C---HHHHHH---hhhh-cCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--T---PIKMME---RSIH-SARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~---pe~~l~---Ri~~-R~r~~~~~~ 209 (210)
++..|+++|++||+. | .+.+.+ ++.+ +++.++++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 3 334434 4433 378888774
No 98
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.75 E-value=3.3e-18 Score=152.51 Aligned_cols=166 Identities=13% Similarity=0.043 Sum_probs=114.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+.+.+|+...+.++ +|+++++||+.||+|+||||||||+++|.|.++ +.++|+++.- .+..+ .
T Consensus 8 ~~itK~f~~~~And~--V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~------~sP~d---A 76 (501)
T COG3845 8 RGITKRFPGVVANDD--VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRI------KSPRD---A 76 (501)
T ss_pred eccEEEcCCEEecCc--eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEecc------CCHHH---H
Confidence 334444443333334 455569999999999999999999999999864 4555555431 11112 2
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcc--cccccchhhhHHHHHHHHHHcchh-h-HHhhhhHH-------HHHHhhc
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPI--KMMERSIHSARWELTQCQICSQAL-M-YENASRWS-------LTFQTMV 176 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~--~~~~~s~~e~~~~~~~~L~~~gl~-~-~~~~~~~s-------~~~~~~~ 176 (210)
.+..||||+|++.|.+.+++..++....- ..........+.++.++.++.|+. + .+...++| ..++.++
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 23679999999999988888777643321 112234456677889999999997 2 33333444 4455567
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
..++++|++|||. +|+ ..++++++.|..|++|-
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~IT 197 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFIT 197 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 8999999999997 444 35778999999999873
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.9e-18 Score=141.12 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=97.8
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccccee
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWS 113 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (210)
+++++++.....++ +|+++++| +++|+||||||||||+++|+|+... ..|.+.++|.++.......++.++
T Consensus 5 ~~~~~~~~~~~l~~--vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 5 NLTKRYGKKRALDG--VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP------SSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred EEEEEECCEEEEcc--eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC------CccEEEECCCccccchHHHHhheE
Confidence 33444433323334 45666889 9999999999999999999998542 122222233222110012236789
Q ss_pred eeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEE
Q psy6983 114 LTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 114 ~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
|++|++.+++.++...+.... ....+....+....+.++++.+|+.. ...+.++|+++++ ++..|+++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYI-AWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred EecCCCcccccCCHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998765543333222100 00111122233456778889888873 3345678888754 4679999999
Q ss_pred ecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 185 LDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+||+. |+. ..++++.+ +..++++.
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vs 186 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGE-DRIVILST 186 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEc
Confidence 99987 443 45556654 47777663
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.75 E-value=1.5e-18 Score=144.26 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=92.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+|++++|+||||||||||+++|+|+..+. .|.+.++|.++........+.++|++|++.+++..+...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~------~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ------EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC------ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 56667999999999999999999999999985421 122222222210000011246899999976544333322
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... ....+....+....+.++++.+|+.. .....++|+++++ ++..|+++|++||+. |++
T Consensus 94 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 94 NLRYH-AALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 22100 01111122233345778888888862 3345678887754 467999999999987 333
Q ss_pred HHHHhhhh-cCceeEEee
Q psy6983 193 KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~-R~r~~~~~~ 209 (210)
..+.++.+ +|+.++++.
T Consensus 173 ~~l~~~~~~~~~tiii~s 190 (236)
T TIGR03864 173 AHVRALCRDQGLSVLWAT 190 (236)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 44555553 578887763
No 101
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.6e-18 Score=140.35 Aligned_cols=153 Identities=13% Similarity=0.018 Sum_probs=96.0
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++.+|++++|+||||||||||+++|+|+.+.. .|.+.++|.++... ...++.++|++|++.+++.++..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~------~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~ 88 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ------SGRVLINGVDVTAA-PPADRPVSMLFQENNLFAHLTVE 88 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEEcCcC-CHhHccEEEEecccccCCCCcHH
Confidence 677888999999999999999999999999985421 12222222211000 01125699999998766544443
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-----
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI----- 192 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe----- 192 (210)
.+.......... ...+....+.++++.+|+.. ...+.++|+++++ ++..|+++|++||+. |++
T Consensus 89 enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l 167 (211)
T cd03298 89 QNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167 (211)
T ss_pred HHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 333211110001 11123346788899998862 3345678888755 467999999999987 333
Q ss_pred -HHHHhhhh-cCceeEEee
Q psy6983 193 -KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -~~l~Ri~~-R~r~~~~~~ 209 (210)
..++++.+ +++.++++.
T Consensus 168 ~~~l~~~~~~~~~tii~~s 186 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVT 186 (211)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 44555544 488888874
No 102
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.75 E-value=2.6e-18 Score=139.17 Aligned_cols=163 Identities=13% Similarity=-0.022 Sum_probs=97.4
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccccee
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWS 113 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (210)
+++++++....+++ +|+++.+|++++|+||||||||||+++|+|..... .+.+.++|.+........++.++
T Consensus 5 ~l~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~i~ 76 (198)
T TIGR01189 5 NLACSRGERMLFEG--LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD------SGEVRWNGTALAEQRDEPHRNIL 76 (198)
T ss_pred EEEEEECCEEEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC------ccEEEECCEEcccchHHhhhheE
Confidence 34444443333333 56667999999999999999999999999986421 22222222221110011235789
Q ss_pred eeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEE
Q psy6983 114 LTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 114 ~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
|++|++.+++..+...+.... ..... .+ ...+.++++.+|+.+ .....++|+++++ ++..|+++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~-~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 151 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFW-AAIHG---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWIL 151 (198)
T ss_pred EeccCcccccCCcHHHHHHHH-HHHcC---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987665433333222100 00011 11 234677888888863 2345678877654 4679999999
Q ss_pred ecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 185 LDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
+||+. ....+++++.++++.++++.
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 184 (198)
T TIGR01189 152 DEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184 (198)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 99987 23345555556688888774
No 103
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.3e-18 Score=146.51 Aligned_cols=153 Identities=15% Similarity=0.018 Sum_probs=98.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQ 121 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l 121 (210)
.+|+++.+|++++|+|+||||||||+++|+|+.. +.+.|.++.... ........++.++|+||++ .+
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS------KQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccc------ccccHHHHHhhEEEEecCcchhc
Confidence 3667779999999999999999999999999854 344444432100 0001112236799999986 34
Q ss_pred hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 122 KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
++ .+...+.... ......+..+...++.++++.+|+. . ...+..+|+++++ ++..|+++|++||+.
T Consensus 98 ~~-~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL 175 (288)
T PRK13643 98 FE-ETVLKDVAFG-PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred cc-chHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 33 2333332111 1111223344455788899999985 2 3445678888755 467999999999987
Q ss_pred CHH------HHHHhhhhcCceeEEee
Q psy6983 190 TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 190 ~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+. ..+++++++|++++++.
T Consensus 176 D~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 176 DPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 333 45666777789988874
No 104
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.75 E-value=3.2e-18 Score=139.10 Aligned_cols=147 Identities=16% Similarity=-0.014 Sum_probs=91.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+|+||||||||+++|+|+.... .|.+.++|.+........++.++|++|++.+++..+...
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL------AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 55667999999999999999999999999986421 111222222211000122367899999876654433333
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--------CHH
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--------TPI 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--------~pe 192 (210)
+..... . . . ....+.++++.+|+.. .....++|+++++ ++..|+++|.+||+. ...
T Consensus 93 ~l~~~~-~--~---~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 165 (201)
T cd03231 93 NLRFWH-A--D---H-SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA 165 (201)
T ss_pred HHHhhc-c--c---c-cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 321100 0 0 1 2345678888888863 3335677877654 467999999999987 223
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
.++.++.+.++.++++.
T Consensus 166 ~~l~~~~~~g~tiii~s 182 (201)
T cd03231 166 EAMAGHCARGGMVVLTT 182 (201)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 34445555688888763
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=2.3e-18 Score=141.00 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=107.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.++++.|+....++++ |+++++||+++|+|+||+|||||+|+|+|+.+ +.+.|+++++. +...
T Consensus 6 v~~l~~~YG~~~~L~gv--sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~---------p~~~ 74 (237)
T COG0410 6 VENLSAGYGKIQALRGV--SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL---------PPHE 74 (237)
T ss_pred EEeEeecccceeEEeee--eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC---------CHHH
Confidence 45666677776666665 55569999999999999999999999999854 55556665542 2233
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccc-cc----hhhhHHHHHHHHHHcchhhHHhhhhHHHHHHh-------
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMME-RS----IHSARWELTQCQICSQALMYENASRWSLTFQT------- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~-~s----~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~------- 174 (210)
..+..++||+|--..|+.+++..+...+.....+ .. .++..+.|-.+-++ ....-..+|++.|+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker----~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER----RNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHH----hcCcccCCChHHHHHHHHHHH
Confidence 4457799999999899998887776432111111 10 11111122222211 11223467777665
Q ss_pred hccCccEEEEecCCC--------CHHHHHHhhhhc-CceeEEeeC
Q psy6983 175 MVQKTMLEVHLDQPI--------TPIKMMERSIHS-ARFVLVIEK 210 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R-~r~~~~~~~ 210 (210)
++.+|.+++++||+. +--..+++++++ +-+|++||.
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQ 195 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 468999999999986 444567788866 669999983
No 106
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.6e-18 Score=140.94 Aligned_cols=166 Identities=13% Similarity=0.027 Sum_probs=101.7
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++++.. ...+|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++... ....+.
T Consensus 4 ~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~-~~~~~~ 72 (232)
T PRK10771 4 LTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP------ASGSLTLNGQDHTTT-PPSRRP 72 (232)
T ss_pred EEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEECCeecCcC-Chhhcc
Confidence 34455555431 1257788899999999999999999999999998542 122222222221100 011256
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEE
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLE 182 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~ 182 (210)
++|++|++.+++.++...+.......... ........+.++++.+|+.. ...+.++|+++++ ++..|+++
T Consensus 73 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred EEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998766544444333211000011 11223346788899999873 3345578887654 56799999
Q ss_pred EEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 183 VHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 183 I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
|++||+. |++ ..++++.+ +|+.++++.
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s 187 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9999987 554 44555544 478888874
No 107
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.6e-18 Score=148.99 Aligned_cols=158 Identities=10% Similarity=-0.058 Sum_probs=98.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHh-cccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYE-NASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~-~~~~~~~vfQ~~~--l~ 122 (210)
+|+++.+||+++|+|+||||||||+++|+|+.... +.+..|.+.++|.++. ..... ..+.++|+||++. ++
T Consensus 26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~--~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 103 (330)
T PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN--WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC--CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcC
Confidence 66777999999999999999999999999986411 1122233333343321 11111 1246999999974 45
Q ss_pred hHHHHHHcCCCCccc--ccc---cchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-------hccCccEEEEe
Q psy6983 123 TMLEVHLDQPITPIK--MME---RSIHSARWELTQCQICSQALM-----YENASRWSLTFQT-------MVQKTMLEVHL 185 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~--~~~---~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~-------~~~~Pdl~I~L 185 (210)
+.+++..+....... ... ....+.+..+.++|+.+|+.+ ...+.++|+++++ ++..|+++|++
T Consensus 104 p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 183 (330)
T PRK15093 104 PSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred ccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 554433332110000 000 011233456889999999962 2345689998866 45799999999
Q ss_pred cCCC--------CHHHHHHhhhh-cCceeEEee
Q psy6983 186 DQPI--------TPIKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 186 d~~~--------~pe~~l~Ri~~-R~r~~~~~~ 209 (210)
|++. ....++.++.+ +|..+++|.
T Consensus 184 EPts~LD~~~~~~i~~lL~~l~~~~g~tii~it 216 (330)
T PRK15093 184 EPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS 216 (330)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9987 33345556655 488888874
No 108
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.7e-18 Score=145.14 Aligned_cols=174 Identities=14% Similarity=0.031 Sum_probs=101.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++++.......-.+|+++.+|++++|+||||||||||+++|+|+...... ..|.+.++|.++.. .....++
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g---~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN---PNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCC---CCcEEEECCEECCcCCHHHHHh
Confidence 4455555543211122336677799999999999999999999999998543210 00112222222110 0111235
Q ss_pred ceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 111 RWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 111 ~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
.++|+||++. +++..+...+.... ......+..+..+++.++++.+|+.. ...+.++|+++++ ++..|+
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFG-LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhh-HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899999973 33333333332111 11112233344456788899999873 3335678887654 468999
Q ss_pred EEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++|.+|++. |+. .+++++.++ |+.++++.
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999987 333 344555543 78888764
No 109
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.74 E-value=4e-18 Score=142.55 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=100.3
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhcc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYENA 109 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~ 109 (210)
.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|....... ....|.+.++|.++.. .....+
T Consensus 5 ~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 5 ENLNLFYGEKEALKN--INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPG-VRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEECCeeeecc--eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcC-CCCceEEEECCEEccccccchHHHH
Confidence 344444543333333 5666799999999999999999999999998643200 0012333333333211 011223
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh-------h
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMME-RSIHSARWELTQCQICSQAL----M--YENASRWSLTFQT-------M 175 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~-------~ 175 (210)
+.++|+||++.+++ .+...+.... ..... .+..+....+.++++.+|+. . .....++|+++++ +
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYG-PRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 67999999986665 4433332110 01111 12233345677888888885 2 2234578887754 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|++++.+||+. |+. .++.++.+ ++.++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivs 200 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVT 200 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEe
Confidence 67999999999987 443 34555544 36777663
No 110
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.7e-18 Score=146.72 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=107.8
Q ss_pred cCCCccccccCCC-----CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeecccccccc----
Q psy6983 30 VPFCFLCASQNHN-----STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRD---- 95 (210)
Q Consensus 30 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~---- 95 (210)
+.+.+++++|+.. ..+++ +|+++++|++++|+|+||||||||+++|+|+.. +.+.|.++.....
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNN--ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred EEEEeEEEEeCCCCcccccceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4467777777542 23333 566679999999999999999999999999853 4444444321100
Q ss_pred -cc--CcchHHHHHhcccceeeeehhh--HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhh
Q psy6983 96 -VK--GHNLLALMYENASRWSLTFQTM--VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASR 167 (210)
Q Consensus 96 -~~--~~~~l~~~~~~~~~~~~vfQ~~--~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~ 167 (210)
.. ... .......++.++|+||++ .+++. +...+...... ..+.+..+...++.++++.+|+. . .....+
T Consensus 100 ~~~~~~~~-~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 100 ITNPYSKK-IKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPV-ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred cccccccc-cchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHH-hcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 00 000 001122336799999986 34432 33333211111 11223344555778899999985 2 333567
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+|+++++ ++..|+++|++|++. |+. .++.++.++|++++++.
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiivt 233 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 8888755 467999999999987 333 44556666789998874
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.5e-18 Score=143.31 Aligned_cols=153 Identities=13% Similarity=-0.023 Sum_probs=95.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhcccceeeeehhhHh-hhHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENASRWSLTFQTMVQ-KTMLE 126 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~vfQ~~~l-~~~~~ 126 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++. ......++.++|++|++.. +...+
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP------QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 5566799999999999999999999999998542 1222223332221 0011123578999999642 22233
Q ss_pred HHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH---
Q psy6983 127 VHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI--- 192 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe--- 192 (210)
...+..... .....+..+....+.++++.+|+.. .....++|+++++ ++..|++++.+||+. |+.
T Consensus 95 v~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 95 VEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred HHHHHHhhH-HHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 333321111 1111223334456778889999873 2335678887754 467999999999987 444
Q ss_pred ---HHHHhhhhcCceeEEee
Q psy6983 193 ---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ---~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++|+.++++.
T Consensus 174 ~l~~~l~~l~~~g~til~~t 193 (274)
T PRK13644 174 AVLERIKKLHEKGKTIVYIT 193 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 35666666788888873
No 112
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.74 E-value=2.6e-18 Score=151.18 Aligned_cols=152 Identities=14% Similarity=0.023 Sum_probs=98.7
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|+++++|++++|+||||||||||+++|+|+.. +.+.++++.... ... .....++.++|+||++.+++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~----~~~--~~~~~~~~i~~v~q~~~l~~ 88 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR----KGI--FLPPEKRRIGYVFQEARLFP 88 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCc----ccc--ccchhhCCeEEEecCCccCC
Confidence 5677789999999999999999999999999864 333333322100 000 00012357999999988776
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
.++...+...... .....+....+.++++.+|+.. ...+.++|+++++ ++..|++++++||+. |++
T Consensus 89 ~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~ 165 (354)
T TIGR02142 89 HLSVRGNLRYGMK---RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP 165 (354)
T ss_pred CCcHHHHHHHHhh---ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 5554444321100 1112233346788899999873 3445678988765 467999999999987 444
Q ss_pred ------HHHHhhhhc-CceeEEee
Q psy6983 193 ------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R-~r~~~~~~ 209 (210)
..++++.++ +++++++.
T Consensus 166 ~~~~l~~~L~~l~~~~g~tiiivt 189 (354)
T TIGR02142 166 RKYEILPYLERLHAEFGIPILYVS 189 (354)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEe
Confidence 355566554 78888774
No 113
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.3e-18 Score=144.92 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=95.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+|+++++|++++|+|+||||||||+++|+|+.. +.+.|+++.... . .......++.++|+||++ .++
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-----~-~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGK-----K-NKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcccc-----c-cchHHHHHhhEEEEeeCchhhhh
Confidence 566779999999999999999999999999853 333343332100 0 001112236799999986 343
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+ .+...+..... .....+..+....+.++++.+|+. . ...+.++|+++++ ++..|+++|.+|++. |
T Consensus 100 ~-~tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD 177 (290)
T PRK13634 100 E-ETVEKDICFGP-MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 (290)
T ss_pred h-hhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 2 34333331110 111223334445678899999985 3 3345678888755 467999999999987 3
Q ss_pred HH------HHHHhhhhc-CceeEEee
Q psy6983 191 PI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+. .++.++.++ |.+++++.
T Consensus 178 ~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 178 PKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33 334555444 88888874
No 114
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.74 E-value=1.3e-17 Score=153.38 Aligned_cols=166 Identities=17% Similarity=0.051 Sum_probs=105.0
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
++.|.+++++|+... ...-++|+++++|+.++|+||||||||||+++|+|++++ ..|.+.++|.++.+.....
T Consensus 334 ~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p------~~G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP------LQGEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCcEEEECCEEhhhHHHHH
Confidence 466788888876532 123336777799999999999999999999999998653 2233333443332222233
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h----h--------hhHHHHHHh-
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N----A--------SRWSLTFQT- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~----~--------~~~s~~~~~- 174 (210)
++.++||+|++.+|+. +...+.... .+..++ +...++++.+++.++- . | ..+|++.++
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g------~~~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLG------RPDATD-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhcc------CCCCCH-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 4789999999998753 333332111 111122 3456677777665211 1 1 247777654
Q ss_pred ------hccCccEEEEecCCC-----CHHHHHHhhhh--cCceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI-----TPIKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~--R~r~~~~~~ 209 (210)
++..|+++|++|+|. +-+..++++.+ +++++++|-
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 468999999999987 33444466654 478888873
No 115
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.74 E-value=6e-18 Score=136.13 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=93.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHHhcccceeeeehhhH--hhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMYENASRWSLTFQTMV--QKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~vfQ~~~--l~~~ 124 (210)
+|+++.+|++++|+||||||||||+++|+|..... .|.+.++|.++. ......++.++|++|++. +++
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 83 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ------SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA- 83 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-
Confidence 56777999999999999999999999999985421 122222222210 001111256899999973 332
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
.+...+.... .........+....+.++++.+|+.+ .....++|+++++ ++..|+++|++||+. |++
T Consensus 84 ~tv~~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 84 ADVDQDVAFG-PLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred ccHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2222222110 00111222333346778888888873 3334678887754 467999999999987 333
Q ss_pred -----HHHHhhhhcCceeEEee
Q psy6983 193 -----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 163 ~~~~~~~l~~~~~~~~tili~s 184 (190)
T TIGR01166 163 REQMLAILRRLRAEGMTVVIST 184 (190)
T ss_pred HHHHHHHHHHHHHcCCEEEEEe
Confidence 45566666788888874
No 116
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.9e-18 Score=145.75 Aligned_cols=158 Identities=15% Similarity=0.062 Sum_probs=96.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeecccccc------------ccccCcch--HHHHHhccc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLW------------RDVKGHNL--LALMYENAS 110 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~------------~~~~~~~~--l~~~~~~~~ 110 (210)
+|+++.+|++++|+||||||||||+++|+|+.. +.+.+++.... ..+.+... .......++
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 667779999999999999999999999999854 33333222100 00000000 001112236
Q ss_pred ceeeeehhh--HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccC
Q psy6983 111 RWSLTFQTM--VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 111 ~~~~vfQ~~--~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.+||+||++ .++. .++..+.... ....+.+..+...++.++++.+|+. . ...+.++|+++++ ++..
T Consensus 106 ~ig~v~Q~~~~~l~~-~tv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 106 RVGVVFQFAEYQLFE-QTIEKDIIFG-PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred ceEEEeeCccccccc-ccHHHHHHhh-HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 799999985 2332 2333222111 1112234445556788999999985 3 3345678888765 4679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+++|++||+. ||. ..+.+++++|+.++++.
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivt 222 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999999987 332 34455556688988874
No 117
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.3e-18 Score=144.32 Aligned_cols=148 Identities=11% Similarity=-0.007 Sum_probs=95.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+|+++.+||+++|+|+||||||||+++|+|+.. +.+.|+++... .. .....++.++|+||++. ++
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~--~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDK------KV--KLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCc------Cc--cHHHHhhceEEEecCchhccc
Confidence 566679999999999999999999999999854 33334333210 00 01122367999999862 22
Q ss_pred --hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--h--HHhhhhHHHHHHh-------hccCccEEEEecCCC
Q psy6983 123 --TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI 189 (210)
Q Consensus 123 --~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~ 189 (210)
+..+.+... ....+.+..+....+.++++.+|+. . ...+.++|+++++ ++..|+++|++||+.
T Consensus 98 ~~tv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~ 173 (287)
T PRK13637 98 EETIEKDIAFG----PINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173 (287)
T ss_pred cccHHHHHHhH----HHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 233333221 1111223444556678899999985 2 2335678888755 467999999999987
Q ss_pred --CHH------HHHHhhhhc-CceeEEee
Q psy6983 190 --TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 190 --~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
|+. .+++++.++ |++++++.
T Consensus 174 gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 174 GLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333 345566554 88888874
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=5e-18 Score=142.46 Aligned_cols=167 Identities=15% Similarity=0.051 Sum_probs=102.0
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.+ +.+.+.++.. .+ ....
T Consensus 8 ~~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~-~~~~- 77 (255)
T PRK11300 8 VSGLMMRFGGLLAVNN--VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG------LP-GHQI- 77 (255)
T ss_pred EeeEEEEECCEEEEEe--eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC------CC-HHHH-
Confidence 4555555544333334 556679999999999999999999999999854 3333333221 01 1111
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcc---------ccc-----ccchhhhHHHHHHHHHHcchh--hHHhhhhHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPI---------KMM-----ERSIHSARWELTQCQICSQAL--MYENASRWSL 170 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~---------~~~-----~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~ 170 (210)
.+..++|+||++.+++.++...+...... ... .....+....+.++++.+|+. ....+.++|+
T Consensus 78 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 78 -ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAY 156 (255)
T ss_pred -HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCH
Confidence 12458999999876654443332211000 000 011112334567788888886 3444567888
Q ss_pred HHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++++ ++..|+++|.+||+. |+. .++.++.++ |+.++++.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 8755 467999999999987 433 456666664 88888763
No 119
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=6.1e-18 Score=140.57 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=98.5
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhcc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~ 109 (210)
+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|.... ..|.+.++|.++. ......+
T Consensus 8 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p------~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 8 FDKVSAHYGKIQALHE--VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA------TSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred EEeEEEeeCCceeeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC------CCceEEECCEecCCCCHHHHHH
Confidence 4555555544333444 5666799999999999999999999999998542 1122222222210 0000112
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHc-chh--hHHhhhhHHHHHHh-------hccCc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICS-QAL--MYENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~-gl~--~~~~~~~~s~~~~~-------~~~~P 179 (210)
+.++|++|++.+++..+...+..... .. ....+....+.++++.+ ++. ....+.++|+++++ ++..|
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~-~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGG-FF--AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhh-hc--cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 56899999987665433333221100 00 11112223345556655 343 23345678887654 46799
Q ss_pred cEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 180 MLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++++++||+. |++ ..++++.++++.++++.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVE 194 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 9999999987 443 34666667789988874
No 120
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.73 E-value=7.4e-18 Score=142.55 Aligned_cols=154 Identities=12% Similarity=-0.010 Sum_probs=93.9
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--h
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--Q 121 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l 121 (210)
.+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... + .......++.++|++|++. +
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~------~-~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL------D-RKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc------C-HHHHHHHhhceEEEecChhhhc
Confidence 3667779999999999999999999999999854 33333332210 0 0111112356999999862 3
Q ss_pred hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 122 KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
++..+...+..............+....+.++++.+|+. . .....++|+++++ ++..|++++++||+.
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 322222221100000000111223345677888998884 2 3345678887654 467999999999987
Q ss_pred CHH------HHHHhhhh-cCceeEEee
Q psy6983 190 TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 190 ~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
|++ .+++++.+ +++.++++.
T Consensus 182 D~~~~~~l~~~l~~~~~~~g~tiiivs 208 (265)
T TIGR02769 182 DMVLQAVILELLRKLQQAFGTAYLFIT 208 (265)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 554 55666665 388888774
No 121
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.73 E-value=5.9e-18 Score=138.60 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=95.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++++|++++|+||||||||||+++|+|..... .|.+.++|.++.. ....++.++|++|++.+++.++..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~-~~~~~~~i~~v~q~~~~~~~~t~~ 88 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA------SGSIKVNDQSHTG-LAPYQRPVSMLFQENNLFAHLTVR 88 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC------CcEEEECCEEccc-CChhccceEEEeccCccCCCCcHH
Confidence 577888999999999999999999999999985421 1222222222111 001135699999998766544433
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-----
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI----- 192 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe----- 192 (210)
.+............ ...+..+.++++.+|+.+ ...+.++|+++++ ++..|++++++||+. |++
T Consensus 89 en~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 167 (213)
T TIGR01277 89 QNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 (213)
T ss_pred HHHHhHhhccCCcc-HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 33211000001111 122345677889888863 3345678887754 467999999999987 333
Q ss_pred -HHHHhhhhc-CceeEEee
Q psy6983 193 -KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 -~~l~Ri~~R-~r~~~~~~ 209 (210)
..++++.++ ++.++++.
T Consensus 168 ~~~l~~~~~~~~~tii~vs 186 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVT 186 (213)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 345555544 78888774
No 122
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=8.3e-18 Score=154.02 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=106.0
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+.. +.+.|+++.. .+...
T Consensus 7 ~~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~------~~~~~--- 75 (501)
T PRK10762 7 LKGIDKAFPGVKALSG--AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTF------NGPKS--- 75 (501)
T ss_pred EeeeEEEeCCeEEeee--eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC------CCHHH---
Confidence 4555656654333444 456669999999999999999999999999854 2333333211 00011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccc--ccc-cchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIK--MME-RSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~--~~~-~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
..++.++|+||++.+++.++...+....... ... ....+.+.++.++++.+|+.+ ...+.++|+++++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 1125699999998776555544443221110 001 112233456788899999873 3446788988765
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..+.++.+++..++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~s 198 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYIS 198 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 467999999999987 443 23566666788888774
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.73 E-value=5.9e-18 Score=139.49 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=89.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+|+++++|++++|+||||||||||+++|+|... +.+.++++... +. ......++.++|++|++. ++
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------~~-~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL------SR-RLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc------ch-hhHHHhhccEEEEecCchhhcC
Confidence 567779999999999999999999999999854 33333332210 00 000112357899999973 33
Q ss_pred hHHHHHHcCCCCcccccccc-hhhh-HHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC-
Q psy6983 123 TMLEVHLDQPITPIKMMERS-IHSA-RWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI- 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s-~~e~-~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~- 189 (210)
+.++...+.... ....... ..+. ...+.++++.+++. . ...+.++|+++++ ++..|++++++||+.
T Consensus 97 ~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 97 PRMTIGEQIAEP-LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred CcCCHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 322222221100 0001101 1111 12234778888874 2 3345678887754 467999999999987
Q ss_pred -CHH------HHHHhhhhc-CceeEEee
Q psy6983 190 -TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 190 -~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
|++ ..++++.++ ++.++++.
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tii~~s 203 (228)
T cd03257 176 LDVSVQAQILDLLKKLQEELGLTLLFIT 203 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 333 345555554 88888874
No 124
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.8e-18 Score=142.75 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=102.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
+.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|..+.. .|.+.++|.++.. .....
T Consensus 8 l~i~~l~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAEN--LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA------HGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred EEEEEEEEEECCEEEeee--cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC------CcEEEECCEEhhhCCHHHH
Confidence 345566666654434444 56667999999999999999999999999986421 2222233322211 00111
Q ss_pred ccceeeeehhhHhhhHH---HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 109 ASRWSLTFQTMVQKTML---EVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~---~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
++.++|+||++.+++.. +.+.....................+.++++.+|+.+ .....++|+++++ ++
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 24689999998665432 333221110000011111223345778888888863 3445678887654 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
..|++++++||+. |++ ..+.++.+ ++..++++.
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7999999999987 444 45556655 488888764
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.73 E-value=8.4e-18 Score=141.90 Aligned_cols=161 Identities=14% Similarity=0.016 Sum_probs=103.5
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+.... .|.+.+++.++ . ..+
T Consensus 13 l~i~~l~~~~~~~~il~~--isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~------~G~i~~~g~~~-~---~~~ 80 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQ--LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS------AGELLAGTAPL-A---EAR 80 (257)
T ss_pred EEEEEEEEEECCcceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CeEEEECCEEH-H---Hhh
Confidence 445677777765444444 56667999999999999999999999999986432 22222233322 1 123
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
+.++|++|++.+++..+...+.... ... .....+.++++.+|+.. ...+.++|+++++ ++..|+
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~---~~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLG---LKG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhc---ccc----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 6789999998766544444333111 001 12245677888888863 3445678888755 467999
Q ss_pred EEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++|++||+. |+. ..++++.+ +++.++++.
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999987 443 23445433 478888774
No 126
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.73 E-value=8.5e-18 Score=157.74 Aligned_cols=175 Identities=11% Similarity=-0.002 Sum_probs=106.9
Q ss_pred CCccccccCCC----CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccc----cccccC
Q psy6983 32 FCFLCASQNHN----STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNL----WRDVKG 98 (210)
Q Consensus 32 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~----~~~~~~ 98 (210)
+.+++++|+.. ..+++ +||++.+|++++|+||||||||||+++|+|++.. .+.+..+.+ ...+..
T Consensus 15 v~~l~~~y~~~~~~~~~l~~--is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~ 92 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRN--LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92 (623)
T ss_pred EeceEEEecCCCCceeEEEe--eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence 45666666421 22333 5666799999999999999999999999998642 222222110 000000
Q ss_pred cchHHHHHh-cccceeeeehhh--HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-----hHHhhhhHHH
Q psy6983 99 HNLLALMYE-NASRWSLTFQTM--VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-----MYENASRWSL 170 (210)
Q Consensus 99 ~~~l~~~~~-~~~~~~~vfQ~~--~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-----~~~~~~~~s~ 170 (210)
.+ ...... ..++++|+||++ .+++.+++..+...........+..+.+.++.++++.+|+. ....+.++|+
T Consensus 93 ~~-~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 93 QS-AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred CC-HHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 00 011111 124799999987 45544443333311100001123334556788999999994 2344568999
Q ss_pred HHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhc-CceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHS-ARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R-~r~~~~~~ 209 (210)
++++ ++..|+++|.+|++. |+.. +++++.++ |..+++|.
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 8866 467999999999998 6666 67777654 88888874
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=138.48 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=100.9
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENA 109 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~ 109 (210)
.+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|.... ..|.+.++|.++.. .....+
T Consensus 5 ~~~~l~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 5 EFKEVSYSSFGKEILKD--ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP------TEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred EEEeEEEEeCCeeeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEEhhhcChHHhh
Confidence 34555555544333333 5666799999999999999999999999998542 22222233322211 001123
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~P 179 (210)
+.++|++|++.+++ .+...+..... .... .....+.++++.+|+. . ...+.++|+++++ ++..|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~-~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGP-MLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcch-hhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 57899999987665 34444332111 1111 1123567788888884 2 3345678887654 46799
Q ss_pred cEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 180 MLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
+++|.+||+. |++ .+++++.+ +|+.++++.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~s 189 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999987 333 34445544 488888874
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-17 Score=141.96 Aligned_cols=169 Identities=14% Similarity=0.031 Sum_probs=100.0
Q ss_pred CCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 32 FCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
+.+++++++. ....++ +|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....
T Consensus 10 ~~nl~~~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p------~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 10 VENVSFSYPNSENNALKN--VSFEINEGEYVAILGHNGSGKSTISKILTGLLKP------QSGEIKIDGITISKENLKEI 81 (271)
T ss_pred EEeEEEEcCCCCccceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEecCcCCHHHH
Confidence 4555555542 223333 5666799999999999999999999999998542 11222222222100 00112
Q ss_pred ccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccC
Q psy6983 109 ASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 109 ~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~ 178 (210)
++.++|++|++. .++..+...+.... .........+....+.++++.+|+. ....+.++|+++++ ++..
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFG-LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 357899999973 33333333332111 0011112233344678888999886 23345678887754 4679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
|++++++||+. |+. ..+.++.+. ++.++++.
T Consensus 161 p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~s 200 (271)
T PRK13632 161 PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISIT 200 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 99999999987 443 344555444 47777763
No 129
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1e-17 Score=153.62 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=106.5
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++|+.....++ +|+++.+|++++|+||||||||||+|+|+|+.. +.+.|+++... + ...
T Consensus 8 ~~~l~~~~~~~~il~~--vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~------~-~~~-- 76 (510)
T PRK09700 8 MAGIGKSFGPVHALKS--VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL------D-HKL-- 76 (510)
T ss_pred EeeeEEEcCCeEEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCC------C-HHH--
Confidence 4566666654333444 566679999999999999999999999999853 33333333210 1 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcc---ccccc---chhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPI---KMMER---SIHSARWELTQCQICSQAL--MYENASRWSLTFQT---- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~---~~~~~---s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~---- 174 (210)
..++.++|+||++.+++.++...+...... ..... ...+....+.++++.+|+. ....+.++|+++++
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 112569999999876554444433321110 01111 1223345678889999987 34446788998765
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. ..+.++.++|+.++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 202 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS 202 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 433 34666777788888874
No 130
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=4.5e-18 Score=148.83 Aligned_cols=139 Identities=13% Similarity=-0.043 Sum_probs=104.5
Q ss_pred CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhcccceeeeeh
Q psy6983 42 NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQ 117 (210)
Q Consensus 42 ~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ 117 (210)
..++++ +|+++++|+.++|+|+||||||||.++|.++. .|.+.|+++.+.. ...++..++++..|||
T Consensus 300 ~~AVd~--isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~-------~~~mrplR~~mQvVFQ 370 (534)
T COG4172 300 LRAVDG--ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS-------RKEMRPLRRRMQVVFQ 370 (534)
T ss_pred eEEecc--ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccC-------hhhhhhhhhhceEEEe
Confidence 344444 45666999999999999999999999999984 3777777776432 2334455578999999
Q ss_pred hhH--hhhHHHHHHcCCCCccccc-ccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEE
Q psy6983 118 TMV--QKTMLEVHLDQPITPIKMM-ERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 118 ~~~--l~~~~~~~~~~~~~~~~~~-~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
+|+ |.|++++..-+.++-..+. ..+..+..+++.++|+++|+. .+++++++|++.++ ++-+|.+++.
T Consensus 371 DPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 371 DPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 996 7888876555544333332 346677778899999999998 67778899998755 4679999888
Q ss_pred ecCCC
Q psy6983 185 LDQPI 189 (210)
Q Consensus 185 Ld~~~ 189 (210)
+|+|.
T Consensus 451 DEPTS 455 (534)
T COG4172 451 DEPTS 455 (534)
T ss_pred cCCch
Confidence 88876
No 131
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=9.4e-18 Score=141.03 Aligned_cols=170 Identities=12% Similarity=-0.013 Sum_probs=101.0
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+... ..|.+.++|.++.. .....++
T Consensus 5 ~~~l~~~~~~~~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 5 TENLTVGYGTKRILND--LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP------QSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEeEEEEECCEEEEee--eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC------CCcEEEECCEEhHHCCHHHHhh
Confidence 3445555544333333 5667799999999999999999999999998542 12222333332211 0011125
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCc---ccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccC
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITP---IKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~---~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.++|+||++.+++.++...+..... ...+.....+....+.++++.+|+.. ...+.++|+++++ ++..
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 6899999976554333322221110 01111111223345778888888862 3345678887754 4679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+++|++||+. |++ ..+.++.++++.++++.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~t 195 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 99999999987 333 34445555688888764
No 132
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=9.5e-18 Score=141.89 Aligned_cols=172 Identities=11% Similarity=-0.051 Sum_probs=102.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
+.+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+.+. ..|.+.++|.++.. .....
T Consensus 12 l~i~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHP--LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP------SEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred EEEeeEEEEECCEEEEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC------CCCEEEECCEehhhCCHHHH
Confidence 345666666654333444 5666799999999999999999999999998542 12222233322211 00111
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccc---cccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKM---MERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~---~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
++.++|++|++.+++.++...+........ ...........+.++++.+++.. .....++|+++++ ++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 256899999965544333322221110000 01111223345778888888863 2334578887754 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
..|+++|.+||+. |++ .++.++.++ ++.++++.
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~s 205 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVL 205 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7999999999987 444 445555554 78888763
No 133
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.72 E-value=9.6e-18 Score=137.99 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=95.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH----HHHhcccceeeeehhhHhhhHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA----LMYENASRWSLTFQTMVQKTML 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~vfQ~~~l~~~~ 125 (210)
+|+++++|++++|+|+||||||||+++|+|.... ..|.+.++|.++.. .....++.++|+||++.+++.+
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV------QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 5666799999999999999999999999998542 22222233333211 0111236789999998765533
Q ss_pred HHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 126 EVHLDQPITPIKMME-RSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
+...+.... ..... ....+....+.++++.+|+.. .....++|+++++ ++..|++++.+||+. |++
T Consensus 98 t~~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 98 TARQNVQMA-LELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 333222100 01111 122233446788899999862 3345678877654 467999999999987 443
Q ss_pred -----HHHHhhhh-cCceeEEee
Q psy6983 193 -----KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~-R~r~~~~~~ 209 (210)
.+++++.+ .++.++++.
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~s 199 (220)
T TIGR02982 177 GRDVVELMQKLAREQGCTILIVT 199 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEe
Confidence 34555554 478888763
No 134
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.1e-17 Score=151.58 Aligned_cols=173 Identities=10% Similarity=-0.026 Sum_probs=107.6
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~ 108 (210)
.+.+++++++....+++ +|+++.+|++++|+||||||||||+|+|+|+.... +..|.+.++|.++. ......
T Consensus 7 ~~~nl~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 7 EMKNITKTFGGVKALDN--VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG----TYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred EEeeeEEEeCCeEeecc--eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CCCeEEEECCEECCCCCHHHHH
Confidence 34666666654434444 45666999999999999999999999999986430 11222223332221 000011
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccc-cc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hcc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKM-ME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~ 177 (210)
++.++|+||++.+++.++...+........ .. ....+....+.++++.+|+. ......++|+++++ ++.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 256999999987665544444432211100 00 12223345678889999986 24445688888765 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|+++|++||+. ||+ ..+.++.++|..++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~t 200 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 999999999987 433 45556666788888874
No 135
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.4e-17 Score=141.24 Aligned_cols=173 Identities=11% Similarity=0.013 Sum_probs=99.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
+.+.+++++++.......-.+|+++++|++++|+||||||||||+++|+|+.... .|.+.++|.++.. .....
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~------~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK------SGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC------ceEEEECCEECCcCCHHHH
Confidence 3456666666542211222356777999999999999999999999999985421 1222222222100 01112
Q ss_pred ccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccC
Q psy6983 109 ASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 109 ~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~ 178 (210)
++.++|++|++. +++..+...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFG-LENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhh-HHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 356899999974 33322222221110 00011122233345678888888862 2334567877654 5679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
|+++|++||+. |+. .++.++.+ +++.++++.
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivt 200 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999999987 333 34445544 378887763
No 136
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.7e-17 Score=141.94 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=95.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.|+++... .........++.++|+||++ .++
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~------~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHK------TKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccc------cccchHHHHHhheEEEecChHhccc
Confidence 566679999999999999999999999999854 33333333210 00001112236799999986 244
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hH--HhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MY--ENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+ .+...+..... .....+..+....+.++++.+|+. .. ....++|+++++ ++..|+++|.+||+. |
T Consensus 100 ~-~tv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD 177 (286)
T PRK13646 100 E-DTVEREIIFGP-KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177 (286)
T ss_pred h-hhHHHHHHhhH-HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 3 23333321111 111123334445678899999985 32 346678888755 467999999999987 4
Q ss_pred HH------HHHHhhhh-cCceeEEee
Q psy6983 191 PI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
+. ..+.++.+ .|++++++.
T Consensus 178 ~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 178 PQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33 33555554 488888874
No 137
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.72 E-value=1.2e-17 Score=140.84 Aligned_cols=173 Identities=14% Similarity=0.054 Sum_probs=103.3
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH------HH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA------LM 105 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~------~~ 105 (210)
+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|...... ...|.+.++|.++.. ..
T Consensus 7 ~~nl~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 7 VEKLAKTFNQHQALHA--VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK---SAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EeeEEEEeCCeEEEec--ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CCceEEEECCEecccccccchhH
Confidence 3455555554333444 556669999999999999999999999999864321 001222223322210 11
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCc---ccc----cccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh--
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITP---IKM----MERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~---~~~----~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-- 174 (210)
...++.++|+||++.+++.++...+..... ... .+....+....+.++++.+|+.. ...+.++|+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 122356899999987655444333321110 000 01111233346788899998862 3345678887654
Q ss_pred -----hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|++++++||+. |++ .+++++.+ +|+.++++.
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 433 45666654 488888874
No 138
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.4e-17 Score=136.36 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=93.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|+++++ ++++|+||||||||||+++|+|+.. +.+.++++... .........++.++|++|++.+++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------~~~~~~~~~~~~i~~~~q~~~~~~ 88 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS------RKKINLPPQQRKIGLVFQQYALFP 88 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc------cchhhhhhHhhcEEEEecCCccCC
Confidence 66777899 9999999999999999999999864 22333332110 000001112357899999987664
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
.++...+.... ... ......+..+.++++.+|+.. ...+.++|+++++ ++..|++++++||+. |++
T Consensus 89 ~~t~~~~l~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 165 (214)
T cd03297 89 HLNVRENLAFG-LKR--KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165 (214)
T ss_pred CCCHHHHHHHH-Hhh--CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 43333222110 000 112223346778899998873 3345678887754 467999999999987 333
Q ss_pred ------HHHHhhhhc-CceeEEee
Q psy6983 193 ------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R-~r~~~~~~ 209 (210)
..+.++.++ ++.++++.
T Consensus 166 ~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 166 LRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEe
Confidence 334444444 78888764
No 139
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=9.5e-18 Score=136.19 Aligned_cols=163 Identities=11% Similarity=-0.038 Sum_probs=97.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.......++.+
T Consensus 5 ~~l~~~~~~~~il~~--~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~------~~G~v~~~g~~~~~~~~~~~~~i 76 (200)
T PRK13540 5 IELDFDYHDQPLLQQ--ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP------EKGEILFERQSIKKDLCTYQKQL 76 (200)
T ss_pred EEEEEEeCCeeEEee--eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCeeEEECCCccccCHHHHHhhe
Confidence 344444443333333 5666799999999999999999999999998542 12222223322211111123578
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--HhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--ENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|++|++.+++..+...+..... .. .. ....+.++++.+++.+. ....++|+++++ ++..|+++|
T Consensus 77 ~~~~q~~~~~~~~tv~~~~~~~~-~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li 150 (200)
T PRK13540 77 CFVGHRSGINPYLTLRENCLYDI-HF---SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150 (200)
T ss_pred EEeccccccCcCCCHHHHHHHHH-hc---Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876654333332221100 00 11 11346778888777532 233567777644 568999999
Q ss_pred EecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 184 HLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++||+. |+ ...+.++.++++.++++.
T Consensus 151 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184 (200)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999987 32 244555556788888874
No 140
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.72 E-value=8.2e-18 Score=139.99 Aligned_cols=171 Identities=15% Similarity=-0.026 Sum_probs=98.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENAS 110 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 110 (210)
.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+... .+..|.+.++|.+.. ......+.
T Consensus 4 ~~l~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 4 KDLHVSVEDKEILKG--VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY----EVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred eeEEEEECCEEEEec--cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC----CCCcceEEECCEecCCCCHHHhhcc
Confidence 344444543223333 5666799999999999999999999999998410 112222233332211 00011123
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCC---ccccc---ccchhhhHHHHHHHHHHcchh-hH--Hhhh-hHHHHHHh------
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPIT---PIKMM---ERSIHSARWELTQCQICSQAL-MY--ENAS-RWSLTFQT------ 174 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~---~~~~~---~~s~~e~~~~~~~~L~~~gl~-~~--~~~~-~~s~~~~~------ 174 (210)
.++|++|++.+++.++...+.... ..... .....+....+.++++.+|+. .+ ..+. ++|+++++
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 489999998765433222211000 00000 011122234577888888886 33 2233 48888755
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..++++.++++.++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vs 201 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIIT 201 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 467999999999987 332 44555555678888874
No 141
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=1e-17 Score=138.23 Aligned_cols=165 Identities=11% Similarity=-0.048 Sum_probs=120.5
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
.+..++.++++..++.+++ |++++|++.+++|+|||||||++|+|.|++.+ ..+.+..+|.++.. ....
T Consensus 4 ~ie~vtK~Fg~k~av~~is--f~v~~G~i~GllG~NGAGKTTtfRmILglle~------~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNIS--FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP------TEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred EEecchhccCceeeeccee--eeecCCeEEEeecCCCCCccchHHHHhccCCc------cCceEEEcCcchhh---hhhh
Confidence 4456666677777776664 55699999999999999999999999998643 23333334443333 3337
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccE
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl 181 (210)
+|||.+..-.|++.+++..+..+ ...+.+.+..+.+..+..+|++.++. ......++|.+.++ .+..|++
T Consensus 73 rIGyLPEERGLy~k~tv~dql~y-la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKY-LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hcccChhhhccCccCcHHHHHHH-HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 89999999889888776655421 12344567788888999999999987 55566778877654 5789999
Q ss_pred EEEecCCC--CH------HHHHHhhhhcCceeEE
Q psy6983 182 EVHLDQPI--TP------IKMMERSIHSARFVLV 207 (210)
Q Consensus 182 ~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~ 207 (210)
+|+++|.. || ...+-+++.+|.+++.
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE
Confidence 99998876 44 3456788889988875
No 142
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.4e-17 Score=139.77 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=101.0
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|+..... +.+..|.+.++|.++.. ....
T Consensus 9 ~~~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 9 ETENLNLFYTDFKALNN--INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE-GIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred EEeeeEEEeCCceeecc--eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCc-CCCCceEEEECCEecccccccHHH
Confidence 35666666654434444 566679999999999999999999999999864310 01122333333333210 1112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------ 174 (210)
.++.++|++|++.+++ .+...+..... ..... ...+....+.++++.+++. ......++|+++++
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGP-KIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 2367999999976543 33333221110 01111 1122234567778887763 12234568887755
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. ..+.++. +++.++++.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~s 206 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVT 206 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 333 3455553 467777763
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.5e-17 Score=142.10 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=103.7
Q ss_pred CCCccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHH
Q psy6983 31 PFCFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMY 106 (210)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~ 106 (210)
.+.+++++++. ...+++ +|+++++||+++|+|+||||||||+++|+|+.+. ..|.+.++|.+.. ....
T Consensus 7 ~~~~l~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p------~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 7 KVEELNYNYSDGTHALKG--ININIKKGEVTAILGGNGAGKSTLFQNLNGILKP------SSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred EEEeEEEEeCCCCeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC------CccEEEECCEECCCCcchHH
Confidence 34566666642 234444 5566699999999999999999999999998542 1122222222210 0011
Q ss_pred hcccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 107 ENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++. +++ .+...+.... ....+.+..+....+.++++.+|+.. .....++|+++++ +
T Consensus 79 ~~~~~ig~v~q~~~~~~~~-~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFS-ASVYQDVSFG-AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHhhEEEEecCcchhhcc-ccHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 22367999999962 222 2322222110 11112233444456788899999873 3445678888755 4
Q ss_pred ccCccEEEEecCCC--CHHH------HHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPIK------MMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R-~r~~~~~~ 209 (210)
+..|+++|++|++. |++. .++++.++ |+.++++.
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvs 199 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIAT 199 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 68999999999987 4443 46666654 88988874
No 144
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.8e-17 Score=141.35 Aligned_cols=167 Identities=11% Similarity=0.001 Sum_probs=101.1
Q ss_pred CCccccccCCCC----CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchH
Q psy6983 32 FCFLCASQNHNS----TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 32 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l 102 (210)
+.+++++|+... ....-.+|+++++|++++|+|+||||||||+++|+|+.. +.+.++++.. .
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~---------~ 77 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD---------E 77 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc---------c
Confidence 455555664321 112233667779999999999999999999999999854 3333333221 0
Q ss_pred HHHHhcccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh----
Q psy6983 103 ALMYENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT---- 174 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~---- 174 (210)
......++.++|+||++. ++. .+...+.... .........+....+.++++.+|+.. ...+.++|+++++
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 78 ENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFG-PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred ccHHHHhhheEEEecChhhhhcc-ccHHHHHHhh-HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 011122367999999963 332 1222221110 01111223344456788999999873 3345678888755
Q ss_pred ---hccCccEEEEecCCC--CH------HHHHHhhhh-cCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TP------IKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|+++|++||+. |+ -.++.++.+ +|+.++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 22 234455544 588888874
No 145
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.72 E-value=1e-17 Score=138.59 Aligned_cols=161 Identities=16% Similarity=0.037 Sum_probs=93.5
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.++++.++.....++ +|+++++|++++|+|+||||||||+++|+|+.+ +.+.++++.. .+... .
T Consensus 4 ~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------~~~~~---~ 72 (230)
T TIGR03410 4 SNLNVYYGQSHILRG--VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITK------LPPHE---R 72 (230)
T ss_pred EeEEEEeCCeEEecc--eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC------CCHHH---H
Confidence 344444443333333 566679999999999999999999999999854 3333333221 01011 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcch-h--hHHhhhhHHHHHHh-------hcc
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQA-L--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl-~--~~~~~~~~s~~~~~-------~~~ 177 (210)
.++.++|++|++.+++.++...+.... ....... ....+.+++..++. . ......++|+++++ ++.
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~-~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTG-LAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHH-HHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 125689999998766544433332110 0001111 12234555665553 2 23345567877654 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhc-CceeEEe
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVI 208 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~ 208 (210)
.|++++++||+. |+. ..++++.++ ++.++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 188 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 999999999987 332 344455543 7888776
No 146
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.6e-17 Score=141.40 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=94.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+|+++.+||+++|+||||||||||+++|+|+.. +.+.++++.. .. ......++.++|++|++. ++
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~------~~--~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKY------DK--KSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcc------cc--chHHHHHhheEEEeeChhhhhc
Confidence 567779999999999999999999999999854 3333333310 00 001112367999999963 22
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--HhhhhHHHHHHh-------hccCccEEEEecCCC--CH
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--ENASRWSLTFQT-------MVQKTMLEVHLDQPI--TP 191 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p 191 (210)
+ .+...+...... .......+....+.++++.+|+..+ ....++|+++++ ++..|+++|.+|++. |+
T Consensus 93 ~-~tv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 170 (275)
T PRK13639 93 A-PTVEEDVAFGPL-NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170 (275)
T ss_pred c-ccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 2 232222211000 0111233344567888999988632 335678887754 467999999999987 44
Q ss_pred H------HHHHhhhhcCceeEEee
Q psy6983 192 I------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 192 e------~~l~Ri~~R~r~~~~~~ 209 (210)
. .++.++.++|+.++++.
T Consensus 171 ~~~~~l~~~l~~l~~~~~til~vt 194 (275)
T PRK13639 171 MGASQIMKLLYDLNKEGITIIIST 194 (275)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3 45666666788888874
No 147
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=149.66 Aligned_cols=165 Identities=8% Similarity=-0.043 Sum_probs=102.4
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhc
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+++++|+.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|+++... +... ..
T Consensus 3 nl~~~~~~~~il~~--vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~---~~ 71 (491)
T PRK10982 3 NISKSFPGVKALDN--VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFK------SSKE---AL 71 (491)
T ss_pred ceEEEeCCEEeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCC------CHHH---HH
Confidence 34444443333333 566679999999999999999999999999854 33333332210 1111 11
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccc--cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hcc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMME--RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~--~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~ 177 (210)
++.++|++|++.+++.++...+.......... ....+....+.++++.+|+. ......++|+++++ ++.
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 25699999998665444444333211110111 11223334677888888886 34446788888765 457
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|+++|++||+. |++ ..+.++.++|+.++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~t 191 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYIS 191 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999999999987 433 23566666788888874
No 148
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=151.98 Aligned_cols=136 Identities=13% Similarity=-0.046 Sum_probs=97.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+||++.+||+++|+|+||||||||+|+|+|+.. +.+.|.++. . . .......++++.|+||+++ |+
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~-~------~-~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD-L------T-GGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc-c------c-cchhhhhhhheEEEEeCcccccC
Confidence 667779999999999999999999999999864 333333311 0 0 1122234478899999984 78
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
|++++.....++..........+.++++.++++.+|+. ...+++++|++.++ ++..|+++|.+|++. |
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 88887766654433222223455556799999999997 56667899998765 467999999999987 4
Q ss_pred HHH
Q psy6983 191 PIK 193 (210)
Q Consensus 191 pe~ 193 (210)
+.+
T Consensus 462 vsv 464 (539)
T COG1123 462 VSV 464 (539)
T ss_pred HHH
Confidence 443
No 149
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=9.6e-18 Score=140.44 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=101.3
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|...... +.+..|.+.++|.++.. .....++
T Consensus 6 ~~~l~~~~~~~~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 6 IRDLKVSFGQVEVLDG--VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP-EARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEeeEEEECCeeeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-CCCCceEEEECCEECCcCCHHHHhc
Confidence 4555655654333333 566679999999999999999999999999864210 00123333333332210 0112235
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcc-cccccchhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------hc
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPI-KMMERSIHSARWELTQCQICSQALM------YENASRWSLTFQT-------MV 176 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~-~~~~~s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~-------~~ 176 (210)
.++|+||++.+++..+...+...... ........+....+.++++.+|+.+ .....++|+++++ ++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 79999999865543333333211000 0000112233456778888888741 2334578887755 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
..|++++.+||+. |++ .+++++. +++.++++.
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~s 202 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVT 202 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 7999999999987 333 3444443 467777763
No 150
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1e-17 Score=147.39 Aligned_cols=148 Identities=12% Similarity=0.008 Sum_probs=97.6
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|+++++|++++|+||||||||||+++|+|+.. +.+.++++..... ..+ .. ..++.++|+||++.+++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~--~~~-~~---~~~~~i~~v~q~~~l~~ 89 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK--GIC-LP---PEKRRIGYVFQDARLFP 89 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc--ccc-cc---hhhCCEEEEcCCcccCC
Confidence 5677789999999999999999999999999854 3333333221000 000 11 12367999999998887
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
.++...+..... . ......+.++++.+|+.+ ...+.++|+++++ ++..|++++++||+. |+.
T Consensus 90 ~~tv~enl~~~~----~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~ 162 (352)
T PRK11144 90 HYKVRGNLRYGM----A---KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred CCcHHHHHHhhh----h---hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHH
Confidence 666555442110 0 122345788899999873 3345678888765 467999999999987 333
Q ss_pred ------HHHHhhhhc-CceeEEee
Q psy6983 193 ------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R-~r~~~~~~ 209 (210)
..++++.++ +++++++.
T Consensus 163 ~~~~l~~~L~~l~~~~g~tii~vT 186 (352)
T PRK11144 163 RKRELLPYLERLAREINIPILYVS 186 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEe
Confidence 344555554 78888763
No 151
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.5e-18 Score=141.23 Aligned_cols=174 Identities=11% Similarity=0.033 Sum_probs=100.9
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+..... ..+..|.+.++|.++.. ....
T Consensus 6 ~i~~v~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~-~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 6 DVKDLNIYYGSFHAVED--VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP-GARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred EEeeEEEEECCEeeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc-CCCcceEEEECCEeccccccChHH
Confidence 34556656654333444 456679999999999999999999999999864210 00123333344433210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------ 174 (210)
.++.++|+||++.+++..+...+.... ...... ...+....+.++++.+|+. ......++|+++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAG-LKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 235799999997665543333322110 001111 2223344677788888873 12334567887654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|.+||+. |+. .++.++. +++.++++.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivs 204 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVT 204 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 332 3344443 457777763
No 152
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.71 E-value=2.4e-17 Score=139.65 Aligned_cols=150 Identities=10% Similarity=0.070 Sum_probs=91.9
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--h
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--Q 121 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l 121 (210)
.+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... + .. ..++.++|++|++. +
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~-~~---~~~~~i~~v~q~~~~~~ 100 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG------D-YS---YRSQRIRMIFQDPSTSL 100 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC------c-hh---hHhccEEEEecCchhhc
Confidence 3677779999999999999999999999999864 33333332210 0 11 11246899999864 3
Q ss_pred hhHHHHHHcCCCCcccc-cccchhhhHHHHHHHHHHcchh-hH--HhhhhHHHHHHh-------hccCccEEEEecCCC-
Q psy6983 122 KTMLEVHLDQPITPIKM-MERSIHSARWELTQCQICSQAL-MY--ENASRWSLTFQT-------MVQKTMLEVHLDQPI- 189 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~s~~e~~~~~~~~L~~~gl~-~~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~- 189 (210)
++..+....... .... ......+....+.++++.+|+. .+ ....++|+++++ ++..|+++|++||+.
T Consensus 101 ~~~~tv~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 179 (267)
T PRK15112 101 NPRQRISQILDF-PLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALAS 179 (267)
T ss_pred CcchhHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCccc
Confidence 333322211110 0000 0111223334577889999984 32 234678888755 467999999999987
Q ss_pred -CHHH------HHHhhhh-cCceeEEee
Q psy6983 190 -TPIK------MMERSIH-SARFVLVIE 209 (210)
Q Consensus 190 -~pe~------~l~Ri~~-R~r~~~~~~ 209 (210)
|++. ++.++.+ +|+.++++.
T Consensus 180 LD~~~~~~l~~~l~~~~~~~g~tviivs 207 (267)
T PRK15112 180 LDMSMRSQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 4432 3455544 388888874
No 153
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.71 E-value=3.9e-17 Score=155.22 Aligned_cols=167 Identities=10% Similarity=-0.068 Sum_probs=107.6
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.+.+++++|+.......-.+|+++++|+.++|+|+||||||||+++|+|++++ ..|.+.++|.++.. ....
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p------~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP------WSGEILFDGIPREEIPREV 550 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCcEEEECCEeHHHCCHHH
Confidence 4667888888875432223346777799999999999999999999999998653 22233333333211 1112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-H------------hhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-E------------NASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~------------~~~~~s~~~~~ 174 (210)
.++.++||+|++.+++. +...+.... + +..++ +.+.++++.+|+.++ . .-..+|+++++
T Consensus 551 lr~~i~~v~Q~~~lf~g-Ti~eNi~l~-----~-~~~~~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 551 LANSVAMVDQDIFLFEG-TVRDNLTLW-----D-PTIPD-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHhheeEEecCChhhhc-cHHHHhhCC-----C-CCCCH-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 34789999999988753 333333211 1 11112 335556666665411 1 11247777654
Q ss_pred -------hccCccEEEEecCCC-----CHHHHHHhhhhcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI-----TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++|+|. +-...++++.++++++++|-
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~Iiit 669 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVA 669 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEe
Confidence 468999999999987 44567788888899999873
No 154
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.71 E-value=2e-17 Score=136.32 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=92.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+||||||||||+++|+|..+. ..|.+.+++.+... ...+.++|+||++.+++..+...
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~~~~~~~---~~~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP------TSGEIIFDGHPWTR---KDLHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEeccc---cccccEEEEcCCCCccccCCHHH
Confidence 5666799999999999999999999999998542 12222233322211 11246899999976554333322
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... ...... ....+.++++.+|+.. ...+.++|+++++ ++..|++++.+||+. |++
T Consensus 90 ~~~~~-~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~ 164 (223)
T TIGR03740 90 NLKVH-TTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164 (223)
T ss_pred HHHHH-HHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH
Confidence 22100 001111 1235677888888863 3345678887654 467999999999987 443
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
.++.++.++++.++++.
T Consensus 165 ~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 165 ELIRSFPEQGITVILSS 181 (223)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 45556666688888763
No 155
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.6e-17 Score=139.37 Aligned_cols=152 Identities=16% Similarity=0.030 Sum_probs=95.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++..... .......++.++|+||++. ++
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETG------NKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc------cchHHHHHhceEEEEeChhhhhc
Confidence 556679999999999999999999999999854 3333333321000 0001122357899999862 33
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
..+...+.... .........+....+.++++.+|+. . .....++|+++++ ++..|+++|++||+. |
T Consensus 100 -~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD 177 (287)
T PRK13641 100 -ENTVLKDVEFG-PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177 (287)
T ss_pred -cchHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 22333222110 0111122334445678899999985 3 3345678888765 457999999999987 3
Q ss_pred HH------HHHHhhhhcCceeEEee
Q psy6983 191 PI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++ ..++++.++|+.++++.
T Consensus 178 ~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 178 PEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33 45666666788888874
No 156
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.3e-17 Score=138.85 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=92.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++..... . ......++.++|++|++ .++
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~----~--~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSK----N--KDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc----c--cCHHHHHhheEEEeeChhhhhc
Confidence 567779999999999999999999999999854 3333333221000 0 00111235689999986 333
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+ .+...+.... .........+....+.++++.+|+. . .....++|+++++ ++..|+++|++||+. |
T Consensus 100 ~-~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 177 (280)
T PRK13649 100 E-ETVLKDVAFG-PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177 (280)
T ss_pred c-ccHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 2 2322222110 0011112233344577888888885 2 3335678888755 467999999999987 4
Q ss_pred HH------HHHHhhhhcCceeEEee
Q psy6983 191 PI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++ ..+.++.++++.++++.
T Consensus 178 ~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 178 PKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 43 34445555678888764
No 157
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2e-17 Score=138.49 Aligned_cols=173 Identities=12% Similarity=0.079 Sum_probs=100.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.++++.++.....++ +|+++++||+++|+||||||||||+++|+|...... ..+..|.+.++|.++.. ....
T Consensus 5 ~~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 5 SVKDLDLFYGDFQALKK--INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP-SVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred EEEEEEEEECCceeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-CCCCceEEEECCEEccccccchHH
Confidence 34566666654333333 566679999999999999999999999999743110 00112333333333211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL----M--YENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~------ 174 (210)
.++.++|++|++.+++ .+...+..... ..... ...+..+.+.++++.+++. . .....++|+++++
T Consensus 82 ~~~~i~~~~q~~~~~~-~t~~~ni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 82 LRKRVGMVFQQPNPFP-MSIYDNVAYGP-RTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEecCCccCc-ccHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 2357899999976654 44433332110 11111 1223334567777777753 1 2234567887654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++.+||+. |+. .++.++. +++.++++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~s 202 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVT 202 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 467999999999987 333 4555664 477877763
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.71 E-value=2.3e-17 Score=151.45 Aligned_cols=164 Identities=10% Similarity=0.011 Sum_probs=106.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|+++.. .+ ...
T Consensus 12 l~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------~~-~~~ 82 (510)
T PRK15439 12 LCARSISKQYSGVEVLKG--IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR------LT-PAK 82 (510)
T ss_pred EEEEeEEEEeCCceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC------CC-HHH
Confidence 445677777765444444 455669999999999999999999999999854 3333333221 01 011
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
. ....++|++|++.+++.++...+..... .. ..+.+..+.++++.+|+. ....+.++|+++++ +
T Consensus 83 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 83 A--HQLGIYLVPQEPLLFPNLSVKENILFGL---PK--RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred H--HhCCEEEEeccCccCCCCcHHHHhhccc---cc--chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 1 1246899999987666555444432211 01 123345677889999987 23446688988765 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|++++++||+. |++ ..++++.++|+.++++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt 197 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 67999999999987 433 34555656688888874
No 159
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=1.9e-17 Score=135.80 Aligned_cols=165 Identities=12% Similarity=-0.004 Sum_probs=99.9
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
.+.+++.+++.....++ +|+++.+|++++|+|+||||||||+++|+|...+. .|.+.++|.++... ...+
T Consensus 13 ~~~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~i~~~--~~~~ 82 (214)
T PRK13543 13 AAHALAFSRNEEPVFGP--LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE------SGQIQIDGKTATRG--DRSR 82 (214)
T ss_pred EEeeEEEecCCceeeec--ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC------CeeEEECCEEccch--hhhh
Confidence 35666666654433433 56667999999999999999999999999986431 12222233222111 1124
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccE
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl 181 (210)
.++|++|++.+++.++...+.... ....+ ......+.+++..+++.. .....++|+++++ ++..|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~-~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFL-CGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHH-HHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 689999987665443333222100 00101 112234667888888762 2334567777654 4679999
Q ss_pred EEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 182 EVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 182 ~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++.+||+. |++ ..++++.++++.++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999987 333 34555566688888764
No 160
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.5e-17 Score=137.93 Aligned_cols=167 Identities=13% Similarity=0.004 Sum_probs=99.6
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|..+.. .|.+.++|.+.... ...++.+
T Consensus 4 ~~l~~~~~~~~il~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~------~G~i~~~g~~~~~~-~~~~~~i 74 (232)
T cd03300 4 ENVSKFYGGFVALDG--VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT------SGEILLDGKDITNL-PPHKRPV 74 (232)
T ss_pred EeEEEEeCCeeeecc--ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC------ceEEEECCEEcCcC-Chhhcce
Confidence 444444543333333 55666899999999999999999999999986421 11122222221100 0112578
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|++|++.+++.++...+.... ..............+.++++.+|+. ....+.++|+++++ ++..|+++|
T Consensus 75 ~~~~q~~~~~~~~t~~~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 75 NTVFQNYALFPHLTVFENIAFG-LRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred EEEecccccCCCCcHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998765433333222100 0011112223334567788888886 23345677777644 568999999
Q ss_pred EecCCC--------CHHHHHHhhhhc-CceeEEee
Q psy6983 184 HLDQPI--------TPIKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--------~pe~~l~Ri~~R-~r~~~~~~ 209 (210)
.+||+. .....++++.++ |++++++-
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~s 188 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVT 188 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999987 233445566554 88888873
No 161
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.71 E-value=2.1e-17 Score=136.57 Aligned_cols=163 Identities=10% Similarity=-0.049 Sum_probs=99.0
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.++++.. .+ ..
T Consensus 9 ~~~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------~~-~~-- 77 (225)
T PRK10247 9 QLQNVGYLAGDAKILNN--ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIST------LK-PE-- 77 (225)
T ss_pred EEeccEEeeCCceeeec--cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCc------CC-HH--
Confidence 35566666654434444 566679999999999999999999999999753 2233322211 01 11
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------h
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------M 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++.+++. +...+.... ...... ......+.++++.+|+. . ...+.++|+++++ +
T Consensus 78 -~~~~~i~~~~q~~~l~~~-tv~enl~~~-~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 78 -IYRQQVSYCAQTPTLFGD-TVYDNLIFP-WQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred -HHHhccEEEecccccccc-cHHHHHHhH-HhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 123578999999876542 333322110 001111 11224567888888885 2 2345667877644 5
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
+..|+++|++||+. |+. .+++++.+ ++..++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~s 195 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVT 195 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 67999999999987 333 33445443 478888764
No 162
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.71 E-value=1.6e-17 Score=140.03 Aligned_cols=168 Identities=13% Similarity=-0.048 Sum_probs=98.9
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASR 111 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 111 (210)
.+++++++....+++ +|+++++|++++|+|+||||||||+++|+|+... ..|.+.++|.++.. ......+.
T Consensus 6 ~~l~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p------~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 6 RNLSVRLGGRTLLDD--VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP------DSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred EeEEEEeCCeeeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCCEEEECCEEcccCCHHHhhhh
Confidence 344444543333333 5566799999999999999999999999998542 11222222222100 00111256
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc------
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV------ 176 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~------ 176 (210)
++|++|++.+++.++...+...... .......+....+.++++.+|+.. ...+.++|+++++ ++
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRA-PHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhc-ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 8999999765433333222211000 011111223345778888888863 3345678888755 34
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhh-hcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~-~R~r~~~~~~ 209 (210)
..|++++++||+. |++ .+++++. ++++.++++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3899999999987 444 4566665 5688888763
No 163
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.71 E-value=1.5e-17 Score=139.88 Aligned_cols=169 Identities=14% Similarity=-0.008 Sum_probs=98.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASR 111 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 111 (210)
.+++++++....+++ +|+++++|++++|+|+||||||||+++|+|..+.. .|.+.++|.++.. .....++.
T Consensus 5 ~~l~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 5 SRVSWSAGGRLIVDG--VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD------AGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred EeEEEEECCEEEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC------CCEEEECCEEcccCCHHHHhhh
Confidence 444444544333444 45666999999999999999999999999986421 2222222322110 00111246
Q ss_pred eeeeehhhHhhh---HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCc
Q psy6983 112 WSLTFQTMVQKT---MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 112 ~~~vfQ~~~l~~---~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~P 179 (210)
++|++|++.+++ ..+.+................+....+.++++.+++.+ ...+.++|+++++ ++..|
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 899999975433 23332221000000111111223346778888888863 3345678887754 46799
Q ss_pred cEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 180 MLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
+++|++||+. |+ ..+++++.+++..++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 9999999987 33 245556666677777763
No 164
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.9e-17 Score=139.86 Aligned_cols=167 Identities=15% Similarity=0.090 Sum_probs=101.6
Q ss_pred CCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
+.+++++++... ....-.+|+++.+|++++|+|+||||||||+++|+|+.. +.+.|+++.. .+ ..
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~------~~-~~-- 77 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA------EN-VW-- 77 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc------CC-HH--
Confidence 455555554321 112233667779999999999999999999999999864 3333333321 01 11
Q ss_pred HhcccceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--HhhhhHHHHHHh-------h
Q psy6983 106 YENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--ENASRWSLTFQT-------M 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--~~~~~~s~~~~~-------~ 175 (210)
..++.++|+||++. .++..+...+.... ....+....+....+.++++.+|+..+ ..+.++|+++++ +
T Consensus 78 -~~~~~i~~v~q~~~~~~~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 78 -NLRRKIGMVFQNPDNQFVGATVEDDVAFG-MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred -HHhcceEEEEECHHHhhccCCHHHHHHhh-HHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 22367999999973 33323333222110 000111223333467788888888633 234578887754 4
Q ss_pred ccCccEEEEecCCC--CH------HHHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TP------IKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|+++|++||+. |+ ...+.++.+. |++++++.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~s 198 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67999999999987 33 2455556655 88888874
No 165
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=2.4e-17 Score=135.80 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=94.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccccccc--Cc--chH----HHHHh-cccceeeeehhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVK--GH--NLL----ALMYE-NASRWSLTFQTMV 120 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~--~~--~~l----~~~~~-~~~~~~~vfQ~~~ 120 (210)
+|+++.+|++++|+|+||||||||+++|+|+.+.. .|.+.++ |. ++. ..... ..+.++|++|++.
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD------SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 66777999999999999999999999999986431 1222221 10 111 11101 1246899999987
Q ss_pred hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-H--HhhhhHHHHHHh-------hccCccEEEEecCCC-
Q psy6983 121 QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-Y--ENASRWSLTFQT-------MVQKTMLEVHLDQPI- 189 (210)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~- 189 (210)
+++.++...+.... .........+....+.++++.+|+.+ + ....++|+++++ ++..|++++++||+.
T Consensus 101 ~~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 101 VIPRVSALEVVAEP-LLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred cCCCccHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 66544333222110 00011112223345678888888863 2 245678887754 467999999999987
Q ss_pred -CHH------HHHHhhhhcCceeEEee
Q psy6983 190 -TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 190 -~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|++ ..++++.++++.++++.
T Consensus 180 LD~~~~~~l~~~l~~~~~~g~tii~vs 206 (224)
T TIGR02324 180 LDAANRQVVVELIAEAKARGAALIGIF 206 (224)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333 45556666788888774
No 166
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.1e-17 Score=151.38 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=104.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.++++.. .+...
T Consensus 7 ~~~l~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~------~~~~~--- 75 (501)
T PRK11288 7 FDGIGKTFPGVKALDD--ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRF------ASTTA--- 75 (501)
T ss_pred EeeeEEEECCEEEEee--eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC------CCHHH---
Confidence 4555555654333333 566679999999999999999999999999853 2233333211 01111
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcc-cccc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------h
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPI-KMME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-~~~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~ 175 (210)
..++.++|++|++.+++.++...+...... .... ....+....+.++++.+|+. ......++|+++++ +
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 113579999999876654444333321110 0001 11223345678889999986 34456788988765 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. |++ ..+.++.++|+.++++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiit 197 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVS 197 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57999999999987 433 44555656788888874
No 167
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.7e-17 Score=138.19 Aligned_cols=170 Identities=10% Similarity=-0.011 Sum_probs=100.6
Q ss_pred cCCCccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 30 VPFCFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+.+.+++++++. ....++ +|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++.... .
T Consensus 7 l~~~~l~~~~~~~~~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~i~~~~--~ 76 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRD--ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL------ASGKISILGQPTRQAL--Q 76 (272)
T ss_pred EEEEeEEEEecCCcEEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECCEEhHHhh--c
Confidence 345566665542 222333 5666799999999999999999999999998643 2333334444332211 1
Q ss_pred ccceeeeehhhHhhh--HHHHHHcCCCC---cccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKT--MLEVHLDQPIT---PIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~--~~~~~~~~~~~---~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
.+.++|++|++.+.. ........... ...............+.++++.+|+.. ...+.++|+++++
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lara 156 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 235899999964311 11111111100 000111111223345677888888863 3335578887754
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++.+||+. |++ ..++++.++|+.++++.
T Consensus 157 L~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivs 199 (272)
T PRK15056 157 IAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVST 199 (272)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 333 44555556688888874
No 168
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=2.8e-17 Score=130.78 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=91.4
Q ss_pred CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch-HHHHHhcccceeeeehhhH-
Q psy6983 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL-LALMYENASRWSLTFQTMV- 120 (210)
Q Consensus 43 ~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~vfQ~~~- 120 (210)
.+++. +||+..+|+.+||+|+||||||||+|+|+|...+ ..+.+.++++.+ ..++....++|.|+||+++
T Consensus 27 ~AV~~--vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P------TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 27 EAVKP--VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP------TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred hcccc--eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC------CCceEEECCccccccchHhhhhheeeeecCCcc
Confidence 44554 4566699999999999999999999999998542 333444444443 2222233367899999985
Q ss_pred -hhhHHHHHHcCCCCccc-ccccchhhhHHHHHHHHHHcchh-hHHhhh--hHH-------HHHHhhccCccEEEEecCC
Q psy6983 121 -QKTMLEVHLDQPITPIK-MMERSIHSARWELTQCQICSQAL-MYENAS--RWS-------LTFQTMVQKTMLEVHLDQP 188 (210)
Q Consensus 121 -l~~~~~~~~~~~~~~~~-~~~~s~~e~~~~~~~~L~~~gl~-~~~~~~--~~s-------~~~~~~~~~Pdl~I~Ld~~ 188 (210)
++|++++ .++.+.+.. ..+.......+++.+-|..+|+. ++.+|. -++ ...++++-.|.++|.+|+-
T Consensus 99 s~NPRl~i-GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 99 SLNPRLRI-GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred ccChhhhh-hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 6777653 344333432 23334445556788899999998 655543 233 2345567899999998874
Q ss_pred C
Q psy6983 189 I 189 (210)
Q Consensus 189 ~ 189 (210)
.
T Consensus 178 ~ 178 (267)
T COG4167 178 A 178 (267)
T ss_pred h
Confidence 4
No 169
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.1e-17 Score=138.63 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=100.2
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--H-HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--A-LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~-~~~~~ 108 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|...... ..+..|.+.++|.++. . .....
T Consensus 7 ~~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 7 TVNLRVYYGSNHVIKG--VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEeEEEEeCCeeeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc-CCCCceEEEECCEEccccccChHHH
Confidence 4555555554333444 566679999999999999999999999999864310 0011222223332221 0 00112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccc--cchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMME--RSIHSARWELTQCQICSQAL------MYENASRWSLTFQT------ 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~--~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------ 174 (210)
++.++|++|++.+++.++...+.... ....+ ....+....+.++++.+|+. ....+.++|+++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHH-HHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 35789999998766544433332110 00011 12223334567788888863 22335567877654
Q ss_pred -hccCccEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|.+||+. |+ ...++++.+ ++.++++.
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~s 205 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVT 205 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEE
Confidence 467999999999987 33 244555543 57777764
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=138.95 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=100.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.+... ..+..|.+.++|.++.. ...
T Consensus 7 l~~~~l~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 7 MEARGLSFFYGDFQALHD--ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP-GARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEeeeEEEECCeeeecc--eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCC-CCCCceEEEECCEEccccccCHH
Confidence 335666666654334444 566679999999999999999999999999742100 00122333333332210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~----- 174 (210)
..++.++|++|++.+++ .+...+.... ...... ...+....+.++++.+|+.+ .....++|+++++
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYG-LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 22357999999976654 2333222110 001111 11223345677888888742 2234568887755
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..+.++. .++.++++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~t 205 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVT 205 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 467999999999987 333 4445553 367777764
No 171
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.70 E-value=2.8e-17 Score=135.76 Aligned_cols=173 Identities=12% Similarity=0.009 Sum_probs=99.4
Q ss_pred CCCccccccCCCC--CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 31 PFCFLCASQNHNS--TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+|.++.+++.... ......+|+++++|++++|+||||||||||+++|+|.... +++..+.+.++|.++... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~---~~~~~G~i~~~g~~~~~~--~~ 79 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG---GGTTSGQILFNGQPRKPD--QF 79 (226)
T ss_pred eeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCC---CCCCceEEEECCEECChH--Hh
Confidence 4455555553321 1122235677799999999999999999999999998641 112233333344333111 22
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcc-cccc-cchhhhHHHHHH-HHHHcchhhH--HhhhhHHHHHHh-------hc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPI-KMME-RSIHSARWELTQ-CQICSQALMY--ENASRWSLTFQT-------MV 176 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-~~~~-~s~~e~~~~~~~-~L~~~gl~~~--~~~~~~s~~~~~-------~~ 176 (210)
++.++|+||++.+++.++...+...... .... ...........+ .+..+++..+ ....++|+++++ ++
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 4679999999876554443333211000 0000 011111123344 6777776532 234567877644 46
Q ss_pred cCccEEEEecCCC--CH------HHHHHhhhhcCceeEEe
Q psy6983 177 QKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~ 208 (210)
..|++++.+||+. |+ ...+.++.++++.++++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~ 199 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILT 199 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 7999999999987 32 24445555567888876
No 172
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.7e-17 Score=138.80 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=104.7
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LM 105 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~ 105 (210)
.+.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+.... ......+.+.++|.++.. ..
T Consensus 7 ~l~~~nl~~~~~~~~il~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEG--VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCCeeEeec--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC-CCccccceEEECCEEhhccccch
Confidence 4556777777755434444 56667999999999999999999999999986531 111122333444433210 01
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh----
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT---- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~---- 174 (210)
...++.++|++|++.+++ .+...+.... ...... +..+....+.++++.+++.. .....++|+++++
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYG-VKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 122356899999976655 4433332110 001111 22233345677888887631 2234567887654
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..+.++.+ +++.++++.
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 467999999999987 333 33444433 478888763
No 173
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.70 E-value=2.3e-17 Score=137.38 Aligned_cols=164 Identities=13% Similarity=-0.009 Sum_probs=97.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|... +.+.+.++... + ... .
T Consensus 6 ~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------~-~~~--~ 74 (242)
T TIGR03411 6 EGLSVSFDGFKALND--LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL------P-EHQ--I 74 (242)
T ss_pred EeeEEEcCCeEEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC------C-HHH--H
Confidence 444444543323333 566679999999999999999999999999854 33333322110 0 111 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCC---Cccc----ccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh----
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPI---TPIK----MMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT---- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~---~~~~----~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~---- 174 (210)
.++.++|+||++.+++.++...+... .... .......+....+.++++.+|+.. .....++|+++++
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 12468999999876654333222211 0000 001112234456788899888862 3345567877654
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|++++.+||+. |++ .+++++.+ ++.++++
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~ 198 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVV 198 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 467999999999987 443 34445544 6777765
No 174
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.70 E-value=4.8e-17 Score=154.10 Aligned_cols=161 Identities=11% Similarity=-0.041 Sum_probs=106.8
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.|.+++++|+.......-.+|+++++|+.+||+|+||||||||+|+|+|+++ +.++|.++... + ..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~------~-~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL------D-VQ 523 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC------C-HH
Confidence 567888888886433223334677779999999999999999999999999864 44444444321 1 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h------------hhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N------------ASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~------------~~~~s~ 170 (210)
. .++.++||+|++.+++. +...+... .++ .++ +.+.++++.+|+.++- . -..+|+
T Consensus 524 ~---lr~~i~~v~Q~~~lf~g-TI~eNi~~------~~~-~~~-e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 524 A---VRRQLGVVLQNGRLMSG-SIFENIAG------GAP-LTL-DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred H---HHhccEEEccCCccCcc-cHHHHHhc------CCC-CCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 2 23779999999988753 33333311 111 122 3456667777765211 1 124788
Q ss_pred HHHh-------hccCccEEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
++++ ++..|+++|++|+|. +-+..++.+.+.++++++|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiI 641 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVI 641 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 7754 568999999999987 4456677787778888876
No 175
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.1e-17 Score=138.30 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=100.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+..... ..+..|.+.++|.++.. ...
T Consensus 14 l~~~~l~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p-~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKN--INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYP-EQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred EEEEEEEEEeCCeEEeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC-CCCcceEEEECCEEccccccchH
Confidence 345666666654433444 566679999999999999999999999999853100 00122333333332210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccc-ccchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMM-ERSIHSARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~-~~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..+++++|+||++.+++ .+...+..... ... ..+..+....+.++++.+++. ......++|+++++
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGV-RLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhH-hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 22367999999986655 34433332110 111 112233334577888888863 12234567887654
Q ss_pred --hccCccEEEEecCCC--CHH---H---HHHhhhhcCceeEEe
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI---K---MMERSIHSARFVLVI 208 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe---~---~l~Ri~~R~r~~~~~ 208 (210)
++..|+++|++|++. |++ . .+.++. +++.++++
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~ 211 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIV 211 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 467999999999987 333 2 333443 35666665
No 176
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.70 E-value=3.9e-17 Score=138.45 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=93.6
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----HHHHhcccceeeeehhhH--hh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----ALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
.+|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++. ......++.++|++|++. +.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP------SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 36677799999999999999999999999998542 1222222222211 111122367999999973 32
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+..+...+.........+....+....+.++++.+|+. ......++|+++++ ++..|+++|++||+. |
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 22221111100000011112233344678888888884 23445578877654 467999999999987 4
Q ss_pred HH------HHHHhhhhc-CceeEEee
Q psy6983 191 PI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++ .+++++.++ +..++++.
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivs 209 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFIT 209 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 43 456666554 78888874
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.6e-17 Score=137.91 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=101.8
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|+..... ..+..|.+.++|.++.. ...
T Consensus 21 l~~~nl~~~~~~~~il~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKG--IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID-IARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEeeEEEEECCeeeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccC-CCCcceEEEECCEEcccccCChH
Confidence 456777777765444444 556669999999999999999999999999864210 01122223333333210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMME-RSIHSARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..++.++|+||++.+++ .+...+.... ..... ....+....+.++++.+++. ....+.++|+++++
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFA-LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 22367999999976654 2333332111 00011 11222334567788888773 12234567877654
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++|++. |+. .++.++. +++.++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~t 219 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVT 219 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 433 3344443 356777663
No 178
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=5.5e-17 Score=148.52 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=104.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENAS 110 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 110 (210)
.+++++|+.....++ +|+++.+|++++|+||||||||||+++|+|+.... +..|.+.++|.++. ......++
T Consensus 5 ~~l~~~~~~~~il~~--isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~----~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 5 KGIVKTFGGVKALDG--IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG----TWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EeEEEEeCCeEeecc--eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCCeEEEECCEECCCCCHHHHHhC
Confidence 444555543333333 56667999999999999999999999999986421 01222333332221 00011125
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccc-cc--cchhhhHHHHHHHHHHcchhh---HHhhhhHHHHHHh-------hcc
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKM-ME--RSIHSARWELTQCQICSQALM---YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-~~--~s~~e~~~~~~~~L~~~gl~~---~~~~~~~s~~~~~-------~~~ 177 (210)
.++|+||++.+++.++...+........ .. ....+...++.++++.+|+.. ...+.++|+++++ ++.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 6999999986654444333321110000 00 112233356778899999863 2346789998765 457
Q ss_pred CccEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
.|++++++||+. |+ ..+++++.++|+.++++.
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiit 198 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999999999987 33 344666777788888875
No 179
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.70 E-value=1.2e-16 Score=131.89 Aligned_cols=143 Identities=16% Similarity=0.125 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcceeecc----------cccc--ccccCcchHHHHHhccc---ceeeeehhhHhhh
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEP----------VNLW--RDVKGHNLLALMYENAS---RWSLTFQTMVQKT 123 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~----------~~~~--~~~~~~~~l~~~~~~~~---~~~~vfQ~~~l~~ 123 (210)
+|+|.|+.||||||+++.|+..++.....++ .... ..+++.+++..++.++. ++++.+|...+..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999976543222222 1110 11334456888887766 7888888876666
Q ss_pred HHHHHHcC-----CCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHH
Q psy6983 124 MLEVHLDQ-----PITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMM 195 (210)
Q Consensus 124 ~~~~~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l 195 (210)
++..+... ..+...+.+|+..++ .++++++...|.+ ++..|.++...+...++.||++||||+ ||+.++
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~-~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~--~~~~~~ 157 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSD-FVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDV--PVPEVQ 157 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeC--CHHHHH
Confidence 65543321 122356889999887 5888888887775 566666666554445679999999999 999999
Q ss_pred HhhhhcCce
Q psy6983 196 ERSIHSARF 204 (210)
Q Consensus 196 ~Ri~~R~r~ 204 (210)
+|+.+|||+
T Consensus 158 ~Ri~~R~~~ 166 (219)
T cd02030 158 KRIKKRGDP 166 (219)
T ss_pred HHHHHcCCc
Confidence 999999986
No 180
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.70 E-value=1.3e-16 Score=128.46 Aligned_cols=141 Identities=26% Similarity=0.378 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCC----CC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQP----IT 134 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~----~~ 134 (210)
+|+|.|+.||||||+++.|+...+..+..||.. ....+.+++..++.++..+++.+|..++..+........ ..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~--~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~ 78 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE--PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG 78 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccc--ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 489999999999999999998655555556542 001123557777776666788899887766666554432 34
Q ss_pred cccccccchhhhHHHHHHHHHHcc-hh--hHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 135 PIKMMERSIHSARWELTQCQICSQ-AL--MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 135 ~~~~~~~s~~e~~~~~~~~L~~~g-l~--~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
...+.||+..++. .+.......| .. ++..|.+|...+......||++|||++ +|++|++|+.+|+|+
T Consensus 79 ~~vI~DR~~~S~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~--~~~~~~~Ri~~R~r~ 148 (193)
T cd01673 79 QGVILERSIFSDR-VFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDA--SPETCLKRIKKRGRP 148 (193)
T ss_pred CceEEEcChhhhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeC--CHHHHHHHHHhcCcH
Confidence 5678899988875 3443333333 22 566677776655444578999999999 999999999999985
No 181
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3e-17 Score=138.37 Aligned_cols=178 Identities=13% Similarity=0.037 Sum_probs=101.0
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
+.+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|..........+.+...++|.+... .....
T Consensus 11 i~~~~~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 11 FNISRLYLYINDKAILKD--ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred eeeeeEEEecCCceeEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 345666666665544444 456669999999999999999999999999864321101112222222222210 01112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------h
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL------MYENASRWSLTFQT-------M 175 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~-------~ 175 (210)
++.++|++|++.+++.++...+..............+.+..+.++++.+++. ....+..+|+++++ +
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3678999999876654333333211100000111223344577788888874 12234567776644 5
Q ss_pred ccCccEEEEecCCC--CHH---HHHHhhhh--cCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI---KMMERSIH--SARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~--R~r~~~~~~ 209 (210)
+..|++++++||+. |++ .+.+.+.+ .+++++++.
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 68999999999987 333 23333332 357777763
No 182
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.70 E-value=5.2e-17 Score=135.18 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=97.7
Q ss_pred ccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhc
Q psy6983 34 FLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+++++++.....++ +|+++.+|++++|+||||||||||+++|+|... +.+.++++... . ..
T Consensus 5 ~l~~~~~~~~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~---------~---~~ 70 (237)
T TIGR00968 5 NISKRFGSFQALDD--VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV---------H---AR 70 (237)
T ss_pred EEEEEECCeeeeee--EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC---------C---hh
Confidence 34444443333333 566679999999999999999999999999854 23333332210 0 11
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCc
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~P 179 (210)
++.++|++|++.+++.++...+.... ..............+.++++.+++.+ ......+|+++++ ++..|
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFG-LEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhH-HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35789999998776544433332110 11111122233345678888888863 2334567777654 46799
Q ss_pred cEEEEecCCC-----CHH---HHHHhhhhc-CceeEEee
Q psy6983 180 MLEVHLDQPI-----TPI---KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~-----~pe---~~l~Ri~~R-~r~~~~~~ 209 (210)
++++.+||+. ..+ .+++++.++ ++.++++.
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~s 188 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 9999999987 223 334444444 78888763
No 183
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.70 E-value=5.3e-17 Score=136.69 Aligned_cols=171 Identities=12% Similarity=0.026 Sum_probs=99.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeecc-----ccccccccCc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEP-----VNLWRDVKGH 99 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~-----~~~~~~~~~~ 99 (210)
+.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|... +.+.+++ +.. .
T Consensus 7 l~~~~l~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~------~ 78 (258)
T PRK11701 7 LSVRGLTKLYGPRKGCRD--VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYA------L 78 (258)
T ss_pred EEEeeeEEEcCCceeeee--eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcccccccccc------C
Confidence 345666666654333333 566679999999999999999999999999854 3333332 111 0
Q ss_pred chHHHHHh-cccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHH
Q psy6983 100 NLLALMYE-NASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQ 173 (210)
Q Consensus 100 ~~l~~~~~-~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~ 173 (210)
+ ...... .++.++|++|++. +++.++...+..............+....+.++++.+++. . .....++|++++
T Consensus 79 ~-~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 S-EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred C-HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 0 011111 1356899999963 2222211111100000000011122334567888888885 2 234567888875
Q ss_pred h-------hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+ ++..|+++|++||+. |++ .+++++.++ |+.++++.
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~is 209 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 4 467999999999987 333 345555554 78888774
No 184
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.70 E-value=3.3e-17 Score=135.90 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=91.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....+|++|++.+++.++...
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~----~~~~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP------TSGGVILEGKQITE----PGPDRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEECCEECCC----CChhheEEecCcccCCCCCHHH
Confidence 5677899999999999999999999999998542 12222222222110 0012489999986654333332
Q ss_pred cCCCCccc-ccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CH---HHH
Q psy6983 130 DQPITPIK-MMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TP---IKM 194 (210)
Q Consensus 130 ~~~~~~~~-~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p---e~~ 194 (210)
+....... .......+....+.++++.+|+.. .....++|+++++ ++..|+++|.+||+. |+ +.+
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 153 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 22110000 011122333455778899888873 3345678888765 467999999999987 32 333
Q ss_pred ---HHhhhhc-CceeEEee
Q psy6983 195 ---MERSIHS-ARFVLVIE 209 (210)
Q Consensus 195 ---l~Ri~~R-~r~~~~~~ 209 (210)
+.++.++ ++.++++.
T Consensus 154 ~~~l~~~~~~~~~tii~~s 172 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVT 172 (230)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 3444343 78888874
No 185
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.8e-17 Score=136.02 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=98.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASR 111 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 111 (210)
.++++.++....+++ +|+++++|++++|+|+||||||||+++|+|+.... .+..|.+.++|.++.. .....++.
T Consensus 6 ~~l~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 6 TNLNLFYGKKQALFD--INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI---AKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeEEEECCEeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCCceEEEECCEecccCCHHHHhhh
Confidence 445555544333344 45666999999999999999999999999975310 0112222233322210 00112357
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCccccccc--chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------hc
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMER--SIHSARWELTQCQICSQALM------YENASRWSLTFQT-------MV 176 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~--s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~-------~~ 176 (210)
++|+||++.+++ .+...+..... ..... .....+..+.++++.+++.. .....++|+++++ ++
T Consensus 81 i~~~~q~~~l~~-~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 81 VGMVFQQPNVFV-KSIYENISYAP-KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred EEEEecCCcccc-ccHHHHhhhHH-hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999987665 34444432111 11111 11233345778889988841 1234567877644 56
Q ss_pred cCccEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
..|++++.+||+. |+ ..++.++. +++.++++.
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~t 198 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVT 198 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 7999999999987 22 23444443 477777763
No 186
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.69 E-value=1.5e-16 Score=131.30 Aligned_cols=147 Identities=10% Similarity=-0.055 Sum_probs=92.3
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh-----hHHHH
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK-----TMLEV 127 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~-----~~~~~ 127 (210)
++++|++++|+|+||||||||+++|+|.... ..|.+.++|.+... .++.++|++|++.+. +..+.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~----~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPP------AKGTVKVAGASPGK----GWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEECCccchH----hhCcEEEecccccccCCCCccHHHH
Confidence 4689999999999999999999999998543 22333344443211 135799999997542 22333
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--C------
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T------ 190 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~------ 190 (210)
+................+....+.++++.+|+.. ...+.++|+++++ ++..|+++|++||+. |
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 3222110001111111223345778888888862 3345678887754 467999999999987 3
Q ss_pred HHHHHHhhhhcCceeEEee
Q psy6983 191 PIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 191 pe~~l~Ri~~R~r~~~~~~ 209 (210)
....++++.++++.++++.
T Consensus 152 l~~~l~~~~~~~~tvii~s 170 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTT 170 (223)
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 3345556666788888763
No 187
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=3e-17 Score=134.01 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=95.5
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch-HHHHHhcccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL-LALMYENASR 111 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 111 (210)
.++++.++....+++ +|+++++|++++|+||||||||||+++|+|+.... .|.+.++|.+. ... .++.
T Consensus 6 ~~l~~~~~~~~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~---~~~~ 74 (207)
T PRK13539 6 EDLACVRGGRVLFSG--LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA------AGTIKLDGGDIDDPD---VAEA 74 (207)
T ss_pred EeEEEEECCeEEEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEeCcchh---hHhh
Confidence 444444443333333 56677999999999999999999999999985421 22222223221 111 2256
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--HhhhhHHHHHHh-------hccCccEE
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--ENASRWSLTFQT-------MVQKTMLE 182 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--~~~~~~s~~~~~-------~~~~Pdl~ 182 (210)
++|++|.+.+++..+...+.... ..... .....+.++++.+|+..+ ....++|+++++ ++..|+++
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~-~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFW-AAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHH-HHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 79999876554333322221100 00111 111346778888888632 234567877654 46799999
Q ss_pred EEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 183 VHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 183 I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
|++||+. |+ ...++++.++++.++++.
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (207)
T PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 9999987 32 244555555688888774
No 188
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.69 E-value=8e-17 Score=152.18 Aligned_cols=165 Identities=14% Similarity=0.030 Sum_probs=107.0
Q ss_pred cccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch-HHHHH
Q psy6983 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL-LALMY 106 (210)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~ 106 (210)
.++.|.+++++|+.......-.+|+++++||.+||+|+||||||||+|+|.|++.+ ..|.+.++|.++ .-+..
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p------~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP------QQGRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEeHHhcCHH
Confidence 35678888888888755444557777899999999999999999999999999653 333444444443 11233
Q ss_pred hcccceeeeehhhHhhhH--HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--------HHh-----hhhHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTM--LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--------YEN-----ASRWSLT 171 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~--~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--------~~~-----~~~~s~~ 171 (210)
..+++++||.|++.+|.. .+++.... +...+ +.+.+++...|..+ |.. =..+|++
T Consensus 544 ~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~---------p~~~~-e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 544 SLRRQVGYVLQDPFLFSGSIRENIALGN---------PEATD-EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred HHHhheeEEcccchhhcCcHHHHHhcCC---------CCCCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 445889999999988753 33333221 11111 22333344334331 111 1147787
Q ss_pred HHh-------hccCccEEEEecCCC-----CHHHHHHhhhhcC--ceeEEe
Q psy6983 172 FQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIHSA--RFVLVI 208 (210)
Q Consensus 172 ~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~--r~~~~~ 208 (210)
.++ ++.+|.++|++|+|. +-...++.+.+-. |++|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~I 664 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIII 664 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEE
Confidence 755 468999999999987 3345566666655 888887
No 189
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=6.5e-17 Score=149.02 Aligned_cols=175 Identities=12% Similarity=0.016 Sum_probs=103.7
Q ss_pred CCccccccCC----CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH----H
Q psy6983 32 FCFLCASQNH----NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL----A 103 (210)
Q Consensus 32 ~~~~~~~~~~----~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l----~ 103 (210)
+.+++++|+. ...+++ +|+++.+||+++|+||||||||||+++|+|+..... ..+..|.+.++|.++. .
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~--isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~-~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVND--VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP-VVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred EeceEEEecCCCCceeeeec--eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-CCccceEEEECCEecccCCHH
Confidence 3555555542 123333 566679999999999999999999999999865310 0011233333333321 1
Q ss_pred HHHh-cccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-
Q psy6983 104 LMYE-NASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-----YENASRWSLTFQT- 174 (210)
Q Consensus 104 ~~~~-~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~- 174 (210)
.... ..+.++|+||++. +++..+...+...........+..+...++.++++.+|+.+ ...+.++|+++++
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 1111 1246999999964 33332222211100000011233344567888999999853 3345788998765
Q ss_pred ------hccCccEEEEecCCC--CHHH------HHHhhhhc-CceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI--TPIK------MMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R-~r~~~~~~ 209 (210)
++..|++++.+||+. ||.. .++++.++ ++.+++|.
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 467999999999987 4443 35566554 88888874
No 190
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.7e-17 Score=139.23 Aligned_cols=174 Identities=14% Similarity=0.022 Sum_probs=101.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH--HHHhc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA--LMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~ 108 (210)
.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+..... +.+..+.+.++|.++.. .....
T Consensus 23 ~i~nl~~~~~~~~il~~--vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~-~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQ--VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVS-GYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEeeEEEEECCEEEeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCC-CCCCceEEEECCEEccccchhHHH
Confidence 45667777765444444 556669999999999999999999999999864310 11223333444433211 11122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------h
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM------YENASRWSLTFQT-------M 175 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~-------~ 175 (210)
++.++|++|++.+++ .+...+...........+..+.+..+.++++.+|+.. .....++|+++++ +
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 367899999986654 3333322110000001122333345677788888752 1224567877654 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. |+. ..+.++.+ ++.++++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivs 219 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVT 219 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 67999999999987 332 33444433 57777763
No 191
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.7e-17 Score=135.76 Aligned_cols=172 Identities=16% Similarity=0.120 Sum_probs=97.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+.+... ..+..|.+.++|.++.. .....
T Consensus 6 ~~~l~~~~~~~~~l~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKKAVKN--VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP-GFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCceeEee--eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCC-CCCcceEEEECCEEcccchhhHHHh
Confidence 4555555553333333 566779999999999999999999999999754200 00122333333333211 11122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMME-RSIHSARWELTQCQICSQALM------YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------- 174 (210)
++.++|+||++.+++ .+...+.... ..... .........+.++++.+|+.. .....++|+++++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFG-PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 357999999986654 3433332110 00111 111222344567777777641 2234567777644
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..+.++. +++.++++.
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~s 202 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVT 202 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEe
Confidence 467999999999987 332 3444444 367777763
No 192
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=9.8e-17 Score=134.62 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=101.4
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.+.... .+..|.+.++|.++.. ...
T Consensus 7 i~~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYD--ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG-CRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred EEEeeeEEEECCeeeeee--eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCC-CCcceEEEECCEEccccccchh
Confidence 345666666654444444 4566699999999999999999999999997532100 0012233333333211 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..++.++|+||++.+++. +...+..... ...+. ...+.+..+.++++.+++. ......++|+++++
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGP-RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhH-HhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 223578999999876642 3333321110 11111 1122234466677777763 12334567777654
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..++++.+ ++.++++.
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~s 205 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVT 205 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEE
Confidence 467999999999987 444 44566654 57777764
No 193
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.1e-17 Score=136.82 Aligned_cols=174 Identities=16% Similarity=0.071 Sum_probs=100.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++....+++ +|+++.+|++++|+|+||||||||+++|+|....... .+..+.+.++|.++.. ....
T Consensus 6 ~~~nl~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKD--VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS-ARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEeCCeeEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCC-CCCceEEEECCEEcccccCChHH
Confidence 34566666654333444 5566799999999999999999999999998531000 0012223333333210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------ 174 (210)
.++.++|+||++.+++..+...+.... ...... ...+....+.++++.+++.. .....++|+++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAG-YKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhH-HHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 236789999998766544433332110 001111 12223345677888888741 1234567877654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. ..++++.+ ++.++++.
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivs 204 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVT 204 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEE
Confidence 467999999999987 333 45555544 57777663
No 194
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=4.1e-17 Score=138.95 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=98.8
Q ss_pred CCccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 32 FCFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
+.+++++++. ...+++ +|+++.+|++++|+|+||||||||+++|+|... +.+.|+++.. .+ ..
T Consensus 6 ~~~l~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------~~-~~-- 74 (277)
T PRK13652 6 TRDLCYSYSGSKEALNN--INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK------EN-IR-- 74 (277)
T ss_pred EEEEEEEeCCCCceeeE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc------CC-HH--
Confidence 3455555532 223333 556679999999999999999999999999854 3333333221 00 11
Q ss_pred HhcccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 106 YENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
...+.++|+||++. +++ .+...+.... .........+....+.++++.+|+.. ...+.++|+++++
T Consensus 75 -~~~~~i~~v~q~~~~~~~~-~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 -EVRKFVGLVFQNPDDQIFS-PTVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred -HHHhheEEEecCccccccc-ccHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 22357899999962 321 2222222110 01111222333346778899988873 3345678887754
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..+.++.++ ++.++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 195 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 333 345555554 88888764
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.69 E-value=5.4e-17 Score=138.06 Aligned_cols=175 Identities=15% Similarity=-0.007 Sum_probs=99.5
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcce--eeccccccccccCcchHH-HHHhcc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITA--YAEPVNLWRDVKGHNLLA-LMYENA 109 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~--~~~~~~~~~~~~~~~~l~-~~~~~~ 109 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+..... .+....|.+.++|.++.. .....+
T Consensus 5 ~nl~~~~~~~~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 5 DHLHVARRHRAILRD--LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred EEEEEEECCEeEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence 344445544333333 566679999999999999999999999999864320 000013334444433211 011112
Q ss_pred cceeeeehhhHhh---hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc-
Q psy6983 110 SRWSLTFQTMVQK---TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV- 176 (210)
Q Consensus 110 ~~~~~vfQ~~~l~---~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~- 176 (210)
+.++|++|++.++ +..+++................+....+.++++.+|+.. .....++|+++++ ++
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 4579999986432 233333221110000000011233345778888888873 2334678887754 34
Q ss_pred --------cCccEEEEecCCC--CH------HHHHHhhhhc-CceeEEee
Q psy6983 177 --------QKTMLEVHLDQPI--TP------IKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 177 --------~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~~ 209 (210)
..|++++.+||+. |+ ..++.++.++ ++.++++.
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis 212 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV 212 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3899999999987 33 2344555555 78888774
No 196
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=1.6e-16 Score=130.59 Aligned_cols=161 Identities=18% Similarity=0.086 Sum_probs=92.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++++.......-.+|+++++|++++|+||||||||||+++|+|.... ..+.+.++|.++.. .....++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL------SSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC------CCCEEEECCEEhHhCCHHHHhh
Confidence 4455555543211122336677799999999999999999999999998532 12222233322211 0111236
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh---
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT--- 174 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~--- 174 (210)
.++|++|++.+++ .+...+... .... ..+.+.+.++.+++.++ .....+|+++++
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~-----~~~~---~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDP-----FGEY---SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCc-----CCCC---CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 7899999987664 244433311 1111 11234455666665422 234567776644
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|+++|++||+. |+. ..++++. +++.++++
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~ 194 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTI 194 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 567999999999987 333 3334443 35677765
No 197
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=5.5e-17 Score=136.65 Aligned_cols=173 Identities=11% Similarity=0.057 Sum_probs=99.0
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.++++.++....+++ +|+++.+|++++|+|+||||||||+++|+|...... ..+..|.+.++|.++.. ....
T Consensus 14 ~i~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p-~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 14 QINGMNLWYGQHHALKN--INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP-NVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred EEeeEEEEECCeeeEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCC-CCCCceEEEECCEEccccccCHHH
Confidence 34556655654333333 566679999999999999999999999999753100 00012223333332210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------ 174 (210)
.++.++|+||++.+++. +...+..... ..... ...+....+.++++.+++.+ .....++|+++++
T Consensus 91 ~~~~i~~v~q~~~~~~~-tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQ-SIFDNVAYGP-RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HhhceEEEecCCccccc-CHHHHHHhHH-HhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 23578999999766542 3333321110 11111 12223345667788877641 2234567877654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. .++.++.+ ++.++++.
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivt 211 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVT 211 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEE
Confidence 467999999999987 332 44555543 67777763
No 198
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=8.9e-17 Score=137.61 Aligned_cols=171 Identities=13% Similarity=0.006 Sum_probs=99.4
Q ss_pred cCCCccccccCCCC-----CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCc
Q psy6983 30 VPFCFLCASQNHNS-----TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGH 99 (210)
Q Consensus 30 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~ 99 (210)
+.+.+++++++... ..++ +|+++++|++++|+||||||||||+++|+|+.. +.+.++++.... .
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----~ 80 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNN--TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANL----K 80 (289)
T ss_pred EEEEEEEEEeCCCCccccceeee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccc----c
Confidence 34455655554432 2333 567779999999999999999999999999854 333333321000 0
Q ss_pred chHHHHHhcccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh
Q psy6983 100 NLLALMYENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT 174 (210)
Q Consensus 100 ~~l~~~~~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~ 174 (210)
+. ......++.++|++|++. +++ .+...+.... .........+....+.++++.+++. . .....++|+++++
T Consensus 81 ~~-~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 81 KI-KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFG-PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred cc-ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 00 001122357899999862 332 2322222110 0111112233334567788888884 2 2335678888754
Q ss_pred -------hccCccEEEEecCCC--CHHH------HHHhhhh-cCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPIK------MMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~-R~r~~~~~~ 209 (210)
++..|+++|++||+. |++. .+.++.+ +++.++++.
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis 208 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467999999999987 3332 2344544 488888874
No 199
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.68 E-value=1.1e-16 Score=148.92 Aligned_cols=167 Identities=15% Similarity=0.079 Sum_probs=102.8
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
++.+++++++|++......-.+|+++++|+.++|+|+||||||||+++|+|++++ ..|.+.++|.++-. ....
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p------~~G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI------DEGEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC------CCceEEECCEEhhhcCHHH
Confidence 4677888888765332233346777799999999999999999999999998653 12222333332211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-----h--------hhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-----A--------SRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-----~--------~~~s~~~~~ 174 (210)
.++.++|++|++.+++. +...+.... +....+.+...++++.+|+.++.. + .++|++.++
T Consensus 415 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~------~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 415 LRNQVALVSQNVHLFND-TIANNIAYA------RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HHhhceEEccCceeecc-hHHHHHhcC------CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 23679999999988763 333333211 111111234566666666552110 1 347887754
Q ss_pred -------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEe
Q psy6983 175 -------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVI 208 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~ 208 (210)
++..|+++|++|+|. |+ ...++.+.+ ++|++++|
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V 535 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 467999999999997 44 334455544 46888876
No 200
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=5e-17 Score=135.12 Aligned_cols=148 Identities=11% Similarity=0.000 Sum_probs=93.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|+++.+|++++|+|+||||||||+++|+|... +.+.|+++... . ..++.++|++|++.+++
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~---------~---~~~~~i~~~~q~~~~~~ 84 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL---------P---PEKRDISYVPQNYALFP 84 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC---------C---hhHcCEEEEeecCccCC
Confidence 3566679999999999999999999999999854 33333332210 0 11257899999987665
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CH-
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TP- 191 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p- 191 (210)
.++...+.... .........+....+.++++.+|+.. ...+.++|+++++ ++..|++++.+||+. |+
T Consensus 85 ~~t~~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 85 HMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred CccHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 44433332110 01111122334456778899999873 2234568877654 467999999999987 22
Q ss_pred --H---HHHHhhhh-cCceeEEee
Q psy6983 192 --I---KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 192 --e---~~l~Ri~~-R~r~~~~~~ 209 (210)
+ .++.++.. +++.++++.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~t 187 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVT 187 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2 33444444 388888763
No 201
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.4e-17 Score=138.00 Aligned_cols=174 Identities=13% Similarity=0.054 Sum_probs=102.2
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++....+++ +|+++++|++++|+|+||||||||+++|+|+.... .+.+..|.+.++|.++.. ...
T Consensus 20 l~~~nl~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 20 MRARDVSVFYGEKQALFD--VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTI-DGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred EEEEeEEEEECCEEEEEE--EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc-cCCCCceEEEECCEECcccccchH
Confidence 446677777664333333 56667999999999999999999999999975320 001122333333332210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccc--cchhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMME--RSIHSARWELTQCQICSQALM------YENASRWSLTFQT---- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~--~s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~---- 174 (210)
..++.++|++|++.+++. +...+.... ....+ .+..+....+.++++.+|+.. .....++|+++++
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYG-PRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHH-HHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 223578999999765542 322222110 00011 122233345678888888842 1234568887755
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. .+++++.+ ++.++++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivt 219 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVT 219 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 467999999999987 333 44555543 67777763
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=8.2e-17 Score=134.71 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=97.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH--HHHhcc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA--LMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~ 109 (210)
+.++++.++....+++ +|+++++|++++|+||||||||||+++|+|+.+... +.+..+...++|.++.. .....+
T Consensus 6 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 6 IENLDLFYGENQALKS--INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIE-GVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EeccEEEECCeeeeec--ceEEecCCCEEEEECCCCCCHHHHHHHHHhhccccc-CCCCceEEEECCEEcccccchHHHH
Confidence 4555555554333444 556679999999999999999999999999854310 00112223333322210 011223
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------h
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT-------M 175 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~-------~ 175 (210)
+.++|+||++.+++ .+...+..... ..... ........+.++++.+++.+ .....++|+++++ +
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGL-RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHH-HhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 56899999987664 34333321110 01111 11122244566777777631 1223467777644 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. |+. .+++++.+ ++.++++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~s 201 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVT 201 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 67999999999987 332 35555543 57777763
No 203
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.68 E-value=8.7e-17 Score=133.83 Aligned_cols=153 Identities=16% Similarity=0.004 Sum_probs=88.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeee-hhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTF-QTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vf-Q~~~l~~~~~~~ 128 (210)
+|+++.+|++++|+|+||||||||+++|+|+..+. .|.+.++|.+........++.++|++ |.+.+++.++..
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~------~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT------SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC------ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 56777999999999999999999999999985421 12222222221110111235689998 444443322222
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-----
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI----- 192 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe----- 192 (210)
.+... ..........+....+.++++.+|+.+ .....++|+++++ ++..|++++++||+. |++
T Consensus 114 e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 114 DSFYL-LAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHH-HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 11100 000111122233345677888888863 2335678887754 467999999999987 332
Q ss_pred -HHHHhhhh-cCceeEEee
Q psy6983 193 -KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -~~l~Ri~~-R~r~~~~~~ 209 (210)
..++.+.+ +++.++++.
T Consensus 193 ~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred HHHHHHHHhcCCCEEEEEe
Confidence 33444433 377888764
No 204
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=9e-17 Score=135.35 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=101.0
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.++++.++....+++ +|+++.+|++++|+|+||||||||+++|+|+..+.. ..+..|.+.++|.++.. ...
T Consensus 13 l~~~~l~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 13 IKVENLNLWYGEKQALKN--VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK-NCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred EEEeeeEEEeCCeeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCccc-CCCcceEEEECCEEcccccchHH
Confidence 345666666654333333 567779999999999999999999999999864310 00112223333333211 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh------
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL----M--YENASRWSLTFQT------ 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~------ 174 (210)
..++.++|+||++.+++ .+...+.... ....+.+..+....+.++++.+|+. . .....++|+++++
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYG-PRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12356899999976654 3333332110 0111112223334567788888873 1 2234567877654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |++ .+++++. +++.++++.
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivs 210 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVT 210 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEE
Confidence 467999999999987 333 3344443 467777763
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.68 E-value=7.5e-17 Score=151.37 Aligned_cols=152 Identities=12% Similarity=-0.004 Sum_probs=97.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh--Hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~ 122 (210)
+||++++|++++|+||||||||||+++|+|+.. +.+.|+++... + .......+++++|+||++ .++
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~------~-~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL------S-PGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC------C-HHHHHHhcCCeEEEecCchhhcC
Confidence 677789999999999999999999999999853 33444433211 0 011112236799999996 355
Q ss_pred hHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 123 TMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
+.+++..+.... ...... ...+.+..+.++|+.+|+. . ...+.++|+++++ ++..|+++|.+|++.
T Consensus 416 ~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~L 494 (623)
T PRK10261 416 PRQTVGDSIMEP-LRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494 (623)
T ss_pred CCCCHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 544333322110 111111 1233445678899999994 3 3345789998866 457999999999987
Q ss_pred CH------HHHHHhhhhc-CceeEEee
Q psy6983 190 TP------IKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 190 ~p------e~~l~Ri~~R-~r~~~~~~ 209 (210)
|+ ..++.++.++ |..+++|.
T Consensus 495 D~~~~~~i~~ll~~l~~~~g~tvi~is 521 (623)
T PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFIS 521 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 33 3455566554 88888774
No 206
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.68 E-value=2.7e-16 Score=129.14 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=86.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++.+|++++|+||||||||||+++|+|.... ..+.+.++|.++.. .....++.++|++|++.+++ .+..
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 95 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP------TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR 95 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC------CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence 5677799999999999999999999999998532 12222333332211 01112356899999987654 3444
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-------------hhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-------------ASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-------------~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.+..... . .. ....+.++++.+++..+.. ..++|+++++ ++..|+++|++||+
T Consensus 96 e~l~~~~-~--~~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt 168 (220)
T cd03245 96 DNITLGA-P--LA----DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPT 168 (220)
T ss_pred HHhhcCC-C--CC----CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3332110 0 01 1223456667777652221 1478887755 46799999999998
Q ss_pred C--CH---HHHHHhhhhc--CceeEEe
Q psy6983 189 I--TP---IKMMERSIHS--ARFVLVI 208 (210)
Q Consensus 189 ~--~p---e~~l~Ri~~R--~r~~~~~ 208 (210)
. |+ +.+++.+.+. ++.++++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~tii~~ 195 (220)
T cd03245 169 SAMDMNSEERLKERLRQLLGDKTLIII 195 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 7 33 3333444432 3566665
No 207
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=6.7e-17 Score=128.43 Aligned_cols=126 Identities=15% Similarity=0.030 Sum_probs=76.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+|++++|+||||||||||+++|+|..... .+.+.++|.+........++.++|+||++.+++.++...
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD------SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC------CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence 56777999999999999999999999999985421 122222222211000112357899999976554333332
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CH------HHHHHhhhhc
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TP------IKMMERSIHS 201 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R 201 (210)
+.. .|..+ .+.....++++..|++++.+||+. |+ ...++++.++
T Consensus 93 ~~~--------LS~G~--------------------~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 144 (173)
T cd03230 93 NLK--------LSGGM--------------------KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144 (173)
T ss_pred Hhh--------cCHHH--------------------HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 220 01111 011223344678999999999987 33 3455566666
Q ss_pred CceeEEee
Q psy6983 202 ARFVLVIE 209 (210)
Q Consensus 202 ~r~~~~~~ 209 (210)
|..++++.
T Consensus 145 g~tiii~t 152 (173)
T cd03230 145 GKTILLSS 152 (173)
T ss_pred CCEEEEEC
Confidence 77777763
No 208
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=8.9e-17 Score=147.81 Aligned_cols=173 Identities=13% Similarity=0.007 Sum_probs=100.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC--Ccceeeccccc-----------------c
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG--DITAYAEPVNL-----------------W 93 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~--~i~~~~~~~~~-----------------~ 93 (210)
.+++++|+.....++ +|+++.+|++++|+||||||||||+++|+|+. ... .|+..-. .
T Consensus 4 ~~l~~~~~~~~~l~~--is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~-~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 4 KNLTKKFDGKEVLKN--ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT-SGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred EEEEEEECCeEeeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC-ceEEEEecccccccccccccccccc
Confidence 344445543333333 56667999999999999999999999999984 211 1111000 0
Q ss_pred c-cccCcc-------h----HHHHHhcccceeeeehh-hHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh
Q psy6983 94 R-DVKGHN-------L----LALMYENASRWSLTFQT-MVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL 160 (210)
Q Consensus 94 ~-~~~~~~-------~----l~~~~~~~~~~~~vfQ~-~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~ 160 (210)
. ...|.+ . .......++.++|+||+ +.+++.++...+.... ......+..+...++.++++.+|+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA-LEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 0 000100 0 00111223568999997 4555433332222110 0111112234445788899999997
Q ss_pred h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHHHH------HHhhhh-cCceeEEee
Q psy6983 161 M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPIKM------MERSIH-SARFVLVIE 209 (210)
Q Consensus 161 ~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~~------l~Ri~~-R~r~~~~~~ 209 (210)
. ...+.++|+++++ ++..|++++.+||+. ||+.. ++++.+ .|+.+++|.
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 3 3346789998865 467999999999987 44433 456644 488888875
No 209
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-16 Score=134.42 Aligned_cols=172 Identities=12% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|+...... .+..|.+.++|.+... .....
T Consensus 7 ~~~l~~~~~~~~il~~--~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 7 IRGVNFFYHKHQVLKN--INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG-ARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEECCeeEecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcccc-CCcccEEEECCEEccccccChHHh
Confidence 4555555543333333 5666799999999999999999999999998653210 0112222333322210 00112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccc-hhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERS-IHSARWELTQCQICSQALM------YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s-~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------- 174 (210)
++.++|+||++.+++. +...+..... ...... ..+....+.+++..+++.+ .....++|+++++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGP-RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHH-HhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 3679999999876553 3333322111 111111 1122234566677777631 1233467777644
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. .+++++. +++.++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivs 203 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVT 203 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 333 4455553 477777763
No 210
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.68 E-value=2.2e-16 Score=131.16 Aligned_cols=150 Identities=15% Similarity=0.019 Sum_probs=84.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
.+|+++.+|++++|+|+||||||||+++|+|+... ..|.+.++|.++.. .....++.++|+||++.+++ .+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP------ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSI 92 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC------CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chH
Confidence 35677799999999999999999999999998542 12222223322211 00112356899999986654 344
Q ss_pred HHcCCCCcccccccchhhhHH-----HHHHHHHHc--chh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 128 HLDQPITPIKMMERSIHSARW-----ELTQCQICS--QAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~-----~~~~~L~~~--gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
..+...... ......... .+.+.+..+ ++. ......++|+++++ ++..|++++.+||+.
T Consensus 93 ~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~L 169 (237)
T cd03252 93 RDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169 (237)
T ss_pred HHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 333321110 011111000 112223322 222 11234578887754 467999999999987
Q ss_pred CHH------HHHHhhhhcCceeEEee
Q psy6983 190 TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 190 ~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+. ..+.++. +++.++++.
T Consensus 170 D~~~~~~l~~~l~~~~-~~~tiii~s 194 (237)
T cd03252 170 DYESEHAIMRNMHDIC-AGRTVIIIA 194 (237)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 333 3344454 477877763
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=6.7e-17 Score=135.40 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=96.3
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~~~ 108 (210)
+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|++..... .+..|.+.++|.++. ......
T Consensus 8 ~~~l~~~~~~~~~l~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYNKKKALNS--VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEECCeeeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhh
Confidence 4555555554333334 5566799999999999999999999999997431100 001222223332221 001112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccc-hhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERS-IHSARWELTQCQICSQAL------MYENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s-~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++ .+...+.... ....... .......+.++++.+++. ......++|+++++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYG-LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 356999999986654 3333322110 0011111 112234566777777763 12234567777654
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..++++. +++.++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~s 204 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVT 204 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEE
Confidence 467999999999987 333 3344443 357777764
No 212
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.1e-16 Score=135.89 Aligned_cols=172 Identities=13% Similarity=0.056 Sum_probs=98.6
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+..... ..+..|.+.++|.++.. ....
T Consensus 15 ~i~nl~~~~~~~~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 15 SLQNVTISYGTFEAVKN--VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE-GCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred EEEeEEEEECCEEEEcc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC-CCCCceEEEECCEEcccccCCHHH
Confidence 35566666654434444 566679999999999999999999999999854210 00122223333322210 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL------MYENASRWSLTFQT------- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------- 174 (210)
.++.++|+||++.+++. +...+..... ...... .+..+.+.++++.+++. ....+.++|+++++
T Consensus 92 ~~~~i~~v~q~~~l~~~-tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPK-SIYENIAFGA-RINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HhhceEEEccCCccchh-hHHHHHhhhh-hhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 23569999999876652 4433332111 111111 12234556677777763 12223567877654
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..++++. +++.++++.
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivt 210 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVT 210 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 433 2444443 467777663
No 213
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=9.3e-17 Score=134.62 Aligned_cols=171 Identities=14% Similarity=0.073 Sum_probs=98.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++....+++ +|+++.+|++++|+|+||||||||+++|+|...... ..+..|.+.++|.++.. .....
T Consensus 7 ~~~l~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQALND--INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS-NVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCeeeeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccc-CCCCccEEEECCEecccccccHHHH
Confidence 4555555554333334 566679999999999999999999999999753210 00112233333332210 01112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL----M--YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++ .+...+..... ..... ...+....+.++++.+|+. . -....++|+++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGP-RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHH-HhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 356899999987654 44333331110 01111 1222334566788888763 1 2234567877654
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|+++|++|++. |+. ..+.++.+ ++.++++
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiiv 202 (251)
T PRK14270 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIV 202 (251)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 457999999999987 443 44555544 5777766
No 214
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=5.1e-16 Score=140.36 Aligned_cols=167 Identities=10% Similarity=-0.030 Sum_probs=115.1
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+.+.+|+...++++++ |++.+||+.||+|+||||||||+|+|+|.+. +.+.|+++... +..+
T Consensus 11 ~~~i~K~FggV~AL~~v~--l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~------sp~~--- 79 (500)
T COG1129 11 LRGISKSFGGVKALDGVS--LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS------SPRD--- 79 (500)
T ss_pred eecceEEcCCceeeccce--eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC------CHHH---
Confidence 466666777777776665 4459999999999999999999999999753 55555554421 1122
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccc---cccchhhhHHHHHHHHHHcchh-h-HHhhhhH-------HHHHHh
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKM---MERSIHSARWELTQCQICSQAL-M-YENASRW-------SLTFQT 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~---~~~s~~e~~~~~~~~L~~~gl~-~-~~~~~~~-------s~~~~~ 174 (210)
....-|++|+|+..|.|.+++..+........ .-......+..+.++|..+|+. + -....++ ...+++
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 22367899999999999998888774322211 1113345556788899988874 1 1122233 344455
Q ss_pred hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
+...+.++|++|||. -.-..+.|++.+|..++.|-
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~IS 202 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS 202 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 667999999999987 23346788999999988773
No 215
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=3.6e-16 Score=129.14 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=91.7
Q ss_pred CCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhc
Q psy6983 31 PFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~ 108 (210)
.+.+++++++.. ...++ +|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....
T Consensus 4 ~~~~l~~~~~~~~~~l~~--isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 4 EFENVNFSYDEKKPVLKD--INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP------QKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEecCCCCccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC------CCCEEEECCEeHHHcCHHHH
Confidence 345555555432 23333 5666799999999999999999999999998542 12223333332211 01112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-------------HHhhhhHHHHHHh-
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-------------YENASRWSLTFQT- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-------------~~~~~~~s~~~~~- 174 (210)
++.++|++|++.+++. +...+...... ... ...+.+.++.+++.. .....++|+++++
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRP---NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 3568999999876653 44433321100 000 112233333333321 1123567777654
Q ss_pred ------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 ------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|++++++||+. |+. .++.++. +++.++++
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~ 194 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIII 194 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 468999999999987 332 3444443 47777776
No 216
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6e-17 Score=135.67 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=96.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.++++.++.....++ +|+++++|++++|+|+||||||||+++|+|+.+... ..+..|.+.++|.++.. .....
T Consensus 6 ~~~~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 6 ARDVNFWYGDFHALKG--ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-ATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEECCEeEEee--eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-CCCCceEEEECCEecccccccHHHH
Confidence 3444444543323333 566779999999999999999999999998632100 00012233333333211 01122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++ .+...+.... ...... ........+.++++.+|+.+ .....++|+++++
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYG-LRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 357999999976654 2332222110 001111 11122345677888888741 2334578887754
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..+.++. +++.++++.
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivt 202 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVT 202 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 467999999999987 332 3444443 467777763
No 217
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.4e-16 Score=134.99 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=98.0
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+..... ..+..|.+.++|.++.. ...
T Consensus 22 l~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVND--ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP-SARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred EEEEEEEEEeCCceeeec--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccC-CCCCceEEEECCEEcccccccHH
Confidence 345666666665444444 556669999999999999999999999999642100 00122223333322210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..++.++|++|++.+++. +...+.... ...... ........+.+++..+++. ......++|+++++
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHA-LKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 123579999999866542 333222110 000010 1112223456677777763 12334568887754
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ .++.++. +++.++++.
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~t 220 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVT 220 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEE
Confidence 467999999999987 332 3444443 356777663
No 218
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.67 E-value=4.1e-17 Score=142.84 Aligned_cols=154 Identities=14% Similarity=-0.027 Sum_probs=108.6
Q ss_pred CccccccCCC----CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 33 CFLCASQNHN----STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 33 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
.++++.+... .++++ +||.+.+||++||+|+||||||-.+..+++++..... ....+.+.|+|.+++......
T Consensus 10 ~nLsV~f~~~~~~~~aVk~--isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~-~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 10 RNLSVAFHQEGGTVEAVKG--ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA-AHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eccEEEEecCCcceEeecc--ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcc-cCccceeEEcChhhhcCCHHH
Confidence 4555554422 33344 5666799999999999999999999999998642111 112334555565554322222
Q ss_pred c-----cceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-----hHHhhhhHHHHHHh--
Q psy6983 109 A-----SRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-----MYENASRWSLTFQT-- 174 (210)
Q Consensus 109 ~-----~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-----~~~~~~~~s~~~~~-- 174 (210)
. .+|+|+||+|. |+|.+++..+..+....+.+.+..+++.++.++|+.+|+. .-.+++++|++.++
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 2 46899999984 7888777666654444555667888889999999999997 34456789998765
Q ss_pred -----hccCccEEEEecCCC
Q psy6983 175 -----MVQKTMLEVHLDQPI 189 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~ 189 (210)
++..||++|-+|+|+
T Consensus 167 MIAMALan~P~lLIADEPTT 186 (534)
T COG4172 167 MIAMALANEPDLLIADEPTT 186 (534)
T ss_pred HHHHHHcCCCCeEeecCCcc
Confidence 357999999999987
No 219
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.67 E-value=2.3e-16 Score=146.82 Aligned_cols=167 Identities=13% Similarity=0.021 Sum_probs=104.2
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.|.+++++|++......-.+|+++++|+.++|+||||||||||+++|+|++++ ..|.+.++|.++.. ....
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p------~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP------QQGEILLNGQPIADYSEAA 411 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEEhhhCCHHH
Confidence 4667888888765322223346777799999999999999999999999998642 12222222322211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh------------hhhHHHHHHh-
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN------------ASRWSLTFQT- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~------------~~~~s~~~~~- 174 (210)
.++.++|++|++.+++. +...+.... .+.. ..+.+.++++.+++.++.. -.++|++.++
T Consensus 412 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~------~~~~-~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 412 LRQAISVVSQRVHLFSA-TLRDNLLLA------APNA-SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HHhheeEEcccchhhcc-cHHHHhhcC------CCcc-CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 23679999999988763 444443211 1111 2234667777777763321 2357777654
Q ss_pred ------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~~ 209 (210)
++..|+++|++|++. |+ +..++.+.+ ++|++++|-
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiit 531 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT 531 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 468999999999987 33 334444443 578888873
No 220
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.67 E-value=2.8e-16 Score=132.11 Aligned_cols=152 Identities=14% Similarity=0.000 Sum_probs=96.1
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+..+ ..|.+.+++ ...
T Consensus 7 ~~~l~~~~~~~~vl~~--vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p------~~G~i~~~~----------~~~ 68 (251)
T PRK09544 7 LENVSVSFGQRRVLSD--VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP------DEGVIKRNG----------KLR 68 (251)
T ss_pred EeceEEEECCceEEEe--EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEECC----------ccC
Confidence 4555555554333333 5666799999999999999999999999998643 222222222 146
Q ss_pred eeeeehhhHhhhHH--HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCcc
Q psy6983 112 WSLTFQTMVQKTML--EVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~--~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pd 180 (210)
++|++|++.+++.+ +....... .. .. ....+.++++.+|+.+ .....++|+++++ ++..|+
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~------~~-~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 140 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRL------RP-GT-KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQ 140 (251)
T ss_pred EEEeccccccccccChhHHHHHhc------cc-cc-cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999997654432 22211110 00 00 1234667888888863 2345678887754 467999
Q ss_pred EEEEecCCC--CHHH------HHHhhhhc-CceeEEee
Q psy6983 181 LEVHLDQPI--TPIK------MMERSIHS-ARFVLVIE 209 (210)
Q Consensus 181 l~I~Ld~~~--~pe~------~l~Ri~~R-~r~~~~~~ 209 (210)
+++++||+. |++. .+.++.++ ++.++++.
T Consensus 141 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivs 178 (251)
T PRK09544 141 LLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178 (251)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999987 4432 34455555 78888764
No 221
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.5e-16 Score=133.20 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=97.9
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+..... ..+..|.+.++|.++.. ....
T Consensus 6 ~~~~l~~~~~~~~~l~~--~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p-~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 6 SAKDVHLSYGNYEALHG--ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIE-NIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred EEEeeEEEECCeeeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccccc-CCCcceEEEECCEEcccccchHHH
Confidence 34555555554333333 566679999999999999999999999999863100 00112223333332210 1112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccc-hhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERS-IHSARWELTQCQICSQAL------MYENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s-~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------ 174 (210)
.++.++|++|++.+++ .+...+.... ....... .......+.++++.+++. ......++|+++++
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYG-LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 2356899999976653 2332222110 0011111 111223466777877773 12234567777644
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ .+++++. ++++++++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiis 203 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVT 203 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 568999999999987 343 3444543 367777763
No 222
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.67 E-value=1.9e-16 Score=131.14 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=94.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhH--hhhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QKTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~~~~~~ 127 (210)
+|+++++|++++|+||||||||||+++|+|+.... ..+..|.+.++|.++... ....+.++|++|++. +.+.++.
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG--LTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc--cCccccEEEECCEechhh-hhhhheeEEEecCchhhcCcccCH
Confidence 56777999999999999999999999999986531 001233334444443221 111246899999974 3222222
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALM-----YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
..+.... ..............+.++++.+++.+ .....++|+++++ ++..|++++++||+. |++
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 82 GNHAIET-LRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHH-HHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 1111000 00011111233456788899888852 2234568887754 467999999999987 443
Q ss_pred -----HHHHhhhh-cCceeEEee
Q psy6983 193 -----KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~-R~r~~~~~~ 209 (210)
.++.++.+ .++.++++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~s 183 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLIT 183 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 34555555 378888874
No 223
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.66 E-value=2.4e-16 Score=132.15 Aligned_cols=174 Identities=12% Similarity=0.020 Sum_probs=95.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.. +.+.+++... .+..... .....
T Consensus 6 ~~~l~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~-~~~~~ 81 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRD--VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAE-LELYQLS-EAERR 81 (253)
T ss_pred EeeeEEEeCCceEeec--ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccc-cccccCC-HHHHH
Confidence 3444555543333333 566779999999999999999999999999854 3333322000 0000000 01111
Q ss_pred -hcccceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh------
Q psy6983 107 -ENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT------ 174 (210)
Q Consensus 107 -~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~------ 174 (210)
...+.++|++|++. +.+..+...+..............+....+.++++.+|+. . .....++|+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 11246899999863 2222211111100000000001112234567888888884 2 2334578887754
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++..|++++++||+. |++ .+++++.+ ++..++++.
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs 206 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 468999999999987 433 33445544 488888874
No 224
>KOG0058|consensus
Probab=99.66 E-value=1.2e-16 Score=147.93 Aligned_cols=164 Identities=15% Similarity=0.042 Sum_probs=104.3
Q ss_pred cccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcch
Q psy6983 28 LSVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNL 101 (210)
Q Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~ 101 (210)
..+.|++++++|+... ......+||++++||++||+||||+||||++.+|.++++ +.++|.|+.+ +
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~--------~ 535 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD--------I 535 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh--------c
Confidence 4677888888888763 334445778889999999999999999999999999875 4444444432 1
Q ss_pred HHHHHhcccceeeeehhhHhhhH--HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-----hHHhh-----hhHH
Q psy6983 102 LALMYENASRWSLTFQTMVQKTM--LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-----MYENA-----SRWS 169 (210)
Q Consensus 102 l~~~~~~~~~~~~vfQ~~~l~~~--~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-----~~~~~-----~~~s 169 (210)
-..++ ++++|+|-|+|.||.. .+++..... .-+.++. ..+++....-+.. .|..- .++|
T Consensus 536 ~~~~l--r~~Ig~V~QEPvLFs~sI~eNI~YG~~------~~t~e~i-~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 536 NHKYL--RRKIGLVGQEPVLFSGSIRENIAYGLD------NATDEEI-EAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred CHHHH--HHHeeeeeccceeecccHHHHHhcCCC------CCCHHHH-HHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 12222 3789999999998853 444444322 1122222 2222222211111 11111 1567
Q ss_pred HHHHh-------hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
|++++ ++.+|-++|.+|+|. --+..+.|+.+. |+|+||-
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 77644 578999999999986 234555566555 9999983
No 225
>PLN03211 ABC transporter G-25; Provisional
Probab=99.66 E-value=1.4e-16 Score=150.29 Aligned_cols=162 Identities=10% Similarity=-0.056 Sum_probs=102.6
Q ss_pred ccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeeh
Q psy6983 38 SQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQ 117 (210)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ 117 (210)
+++....+++ +|+++++||+++|+||||||||||+++|+|..... ...|.+.++|.+.... ..++++|++|
T Consensus 77 ~~~~~~iL~~--vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~----~~sG~I~inG~~~~~~---~~~~i~yv~Q 147 (659)
T PLN03211 77 QIQERTILNG--VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN----NFTGTILANNRKPTKQ---ILKRTGFVTQ 147 (659)
T ss_pred cCCCCeeeeC--CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC----ceeEEEEECCEECchh---hccceEEECc
Confidence 3443333333 56777999999999999999999999999986431 1233444455443221 2256899999
Q ss_pred hhHhhhHHHHHHcCCCCc-ccc-cccchhhhHHHHHHHHHHcchhhHH-------hhhhHHHHHHh-------hccCccE
Q psy6983 118 TMVQKTMLEVHLDQPITP-IKM-MERSIHSARWELTQCQICSQALMYE-------NASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~-~~~-~~~s~~e~~~~~~~~L~~~gl~~~~-------~~~~~s~~~~~-------~~~~Pdl 181 (210)
+..+++.+++..+..... ... .+.+..+...++.++++.+|+.+.. ....+|+++++ ++..|++
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 987665443332221100 010 0112334445678889999986432 23568888755 4679999
Q ss_pred EEEecCCC--------CHHHHHHhhhhcCceeEEe
Q psy6983 182 EVHLDQPI--------TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 182 ~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~ 208 (210)
++++||+. .....++++.++||+++++
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~ 262 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999987 3344555666679998886
No 226
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.66 E-value=3.9e-16 Score=143.69 Aligned_cols=163 Identities=14% Similarity=0.036 Sum_probs=102.3
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.+.+++++|+.......-.+|+++++|+.++|+||||||||||+++|+|++++ .+++.++... + ..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~------~-~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA------D-AD 392 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC------C-HH
Confidence 4667788877765432223336777799999999999999999999999998653 3333333211 0 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--------H-----hhhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--------E-----NASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--------~-----~~~~~s~ 170 (210)
.. ++.++|++|++.+++. +...+..... ...++ +...++++.+++.++ . .-.++|+
T Consensus 393 ~l---r~~i~~v~Q~~~lf~~-ti~~Ni~~~~------~~~~~-~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 393 SW---RDQIAWVPQHPFLFAG-TIAENIRLAR------PDASD-AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred HH---HhheEEEcCCCcccCc-CHHHHHhccC------CCCCH-HHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 22 3679999999988753 3333332111 11111 335556666665411 1 1135777
Q ss_pred HHHh-------hccCccEEEEecCCC-----CHHHHHHhhhh--cCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~--R~r~~~~~~ 209 (210)
++++ ++..|+++|++|++. +.+..++.+.+ +++++++|-
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~it 514 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVT 514 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 7654 467999999999987 33344455554 578888874
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2.3e-16 Score=130.68 Aligned_cols=148 Identities=15% Similarity=0.071 Sum_probs=82.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++++|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....++.++|++|++.+++ .+..
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV------DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVA 93 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC------CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHH
Confidence 5666799999999999999999999999998542 12222233322211 01112356899999986654 3433
Q ss_pred HcCCCCcccccccchhhhHH-----HHHHHHHHc--chh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 129 LDQPITPIKMMERSIHSARW-----ELTQCQICS--QAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~-----~~~~~L~~~--gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
.+...... .....+... .+.+.++.+ ++. ......++|+++++ ++..|++++.+||+. |
T Consensus 94 enl~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 170 (234)
T cd03251 94 ENIAYGRP---GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170 (234)
T ss_pred HHhhccCC---CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 33321110 011111100 122333333 222 11223467776644 568999999999987 3
Q ss_pred HH------HHHHhhhhcCceeEEe
Q psy6983 191 PI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 191 pe------~~l~Ri~~R~r~~~~~ 208 (210)
+. .+++++. +++.++++
T Consensus 171 ~~~~~~l~~~l~~~~-~~~tii~~ 193 (234)
T cd03251 171 TESERLVQAALERLM-KNRTTFVI 193 (234)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEE
Confidence 33 3444443 47777776
No 228
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.66 E-value=4.3e-16 Score=129.41 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=83.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++++|++++|+|+||||||||+++|+|+... ..|.+.++|.++.. .....++.++|++|++.+++ .+..
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~------~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP------TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIA 94 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC------CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHH
Confidence 5666799999999999999999999999998532 22222333322211 01111256899999987665 3444
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchh-------------hHHhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQAL-------------MYENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-------------~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.+...... ..... ...+.++..++. ....+.++|+++++ ++..|+++|++||+
T Consensus 95 e~l~~~~~---~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 95 ENIRYGKP---DATDE----EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred HHhhccCC---CCCHH----HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 33321110 11111 111222222222 11223567777654 46799999999998
Q ss_pred C--CHH---HHHHhhhh--cCceeEEee
Q psy6983 189 I--TPI---KMMERSIH--SARFVLVIE 209 (210)
Q Consensus 189 ~--~pe---~~l~Ri~~--R~r~~~~~~ 209 (210)
. |+. .+++.+.+ +++.++++.
T Consensus 168 ~gLD~~~~~~l~~~l~~~~~g~~vi~~s 195 (238)
T cd03249 168 SALDAESEKLVQEALDRAMKGRTTIVIA 195 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 7 333 33333322 577877763
No 229
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.2e-16 Score=133.90 Aligned_cols=172 Identities=14% Similarity=0.072 Sum_probs=94.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|....... ....+.+.++|.++.. .....
T Consensus 7 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 7 AQDVNIYYGDKQAVKN--VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG-ARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EeeeEEEECCEEeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcC-CCCceeEEECCEEcccCccCHHHh
Confidence 4555555554333444 5566799999999999999999999999998543210 0011222233322110 00122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++..+...+.... ...... ...+..+.+.+++..+++. ......++|+++++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAG-LKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 35689999998765543333322100 000011 1122233455556656542 12224567877654
Q ss_pred hccCccEEEEecCCC--CH---H---HHHHhhhhcCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--TP---I---KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~p---e---~~l~Ri~~R~r~~~~~ 208 (210)
++..|+++|++||+. |+ + ..++++. +++.++++
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~ 203 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIV 203 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 467999999999987 32 2 3344443 45666665
No 230
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=2.1e-16 Score=127.81 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=88.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+|+||||||||+++|+|...+. .|.+.++|.++.... .+.++|++|+..+++..+...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~i~~~~---~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS------SGNIYYKNCNINNIA---KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC------CcEEEECCcccChhh---hhhEEeccCCcCCCccCCHHH
Confidence 77888999999999999999999999999985432 222222332221111 245789998864433333222
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--C---HHHHH
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--T---PIKMM 195 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~---pe~~l 195 (210)
+.... .... .....+.++++.+++. ......++|+++++ ++..|++++++||+. | .+...
T Consensus 90 ~l~~~-~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~ 163 (195)
T PRK13541 90 NLKFW-SEIY-----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN 163 (195)
T ss_pred HHHHH-HHhc-----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 22100 0000 1123456677777776 23345567777644 567999999999987 3 23333
Q ss_pred Hhh---hhcCceeEEee
Q psy6983 196 ERS---IHSARFVLVIE 209 (210)
Q Consensus 196 ~Ri---~~R~r~~~~~~ 209 (210)
+.+ .++++.++++.
T Consensus 164 ~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 164 NLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 333 35678888774
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.66 E-value=2.2e-16 Score=145.56 Aligned_cols=170 Identities=14% Similarity=-0.008 Sum_probs=103.2
Q ss_pred cCCCccccccCC-----------CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccC
Q psy6983 30 VPFCFLCASQNH-----------NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKG 98 (210)
Q Consensus 30 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~ 98 (210)
+.+.+++++|+. ....++ +|+++.+|++++|+||||||||||+++|+|+.. . .|.+.++|
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~-----~G~i~~~g 346 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKN--ISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--S-----QGEIWFDG 346 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--C-----CcEEEECC
Confidence 446677776642 122333 677789999999999999999999999999753 1 12222222
Q ss_pred cchH----HHHHhcccceeeeehhhH--hhhHHHHHHcCCCCcccccc--cchhhhHHHHHHHHHHcchh-h--HHhhhh
Q psy6983 99 HNLL----ALMYENASRWSLTFQTMV--QKTMLEVHLDQPITPIKMME--RSIHSARWELTQCQICSQAL-M--YENASR 167 (210)
Q Consensus 99 ~~~l----~~~~~~~~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~--~s~~e~~~~~~~~L~~~gl~-~--~~~~~~ 167 (210)
.++. ......+++++|+||++. +++.+++..+.... ..... .+..+....+.++++.+|+. . ...+.+
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 425 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG-LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE 425 (529)
T ss_pred EEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH-HHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence 2211 111111356899999962 44433333222110 00000 12223345678889999985 2 344578
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+|+++++ ++..|+++|++||+. |+. ..++++.++ |+.++++.
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs 483 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 9998866 357999999999987 333 345555544 88888774
No 232
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=4.1e-16 Score=132.92 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=97.8
Q ss_pred cCCCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHH
Q psy6983 30 VPFCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~ 106 (210)
+.|.++++++.. ...+++ +|+++++||+++|+|+||||||||+++|+|+.+ . .|.+.++|.++.. ...
T Consensus 3 i~~~nls~~~~~~~~~~l~~--isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~------~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLEN--ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T------EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCCCCCcceec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C------CcEEEECCEEhhhCCHH
Confidence 345556666642 223333 566779999999999999999999999999863 1 1223333333211 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-Hh-hhh-----------HHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-EN-ASR-----------WSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~~-~~~-----------~s~~~~ 173 (210)
..++.++|++|++.+++. +...+... .... ..+.+.++++.+|+..+ .. +.. +|++++
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~-----~~~~---~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDP-----YGKW---SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhh-----ccCC---CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 223679999999988763 44444311 1111 11345667778888622 22 222 777765
Q ss_pred h-------hccCccEEEEecCCC--CHH---HHHHhhh--hcCceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TPI---KMMERSI--HSARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~--~R~r~~~~~~ 209 (210)
+ ++..|++++++|++. |++ .+.+.+. ..++++++|.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~is 194 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSE 194 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4 567999999999987 443 2233333 2467877763
No 233
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.66 E-value=2.6e-16 Score=143.72 Aligned_cols=161 Identities=9% Similarity=-0.119 Sum_probs=99.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 110 (210)
+.+++++|+....+++ +|+++.+|++++|+||||||||||+|+|+|+.... .|.+.+++.+... .....++
T Consensus 6 ~~~l~~~~~~~~il~~--vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~------~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 6 ISQGTFRLSDTKTLQL--PSLTLNAGDSWAFVGANGSGKSALARALAGELPLL------SGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred EEeEEEEcCCeeeccc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC------CceEEECCcccccCCHHHHHH
Confidence 4556666654444444 45666999999999999999999999999985421 1111112211100 0011124
Q ss_pred ceeeeehhhHh--hhH------HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh------
Q psy6983 111 RWSLTFQTMVQ--KTM------LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------ 174 (210)
Q Consensus 111 ~~~~vfQ~~~l--~~~------~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------ 174 (210)
.+++++|++.+ ++. ++..... .. ..++..++.++++.+|+.+ ...+.++|+++++
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEII--------QD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhc--------cc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence 58999998532 111 1111111 00 1123456788899999873 3445688998865
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. ||+ ..++++.++|..++++.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~t 192 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 457999999999987 433 45666766788888875
No 234
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.66 E-value=5.2e-16 Score=128.02 Aligned_cols=172 Identities=15% Similarity=-0.016 Sum_probs=95.6
Q ss_pred cCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 30 VPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
+.+.+++++++... ....-.+|+++++|++++|+||||||||||+++|+|+.... .|.+.++|.++.. ....
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ------GGQVLLDGKPISQYEHKY 85 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC------CcEEEECCCchHHcCHHH
Confidence 34566666665321 11223366777999999999999999999999999986421 2222233322211 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccc-ccc-chhhhHHHHHHHHHHc--chh--hHHhhhhHHHHHHh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKM-MER-SIHSARWELTQCQICS--QAL--MYENASRWSLTFQT------- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-~~~-s~~e~~~~~~~~L~~~--gl~--~~~~~~~~s~~~~~------- 174 (210)
.++.++|++|++.+++ .+...+........ ... ........+.+.++.+ |+. ......++|+++++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 2356899999987765 34444432111100 000 0000111234566666 554 23335678887754
Q ss_pred hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~ 208 (210)
++..|+++|.+||+. |+ +.+.+.+.+ +++.++++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~ 205 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVI 205 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 467999999999987 32 222333332 35666665
No 235
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.66 E-value=5.1e-16 Score=147.31 Aligned_cols=163 Identities=10% Similarity=0.039 Sum_probs=102.1
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.|.+++++|+.......-.+|+++++|+.++|+|+||||||||+++|+|+++ +.++|.++... + ..
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~------~-~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI------D-PA 535 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC------C-HH
Confidence 467788888886433222334677779999999999999999999999999865 33333333211 0 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h------------hhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N------------ASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~------------~~~~s~ 170 (210)
..++.++||+|++.+++. +...+.... ++..++ +.+.++++.+++.++- . -..+|+
T Consensus 536 ---~lr~~i~~v~Q~~~lf~~-TI~eNi~~~------~~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 536 ---DLRRNIGYVPQDPRLFYG-TLRDNIALG------APYADD-EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred ---HHHhccEEECCChhhhhh-hHHHHHhCC------CCCCCH-HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 223779999999988863 444443211 111122 3455566666654211 1 125777
Q ss_pred HHHh-------hccCccEEEEecCCC--CHH---HHHHhhhh--cCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPI---KMMERSIH--SARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~--R~r~~~~~~ 209 (210)
++++ ++..|+++|++|+|. |++ ..++.+.+ +++++++|-
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiIt 657 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7654 568999999999987 433 33344433 468888873
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.5e-16 Score=133.70 Aligned_cols=173 Identities=11% Similarity=0.041 Sum_probs=97.7
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|...... ..+..|.+.++|.++.. ....
T Consensus 26 ~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~-~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 26 DTQNLNLWYGEDHALKN--INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP-SVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEeeeEEEECCcceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCC-CCCCceeEEECCEEcccccccHHH
Confidence 35666666665444444 556669999999999999999999999999753100 00122333333333210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccc-hhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERS-IHSARWELTQCQICSQAL----M--YENASRWSLTFQT------ 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s-~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~------ 174 (210)
.++.++|+||++.+++. +...+.... ....+.. .......+.++++..++. . .....++|+++++
T Consensus 103 ~~~~i~~v~q~~~~~~~-tv~eni~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPK-SIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HhhhEEEEecCCccccc-cHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 23679999999866542 333322110 0011111 111223455666665432 1 2234567877654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..+.++.+ ++.++++.
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivs 223 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVT 223 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEE
Confidence 467999999999987 332 44455544 67777763
No 237
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.66 E-value=2.1e-16 Score=146.64 Aligned_cols=161 Identities=15% Similarity=0.098 Sum_probs=98.2
Q ss_pred ccCCCccccccCC-CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNH-NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
++.|++++++|+. ....+++ |+++++||.+||+|||||||||++++|++++++ .++|.++.+. + .
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~i--s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i------~-~ 398 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDI--SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI------S-L 398 (567)
T ss_pred eEEEEEEEEEcCCCCccccCc--eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc------C-H
Confidence 4778888888884 4555555 455699999999999999999999999999753 3333333211 0 2
Q ss_pred HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--------H-----HhhhhHH
Q psy6983 103 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--------Y-----ENASRWS 169 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--------~-----~~~~~~s 169 (210)
. ..++++++|+|++.+|. -+...++..+... -+.+ .+.++++..++.+ + +.-..+|
T Consensus 399 ~---~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~---at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS 467 (567)
T COG1132 399 D---SLRKRIGIVSQDPLLFS-GTIRENIALGRPD---ATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467 (567)
T ss_pred H---HHHHhccEEcccceeec-ccHHHHHhcCCCC---CCHH----HHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence 2 23378999999999886 2333333211111 1112 2222333322220 1 1123577
Q ss_pred HHHHh-------hccCccEEEEecCCC--CHHH---HHHhh--hhcCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TPIK---MMERS--IHSARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~pe~---~l~Ri--~~R~r~~~~~~ 209 (210)
++.++ ++..|+++|++|+|. |++. .++.+ ..++|++|+|-
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 77655 467999999999997 3333 33333 23668888863
No 238
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.65 E-value=2.8e-16 Score=124.85 Aligned_cols=120 Identities=11% Similarity=-0.048 Sum_probs=75.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|... +.+.++++.. .+ .. ..++.++|++|++.+++.
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~------~~-~~---~~~~~i~~~~q~~~~~~~ 90 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ------WD-PN---ELGDHVGYLPQDDELFSG 90 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc------CC-HH---HHHhheEEECCCCccccC
Confidence 567779999999999999999999999999854 3333333221 00 11 113578999999765542
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CHH------HHHH
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TPI------KMME 196 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~pe------~~l~ 196 (210)
+...+. .|..+. +.....++++..|+++|++||+. |+. ..++
T Consensus 91 -tv~~~l---------LS~G~~--------------------qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 140 (173)
T cd03246 91 -SIAENI---------LSGGQR--------------------QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred -cHHHHC---------cCHHHH--------------------HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 332221 011111 11223445678999999999987 333 4555
Q ss_pred hhhhcCceeEEee
Q psy6983 197 RSIHSARFVLVIE 209 (210)
Q Consensus 197 Ri~~R~r~~~~~~ 209 (210)
++.++++.++++.
T Consensus 141 ~~~~~~~tii~~s 153 (173)
T cd03246 141 ALKAAGATRIVIA 153 (173)
T ss_pred HHHhCCCEEEEEe
Confidence 5666678887763
No 239
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.65 E-value=2.2e-16 Score=132.40 Aligned_cols=152 Identities=13% Similarity=-0.028 Sum_probs=92.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
.+|+++++|++++|+|+||||||||+++|+|..+. .| .+.++|.++.. .....++.++|++|++.+++.++.
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G-----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SG-----SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--Ce-----EEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 36677799999999999999999999999998531 12 22222222100 001112458999998754433332
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHhh-------cc-------CccEEEEecCCC--
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQTM-------VQ-------KTMLEVHLDQPI-- 189 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~~-------~~-------~Pdl~I~Ld~~~-- 189 (210)
..+...... ......+....+.++++.+|+.+ .....++|+++++. +. .|++++++||+.
T Consensus 87 ~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 87 FQYLTLHQP--DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred HHHHHhcCc--cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 222211000 01112233456788888888863 33456788887653 33 679999999987
Q ss_pred CHH------HHHHhhhhcCceeEEee
Q psy6983 190 TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 190 ~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|++ ..+.++.++++.++++.
T Consensus 165 D~~~~~~l~~~L~~~~~~~~tvi~~s 190 (248)
T PRK03695 165 DVAQQAALDRLLSELCQQGIAVVMSS 190 (248)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 443 55666666688888764
No 240
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.65 E-value=5.4e-16 Score=127.30 Aligned_cols=145 Identities=10% Similarity=-0.029 Sum_probs=85.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-----HHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-----LMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|+..+. .|.+.++|.+... .....++.++|++|++.+++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~- 92 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL------EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN- 92 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC------CCeEEECCcccccccccccchhhcceEEEEcCCCcccc-
Confidence 67777999999999999999999999999985421 2222222222110 00112356899999986653
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh-------hccCccEEEE
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT-------MVQKTMLEVH 184 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~-------~~~~Pdl~I~ 184 (210)
.+...+..... ... .....+.++.+++... .....+|+++++ ++..|+++|+
T Consensus 93 ~t~~~nl~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 164 (218)
T cd03290 93 ATVEENITFGS----PFN----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFL 164 (218)
T ss_pred ccHHHHHhhcC----cCC----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 33333332110 001 1122334444444311 123567777654 5679999999
Q ss_pred ecCCC--CHH---H-----HHHhhhhcCceeEEee
Q psy6983 185 LDQPI--TPI---K-----MMERSIHSARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--~pe---~-----~l~Ri~~R~r~~~~~~ 209 (210)
+||+. |++ . .++.+.++++.+|++.
T Consensus 165 DEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~s 199 (218)
T cd03290 165 DDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199 (218)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 99987 444 2 3445556678887763
No 241
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.3e-16 Score=135.03 Aligned_cols=174 Identities=11% Similarity=0.050 Sum_probs=98.7
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+..... ..+..|.+.++|.++.. ...
T Consensus 40 l~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p-~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKK--VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIP-SCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEeeeEEEECCEEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC-CCCCceEEEECCEEhhhcccchH
Confidence 345666666654333333 566779999999999999999999999999742100 00122233333333211 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..++.++|++|++.+++. +...+.... ...... +....+..+.++++.+|+. .......+|+++++
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPK-SIFDNIAYG-PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HhhhcEEEECCCCCCCcc-CHHHHHHhH-HHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 123579999999866542 332222110 001111 1122234566777777763 12334578887754
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++|++. |++ .+++++.. ++.++++.
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivs 238 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVT 238 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 467999999999987 333 23444433 56777763
No 242
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.6e-16 Score=133.85 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=98.2
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|+...... ....|.+.++|.++.. ....
T Consensus 9 ~~~~l~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~-~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 9 KVKDLSFYYNTSKAIEG--ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP-VKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEEEEEECCeEeecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccC-CccceEEEECCEeccccccchHh
Confidence 34566666654333444 5566799999999999999999999999997542100 0012223333332210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL------MYENASRWSLTFQT------- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------- 174 (210)
.++.++|++|++.+++ .+...+...........+..+....+.++++.+|+. ......++|+++++
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2357899999987665 444333211000000011223334566778888763 11233567777654
Q ss_pred hccCccEEEEecCCC--CH---H---HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TP---I---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~p---e---~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+ + ..+.++.+ ++.++++.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~t 206 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVT 206 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 467999999999987 32 2 33444433 57777663
No 243
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.65 E-value=4.4e-16 Score=148.03 Aligned_cols=166 Identities=11% Similarity=-0.037 Sum_probs=101.4
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
++.|.+++++|+... ...-.+|+++++|+.++|+|+||||||||+++|+|++++ ..|.+.++|.++.. ....
T Consensus 473 ~I~~~~vsf~y~~~~-~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p------~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGYGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA------RSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCCCC-cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------CCcEEEECCEEHHHcCHHH
Confidence 466788888876322 222346777899999999999999999999999998643 22233333333211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~ 174 (210)
.++.++||+|++.+++. +...+..... .+..++ +.+.++++..++.++ ..-..+|+++++
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~-----~~~~~~-~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGA-----KENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccC-----CCCCCH-HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 23679999999988764 4444432210 111112 234555555555411 011247777654
Q ss_pred -------hccCccEEEEecCCC--CH---HHHHHhhhh-cCceeEEe
Q psy6983 175 -------MVQKTMLEVHLDQPI--TP---IKMMERSIH-SARFVLVI 208 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~-R~r~~~~~ 208 (210)
++.+|+++|++|+|. |+ +..++.+.+ +++++++|
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~Iii 665 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV 665 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999987 33 334455554 46888776
No 244
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.1e-16 Score=130.73 Aligned_cols=172 Identities=14% Similarity=0.057 Sum_probs=98.2
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHH---HHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLAL---MYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~ 108 (210)
+.+++++++....+++ +|+++.+|++++|+|+||||||||+++|+|...... ..+..|.+.++|.++... ....
T Consensus 8 ~~~l~~~~~~~~~l~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 8 VKNLNLWYGSKQILFD--INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP-NCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeEEEEECCeeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC-CCCcceEEEECCEehHhcccchHHH
Confidence 3445545543333333 566679999999999999999999999999853100 001233333444333110 0112
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc--chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER--SIHSARWELTQCQICSQALM------YENASRWSLTFQT------ 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~--s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------ 174 (210)
++.++|+||++.+++. +...+.... ....+. ...+....+.++++.+|+.. ......+|+++++
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYG-PKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 3578999999866542 322222110 001111 11222345677888888742 1234567777654
Q ss_pred -hccCccEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+ ...+.++. +++.++++.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiis 205 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVT 205 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 467999999999987 22 23444443 477777763
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.65 E-value=4.8e-16 Score=123.95 Aligned_cols=127 Identities=13% Similarity=0.028 Sum_probs=75.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+|++++|+|+||||||||+++|+|.... ..+.+.++|.+........++.++|++|++.+++ .+...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~------~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 93 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP------QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRN 93 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC------CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHH
Confidence 6677799999999999999999999999998543 2233334443332111122356899999876543 23222
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--C---HHHHHHhhhh--cC
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--T---PIKMMERSIH--SA 202 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~---pe~~l~Ri~~--R~ 202 (210)
+. ....|..+ .+.....++++..|+++|++||+. | .+.+++.+.+ ++
T Consensus 94 ~i------~~~LS~G~--------------------~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 147 (178)
T cd03247 94 NL------GRRFSGGE--------------------RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147 (178)
T ss_pred hh------cccCCHHH--------------------HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 21 00001111 011223445678999999999987 3 3333444433 47
Q ss_pred ceeEEee
Q psy6983 203 RFVLVIE 209 (210)
Q Consensus 203 r~~~~~~ 209 (210)
+.++++.
T Consensus 148 ~tii~~s 154 (178)
T cd03247 148 KTLIWIT 154 (178)
T ss_pred CEEEEEe
Confidence 7777763
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.65 E-value=2e-16 Score=132.53 Aligned_cols=172 Identities=15% Similarity=-0.009 Sum_probs=96.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH--HHHhcc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA--LMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~ 109 (210)
+.++++.++....+.+ +|+++++|++++|+|+||||||||+++|+|+... .+..|.+.++|.++.. ......
T Consensus 10 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~----~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 10 IKNLHASVNENEILKG--LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY----KILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred EEeEEEEeCCEEeeec--ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC----cCCCceEEECCEEcccCChhhhhe
Confidence 4555555543333333 5666799999999999999999999999996210 0112222222222110 000111
Q ss_pred cceeeeehhhHhhhHHHHHHcC---CCCcccc---cccchhhhHHHHHHHHHHcchh-hH--Hhhh-hHHHHHHh-----
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQ---PITPIKM---MERSIHSARWELTQCQICSQAL-MY--ENAS-RWSLTFQT----- 174 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~---~~~~~~~---~~~s~~e~~~~~~~~L~~~gl~-~~--~~~~-~~s~~~~~----- 174 (210)
..+++++|++.+++..+..... ....... .+....+....+.++++.+|+. .+ ..+. .+|+++++
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 2478999997665433222211 0000000 0001112234567788888885 22 2333 48887754
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ .++.++.++++.++++.
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~t 208 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIT 208 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 333 33445555688888774
No 247
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=1.4e-16 Score=123.26 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=91.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC--cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD--ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~--i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
+|+++.+||++.|+||||||||||+.-+.|.+. ..+.|+-.- +++.+ ...-..++++|+.||++.+||++++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l-----~~~~l-~~lPa~qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL-----NEQRL-DMLPAAQRQIGILFQDALLFPHLSV 94 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE-----CCeec-cccchhhhheeeeeccccccccccc
Confidence 788999999999999999999999999999864 333344322 22221 1112344789999999999999998
Q ss_pred HHcCCCCcc-cccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC
Q psy6983 128 HLDQPITPI-KMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI 189 (210)
Q Consensus 128 ~~~~~~~~~-~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~ 189 (210)
..+...... .+ .....+..+..+|++.|+. ...++..+|++.++ ++..|.+++.+|+..
T Consensus 95 g~Nl~fAlp~~~---KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 95 GQNLLFALPATL---KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccceEEecCccc---ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 777632211 11 1123344567789999998 56677888987655 457999976666644
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.65 E-value=2.7e-16 Score=129.94 Aligned_cols=175 Identities=10% Similarity=-0.034 Sum_probs=101.2
Q ss_pred ccccccccccccc---cccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccc
Q psy6983 15 ALFKCFPSQLHIL---LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVN 91 (210)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~ 91 (210)
|+.|.||..-+-+ ..+..+++++.|+.....+++ |+++++|++++|+||||||||||+++|+|...+ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~il~~v--s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p------~~ 76 (224)
T cd03220 5 NVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDV--SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP------DS 76 (224)
T ss_pred ecceeccccccCcchhhhhhhhhhhhhcCCeEEEeee--EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC------Cc
Confidence 4567777432211 124567777778776555555 555699999999999999999999999998543 22
Q ss_pred ccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHH
Q psy6983 92 LWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWS 169 (210)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s 169 (210)
+.+.++|.+... . ....++.++ .+..+++... ....+....+.+..+.++++.+|+.+ .....++|
T Consensus 77 G~i~~~g~~~~~--~--~~~~~~~~~----~tv~enl~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 144 (224)
T cd03220 77 GTVTVRGRVSSL--L--GLGGGFNPE----LTGRENIYLN----GRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYS 144 (224)
T ss_pred eEEEECCEEchh--h--cccccCCCC----CcHHHHHHHH----HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCC
Confidence 223333322110 0 011122111 1111221111 00011122233345677888888762 33346788
Q ss_pred HHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+++++ ++..|+++|++||+. |++ ..++++.++++.++++.
T Consensus 145 gG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~s 199 (224)
T cd03220 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS 199 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 87654 467999999999987 443 35555556678888763
No 249
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.65 E-value=5.6e-16 Score=147.45 Aligned_cols=167 Identities=16% Similarity=0.017 Sum_probs=101.3
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMY 106 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~ 106 (210)
.+.|++++++|+... ....-.+|+++++||.++|+||||||||||+++|+|++++ ..|.+.++|.++.+ ...
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p------~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP------TGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC------CCCEEEECCEEHHhcCHH
Confidence 466788888876432 2223346777899999999999999999999999998653 22233333333211 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-----h--------hhHHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-----A--------SRWSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-----~--------~~~s~~~~ 173 (210)
..+++++|++|++.+++. +...+...+ ....++ +.+.++++.+++.++-. + .++|++.+
T Consensus 552 ~lr~~i~~v~Q~~~lF~g-TIreNI~~g------~~~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSG-SVRENIAYG------LTDTPD-EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred HHHhhceEEecCcccccc-CHHHHHhcC------CCCCCH-HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 223679999999988753 333332211 111112 34556666666642110 1 25777765
Q ss_pred h-------hccCccEEEEecCCC--CHH--H-HHHhhhhcCceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TPI--K-MMERSIHSARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~pe--~-~l~Ri~~R~r~~~~~~ 209 (210)
+ ++.+|+++|++|+|. |++ . ..+....++|++++|-
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiIt 671 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIA 671 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEe
Confidence 5 468999999999987 332 2 2222334678888763
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.65 E-value=4.9e-16 Score=129.79 Aligned_cols=171 Identities=12% Similarity=-0.023 Sum_probs=94.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhccc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENAS 110 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 110 (210)
.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+... .+..|.+.++|.+.. ......+.
T Consensus 5 ~nl~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 5 KDLHVSVEDKAILRG--LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDY----EVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred EEEEEEeCCeeeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccC----CCCceEEEECCCccccCCHHHHhhc
Confidence 344444443333333 5666799999999999999999999999998420 011222223332221 00111124
Q ss_pred ceeeeehhhHhhhHHHHHHc---CCCCcccccc---cchhhhHHHHHHHHHHcchh-hHHh--h-hhHHHHHHh------
Q psy6983 111 RWSLTFQTMVQKTMLEVHLD---QPITPIKMME---RSIHSARWELTQCQICSQAL-MYEN--A-SRWSLTFQT------ 174 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~---~~~~~~~~~~---~s~~e~~~~~~~~L~~~gl~-~~~~--~-~~~s~~~~~------ 174 (210)
.++|++|++.+++.++.... .......... ....+....+.+.++.+++. .+.. . .++|+++++
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 68999999765543322111 0000000000 01112223456677777774 2111 2 257877654
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..++++.++++.++++.
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~s 202 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 332 33345556678888763
No 251
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.6e-16 Score=130.92 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=98.1
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++.....++ +|+++.+|++++|+|+||||||||+++|+|+.+... ..+..|.+.++|.++.. .....
T Consensus 6 ~~~v~~~~~~~~~l~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAHILKN--VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP-GFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCC-CCCCccEEEECCEEcccccccHHHH
Confidence 4455555543223333 567779999999999999999999999999743100 00112223333333211 11122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++. +...+.... ....+. ........+.++++.+|+.+ ......+|+++++
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 160 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYG-LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhH-HhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 3679999999876653 433333211 011111 11223345677888887641 1223467777644
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++|++. |+. .++.++. +++.++++.
T Consensus 161 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~s 202 (250)
T PRK14266 161 IAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVT 202 (250)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 467999999999987 333 3444443 477777763
No 252
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.65 E-value=3.6e-16 Score=131.44 Aligned_cols=169 Identities=9% Similarity=-0.012 Sum_probs=99.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+.++++++ .....+ .+|+++.+|++++|+|+||||||||+++|+|+..... .+..|.+.++|.++.. .....+.
T Consensus 7 ~~~l~~~~-~~~il~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--~~~~G~i~~~g~~i~~-~~~~~~~ 80 (254)
T PRK10418 7 LRNIALQA-AQPLVH--GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV--RQTAGRVLLDGKPVAP-CALRGRK 80 (254)
T ss_pred EeCeEEEe-ccceec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CCcCCEEEECCeeccc-cccccce
Confidence 45555555 222233 3667779999999999999999999999999864310 1123333344433211 0111256
Q ss_pred eeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-----HHhhhhHHHHHHh-------hcc
Q psy6983 112 WSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-----YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 112 ~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-----~~~~~~~s~~~~~-------~~~ 177 (210)
++|+||++. +.+..+...+.... ....... . ....+.++++.+++.. ...+.++|+++++ ++.
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARET-CLALGKP-A-DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHH-HHHcCCC-h-HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 899999963 22222221111000 0011111 1 2245778888888863 2334578887654 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
.|+++|++||+. |++ .+++++.+ +|+.++++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 999999999987 443 44555544 478888874
No 253
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.8e-16 Score=131.51 Aligned_cols=174 Identities=14% Similarity=0.067 Sum_probs=101.1
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+.... ...+..|.+.++|.++.. ...
T Consensus 26 l~~~nl~~~~~~~~il~~--vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~-~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFD--ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV-DNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred EEEEEEEEEECCeeEeee--EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCc-cCCCCceEEEECCEECcccccCHH
Confidence 445667766654433444 56667999999999999999999999999985420 000122333333332210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALM------YENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~----- 174 (210)
..++.++|++|++.+++. +...+.... ...... ...+....+.++++.+++.. .....++|+++++
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYG-LRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 123678999999766553 333322110 011111 11222345667777777641 2234567877654
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ ..+.++.+ ++.++++.
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivt 224 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVT 224 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 567999999999987 443 44555544 67777763
No 254
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.64 E-value=5.9e-16 Score=144.16 Aligned_cols=164 Identities=12% Similarity=-0.018 Sum_probs=97.5
Q ss_pred ccCCCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHH
Q psy6983 29 SVPFCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMY 106 (210)
Q Consensus 29 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~ 106 (210)
++.|+++++.+. ....++ .+|+++++|+.+||+||||||||||+++|+|++ +. .| .+.++|.++.+ ...
T Consensus 349 ~i~~~~vsf~~~~~~~vL~--~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G-----~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAG--PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QG-----SLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccCCCeeee--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-Cc-----EEEECCEecccCCHH
Confidence 466677764332 222333 367777999999999999999999999999986 21 22 22223322210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--------Hh-----hhhHHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--------EN-----ASRWSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--------~~-----~~~~s~~~~ 173 (210)
..++.++||+|++.+|+. +...+.... ++..++ +.+.++++..++.++ .. =..+|++.+
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g------~~~~~~-eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLG------NPDASD-EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcC------CCCCCH-HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 223689999999988763 333333211 111112 334555565555411 11 124788765
Q ss_pred h-------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~~ 209 (210)
+ ++..|+++|++|+|. |+ +..++.+.+ ++|++++|-
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiIt 541 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT 541 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5 468999999999987 33 233344433 578888873
No 255
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.7e-16 Score=140.57 Aligned_cols=173 Identities=9% Similarity=-0.007 Sum_probs=103.6
Q ss_pred cCCCccccccCC---CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HH
Q psy6983 30 VPFCFLCASQNH---NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--AL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~ 104 (210)
+.+.+++++++. ....++ +|+++++|++++|+|+||||||||+|+|+|+.... ..|.+.++|.++. ..
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-----~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDD--VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-----WEGEIFIDGKPVKIRNP 332 (506)
T ss_pred EEEecCccccccccccccccc--eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-----CCcEEEECCEECCCCCH
Confidence 345666666632 223333 57778999999999999999999999999985421 1112222221110 00
Q ss_pred HHhcccceeeeehhhH---hhhHHHHHHcCCCCcc-cccc---cchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh
Q psy6983 105 MYENASRWSLTFQTMV---QKTMLEVHLDQPITPI-KMME---RSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~---l~~~~~~~~~~~~~~~-~~~~---~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~ 174 (210)
....++.++|++|++. +++.++...+...... .... ....+.+..+.++++.+++. . ...+.++|+++++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 0111256899999852 4433333333321100 0100 01223445678899999984 2 3445789998865
Q ss_pred -------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+. ..++.+.++|+.++++.
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 457999999999987 443 24555667788888874
No 256
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2.3e-16 Score=128.40 Aligned_cols=152 Identities=13% Similarity=-0.004 Sum_probs=84.5
Q ss_pred CCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 32 FCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.++++.|... .....-.+|+++.+|++++|+||||||||||+++|+|..... .+..+.+.++|.+........+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN---VSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC---CCcceEEEECCEECccchhhhc
Confidence 45555555432 111223367788999999999999999999999999986410 0122333333333211111223
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHH-------HhhccCccEE
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTF-------QTMVQKTMLE 182 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~-------~~~~~~Pdl~ 182 (210)
+.++|++|+..+++.++...+..... .. . ....+.++|+++ ++++..|+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~-~~----------------~-----~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL-RC----------------K-----GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh-hh----------------c-----cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 57899999876554433333221000 00 0 011223444444 4467899999
Q ss_pred EEecCCC--CH------HHHHHhhhhc-CceeEEe
Q psy6983 183 VHLDQPI--TP------IKMMERSIHS-ARFVLVI 208 (210)
Q Consensus 183 I~Ld~~~--~p------e~~l~Ri~~R-~r~~~~~ 208 (210)
+++||+. |+ ..+++++.++ ++.++++
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999987 32 3344444443 5555553
No 257
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.64 E-value=2.7e-16 Score=161.21 Aligned_cols=169 Identities=14% Similarity=0.049 Sum_probs=107.7
Q ss_pred CCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 32 FCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+++++|+.. .++++ +|+.+++||+++|+||||||||||+|+|+|...+. .|.+.++|.++.....+.+
T Consensus 1940 v~nLsK~Y~~~~~~aL~~--ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt------sG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDR--LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT------SGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred EEEEEEEECCCCceEEEe--eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC------ccEEEECCEECcchHHHHh
Confidence 45566666542 34444 56667999999999999999999999999985421 2222233332211111233
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH--hhhhHHHHHHh-------hccCcc
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE--NASRWSLTFQT-------MVQKTM 180 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~--~~~~~s~~~~~-------~~~~Pd 180 (210)
+.+||++|+..+++.++...+... ...+.+.+..+.+.++.++++.+|+.++. ...++|+++++ ++..|+
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l-~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYL-YARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 679999999876554433332210 01112223334445677889999997443 35678888765 468999
Q ss_pred EEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 181 LEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 181 l~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+++++||+. ||. ..++++.++|+.++++.
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtT 2127 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999999988 554 34567777788888763
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.3e-16 Score=124.96 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=75.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHH---HHhcccceeeeehhhHhhhHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLAL---MYENASRWSLTFQTMVQKTMLE 126 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~vfQ~~~l~~~~~ 126 (210)
+|+++++|++++|+||||||||||+++|+|..... .+.+.++|.++... ....++.++|++|++.+++..+
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD------SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT 92 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence 56777999999999999999999999999985421 22222222221100 1122367899999876554333
Q ss_pred HHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CHH------HHHHhh
Q psy6983 127 VHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TPI------KMMERS 198 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~pe------~~l~Ri 198 (210)
...+.... .|..+. +.....++++..|+++|.+||+. |+. ..++.+
T Consensus 93 ~~~~l~~~------lS~G~~--------------------qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 93 VLENIALG------LSGGQQ--------------------QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred HHHheeec------CCHHHH--------------------HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 33222100 011111 11112344678999999999987 333 344455
Q ss_pred hhc-CceeEEee
Q psy6983 199 IHS-ARFVLVIE 209 (210)
Q Consensus 199 ~~R-~r~~~~~~ 209 (210)
.+. ++.++++.
T Consensus 147 ~~~~~~tiii~s 158 (178)
T cd03229 147 QAQLGITVVLVT 158 (178)
T ss_pred HHhcCCEEEEEe
Confidence 555 78887763
No 259
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.63 E-value=1.3e-15 Score=141.20 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=103.3
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.+++++++++.......-.+|+++++|+.++|+|+||||||||+++|+|+++ +.+++.++... + ..
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~------~-~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY------T-LA 402 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc------C-HH
Confidence 477888888876543323334777789999999999999999999999999864 33333333211 0 11
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-Hh------------hhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-EN------------ASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~~------------~~~~s~ 170 (210)
. .++.++|++|++.+++. +...+.... .....+.+...++++.+|+.++ .. -..+|+
T Consensus 403 ~---~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~------~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 403 S---LRRQVALVSQDVVLFND-TIANNIAYG------RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred H---HHhhceEEccCcccccc-cHHHHHhcC------CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 1 23679999999988753 333332111 1101122346667777777521 11 124788
Q ss_pred HHHh-------hccCccEEEEecCCC-----CHHHHHHhhhh--cCceeEEe
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIH--SARFVLVI 208 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~--R~r~~~~~ 208 (210)
+.++ ++..|++++++|++. +.+..++.+.+ .++.+++|
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIii 524 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 7755 467999999999987 33445555555 36788776
No 260
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=123.59 Aligned_cols=129 Identities=19% Similarity=0.067 Sum_probs=89.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
++++++......+..++ ++.++||+.+|+||||||||||+|.|.|... +.+++.+...|.. . +
T Consensus 5 ~nls~~~~Gr~ll~~vs--l~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~-------~---~ 72 (259)
T COG4559 5 ENLSYSLAGRRLLDGVS--LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP-------E---E 72 (259)
T ss_pred eeeEEEeecceeccCcc--eeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCH-------H---H
Confidence 56666666665665554 5569999999999999999999999999854 4444444443321 1 1
Q ss_pred cccceeeeehhhH---hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh
Q psy6983 108 NASRWSLTFQTMV---QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM 175 (210)
Q Consensus 108 ~~~~~~~vfQ~~~---l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~ 175 (210)
..++-+..+|+.. .|+..+++..+..+.. ..+...++..+++++|..+++. .-+.|..+|++.+++
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~--~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQR 143 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR--SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQR 143 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccc--cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHH
Confidence 1233478888864 4677787777643211 1233346667889999999998 677899999998775
No 261
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.5e-16 Score=131.13 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=93.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH---HHHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL---ALMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l---~~~~~~ 108 (210)
+.+++++++....+++ +|+++.+|++++|+|+||||||||+++|+|..+... ..+..|.+.++|.++. ......
T Consensus 8 ~~~l~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 8 SSDVHLFYGKFEALKG--IDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIP-GVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEeEEEEECCeeEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCC-CCCcccEEEEcCEEcccccccHHHh
Confidence 3445555543333333 566679999999999999999999999999743100 0001222333333221 001122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh-------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL----M--YENASRWSLTFQT------- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~------- 174 (210)
++.++|++|++.+++ .+...+.... ....+. ........+.+.++.+++. . .....++|+++++
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYG-LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 357899999976654 2333222110 000111 1111123455667777653 1 1234567877654
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|++++++||+. |+. ..+.++.+ +..++++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~v 203 (252)
T PRK14255 163 LAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILV 203 (252)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEE
Confidence 467999999999987 333 33444433 4666665
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=9.8e-16 Score=127.06 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=82.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++.+|++++|+||||||||||+++|+|+... ..|.+.++|.++.. .....++.++|++|++.+++ .+..
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~------~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV------SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIG 92 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC------CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHH
Confidence 5666799999999999999999999999998542 12222222322211 01112256899999987664 3444
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchh-------------hHHhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQAL-------------MYENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-------------~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.+...... ..... .+.+.+...++. .......+|+++++ ++..|+++|++||+
T Consensus 93 ~nl~~~~~---~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 93 YNIRYGRP---DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHHhhcCC---CCCHH----HHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 33321110 11111 122223333322 11123467776644 56899999999998
Q ss_pred C--CHH------HHHHhhhhcCceeEEee
Q psy6983 189 I--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 189 ~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
. |++ .++.++.+ ++.++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~-~~tiii~s 193 (236)
T cd03253 166 SALDTHTEREIQAALRDVSK-GRTTIVIA 193 (236)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence 7 333 33444444 77777763
No 263
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.1e-16 Score=131.61 Aligned_cols=171 Identities=11% Similarity=0.007 Sum_probs=96.7
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.+... +.+..+.+.++|.++.. .....
T Consensus 23 ~~nl~~~~~~~~~l~~--vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 23 VEGVKVFYGGFLALVD--VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIP-GAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EeeEEEEeCCeEEEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccccc-CCCcCceEEECCEecccccchhHHH
Confidence 5666666654333333 566779999999999999999999999999854210 00012223333333210 11122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh-------h
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL----M--YENASRWSLTFQT-------M 175 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~-------~ 175 (210)
++.++|+||++.+++. +...+..... ...... ......+.++++.+++. + .....++|+++++ +
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAP-RANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHH-HhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 3679999999766542 3333221110 000011 11223355666766653 1 1233567777654 5
Q ss_pred ccCccEEEEecCCC--CH---H---HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TP---I---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~p---e---~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. |+ + ..+.++.+ ++.++++.
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~s 217 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVT 217 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 67999999999987 32 2 34444433 67777763
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.63 E-value=5.5e-16 Score=142.57 Aligned_cols=170 Identities=11% Similarity=-0.007 Sum_probs=102.2
Q ss_pred cCCCccccccCC-----CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccccccc-Ccc---
Q psy6983 30 VPFCFLCASQNH-----NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVK-GHN--- 100 (210)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~-~~~--- 100 (210)
+.+.+++++|+. ...+++ +|+++.+|++++|+||||||||||+++|+|+.... .|.+.++ |.+
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~------~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDN--VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT------SGEVNVRVGDEWVD 351 (520)
T ss_pred EEEeccEEEeccCCCCCceEEee--EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CeEEEEecCCcccc
Confidence 345666666642 122333 67777999999999999999999999999986421 1122221 110
Q ss_pred h--H--HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-------HHhhhhHH
Q psy6983 101 L--L--ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-------YENASRWS 169 (210)
Q Consensus 101 ~--l--~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-------~~~~~~~s 169 (210)
+ . ......+++++|++|++.+++.++...+.... ... ..+..+....+.++++.+|+.. ...+.++|
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA-IGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHH-HHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 0 0 00011125689999997665544433332110 000 1122223346778899999852 34456899
Q ss_pred HHHHh-------hccCccEEEEecCCC--CH------HHHHHhhhh-cCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TP------IKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~-R~r~~~~~~ 209 (210)
+++++ ++..|+++|++||+. |+ ...+.++.+ +|..++++.
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 485 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 98865 457999999999987 33 233444434 488888874
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.63 E-value=1.1e-15 Score=139.97 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=103.5
Q ss_pred CCCccccccC---CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHH
Q psy6983 31 PFCFLCASQN---HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALM 105 (210)
Q Consensus 31 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~ 105 (210)
.+.+++++++ ....+++ +|+++.+|++++|+||||||||||+++|+|+.... ..|.+.++|.++. ...
T Consensus 259 ~~~~l~~~~~~~~~~~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-----~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 259 EARNLTCWDVINPHRKRVDD--VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-----FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred EEeCCccccccccccccccc--ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-----CCeEEEECCEECCCCCHH
Confidence 3556665552 2233333 56777999999999999999999999999985421 1122222222110 001
Q ss_pred Hhcccceeeeehhh---HhhhHHHHHHcCCCCcc-ccc---ccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-
Q psy6983 106 YENASRWSLTFQTM---VQKTMLEVHLDQPITPI-KMM---ERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~---~l~~~~~~~~~~~~~~~-~~~---~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~- 174 (210)
...+++++|++|++ .+++.++...+...... ... .....+.+..+.++++.+++. . ...+.++|+++++
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 11235789999996 35544333333221110 010 111223345678899999985 2 3445688998865
Q ss_pred ------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++.+||+. |+. .+++.+.++|+.++++.
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 357999999999987 443 23456667788888874
No 266
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.63 E-value=3e-15 Score=126.30 Aligned_cols=148 Identities=13% Similarity=0.034 Sum_probs=91.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccc-cccc-----cccCcchHHH---HHhcccceeeeehhhHhhhH
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPV-NLWR-----DVKGHNLLAL---MYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~-~~~~-----~~~~~~~l~~---~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+.+|++++|+||||||||||+++|+|+.... .|+.. .+.. .+.|.++... .......+++++|+..+++.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch
Confidence 7999999999999999999999999986532 12210 0000 1334433221 11112346888888655542
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI- 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe- 192 (210)
......... . ...+....+.++++.+|+.. .....++|+++++ ++..|++++++|++. |++
T Consensus 102 -~~~~~i~~~----l--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~ 174 (255)
T cd03236 102 -AVKGKVGEL----L--KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174 (255)
T ss_pred -HHHHHHHHH----h--chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 111111100 0 11223345778888888863 3344567777654 457999999999987 555
Q ss_pred -----HHHHhhhhcCceeEEee
Q psy6983 193 -----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 -----~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++++.++++.
T Consensus 175 ~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 175 RLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEE
Confidence 56677777788888874
No 267
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.1e-16 Score=134.53 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=102.2
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.++++++........-.+|+++++|++++|+|+||||||||+++|+|+.... .+.+..|.+.++|.++.. ...
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~-~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI-EGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-CCCCCceEEEECCEEccccccchH
Confidence 4466777766532222233366777999999999999999999999999985421 011233444444444321 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhh-hHHHHHHHHHHcchh------hHHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHS-ARWELTQCQICSQAL------MYENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e-~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~----- 174 (210)
..++.++|+||++.+++ .+...+..... .....+..+ ....+.++++.+++. .......+|+++++
T Consensus 160 ~lr~~i~~v~q~~~~~~-~ti~eNi~~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFE-MSIFDNVAYGP-RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hhhccEEEEecCCccCC-CcHHHHHHhHH-HhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 22367999999987653 23333321111 011111111 122356677777763 12334567877654
Q ss_pred --hccCccEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++|++. |+ ..+++.+. +++++++|.
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iT 281 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVT 281 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467999999999987 33 33444444 367877763
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-15 Score=129.47 Aligned_cols=174 Identities=14% Similarity=0.039 Sum_probs=98.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH-----HH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL-----AL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l-----~~ 104 (210)
+.+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+..+. .+.+..+.+.++|.+.. ..
T Consensus 17 l~~~~l~~~~~~~~vl~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKN--INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY-PGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred EEEEEEEEEECCeeeeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC-CCCCcccEEEEcCccccccccccC
Confidence 445667766654333334 56667999999999999999999999999985421 00011222223222210 00
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccch-hhhHHHHHHHHHHcchh----h--HHhhhhHHHHHHh---
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSI-HSARWELTQCQICSQAL----M--YENASRWSLTFQT--- 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~-~e~~~~~~~~L~~~gl~----~--~~~~~~~s~~~~~--- 174 (210)
....++.++|++|++.+++. +...+.... ........ ......+.++++.+++. . -....++|+++++
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYG-LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhH-HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 11223578999999766543 333322110 00111111 11224566677777653 1 1224467776644
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |++ ..+.++.+ ++.++++.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivt 217 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVT 217 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEe
Confidence 567999999999987 332 44555543 57777764
No 269
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=3.8e-16 Score=160.07 Aligned_cols=171 Identities=16% Similarity=0.052 Sum_probs=110.0
Q ss_pred ccCCCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHH
Q psy6983 29 SVPFCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 29 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
.+.+.+++.+++. ...+++ +|+++.+||+++|+||||||||||+++|+|+..+ ..|.+.++|.++.....
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~--lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P------tsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDR--LNITFYENQITAFLGHNGAGKTTTLSILTGLLPP------TSGTVLVGGKDIETNLD 999 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEe--eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC------CceEEEECCEECcchHH
Confidence 3446777777742 233344 5666799999999999999999999999998642 12222233332211112
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hcc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~ 177 (210)
..++.+|+++|++.+++.+++..+.... ......+..+.++.+.++++.+|+.+ .....++|+++++ ++.
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~-~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFY-AQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 2346799999998776655444433110 11112222344456788999999973 3446789998865 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
.|++++.+||+. ||. ..+++++ +||.++++.
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltT 1117 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMST 1117 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 999999999987 444 4456664 588888764
No 270
>KOG0061|consensus
Probab=99.63 E-value=3.9e-16 Score=146.05 Aligned_cols=174 Identities=15% Similarity=0.021 Sum_probs=119.0
Q ss_pred ccCCCccccccCCCC---CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHH
Q psy6983 29 SVPFCFLCASQNHNS---TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.|.+.+++..... ..-.-.+|+..++||++||+||||||||||+++|+|...- +-.+.|.+.+||+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~---~~~~~G~ilvNG~~~~~~- 100 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG---GLKLSGEILLNGRPRDSR- 100 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC---CCcceEEEEECCccCchh-
Confidence 344677776655542 2222338888899999999999999999999999997532 123444555555332221
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcc-ccc-ccchhhhHHHHHHHHHHcchh--hHHhh-----hhHHHHHHh--
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPI-KMM-ERSIHSARWELTQCQICSQAL--MYENA-----SRWSLTFQT-- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-~~~-~~s~~e~~~~~~~~L~~~gl~--~~~~~-----~~~s~~~~~-- 174 (210)
..++..|||.|+..+++.+++.+....... +.- ..+..+.+.++++++.+.|+. ..... .-+|++.+.
T Consensus 101 -~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 101 -SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred -hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 222567999999988887776555422111 111 125677778999999999997 11111 236666654
Q ss_pred -----hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEE
Q psy6983 175 -----MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLV 207 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~ 207 (210)
++..|.+++.+|||. .....++++++.||.|+.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVIC 225 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEE
Confidence 467999999999986 677889999999999985
No 271
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=6.5e-17 Score=130.06 Aligned_cols=165 Identities=13% Similarity=-0.018 Sum_probs=112.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
+++..+|+....+++++ +++++||++++.|||||||||.+.++.|+. .+.+++.+++. ++.+.+
T Consensus 8 ~~l~K~y~kr~Vv~~Vs--l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~---------lPm~~R 76 (243)
T COG1137 8 ENLAKSYKKRKVVNDVS--LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK---------LPMHKR 76 (243)
T ss_pred hhhhHhhCCeeeeeeee--EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccccc---------CChHHH
Confidence 56666666666666654 556999999999999999999999999984 24444555442 344455
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCccccc--ccchhhhHHHHHHHHHHcchhhHH--hhhhHHHHH-------Hhhc
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMM--ERSIHSARWELTQCQICSQALMYE--NASRWSLTF-------QTMV 176 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~--~~s~~e~~~~~~~~L~~~gl~~~~--~~~~~s~~~-------~~~~ 176 (210)
.+..+||.+|++..|-.+++..+... ...+. +....+.+....++|+++.+...+ .-..+|++. ++++
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~-vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMA-VLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHH-HHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 55678999999988766665554421 01111 223334445677899999887332 334577765 4567
Q ss_pred cCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
..|..++++||.. +-+..+..++.||--|+|-+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITD 196 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD 196 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcc
Confidence 8999988777765 55677888899998877644
No 272
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.62 E-value=9.7e-16 Score=142.90 Aligned_cols=164 Identities=12% Similarity=0.007 Sum_probs=100.9
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
++.|.+++++|+... ...-.+|+++++|+.++|+|+||||||||+++|+|++++. .|.+.++|.++-. ....
T Consensus 340 ~i~~~~v~f~y~~~~-~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~------~G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRDDN-LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT------EGEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCCCC-ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC------CceEEECCEEhhhCCHHH
Confidence 466777777775421 1223467778999999999999999999999999986531 2222333332211 1112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h------------hhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N------------ASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~------------~~~~s~~~~~ 174 (210)
.+++++|++|++.+|+. +...+.... + . .++ +.+.++++.+|+.++- . -..+|++.++
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~-----~-~-~~d-~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLG-----R-D-ISE-EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhC-----C-C-CCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 23789999999988764 333333111 1 1 122 3456677777765211 1 1247777644
Q ss_pred -------hccCccEEEEecCCC--CHH---HHHHhhhh--cCceeEEe
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPI---KMMERSIH--SARFVLVI 208 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~--R~r~~~~~ 208 (210)
++..|+++|++|++. |++ ...+.+.+ +++++++|
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIiv 531 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVI 531 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 568999999999987 333 23344543 46788776
No 273
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.62 E-value=8e-16 Score=124.99 Aligned_cols=126 Identities=16% Similarity=0.025 Sum_probs=75.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHhcccceeeeehhhHhhhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
+|+++++|++++|+|+||||||||+++|+|.... .+..+.+.++|.++. ......+..++|++|++.+++..+.
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY----EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN 94 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcC----CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH
Confidence 5667799999999999999999999999997310 112222222332211 0011112458999999766543221
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHH-------HhhccCccEEEEecCCC--C------HH
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTF-------QTMVQKTMLEVHLDQPI--T------PI 192 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~-------~~~~~~Pdl~I~Ld~~~--~------pe 192 (210)
.... .. ...++|+++ ++++..|++++++||+. | ..
T Consensus 95 ~~~l-----------------------~~-------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 144 (200)
T cd03217 95 ADFL-----------------------RY-------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA 144 (200)
T ss_pred HHHH-----------------------hh-------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 1110 00 012344443 34578999999999987 3 23
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
.++.++.++++.++++.
T Consensus 145 ~~L~~~~~~~~tiii~s 161 (200)
T cd03217 145 EVINKLREEGKSVLIIT 161 (200)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 55666666788888763
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=5.7e-16 Score=142.82 Aligned_cols=159 Identities=9% Similarity=-0.061 Sum_probs=97.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++++.....++ +|+++.+|++++|+||||||||||+|+|+|+... ..|.+.+++ ...+
T Consensus 5 ~~ls~~~~~~~il~~--vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p------~~G~i~~~~----------~~~i 66 (530)
T PRK15064 5 ANITMQFGAKPLFEN--ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP------SAGNVSLDP----------NERL 66 (530)
T ss_pred EEEEEEeCCcEeEeC--CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEecC----------CCEE
Confidence 444555544333333 5566799999999999999999999999998643 223222222 1458
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcc----------cccc---------------------cchhhhHHHHHHHHHHcchhh
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPI----------KMME---------------------RSIHSARWELTQCQICSQALM 161 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~----------~~~~---------------------~s~~e~~~~~~~~L~~~gl~~ 161 (210)
+|++|++.+++.++...+...... .+.. ....+...++.++++.+|+..
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 146 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE 146 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence 999998654322211111100000 0000 000122345778899999863
Q ss_pred -H--HhhhhHHHHHHh-------hccCccEEEEecCCC-----CHHHHHHhhhhcCceeEEee
Q psy6983 162 -Y--ENASRWSLTFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 162 -~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~~ 209 (210)
. ....++|+++++ ++..|++++++||+. .-+.+++.+.+++..++++.
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivs 209 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIIS 209 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEe
Confidence 2 245789998765 467999999999987 33455566666788888774
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.62 E-value=5.3e-16 Score=123.98 Aligned_cols=115 Identities=13% Similarity=0.026 Sum_probs=70.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... + ... .++.++|+||
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~------~-~~~---~~~~i~~~~q------- 80 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL------S-PKE---LARKIAYVPQ------- 80 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC------C-HHH---HHHHHhHHHH-------
Confidence 566679999999999999999999999999854 33333332210 0 011 1245788887
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHH-------HhhccCccEEEEecCCC--C---
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTF-------QTMVQKTMLEVHLDQPI--T--- 190 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~-------~~~~~~Pdl~I~Ld~~~--~--- 190 (210)
+++.+|+.+ ...+.++|+++ ++++..|++++++||+. |
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222222221 11223444443 34578999999999986 2
Q ss_pred ---HHHHHHhhhhc-CceeEEee
Q psy6983 191 ---PIKMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 191 ---pe~~l~Ri~~R-~r~~~~~~ 209 (210)
....++++.++ ++.++++.
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 22344455554 78888774
No 276
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=6.5e-16 Score=132.18 Aligned_cols=171 Identities=14% Similarity=0.081 Sum_probs=98.5
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHh
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYE 107 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~ 107 (210)
.+.+++++++....+++ +|+++.+|++++|+||||||||||+++|+|+.... ...+..|.+.++|.++.. ....
T Consensus 41 ~i~~l~~~~~~~~il~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 41 EARDLNVFYGDEQALDD--VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI-DAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred EEEEEEEEECCEeeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcc-cCCCCceEEEECCEEccccccchHh
Confidence 35666666654333444 56667999999999999999999999999985420 000122333333332210 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh------hHHhhhhHHHHHHh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL------MYENASRWSLTFQT------- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~------~~~~~~~~s~~~~~------- 174 (210)
.++.++|++|++.+++. +...+.... ........ +....+.++++.+|+. ......++|+++++
T Consensus 118 ~~~~i~~v~q~~~l~~~-tv~enl~~~-~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPK-SIYDNVAYG-LKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hhccEEEEecCCccCcC-CHHHHHHHH-HHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 23678999999765542 222221100 00111111 2334577788888873 12334578887755
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
++..|+++|++|++. |++ ..++++.+ ++.++++
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~ 235 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIV 235 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 467999999999987 433 33444443 4666665
No 277
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.62 E-value=2.5e-15 Score=126.54 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=91.9
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.+.+++++++.......-.+|+++++|++++|+|+||||||||+++|+|+... ..|.+.++|.++.. ....
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI------FDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC------CCCeEEECCEEhhhCCHHH
Confidence 3446667766654211222335677799999999999999999999999998542 22222333332211 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-------------hHHhhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-------------MYENASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-------------~~~~~~~~s~~~~~ 174 (210)
.++.++|++|++.+++. +...+.... .... .....+++...++. ......++|+++++
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~-----~~~~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~q 163 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPE-----CKCT---DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQ 163 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcC-----CCCC---HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHH
Confidence 23678999999876653 433332110 0000 11122222222322 11122456666543
Q ss_pred -------hccCccEEEEecCCC--CHH---HHHHhhhh--cCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPI---KMMERSIH--SARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~--R~r~~~~~~ 209 (210)
++..|+++|++||+. |++ .+++.+.+ +++.++++.
T Consensus 164 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~s 212 (257)
T cd03288 164 LFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIA 212 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 568999999999987 333 23333332 477777763
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1e-15 Score=140.55 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=95.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh---Hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---VQ 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~l 121 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... +... ..++.++|++|++ .+
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~------~~~~---~~~~~i~~v~q~~~~~~~ 352 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR------SPLD---AVKKGMAYITESRRDNGF 352 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC------CHHH---HHHCCcEEccCccccCCC
Confidence 567779999999999999999999999999853 33334333210 1011 1225789999973 35
Q ss_pred hhHHHHHHcCCCCcc----cc---cc-cchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEE
Q psy6983 122 KTMLEVHLDQPITPI----KM---ME-RSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~----~~---~~-~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
++.++...+...... .. .. ....++...+.++++.+|+. + ...+.++|+++++ ++..|+++|
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 432 (510)
T PRK09700 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVII 432 (510)
T ss_pred cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEE
Confidence 544444433321100 00 01 01122334577889999985 3 3445689998865 357999999
Q ss_pred EecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 184 HLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++||+. |+. ..++++.++|+.++++.
T Consensus 433 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vs 466 (510)
T PRK09700 433 FDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466 (510)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 999987 333 44555566788888764
No 279
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.62 E-value=1.6e-15 Score=141.01 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=99.3
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.+.+++++++.......-.+|+++++|+.++|+||||||||||+++|+|++++ ..|.+.++|.++.. ....
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p------~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV------SEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC------CCCEEEECCEEHhhCCHHH
Confidence 3556777777764322223346777799999999999999999999999998643 12222223322211 0111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~ 174 (210)
.++.++|++|++.+++. +...+.... .....+ +...++++.+++.++ ..-..+|+++++
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~------~~~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALG------RPDATQ-QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcC------CCCCCH-HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 23679999999988753 333333211 011111 223444555554311 111357777654
Q ss_pred -------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~~ 209 (210)
++..|+++|++|++. |+ +..++.+.+ ++++++++-
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 568999999999987 33 344455544 678888763
No 280
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.4e-15 Score=124.60 Aligned_cols=171 Identities=15% Similarity=-0.023 Sum_probs=105.8
Q ss_pred CCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH--HHHhc
Q psy6983 32 FCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA--LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~ 108 (210)
+.++.+++.+. ..++.+ |+++++||+.+|+||||||||||+++|+|..++ +...+.+.|+|.+++. ...+.
T Consensus 6 I~dLhv~v~~~keILkgv--nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y----~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 6 IKDLHVEVEGKKEILKGV--NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY----EVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred EeeeEEEecCchhhhcCc--ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc----eEecceEEECCcccccCCHhHHH
Confidence 46777777775 555554 566799999999999999999999999998653 2244445555555432 22233
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCC---cccccccchhhhHHHHHHHHHHcchhh-HH-hhh--hHHHH-------HHh
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPIT---PIKMMERSIHSARWELTQCQICSQALM-YE-NAS--RWSLT-------FQT 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~---~~~~~~~s~~e~~~~~~~~L~~~gl~~-~~-~~~--~~s~~-------~~~ 174 (210)
+.-+.+.||.|.-.+..+........ ...-.+. ..+......+.++.+++.. +. .+- -+|++ +|.
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 45577889998543322211111000 0000001 2344556777888888762 22 221 14544 455
Q ss_pred hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++.|++|+-. --..-+++++..++.+++|-
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 678999999998843 23456778888898888873
No 281
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=1.1e-15 Score=141.43 Aligned_cols=167 Identities=11% Similarity=-0.066 Sum_probs=96.4
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.+.+++++|+.......-.+|+++++|+.++|+||||||||||+++|+|++++. .|.+.++|.++.. ....
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~------~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT------SGSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEehhhCCHHH
Confidence 46677777777543222233466777999999999999999999999999986432 2222222222211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-------------HHhhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-------------YENASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-------------~~~~~~~s~~~~~ 174 (210)
.++.++|++|++.+++. +...+.... ... .++ +...++++..++.+ -..-..+|+++++
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~-----~~~-~~~-~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARF-----GEN-ADP-EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhcc-----CCC-CCH-HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 23679999999987753 333333210 100 111 12223333333321 1112357777654
Q ss_pred -------hccCccEEEEecCCC--CH---HHHHHhh---hhcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TP---IKMMERS---IHSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri---~~R~r~~~~~~ 209 (210)
++..|+++|++|++. |+ +..++.+ ..++++++++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~it 511 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT 511 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 568999999999987 33 2233333 33578888874
No 282
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=8.9e-16 Score=129.82 Aligned_cols=171 Identities=15% Similarity=0.053 Sum_probs=95.2
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~ 108 (210)
+.+++++++.....++ +|+++++|++++|+|+||||||||+++|+|+..... ..+..|.+.++|.++.. .....
T Consensus 13 i~~v~~~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFLAVKN--VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIP-GFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEEEeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccC-CCCCceEEEECCEEccccccChHHH
Confidence 4556666654333333 566679999999999999999999999999753200 00112222233322210 01122
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh------HHhhhhHHHHHHh-------h
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM------YENASRWSLTFQT-------M 175 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~------~~~~~~~s~~~~~-------~ 175 (210)
++.++|++|++.+++. +...+..... ...... .+....+.++++.+++.. .....++|+++++ +
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~-~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGA-RINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhh-hhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 3579999999766542 3333321111 001111 122234556667666641 1233457777654 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|.+||+. |++ .++.++.+ ++.++++.
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vt 207 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVT 207 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 67999999999987 332 34444443 46777663
No 283
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.62 E-value=5.1e-16 Score=118.03 Aligned_cols=115 Identities=17% Similarity=0.003 Sum_probs=78.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+|+||||||||+++|+|... +.+.+.++.. ......++.+++++|++.+++.
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~ 73 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD----------IDIEELRRRIGYVPQDPQLFPG 73 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT----------SHHHHHHHTEEEEESSHCHHTT
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc----------cccccccccccccccccccccc
Confidence 567789999999999999999999999999853 2223333221 0112233678999999777665
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhh----hhHHHHHHh-------hccCccEEEEecCC
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENA----SRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~----~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
++...+ .....+.++++.+++.. .... ..+|+++++ ++..|+++|++||+
T Consensus 74 ~tv~~~--------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 74 LTVREN--------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp SBHHHH--------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccc--------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 543322 23345777777777762 2233 677777654 56899999999984
No 284
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=140.04 Aligned_cols=151 Identities=9% Similarity=-0.023 Sum_probs=97.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH---h
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV---Q 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~---l 121 (210)
+|+++.+|++++|+||||||||||+++|+|+.. +.+.++++... +... ..++.++|++|++. +
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~------~~~~---~~~~~i~~~~q~~~~~~~ 342 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR------SPRD---AIRAGIMLCPEDRKAEGI 342 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC------CHHH---HHhCCCEEcCcCHhhCCC
Confidence 677789999999999999999999999999853 33333332210 0011 12357899999863 5
Q ss_pred hhHHHHHHcCCCCcc-ccc--c--cchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEec
Q psy6983 122 KTMLEVHLDQPITPI-KMM--E--RSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLD 186 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~-~~~--~--~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld 186 (210)
++.++...+...... ... . ....+.+..+.++++.+|+. ....+.++|+++++ ++..|+++|++|
T Consensus 343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE 422 (501)
T PRK11288 343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE 422 (501)
T ss_pred cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 554444333321110 000 0 01122234577889999983 34456789998866 357999999999
Q ss_pred CCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 187 QPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 187 ~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
|+. .-..+++++.++|..++++.
T Consensus 423 Pt~~LD~~~~~~l~~~l~~l~~~g~tviivs 453 (501)
T PRK11288 423 PTRGIDVGAKHEIYNVIYELAAQGVAVLFVS 453 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 987 33445667788899988874
No 285
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.61 E-value=4.7e-15 Score=120.55 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=82.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++++|++++|+||||||||||+++|+|.... ..|.+.++| +++|++|++.+++ .+..
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~------~~G~i~~~g------------~i~~~~q~~~l~~-~t~~ 83 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK------LSGSVSVPG------------SIAYVSQEPWIQN-GTIR 83 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC------CCCeEEEcC------------EEEEEecCchhcc-CcHH
Confidence 36777799999999999999999999999998643 333333332 5899999987664 3444
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh-------------HHhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM-------------YENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-------------~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.+..... .. . + ....+.++.+++.+ .....++|+++++ ++..|++++++|++
T Consensus 84 enl~~~~-~~---~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 84 ENILFGK-PF---D--E--ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred HHhccCC-Cc---C--H--HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 4442211 11 1 1 11222333333321 1122456766644 57899999999998
Q ss_pred C--CHHH---HHHh----hhhcCceeEEee
Q psy6983 189 I--TPIK---MMER----SIHSARFVLVIE 209 (210)
Q Consensus 189 ~--~pe~---~l~R----i~~R~r~~~~~~ 209 (210)
. |++. .++. ..+.++.++++.
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s 185 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVT 185 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 7 4442 3232 223467888764
No 286
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.61 E-value=2.5e-15 Score=140.09 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=99.1
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.+.+++++|+... ...-.+|+++++|+.++|+|+||||||||+++|+|+++ +.++|.++..+. ..
T Consensus 334 ~I~~~~vsf~y~~~~-~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~-------~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDNSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT-------RA 405 (588)
T ss_pred eEEEEEEEEEeCCCC-ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC-------HH
Confidence 466777777775421 12333667779999999999999999999999999865 333333333210 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--------Hh-----hhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--------EN-----ASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--------~~-----~~~~s~ 170 (210)
. .++.++|++|++.+++. +...+.... +....+ +...++++.+++.++ .. -..+|+
T Consensus 406 ~---~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~------~~~~~d-~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 406 S---LRRNIAVVFQDAGLFNR-SIEDNIRVG------RPDATD-EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred H---HHhheEEEecCcccccc-cHHHHHhcC------CCCCCH-HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 2 23679999999988753 333332111 111111 234445555555411 11 124777
Q ss_pred HHHh-------hccCccEEEEecCCC-----CHHHHHHhhhh--cCceeEEe
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIH--SARFVLVI 208 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~--R~r~~~~~ 208 (210)
+.++ ++..|+++|++|++. +.+..++.+.+ +++++++|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIii 526 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII 526 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7654 568999999999997 33344455554 47888876
No 287
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.61 E-value=2.5e-15 Score=139.55 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=98.4
Q ss_pred ccCCCccccccCCCC---CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-H
Q psy6983 29 SVPFCFLCASQNHNS---TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-L 104 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~ 104 (210)
.+.+.+++++++... .+++ +|+++++||.++|+|+||||||||+++|+|++++. .|.+.++|.++.. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~--inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~------~G~I~i~g~~i~~~~ 408 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDG--LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ------SGRILLDGVDLRQLD 408 (576)
T ss_pred eEEEEEEEEECCCCCCCccccc--eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC------CCEEEECCEEHHhcC
Confidence 456777777776422 3333 67777999999999999999999999999986531 2222233332211 0
Q ss_pred HHhcccceeeeehhhHhhhH--HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHH
Q psy6983 105 MYENASRWSLTFQTMVQKTM--LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWS 169 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~--~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s 169 (210)
....++.++|++|++.+++. .+++.... ...+ .+...++++.+|+.++ ..-..+|
T Consensus 409 ~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~---------~~~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 409 PAELRARMALVPQDPVLFAASVMENIRYGR---------PDAT-DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred HHHHHHhceEEccCCccccccHHHHHhcCC---------CCCC-HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 11122679999999987753 23332210 1111 1335556666665411 1123477
Q ss_pred HHHHh-------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEe
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVI 208 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~ 208 (210)
++.++ ++..|+++|++|++. |+ +..++++.. +++.+++|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iii 531 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLII 531 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 77654 567999999999987 33 334444444 47888776
No 288
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.61 E-value=5.4e-16 Score=125.48 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=79.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC--CcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG--DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~--~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
+|+++++|++++|+||||||||||+++|+|+. .. ..+.+.++|.++... ..++.++|++|++.+++.++.
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~------~~G~i~~~g~~~~~~--~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG------VSGEVLINGRPLDKR--SFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC------CceEEEECCEeCchH--hhhheEEEccCcccCCCCCcH
Confidence 56777999999999999999999999999986 42 233334444443221 223678999999765543332
Q ss_pred HHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHH-------HHhhccCccEEEEecCCC--C------HH
Q psy6983 128 HLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLT-------FQTMVQKTMLEVHLDQPI--T------PI 192 (210)
Q Consensus 128 ~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~-------~~~~~~~Pdl~I~Ld~~~--~------pe 192 (210)
..+.. +...+. ++|++ .++++..|++++++||+. | ..
T Consensus 100 ~~~i~-----------------~~~~~~-----------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~ 151 (194)
T cd03213 100 RETLM-----------------FAAKLR-----------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM 151 (194)
T ss_pred HHHHH-----------------HHHHhc-----------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 22210 000000 33333 345678999999999987 2 33
Q ss_pred HHHHhhhhcCceeEEee
Q psy6983 193 KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~R~r~~~~~~ 209 (210)
.+++++.++++.++++.
T Consensus 152 ~~l~~~~~~~~tiii~s 168 (194)
T cd03213 152 SLLRRLADTGRTIICSI 168 (194)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 45566666788888874
No 289
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=143.05 Aligned_cols=154 Identities=12% Similarity=0.041 Sum_probs=98.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|+++++||+++|+|+||||||||+++|+|+.+ +.++|+++... +........++.++|+||++.+++
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~------~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL------DADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcC------CHHHHHHHHhccEEEEeCCcccCC
Confidence 3667779999999999999999999999999864 33333333211 101111111357899999987765
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC-----
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI----- 189 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~----- 189 (210)
..+...+.... .........+.+..+.++++.+|+.+ ...+.++|+++++ ++..|++++++||+.
T Consensus 100 ~~tv~enl~~~-~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~ 178 (648)
T PRK10535 100 HLTAAQNVEVP-AVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178 (648)
T ss_pred CCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 43333222110 00111122344456788899988873 2334567877644 567999999999987
Q ss_pred ---CHHHHHHhhhhcCceeEEee
Q psy6983 190 ---TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 190 ---~pe~~l~Ri~~R~r~~~~~~ 209 (210)
.....++++.++|+.++++.
T Consensus 179 s~~~l~~ll~~l~~~g~tilivs 201 (648)
T PRK10535 179 SGEEVMAILHQLRDRGHTVIIVT 201 (648)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEC
Confidence 33355666667788988874
No 290
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=8.4e-16 Score=120.78 Aligned_cols=126 Identities=13% Similarity=-0.030 Sum_probs=87.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+.+.+||+++|.||||||||||+|+++-+.. +.+.|+++.... .+.+ +.+++|+.|.+.||+.
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~-------pea~---Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLK-------PEAY---RQQVSYCAQTPALFGD 91 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccC-------hHHH---HHHHHHHHcCcccccc
Confidence 667779999999999999999999999998743 556666665311 1223 3779999999998863
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
++..+.. ..+.-+...-++.++.+++.++++. .-....++||+..++ .--|++++++|.|.
T Consensus 92 -tVeDNli---fP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 92 -TVEDNLI---FPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred -chhhccc---cchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 2222221 1222222333777899999999997 334456788876553 45899988888775
No 291
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.61 E-value=1.6e-15 Score=140.61 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=102.7
Q ss_pred ccCCCccccccCCCC---CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcc
Q psy6983 29 SVPFCFLCASQNHNS---TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHN 100 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~ 100 (210)
++.+.+++++|++.. ....-.+|+++++|++++|+||||||||||+++|+|+++ +.++|.++... +
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~------~ 410 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD------S 410 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------C
Confidence 566788888886531 112233677789999999999999999999999999864 34444443321 1
Q ss_pred hHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH--------HhhhhHHHHH
Q psy6983 101 LLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY--------ENASRWSLTF 172 (210)
Q Consensus 101 ~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~--------~~~~~~s~~~ 172 (210)
.... ++.+++++|++.+++.. ...+. .. ....+.+.++++.+++.++ .....+|+++
T Consensus 411 -~~~~---~~~i~~v~q~~~lf~~t-i~~n~---------~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq 475 (555)
T TIGR01194 411 -RDDY---RDLFSAIFADFHLFDDL-IGPDE---------GE-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQ 475 (555)
T ss_pred -HHHH---HhhCcEEccChhhhhhh-hhccc---------cc-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHH
Confidence 1222 26789999999887642 11111 01 1122345667777777622 2224688887
Q ss_pred Hh-------hccCccEEEEecCCC--CHHHH---HHhh----hhcCceeEEee
Q psy6983 173 QT-------MVQKTMLEVHLDQPI--TPIKM---MERS----IHSARFVLVIE 209 (210)
Q Consensus 173 ~~-------~~~~Pdl~I~Ld~~~--~pe~~---l~Ri----~~R~r~~~~~~ 209 (210)
++ ++..|+++|++|++. |++.. .+.+ ..++|++++|-
T Consensus 476 ~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiis 528 (555)
T TIGR01194 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55 467999999999997 43332 2333 34689988873
No 292
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=2.1e-15 Score=126.59 Aligned_cols=133 Identities=13% Similarity=0.010 Sum_probs=85.0
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh---HHHHH
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT---MLEVH 128 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~---~~~~~ 128 (210)
+++.+|++++|+||||||||||+++|+|..... .|.+.+++ .+++|++|+..... ..+.+
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~------~G~i~~~g-----------~~i~~~~q~~~~~~~~tv~e~l 82 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------EGDIEIEL-----------DTVSYKPQYIKADYEGTVRDLL 82 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC------CCeEEECC-----------ceEEEecccccCCCCCCHHHHH
Confidence 346799999999999999999999999986432 22222222 26899999865322 22222
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH-----
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI----- 192 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe----- 192 (210)
.... . ... .......++++.+|+.. .....++|+++++ ++..|++++++||+. |++
T Consensus 83 ~~~~----~--~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 83 SSIT----K--DFY--THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HHHh----h--hcc--ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1110 0 000 11123566778888862 2345678887754 467999999999987 443
Q ss_pred -HHHHhhhh-cCceeEEee
Q psy6983 193 -KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 -~~l~Ri~~-R~r~~~~~~ 209 (210)
..+.++.+ +++.+++++
T Consensus 155 ~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 34455544 478888875
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.6e-15 Score=119.06 Aligned_cols=123 Identities=16% Similarity=0.077 Sum_probs=72.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++++|++++|+||||||||||+++|+|+.... .+.+.++|.++.. .....++.++|+||++.+++ .+..
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~------~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT------SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC------CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 56677999999999999999999999999986421 2222223322211 01112356899999976544 2322
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CH---H---HHHHhhhh
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TP---I---KMMERSIH 200 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~p---e---~~l~Ri~~ 200 (210)
.+. .|..+ .+.....++++..|++++.+||+. |+ + ..++++.
T Consensus 94 e~l---------LS~G~--------------------~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~- 143 (171)
T cd03228 94 ENI---------LSGGQ--------------------RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA- 143 (171)
T ss_pred HHh---------hCHHH--------------------HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-
Confidence 221 01111 011223445678999999999987 32 2 2333443
Q ss_pred cCceeEEee
Q psy6983 201 SARFVLVIE 209 (210)
Q Consensus 201 R~r~~~~~~ 209 (210)
+++.++++.
T Consensus 144 ~~~tii~~s 152 (171)
T cd03228 144 KGKTVIVIA 152 (171)
T ss_pred CCCEEEEEe
Confidence 356666653
No 294
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=7.9e-16 Score=124.28 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=78.8
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++++|++++|+||||||||||+++|+|.... .+..+.+.+++.++.. ..++.++|++|++.+++.++..
T Consensus 25 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~----~~~~G~i~~~g~~~~~---~~~~~i~~~~q~~~~~~~~tv~ 97 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA----GVITGEILINGRPLDK---NFQRSTGYVEQQDVHSPNLTVR 97 (192)
T ss_pred ccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC----CCcceEEEECCEehHH---HhhhceEEecccCccccCCcHH
Confidence 36677799999999999999999999999997421 1123334444444331 2235789999987655443333
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHH-------HHhhccCccEEEEecCCC--CH------HH
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLT-------FQTMVQKTMLEVHLDQPI--TP------IK 193 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~-------~~~~~~~Pdl~I~Ld~~~--~p------e~ 193 (210)
.+... ...+. ++|++ .++++..|++++++||+. |+ ..
T Consensus 98 ~~l~~-----------------~~~~~-----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 98 EALRF-----------------SALLR-----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred HHHHH-----------------HHHHh-----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 22200 00000 34443 345678999999999987 32 24
Q ss_pred HHHhhhhcCceeEEee
Q psy6983 194 MMERSIHSARFVLVIE 209 (210)
Q Consensus 194 ~l~Ri~~R~r~~~~~~ 209 (210)
.++++.++++.++++.
T Consensus 150 ~l~~~~~~~~tiiivt 165 (192)
T cd03232 150 FLKKLADSGQAILCTI 165 (192)
T ss_pred HHHHHHHcCCEEEEEE
Confidence 4455555688888773
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.60 E-value=5.3e-15 Score=135.11 Aligned_cols=173 Identities=12% Similarity=0.002 Sum_probs=99.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--HHHHh
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--ALMYE 107 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~ 107 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+++|+|.......| .+.++|.+.. .....
T Consensus 261 l~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G-----~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHN--LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN-----DLTLFGRRRGSGETIWD 333 (490)
T ss_pred EEEeceEEEECCeeEEee--ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC-----eEEEecccCCCCCCHHH
Confidence 345666666654434444 56677999999999999999999999999964211111 1112221110 00011
Q ss_pred cccceeeeehhhHhhhH-----HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-H--HhhhhHHHHHHh-----
Q psy6983 108 NASRWSLTFQTMVQKTM-----LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-Y--ENASRWSLTFQT----- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~-----~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-~--~~~~~~s~~~~~----- 174 (210)
.+++++|++|++.++.. .+..................+....+.++++.+|+.. + ..+.++|+++++
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 23579999998754321 1222111100000111111223346788899999863 3 335688988765
Q ss_pred --hccCccEEEEecCCC--CH------HHHHHhhhhcCce-eEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TP------IKMMERSIHSARF-VLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~-~~~~~ 209 (210)
++..|++++.+||+. |+ ...+.++.+++.. ++++.
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 467999999999987 33 3344455556654 66663
No 296
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.7e-15 Score=121.79 Aligned_cols=145 Identities=18% Similarity=0.047 Sum_probs=101.8
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++.+++....+.++++. +++|.+++|+||||||||||+.+++++. .+.+.|.++..|.. +
T Consensus 4 i~nv~K~y~~~~vl~~isl~--i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s----~------ 71 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLD--IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS----K------ 71 (252)
T ss_pred ehhhhHhhCCEEeeccceee--ecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh----H------
Confidence 34555666666566666554 5899999999999999999999999984 36777777766533 1
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcc-cccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhhc-------
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPI-KMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTMV------- 176 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~~------- 176 (210)
...++++..-|......++++......+.. ...+|...+|+..+.++++.++|. ..+..+++||+.++++
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 112556777788777666655444332222 445677788989999999999998 5666789999987752
Q ss_pred cCccEEEEecCCC
Q psy6983 177 QKTMLEVHLDQPI 189 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~ 189 (210)
+.-|. |+||.|.
T Consensus 152 QdTdy-vlLDEPL 163 (252)
T COG4604 152 QDTDY-VLLDEPL 163 (252)
T ss_pred ccCcE-EEecCcc
Confidence 46677 5555544
No 297
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=8.4e-16 Score=154.89 Aligned_cols=171 Identities=13% Similarity=0.023 Sum_probs=104.8
Q ss_pred CCccccccCCCC--CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 32 FCFLCASQNHNS--TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 32 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+++++++... ....-.+|+.+++|++++|+||||||||||+++|+|.... +.+..|.+.++|.+.... .+
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~---g~~~~G~I~i~G~~~~~~---~~ 835 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT---GVITGGDRLVNGRPLDSS---FQ 835 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC---CCcceeEEEECCEECChh---hh
Confidence 455555554211 1112236778899999999999999999999999998542 223334455555544222 23
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCc-ccc-cccchhhhHHHHHHHHHHcchhhHHh--hh----hHHHHHHh-------
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITP-IKM-MERSIHSARWELTQCQICSQALMYEN--AS----RWSLTFQT------- 174 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~-~~~-~~~s~~e~~~~~~~~L~~~gl~~~~~--~~----~~s~~~~~------- 174 (210)
+.++|++|+..+++.+++..+..... ... .+.+..+..+.+.++++.+|+.+..+ .. .+|+++++
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 67899999876554443333321100 000 01223344456788999998873322 11 57887765
Q ss_pred hccCcc-EEEEecCCC--------CHHHHHHhhhhcCceeEEe
Q psy6983 175 MVQKTM-LEVHLDQPI--------TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 175 ~~~~Pd-l~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~ 208 (210)
++..|+ +++.+||+. .-...++++.++|+.++++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t 958 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT 958 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 457998 777777765 3345567777788988876
No 298
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.60 E-value=2.4e-15 Score=137.87 Aligned_cols=151 Identities=10% Similarity=0.021 Sum_probs=96.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh---Hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---VQ 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~l 121 (210)
+|+++.+|++++|+||||||||||+++|+|+.. +.+.|+++.. .+... ..++.++|++|++ .+
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~------~~~~~---~~~~~i~~v~q~~~~~~~ 341 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT------RSPQD---GLANGIVYISEDRKRDGL 341 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC------CCHHH---HHHCCCEEecCccccCCC
Confidence 677789999999999999999999999999853 3333333321 01011 1125699999995 24
Q ss_pred hhHHHHHHcCCCCcc-ccc---c-cchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEec
Q psy6983 122 KTMLEVHLDQPITPI-KMM---E-RSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLD 186 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~-~~~---~-~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld 186 (210)
++.++...+...... ... . ....+....+.++++.+|+. ......++|+++++ ++..|+++|++|
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 443333333221100 000 0 11223345678899999984 34446788998865 357999999999
Q ss_pred CCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 187 QPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 187 ~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
|+. |+ ..+++++.++|+.++++.
T Consensus 422 Pt~~LD~~~~~~l~~~l~~~~~~g~tviivt 452 (501)
T PRK10762 422 PTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHCCCEEEEEc
Confidence 987 33 355667766788888764
No 299
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.60 E-value=2.8e-15 Score=142.25 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=100.0
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
++.+.+++++|+.......-.+|+++++|+.++|+|+||||||||+++|+|++++ ..|.+.++|.++.. ....
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p------~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP------QHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECCEehhhCCHHH
Confidence 4667788877764432223336677799999999999999999999999998642 12222223322211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~ 174 (210)
.++.++||+|++.+++. +...+.... + +..+ .+.+.++++..++.++ ..-..+|+++++
T Consensus 529 ~r~~i~~v~q~~~lf~~-ti~eNi~~~-----~-~~~~-~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 529 LRRQMGVVLQENVLFSR-SIRDNIALC-----N-PGAP-FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHHhCeEEccCCeehhh-hHHHHHhcC-----C-CCCC-HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 23679999999987763 333333211 0 1111 1234455555555411 112357777654
Q ss_pred -------hccCccEEEEecCCC--CH---HHHHHhhhh--cCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TP---IKMMERSIH--SARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~--R~r~~~~~~ 209 (210)
++..|+++|++|++. |+ +..++.+.+ +++++++|.
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 649 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 568999999999987 33 334444544 478888763
No 300
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.8e-15 Score=127.81 Aligned_cols=167 Identities=11% Similarity=-0.006 Sum_probs=95.6
Q ss_pred ccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHHhcccce
Q psy6983 36 CASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMYENASRW 112 (210)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~ 112 (210)
++.++....+++ +|+++++|++++|+|+||||||||+++|+|+.... .+.+..|.+.++|.++.. .....++.+
T Consensus 15 ~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 91 (261)
T PRK14263 15 KIFYGNFMAVRD--SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV-KGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91 (261)
T ss_pred EEEeCCEEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccc-cCCCCceEEEECCEeccccccchHhhhhce
Confidence 334443333333 56667999999999999999999999999986421 000123333344433211 011123568
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-H-----HhhhhHHHHHHh-------hccCc
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-Y-----ENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-~-----~~~~~~s~~~~~-------~~~~P 179 (210)
+|+||++.++. .+...+..... .... ...+....+.++++.+++.. . ....++|+++++ ++..|
T Consensus 92 ~~v~q~~~~~~-~tv~enl~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 92 GMVFQQPNPFS-MSIFDNVAFGL-RLNR-YKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred EEEecCCcccc-ccHHHHHHHHH-hhcC-chHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999976542 33333321110 0001 11122345777888888741 1 123467777644 56799
Q ss_pred cEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 180 MLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++++++||+. |+ ...++++. +++.++++.
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~is 205 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVT 205 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 9999999987 32 23344443 367777663
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.60 E-value=1.4e-15 Score=141.04 Aligned_cols=162 Identities=9% Similarity=-0.072 Sum_probs=98.2
Q ss_pred cCCCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 30 VPFCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+.+.+++++|+ .....++ +|+++.+|++++|+||||||||||+++|+|.... ..|.+.+++
T Consensus 7 l~i~~l~~~y~~~~~il~~--vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p------~~G~i~~~~---------- 68 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKD--ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE------FEGEARPAP---------- 68 (556)
T ss_pred EEEeeEEEEeCCCCeeeeC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEecC----------
Confidence 34567777776 4444444 5566799999999999999999999999998643 222222211
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccc-------------cccc----------------------hhhhHHHHHHH
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKM-------------MERS----------------------IHSARWELTQC 153 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-------------~~~s----------------------~~e~~~~~~~~ 153 (210)
...++|++|++.+++.++...+.......+ .... ..+...++.++
T Consensus 69 ~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 69 GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 146899999976544323222211100000 0000 00112356677
Q ss_pred HHHcchh-hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH---HHHHhhhhcCceeEEee
Q psy6983 154 QICSQAL-MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 154 L~~~gl~-~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~R~r~~~~~~ 209 (210)
+..+|+. ......++|+++++ ++..|+++|++||+. |++ .+.+.+.+-+..++++.
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiis 217 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVT 217 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEe
Confidence 8888875 33456688888765 467999999999987 333 34445555455776664
No 302
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.60 E-value=3.4e-15 Score=151.01 Aligned_cols=173 Identities=9% Similarity=0.015 Sum_probs=106.9
Q ss_pred ccCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCccee---------------------
Q psy6983 29 SVPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAY--------------------- 86 (210)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~--------------------- 86 (210)
.+.|.+++++|+.. .....-.+|+++++|+.+||+||||||||||+++|.|++++...
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 47788888888642 11223346777899999999999999999999999999875200
Q ss_pred ---------------------------eccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccc
Q psy6983 87 ---------------------------AEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKM 138 (210)
Q Consensus 87 ---------------------------~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~ 138 (210)
..+..|.+.++|.++.. .....++.++||+|++.||+. ++..++....
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~--- 1320 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK--- 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC---
Confidence 00124556666665522 112234789999999998852 3333332211
Q ss_pred cccchhhhHHHHHHHHHHcchhhH--------H-----hhhhHHHHHHh-------hccCccEEEEecCCC--CH--H--
Q psy6983 139 MERSIHSARWELTQCQICSQALMY--------E-----NASRWSLTFQT-------MVQKTMLEVHLDQPI--TP--I-- 192 (210)
Q Consensus 139 ~~~s~~e~~~~~~~~L~~~gl~~~--------~-----~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p--e-- 192 (210)
....+ +.+.++++..++.++ . .-..+|+++++ ++..|+++|++|+|. |+ |
T Consensus 1321 ---~~at~-eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1321 ---EDATR-EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred ---CCCCH-HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 11112 235555555555411 1 11257887755 467999999999987 22 2
Q ss_pred --HHHHhhh-hcCceeEEee
Q psy6983 193 --KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 193 --~~l~Ri~-~R~r~~~~~~ 209 (210)
..+.++. .++|++++|-
T Consensus 1397 I~~~L~~~~~~~~~TvIiIa 1416 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIA 1416 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEe
Confidence 2233333 3589999873
No 303
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=3.4e-15 Score=140.99 Aligned_cols=160 Identities=8% Similarity=-0.081 Sum_probs=100.9
Q ss_pred cCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 30 VPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+.+.+++++++.. ..+++ +|+++++|++++|+||||||||||+++|+|+.+.. .|+ +.++ .
T Consensus 452 i~~~nv~~~~~~~~~il~~--isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~G~-----i~~~----------~ 513 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIES--LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY-GGR-----LTKP----------A 513 (659)
T ss_pred EEEEeeEEECCCCCeeeec--ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCe-----Eeec----------C
Confidence 5567777666432 23333 67777999999999999999999999999986432 121 1111 1
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchhhHHh-----------hhhHHHHHHh--
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER-SIHSARWELTQCQICSQALMYEN-----------ASRWSLTFQT-- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~~~~~-----------~~~~s~~~~~-- 174 (210)
+++++|++|++.+++. +...+...+.. ..+. ......+.+.++++.+++.++.. ..++|+++++
T Consensus 514 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLG-TLRDQIIYPDS-SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CCcEEEECCCCCCCCc-CHHHHHhcCCC-hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHH
Confidence 3579999999876654 33333322111 0000 01111234667788888763221 1468888765
Q ss_pred -----hccCccEEEEecCCC--CH---HHHHHhhhhcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TP---IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. |+ +...+.+.+.++++++|.
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~is 636 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVS 636 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 467999999999987 33 344556666788888874
No 304
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.59 E-value=4e-15 Score=137.74 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=100.1
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.+.+++++|+... ...-.+|+++++|+.++|+||||||||||+++|+|+++ +.++|.++... + ..
T Consensus 322 ~i~~~~v~f~y~~~~-~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~------~-~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQDNG-FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE------Q-PE 393 (547)
T ss_pred eEEEEEEEEEeCCCC-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC------C-HH
Confidence 466777777776422 12333677779999999999999999999999999864 33444443311 1 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h------hhhHHHHHHh--
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N------ASRWSLTFQT-- 174 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~------~~~~s~~~~~-- 174 (210)
.. ++.+++++|++.+++.. ...+. . ..+.+.+.+.++.+++.... . -..+|+++++
T Consensus 394 ~~---~~~i~~v~q~~~lf~~t-i~~n~----------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 394 DY---RKLFSAVFTDFHLFDQL-LGPEG----------K-PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred HH---hhheEEEecChhHHHHh-hcccc----------C-chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 22 36799999999887642 11110 0 11223456677777765221 1 1367887654
Q ss_pred -----hccCccEEEEecCCC--CHHHH---HHhhh----hcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPIKM---MERSI----HSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe~~---l~Ri~----~R~r~~~~~~ 209 (210)
++..|+++|++|++. |++.. ++.+. ..++++++|.
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~it 507 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAIS 507 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 468999999999987 44432 23332 2478888873
No 305
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=2.3e-15 Score=152.77 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=104.1
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.|.+++++|..+.....-.+|+++++||.+||+|+||||||||+++|.|+.++ ..|.+.++|.++.. ....
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p------~~G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL------EKGRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC------CCceEEECCEEhhhCCHHH
Confidence 4678888888865433333446677799999999999999999999999998642 22233333333211 0112
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-----h--------hhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-----A--------SRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-----~--------~~~s~~~~~ 174 (210)
.++++++|+|++.+|+. +...+... .+ ..++ +.+.++++.+++.++-. + ..+|+++++
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~-----~~--~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDP-----FS--EHND-ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCC-----CC--CCCH-HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 23789999999998864 44444321 11 1122 34566667766652111 1 257887655
Q ss_pred -------hccCccEEEEecCCC----CHHHHHHhhhh---cCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI----TPIKMMERSIH---SARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~----~pe~~l~Ri~~---R~r~~~~~~ 209 (210)
++.+|+++|++|+|. ..|..+++..+ ++|++++|-
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IA 1427 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIA 1427 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 467999999999987 33344444332 478888873
No 306
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.2e-15 Score=133.72 Aligned_cols=158 Identities=15% Similarity=0.014 Sum_probs=99.0
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcc---h-HHHHHhc
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN---L-LALMYEN 108 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~---~-l~~~~~~ 108 (210)
.++++++++.+ ...-.+|+++++|+.++|+|+||||||||+++|+|+... ..|.+.++|.+ + ...++
T Consensus 324 ~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~------~~G~I~vng~~l~~l~~~~~~-- 394 (559)
T COG4988 324 ENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP------TQGEIRVNGIDLRDLSPEAWR-- 394 (559)
T ss_pred cceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC------CCceEEECCccccccCHHHHH--
Confidence 36666666653 333336677799999999999999999999999998642 22222233222 2 23333
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh--------hhh----HHHHHHh--
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN--------ASR----WSLTFQT-- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~--------~~~----~s~~~~~-- 174 (210)
+++++|.|++.+++. +...+.. +.+...++ +.+.++++++|+.++.. ..+ +|++..+
T Consensus 395 -k~i~~v~Q~p~lf~g-TireNi~------l~~~~~s~-e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 395 -KQISWVSQNPYLFAG-TIRENIL------LARPDASD-EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred -hHeeeeCCCCccccc-cHHHHhh------ccCCcCCH-HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 789999999988763 2222221 11122222 45677888888873333 122 6666543
Q ss_pred -----hccCccEEEEecCCC--CH--H----HHHHhhhhcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TP--I----KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~p--e----~~l~Ri~~R~r~~~~~~ 209 (210)
++.++++++++|||. |. | ..++++.++ ++||+|-
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~it 512 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVIT 512 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEE
Confidence 467899999999987 22 2 234455544 8888873
No 307
>PLN03130 ABC transporter C family member; Provisional
Probab=99.59 E-value=2.6e-15 Score=153.06 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=104.2
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.|.+++++|.++.....-.+|+++++||.|||+|+||||||||+++|.|+++ +.++|.++... + +.
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i------~-l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF------G-LM 1309 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC------C-HH
Confidence 467888888886543333344677779999999999999999999999999864 44444444311 0 23
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-------------hhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-------------ASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-------------~~~~s~ 170 (210)
.. ++++++|+|++.+|+. +...+.... + ...+ +...++++.+++.++-. =..+|+
T Consensus 1310 ~L---R~~IsiVpQdp~LF~G-TIreNLd~~-----~--~~td-eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1310 DL---RKVLGIIPQAPVLFSG-TVRFNLDPF-----N--EHND-ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HH---HhccEEECCCCccccc-cHHHHhCcC-----C--CCCH-HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 23 3789999999998864 444443211 1 1122 34566666666652111 125777
Q ss_pred HHHh-------hccCccEEEEecCCC----CHHHHHHhhhh---cCceeEEe
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI----TPIKMMERSIH---SARFVLVI 208 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~----~pe~~l~Ri~~---R~r~~~~~ 208 (210)
++++ ++.+|+++|++|+|. ..|..+++..+ ++|++++|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~I 1429 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 7655 467999999999987 33344444332 47888887
No 308
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=8.2e-15 Score=119.38 Aligned_cols=158 Identities=13% Similarity=0.030 Sum_probs=88.7
Q ss_pred cCCCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHH
Q psy6983 30 VPFCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~ 106 (210)
+.+.+++++++.. ...++ +|+++.+|++++|+|+||||||||+++|+|+... ..+.+.++|.++.. ...
T Consensus 7 l~~~~l~~~~~~~~~~~l~~--isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~------~~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKN--VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA------EEGKIEIDGIDISTIPLE 78 (207)
T ss_pred EEEEEEEEEeCCCCcccccC--ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC------CCCeEEECCEEhHHCCHH
Confidence 3345555555432 23333 5677799999999999999999999999998542 12222233322211 001
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHH-------HhhccCc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTF-------QTMVQKT 179 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~-------~~~~~~P 179 (210)
..++.++|++|++.+++. +...+.... .... . ..+.+.++ + ......+|+++ ++++..|
T Consensus 79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~----~~~~---~-~~~~~~l~---~--~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSG-TIRSNLDPF----DEYS---D-EEIYGALR---V--SEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HHHhhEEEEecCCcccCc-cHHHHhccc----CCCC---H-HHHHHHhh---c--cCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 123579999999876653 444333110 0111 1 11223333 1 12234455554 3457899
Q ss_pred cEEEEecCCC--CHH---HHHHhhhh--cCceeEEee
Q psy6983 180 MLEVHLDQPI--TPI---KMMERSIH--SARFVLVIE 209 (210)
Q Consensus 180 dl~I~Ld~~~--~pe---~~l~Ri~~--R~r~~~~~~ 209 (210)
+++|++|++. |++ .+++.+++ +++.++++.
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~t 181 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIA 181 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 9999999987 443 33344432 367777663
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.59 E-value=4e-15 Score=117.25 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=74.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++++.....+ .+|+++++|++++|+||||||||||+++|+|+... .+.++++.. .+... .
T Consensus 4 ~~l~~~~~~~~vl~--~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~------~~~~~---~ 72 (163)
T cd03216 4 RGITKRFGGVKALD--GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF------ASPRD---A 72 (163)
T ss_pred EEEEEEECCeEEEe--eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc------CCHHH---H
Confidence 34444444332232 35677799999999999999999999999998542 222322221 00011 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQ 187 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~ 187 (210)
.++.++|+|| .|..+. +.....++++..|++++++||
T Consensus 73 ~~~~i~~~~q-----------------------LS~G~~--------------------qrl~laral~~~p~illlDEP 109 (163)
T cd03216 73 RRAGIAMVYQ-----------------------LSVGER--------------------QMVEIARALARNARLLILDEP 109 (163)
T ss_pred HhcCeEEEEe-----------------------cCHHHH--------------------HHHHHHHHHhcCCCEEEEECC
Confidence 2256899998 111111 111233446789999999999
Q ss_pred CC--CHH------HHHHhhhhcCceeEEee
Q psy6983 188 PI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 188 ~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+. |++ .+++++.++++.++++.
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 139 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFIS 139 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 87 332 45555556688888764
No 310
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.58 E-value=3.3e-15 Score=138.50 Aligned_cols=160 Identities=10% Similarity=-0.048 Sum_probs=93.8
Q ss_pred CCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 32 FCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
+.+++++|+ .....++ +|+++.+|++++|+||||||||||+++|+|.... ..|.+.+++ ..
T Consensus 7 ~~nls~~~~~~~~il~~--is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p------~~G~i~~~~----------~~ 68 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKD--ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE------FNGEARPAP----------GI 68 (552)
T ss_pred EeeEEEecCCCCeeecC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEecC----------CC
Confidence 455565665 3333333 5667799999999999999999999999998643 222222211 14
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccc-------------cccchhh----------------------hHHHHHHHHH
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKM-------------MERSIHS----------------------ARWELTQCQI 155 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-------------~~~s~~e----------------------~~~~~~~~L~ 155 (210)
.++|++|++.+++.++...+........ ...+..+ ...++.++++
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 6899999976543333222221100000 0000000 1123445566
Q ss_pred Hcchh-hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CH---HHHHHhhhhcCceeEEee
Q psy6983 156 CSQAL-MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TP---IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 156 ~~gl~-~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~~R~r~~~~~~ 209 (210)
.+|+. ......++|+++++ ++..|++++++||+. |+ +.+.+-+.+.+..+++|.
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiis 215 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVT 215 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEe
Confidence 66653 22345678888765 467999999999987 33 344455555556777764
No 311
>KOG0055|consensus
Probab=99.58 E-value=7.6e-15 Score=142.86 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=99.3
Q ss_pred ccCCCccccccCCCCCCcccc-ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMS-SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
.+.|.+++++|+....++-.. +|+.+++|++++|+|||||||||++++|.+++++ .++|+++... + .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~------~-~ 422 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL------N-L 422 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc------c-h
Confidence 466888888888765443333 8888999999999999999999999999999763 3344443321 0 2
Q ss_pred HHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-----hHHhhh--------h
Q psy6983 103 ALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-----MYENAS--------R 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-----~~~~~~--------~ 167 (210)
+.. +.++|.|+|+|.||. ..+++..+... -+.. .+.++.+..+.. ...-|+ +
T Consensus 423 ~~l---r~~iglV~QePvlF~~tI~eNI~~G~~d------at~~----~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 423 KWL---RSQIGLVSQEPVLFATTIRENIRYGKPD------ATRE----EIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred HHH---HhhcCeeeechhhhcccHHHHHhcCCCc------ccHH----HHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 222 268999999998764 34444444211 1111 122222222211 111111 4
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CH------HHHHHhhhhcCceeEEe
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVI 208 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~ 208 (210)
+|+++++ ++..|++++++|+|. |+ +.++. -...||+.+||
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd-~~~~grTTivV 544 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALD-KASKGRTTIVV 544 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHH-HhhcCCeEEEE
Confidence 7887755 468999999999987 32 23332 34558888887
No 312
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.58 E-value=3.2e-15 Score=140.26 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=100.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++++||+++|+||||||||||+++|+|..... ....|.+.++|.+.... ..++.++|++|++.+++.+++.
T Consensus 43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~---~~~~G~i~~~g~~~~~~--~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG---VKGSGSVLLNGMPIDAK--EMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcceeEEEECCEECCHH--HHhhhceeeccccccCccCcHH
Confidence 367778999999999999999999999999975321 11233344455443211 1235789999998776655544
Q ss_pred HcCCCCc-ccc-cccchhhhHHHHHHHHHHcchhhH--Hhh------hhHHHHHHh-------hccCccEEEEecCCC--
Q psy6983 129 LDQPITP-IKM-MERSIHSARWELTQCQICSQALMY--ENA------SRWSLTFQT-------MVQKTMLEVHLDQPI-- 189 (210)
Q Consensus 129 ~~~~~~~-~~~-~~~s~~e~~~~~~~~L~~~gl~~~--~~~------~~~s~~~~~-------~~~~Pdl~I~Ld~~~-- 189 (210)
.+..... ... .+.+..+....+.++++.+|+.+. ... ..+|++.++ ++..|++++.+||+.
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgL 197 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGL 197 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcch
Confidence 3331100 010 112334445578889999998621 111 247777654 467999999999987
Q ss_pred ------CHHHHHHhhhhcCceeEEe
Q psy6983 190 ------TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 190 ------~pe~~l~Ri~~R~r~~~~~ 208 (210)
....+++++.++|+.++++
T Consensus 198 D~~~~~~l~~~L~~l~~~g~tvi~~ 222 (617)
T TIGR00955 198 DSFMAYSVVQVLKGLAQKGKTIICT 222 (617)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3445667777778888775
No 313
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.7e-15 Score=127.31 Aligned_cols=139 Identities=14% Similarity=0.010 Sum_probs=95.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
.++.....-++||-|+||||||||+++++|+.. +.++|+.+.+... .-+++. .++++|||||+..|||+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k---~i~lp~---~~RriGYVFQDARLFpH 90 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEK---GIFLPP---EKRRIGYVFQDARLFPH 90 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccC---CcccCh---hhheeeeEeeccccccc
Confidence 555566656999999999999999999999853 5555555443211 111332 23789999999999999
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC------
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI------ 189 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~------ 189 (210)
+++..+..++.... +...|.++....|+. .-+.+..+|++.++ ++..|++++.+|+-.
T Consensus 91 ~tVrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 91 YTVRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred eEEecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99877765432211 334577777777877 44456679998755 467999988887754
Q ss_pred --CHHHHHHhhhhc
Q psy6983 190 --TPIKMMERSIHS 201 (210)
Q Consensus 190 --~pe~~l~Ri~~R 201 (210)
+---.+||++..
T Consensus 164 K~EilpylERL~~e 177 (352)
T COG4148 164 KREILPYLERLRDE 177 (352)
T ss_pred hhHHHHHHHHHHHh
Confidence 223346776654
No 314
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=4.6e-15 Score=150.80 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=104.6
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.|.+++++|+.......-.+|+++++||.+||+|+||||||||+++|.|+++ +.++|.++... + +.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i------~-~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI------G-LH 1356 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcccc------C-HH
Confidence 577888888887643333344667779999999999999999999999999864 44444444321 0 22
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-----hh--------hhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-----NA--------SRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-----~~--------~~~s~ 170 (210)
..++++++|+|++.+|+. +...+. .+ .+ ...+ +...++++.+++.++- .+ ..+|+
T Consensus 1357 ---~LR~~i~iVpQdp~LF~g-TIr~NL-dp----~~--~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1357 ---DLRFKITIIPQDPVLFSG-SLRMNL-DP----FS--QYSD-EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred ---HHHhcCeEECCCCcccCc-cHHHHc-Cc----cc--CCCH-HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 233789999999999874 433343 11 11 1122 2355566766665211 01 24777
Q ss_pred HHHh-------hccCccEEEEecCCC--C--HHHHHHhhhh---cCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--T--PIKMMERSIH---SARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~--pe~~l~Ri~~---R~r~~~~~~ 209 (210)
+.++ ++.+|+++|++|+|. | .|..+++..+ +++++++|-
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IA 1477 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIA 1477 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 7655 467999999999987 3 3344544432 478888873
No 315
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.2e-15 Score=128.37 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=97.5
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH---HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA---LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~ 106 (210)
+.+.+++++++....+++ +|+++.+|++++|+|+||||||||+++|+|+.... ...+..+.+.++|.++.. ...
T Consensus 46 l~i~nl~~~~~~~~iL~~--is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~-~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKG--VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI-KAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred EEEEEEEEEeCCeeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-CCCCCceEEEECCEEcccccccHH
Confidence 345666666655444444 55667999999999999999999999999985310 000112223333322210 011
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcc-----------cccccc-hhhhHHHHHHHHHHcchh----h--HHhhhhH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPI-----------KMMERS-IHSARWELTQCQICSQAL----M--YENASRW 168 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~-----------~~~~~s-~~e~~~~~~~~L~~~gl~----~--~~~~~~~ 168 (210)
..++.++|++|++.+++. +...+...... ...... ....+..+.++++.+++. . ...+.++
T Consensus 123 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 123579999999765542 22222211000 000111 112234567788888763 1 1224567
Q ss_pred HHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEe
Q psy6983 169 SLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVI 208 (210)
Q Consensus 169 s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~ 208 (210)
|+++++ ++..|+++|++||+. |+. ..+.++.+ ++.++++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiiv 255 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVV 255 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 877654 467999999999987 332 33334433 4666665
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-14 Score=130.29 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=107.1
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.+.+++++|+.+.......+|+++++||.|||+|+|||||||+++.|+|.++ +...|.++....+ +
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-------~ 408 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-------Q 408 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-------h
Confidence 456788888888887666667888889999999999999999999999999765 4444444332211 1
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-----hh--------hHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-----AS--------RWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-----~~--------~~s~ 170 (210)
+ .++.++++.|...+|.. +...+... ..+..+| +...++++++|+.++.. +. .+||
T Consensus 409 ~---~~e~i~vl~Qr~hlF~~-Tlr~NL~l------A~~~AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG 477 (573)
T COG4987 409 A---LRETISVLTQRVHLFSG-TLRDNLRL------ANPDASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG 477 (573)
T ss_pred h---HHHHHhhhccchHHHHH-HHHHHHhh------cCCCCCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence 1 23578999999888753 11222111 1122334 45677889999872211 11 4566
Q ss_pred HHHh-------hccCccEEEEecCCC-----CHHHHHHhhhhc--CceeEEe
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIHS--ARFVLVI 208 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R--~r~~~~~ 208 (210)
+.++ ++....+.|.+|||. +-+..++++.++ ++++++|
T Consensus 478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v 529 (573)
T COG4987 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV 529 (573)
T ss_pred hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE
Confidence 6544 356788888888887 455677888765 4477765
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.57 E-value=6.2e-15 Score=116.51 Aligned_cols=114 Identities=9% Similarity=-0.053 Sum_probs=74.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+||||||||||+++|+|+.... .+.+.+++ .+.++|++|++.+++ .+...
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~G~i~~~~----------~~~i~~~~q~~~~~~-~tv~~ 82 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG------SGRIGMPE----------GEDLLFLPQRPYLPL-GTLRE 82 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CceEEECC----------CceEEEECCCCcccc-ccHHH
Confidence 56777999999999999999999999999986432 22222222 157899999975432 23333
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHH-------HHHhhccCccEEEEecCCC--C---HHHHHHh
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSL-------TFQTMVQKTMLEVHLDQPI--T---PIKMMER 197 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~-------~~~~~~~~Pdl~I~Ld~~~--~---pe~~l~R 197 (210)
+.... ...++|+ ..++++..|++++.+||+. | .+.+.+.
T Consensus 83 nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~ 133 (166)
T cd03223 83 QLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133 (166)
T ss_pred Hhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHH
Confidence 22110 0122333 3344678999999999987 3 3444566
Q ss_pred hhhcCceeEEee
Q psy6983 198 SIHSARFVLVIE 209 (210)
Q Consensus 198 i~~R~r~~~~~~ 209 (210)
+.+.++.++++.
T Consensus 134 l~~~~~tiiivs 145 (166)
T cd03223 134 LKELGITVISVG 145 (166)
T ss_pred HHHhCCEEEEEe
Confidence 666677777763
No 318
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=3.5e-15 Score=150.62 Aligned_cols=175 Identities=11% Similarity=0.020 Sum_probs=111.0
Q ss_pred ccCCCccccccCCCCC---------C--ccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccccccc
Q psy6983 29 SVPFCFLCASQNHNST---------G--KRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVK 97 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~ 97 (210)
.+.|.+++|.++.... . ..-.+|+.+++|++++|+||||||||||+++|+|.... | +..|.+.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~---g-~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---G-YIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC---C-cccceEEEC
Confidence 4557788877653211 1 11237888899999999999999999999999997431 1 233444555
Q ss_pred CcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCc-ccc-cccchhhhHHHHHHHHHHcchhhHHhh-------hhH
Q psy6983 98 GHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITP-IKM-MERSIHSARWELTQCQICSQALMYENA-------SRW 168 (210)
Q Consensus 98 ~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~-~~~-~~~s~~e~~~~~~~~L~~~gl~~~~~~-------~~~ 168 (210)
|.+.... ..++.+||++|+..+++.+++..+..... ... .+.+..+....+.++++.+|+.+..+- ..+
T Consensus 943 G~~~~~~--~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 943 GFPKKQE--TFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred CccCChH--HhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 5443111 11256899999977665544443331100 011 011233334567889999998743221 368
Q ss_pred HHHHHh-------hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 169 SLTFQT-------MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 169 s~~~~~-------~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
|+++++ ++..|++++.+||+. .-...++++.++|+.++++.
T Consensus 1021 SgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~ 1076 (1470)
T PLN03140 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1076 (1470)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 888765 467999988888886 33455667777899888763
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=99.57 E-value=3e-14 Score=132.97 Aligned_cols=162 Identities=13% Similarity=-0.003 Sum_probs=99.6
Q ss_pred CccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecc----ccccc--cccCcchHHHH
Q psy6983 33 CFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP----VNLWR--DVKGHNLLALM 105 (210)
Q Consensus 33 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~----~~~~~--~~~~~~~l~~~ 105 (210)
..++++|+.+. .+.+++ ++++|++++|+||||||||||+|+|+|...+. .|+. .++.. .++|.++...+
T Consensus 77 ~~~~~~yg~~~~~L~~l~---~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP---IPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred cCceEEecCCceeEecCC---cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHH
Confidence 33667777653 555654 57999999999999999999999999986432 1221 11100 13444432221
Q ss_pred ---HhcccceeeeehhhHhhhHH---HHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh---
Q psy6983 106 ---YENASRWSLTFQTMVQKTML---EVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT--- 174 (210)
Q Consensus 106 ---~~~~~~~~~vfQ~~~l~~~~---~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~--- 174 (210)
.....++++.+|.....+.+ ++.... . ..+.+..+.++++.+|+. ......++|+++++
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l--------~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELL--------K--KVDERGKLDEVVERLGLENILDRDISELSGGELQRVA 222 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHH--------H--hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 11123456666654433322 111111 0 112345678888988886 33455678888765
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..+.++.+ ++.+++|+
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivs 268 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVE 268 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 467999999999987 443 44555655 89999986
No 320
>PTZ00243 ABC transporter; Provisional
Probab=99.57 E-value=5.8e-15 Score=150.16 Aligned_cols=162 Identities=17% Similarity=0.070 Sum_probs=105.3
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.|.+++++|........-.+|+++++||.|||+|+||||||||+++|.|+++ |.++|.++... + +.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i------~-l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY------G-LR 1380 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC------C-HH
Confidence 577888888886643333444677779999999999999999999999999865 33444443321 1 23
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h----h--------hhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N----A--------SRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~----~--------~~~s~ 170 (210)
. .++.+++|+|++.+|+. ++..++. + .+ ..++ +.+.++++.+|+.++- . + ..+|+
T Consensus 1381 ~---LR~~I~iVpQdp~LF~g-TIreNId-p----~~--~~sd-eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSg 1448 (1560)
T PTZ00243 1381 E---LRRQFSMIPQDPVLFDG-TVRQNVD-P----FL--EASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448 (1560)
T ss_pred H---HHhcceEECCCCccccc-cHHHHhC-c----cc--CCCH-HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCH
Confidence 2 33789999999998864 4444431 1 11 1122 3466777777775221 0 1 25787
Q ss_pred HHHh-------hccC-ccEEEEecCCC----CHHHHHHhhh---hcCceeEEee
Q psy6983 171 TFQT-------MVQK-TMLEVHLDQPI----TPIKMMERSI---HSARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~-Pdl~I~Ld~~~----~pe~~l~Ri~---~R~r~~~~~~ 209 (210)
+.++ ++.+ |.++|++|+|. ..|..+++.. .+++++|+|-
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IA 1502 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 7755 3554 89999999987 2344554443 3578888873
No 321
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.57 E-value=4.3e-15 Score=136.46 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=93.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh---Hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---VQ 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~l 121 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++..+ +. .. ..++.++|++|++ .+
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~------~~-~~--~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL------ST-AQ--RLARGLVYLPEDRQSSGL 352 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC------CH-HH--HHhCCcEECCCChhhCCc
Confidence 677789999999999999999999999999853 33333333210 10 11 1125689999984 24
Q ss_pred hhHHHHHHcCCC---CcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 122 KTMLEVHLDQPI---TPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 122 ~~~~~~~~~~~~---~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
++.++...+... ...... ......+..+.++++.+|+. . ...+.++|+++++ ++..|+++|++||+
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFW-IKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccc-cChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 433222222110 000010 11122334577889999984 2 3345788988765 45799999999998
Q ss_pred C--CH------HHHHHhhhhcCceeEEee
Q psy6983 189 I--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 189 ~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
. |+ ...+.++.++|..++++.
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7 32 345556666788888874
No 322
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.56 E-value=4.3e-15 Score=118.91 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=74.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhh---Hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---VQ 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~l 121 (210)
+|+++++|++++|+||||||||||+++|+|... +.+.++++..+ + ... ..++.++|+||++ .+
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------~-~~~--~~~~~i~~~~q~~~~~~~ 89 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRR------S-PRD--AIRAGIAYVPEDRKREGL 89 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc------C-HHH--HHhCCeEEecCCcccCcc
Confidence 566679999999999999999999999999854 33333332211 0 011 1235789999984 23
Q ss_pred hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CHH------H
Q psy6983 122 KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TPI------K 193 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~pe------~ 193 (210)
++..+...+... ... +. .-..+.....++++..|++++++||+. |++ .
T Consensus 90 ~~~~t~~e~l~~----------------~~~------LS--~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 145 (182)
T cd03215 90 VLDLSVAENIAL----------------SSL------LS--GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145 (182)
T ss_pred cCCCcHHHHHHH----------------Hhh------cC--HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHH
Confidence 332222221100 000 00 000011123344678999999999987 333 4
Q ss_pred HHHhhhhcCceeEEee
Q psy6983 194 MMERSIHSARFVLVIE 209 (210)
Q Consensus 194 ~l~Ri~~R~r~~~~~~ 209 (210)
+++++.++++.++++.
T Consensus 146 ~l~~~~~~~~tiii~s 161 (182)
T cd03215 146 LIRELADAGKAVLLIS 161 (182)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 5556666688888763
No 323
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.56 E-value=7e-15 Score=148.74 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=103.0
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccccccc-CcchHH-HH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVK-GHNLLA-LM 105 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~-~~~~l~-~~ 105 (210)
.+.|.+++++|+... ....-.+|+++++|++++|+||||||||||+++|+|++++. .|.+.++ +.++.. ..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~------~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT------EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC------CCeEEEeCCcchhhCCH
Confidence 466777777776432 11223366777999999999999999999999999986532 2222221 122110 01
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccc-----------------------------------------------
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKM----------------------------------------------- 138 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~----------------------------------------------- 138 (210)
...++.++||+|++.+++. +...++..+....
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 1123679999999988753 3333322110000
Q ss_pred cc--c-chhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh-------hccCccEEEEecCCC--CH--
Q psy6983 139 ME--R-SIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT-------MVQKTMLEVHLDQPI--TP-- 191 (210)
Q Consensus 139 ~~--~-s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~p-- 191 (210)
.+ . ......+.+.++++.+++.++ ....++|+++++ ++..|+++|++|++. |+
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 00 0 000112346667777766532 112467888755 467999999999987 32
Q ss_pred ----HHHHHhhhh-cCceeEEee
Q psy6983 192 ----IKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 192 ----e~~l~Ri~~-R~r~~~~~~ 209 (210)
...++++.+ +||++++|.
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIs 637 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIA 637 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEe
Confidence 244555554 589998874
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.8e-15 Score=135.32 Aligned_cols=155 Identities=10% Similarity=-0.090 Sum_probs=98.5
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++|+.....++ +|+++++|++++|+||||||||||+++|+|.... ..|.+.+++ .
T Consensus 320 l~~~~l~~~~~~~~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p------~~G~i~~~~----------~ 381 (530)
T PRK15064 320 LEVENLTKGFDNGPLFKN--LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP------DSGTVKWSE----------N 381 (530)
T ss_pred EEEEeeEEeeCCceeecC--cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCeEEEECC----------c
Confidence 345666666665444444 5667799999999999999999999999998543 222222222 1
Q ss_pred cceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hcc
Q psy6983 110 SRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 110 ~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~ 177 (210)
.+++|++|++. +.+.++...+... .... .+....+.++++.+|+. ....+.++|+++++ ++.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~-----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQ-----WRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHH-----hccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 56899999863 3222222221100 0001 12234577889999883 23446788988765 467
Q ss_pred CccEEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 178 KTMLEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 178 ~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
.|++++.+||+. .-+.+++-+.+.+..++++
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 491 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFV 491 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999987 3445555555555666665
No 325
>KOG0056|consensus
Probab=99.55 E-value=7.1e-15 Score=131.49 Aligned_cols=168 Identities=14% Similarity=0.053 Sum_probs=95.2
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHh
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~ 107 (210)
.+.|+++++.|++...+ .-++||++.+|+.+|++||||+||||++|+|.++.++. .|.+.++|+++.. ....
T Consensus 537 ~i~fsnvtF~Y~p~k~v-l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~------sGsI~iDgqdIrnvt~~S 609 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPV-LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN------SGSITIDGQDIRNVTQSS 609 (790)
T ss_pred eEEEEEeEEecCCCCce-eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc------CceEEEcCchHHHHHHHH
Confidence 34577777666654322 23367888999999999999999999999999987653 2333344444421 2223
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHH--HHHHHHHH-cchh-hHHhh-----hhHHHHHH-----
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARW--ELTQCQIC-SQAL-MYENA-----SRWSLTFQ----- 173 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~--~~~~~L~~-~gl~-~~~~~-----~~~s~~~~----- 173 (210)
.++.||.|+|+..||+. ++..++.+..... +.+|..+ +++++.++ .+.. .|+.- -++||+.+
T Consensus 610 LRs~IGVVPQDtvLFNd-TI~yNIryak~~A---sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLFND-TILYNIRYAKPSA---SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHhcCcccCcceeecc-eeeeheeecCCCC---ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 45789999999987653 2222332211111 2222211 22222221 1111 12211 13455543
Q ss_pred --hhccCccEEEEecCCC----CHHH----HHHhhhhcCceeEEe
Q psy6983 174 --TMVQKTMLEVHLDQPI----TPIK----MMERSIHSARFVLVI 208 (210)
Q Consensus 174 --~~~~~Pdl~I~Ld~~~----~pe~----~l~Ri~~R~r~~~~~ 208 (210)
..++.|.+++.+|+|. +.|+ ++.|+-. ||+.+||
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVv 729 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVV 729 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEE
Confidence 4578999877777765 3444 4455543 6777766
No 326
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.55 E-value=1.6e-14 Score=146.63 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=103.3
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC----cceeeccccccccccCcchHHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
++.|.+++++|........-.+|+++++||.+||+|+||||||||+++|.|+.+ +.++|.++... + +..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i------~-~~~ 1289 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSV------T-LQT 1289 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccC------C-HHH
Confidence 567888888887643333444677779999999999999999999999999853 33333333210 0 232
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-Hhh------------hhHHHH
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-ENA------------SRWSLT 171 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~~~------------~~~s~~ 171 (210)
.++++++++|++.+|+. +...+. .+ .+ ...+ +...++++.+++.++ ... ..+|++
T Consensus 1290 ---lR~~is~IpQdp~LF~G-TIR~NL-dp----~~--~~td-eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgG 1357 (1490)
T TIGR01271 1290 ---WRKAFGVIPQKVFIFSG-TFRKNL-DP----YE--QWSD-EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNG 1357 (1490)
T ss_pred ---HHhceEEEeCCCccCcc-CHHHHh-Cc----cc--CCCH-HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHH
Confidence 33789999999998864 333333 11 11 1122 346677888877621 111 146777
Q ss_pred HHh-------hccCccEEEEecCCC--C--HHHHH-Hhhhh--cCceeEEe
Q psy6983 172 FQT-------MVQKTMLEVHLDQPI--T--PIKMM-ERSIH--SARFVLVI 208 (210)
Q Consensus 172 ~~~-------~~~~Pdl~I~Ld~~~--~--pe~~l-~Ri~~--R~r~~~~~ 208 (210)
.++ ++.+|+++|++|+|. | .+..+ +.|++ +++++++|
T Consensus 1358 QrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271 1358 HKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 654 567999999999987 2 23333 33433 46788876
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.2e-15 Score=121.13 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=107.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.++++++++...+++++ -++++||-.+|+||||||||||++++++... +.+.|++.... +..
T Consensus 32 i~l~~v~v~r~gk~iL~~is--W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~------~~~-- 101 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLS--WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG------ETI-- 101 (257)
T ss_pred EEecceEEEECCEeeccccc--eeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC------cch--
Confidence 44677788888877777665 4569999999999999999999999999743 44445544321 111
Q ss_pred HHhcccceeeeehhhH-hhh----HHHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHH---
Q psy6983 105 MYENASRWSLTFQTMV-QKT----MLEVHLDQPITPIKMME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQ--- 173 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~-l~~----~~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~--- 173 (210)
++.+++||+|.-.-. -+. ..+++.........++. ....++..++..+++.+|+. .-+.|..+|.+.+
T Consensus 102 -~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 102 -FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred -HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 244578999854321 122 22233333333333333 44455667888999999998 4555677777654
Q ss_pred ----hhccCccEEEEecCCC-----CHHHHHHhhhhcC
Q psy6983 174 ----TMVQKTMLEVHLDQPI-----TPIKMMERSIHSA 202 (210)
Q Consensus 174 ----~~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~ 202 (210)
+++..|.++|.+|++. ..+.+++|+.+-.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~ 218 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHh
Confidence 4578999999999987 5667888876543
No 328
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.54 E-value=7.8e-15 Score=127.76 Aligned_cols=135 Identities=15% Similarity=0.083 Sum_probs=87.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcc
Q psy6983 62 VEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPI 136 (210)
Q Consensus 62 IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~ 136 (210)
|+||||||||||+++|+|+.. +.+.|+++.. .. ...++++|+||++.+++.++...+.... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~---------~~---~~~~~i~~v~q~~~l~~~~tv~enl~~~-~ 67 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN---------VP---PHLRHINMVFQSYALFPHMTVEENVAFG-L 67 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC---------CC---HHHCCEEEEecCccccCCCcHHHHHHHH-H
Confidence 589999999999999999854 3333333321 01 1126799999998877665554443211 1
Q ss_pred cccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhh
Q psy6983 137 KMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSI 199 (210)
Q Consensus 137 ~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~ 199 (210)
.....+..+....+.++++.+|+. ....+.++|+++++ ++..|++++++||+. |+. ..+.++.
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 68 KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 111122233345678889999887 33445778888765 467999999999987 333 4455555
Q ss_pred hc-CceeEEee
Q psy6983 200 HS-ARFVLVIE 209 (210)
Q Consensus 200 ~R-~r~~~~~~ 209 (210)
++ |++++++.
T Consensus 148 ~~~g~tiiivT 158 (325)
T TIGR01187 148 EQLGITFVFVT 158 (325)
T ss_pred HhcCCEEEEEe
Confidence 44 88888774
No 329
>KOG0057|consensus
Probab=99.54 E-value=3.1e-14 Score=128.57 Aligned_cols=160 Identities=16% Similarity=0.028 Sum_probs=99.8
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.|.++..+|++.. .++. +|+++++||-+||+|+|||||||++|+|.++.+ +.++|.++.. -
T Consensus 351 ~I~F~dV~f~y~~k~~iL~g--vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~----------~ 418 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKG--VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKE----------V 418 (591)
T ss_pred cEEEEeeEEEeCCCCceecc--eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhh----------h
Confidence 567788877777654 4444 567779999999999999999999999999864 3344443331 1
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-HH----hhh--------hHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-YE----NAS--------RWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-~~----~~~--------~~s~ 170 (210)
.....++-||+|||+..||+. +++.++.++.. ..++ +.+.+++++.|+-+ +. -|. .+|+
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~------sas~-eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSG 490 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNP------SASD-EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSG 490 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCC------CcCH-HHHHHHHHHcCcHHHHHhccccchhhHhhccccccc
Confidence 122334779999999988753 34444433222 2222 23444445555531 11 111 2444
Q ss_pred H-------HHhhccCccEEEEecCCC----CHHHHHHhh---hhcCceeEEe
Q psy6983 171 T-------FQTMVQKTMLEVHLDQPI----TPIKMMERS---IHSARFVLVI 208 (210)
Q Consensus 171 ~-------~~~~~~~Pdl~I~Ld~~~----~pe~~l~Ri---~~R~r~~~~~ 208 (210)
+ ++++++.|++++++|+|. +.|.-+-|. ..++|+++.|
T Consensus 491 GekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I 542 (591)
T KOG0057|consen 491 GEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMI 542 (591)
T ss_pred chHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE
Confidence 4 355688999999999987 333333333 3578888765
No 330
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.1e-14 Score=131.32 Aligned_cols=151 Identities=10% Similarity=0.044 Sum_probs=92.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH---h
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV---Q 121 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~---l 121 (210)
+|+++++|++++|+||||||||||+++|+|+.. +.+.++++... +... ..++.++|++|+.. +
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~------~~~~---~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH------NANE---AINHGFALVTEERRSTGI 337 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC------CHHH---HHHCCCEEcCCchhhCCc
Confidence 567779999999999999999999999999853 33444333210 1111 11256899999852 3
Q ss_pred hhHHHHHHcCCCC----cccccc-cchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEec
Q psy6983 122 KTMLEVHLDQPIT----PIKMME-RSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLD 186 (210)
Q Consensus 122 ~~~~~~~~~~~~~----~~~~~~-~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld 186 (210)
++.++...+.... ...... .........+.++++.+++. ....+.++|+++++ ++..|+++|++|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE 417 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3322211110000 000001 01122334567788888874 24456688988865 467999999999
Q ss_pred CCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 187 QPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 187 ~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+. |+. ..++++.++++.++++.
T Consensus 418 Pt~gLD~~~~~~~~~~l~~l~~~~~tvi~vs 448 (491)
T PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448 (491)
T ss_pred CCcccChhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 987 333 33556677899988874
No 331
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.53 E-value=5.1e-14 Score=128.72 Aligned_cols=159 Identities=14% Similarity=0.006 Sum_probs=90.1
Q ss_pred CCccccccCCCCC-CccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 32 FCFLCASQNHNST-GKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
+.+++++++.... ...-.+|+++.+|++++|+||||||||||+++|+|+..+ ..|.+.++|.+ .
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P------~sGeI~I~G~~---------~ 88 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP------NKGTVDIKGSA---------A 88 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC------CceEEEECCEe---------e
Confidence 4455555544311 112336777799999999999999999999999998643 22222333321 0
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccE
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl 181 (210)
.+++.+....-++..+.+.... .....+..+....+.++++.+++.+ ...+.++|+++++ ++..|++
T Consensus 89 ~i~~~~~l~~~lTV~EnL~l~~----~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 89 LIAISSGLNGQLTGIENIELKG----LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred eEEeccccCCCCcHHHHHHhhh----hhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 0111100000012222221110 0011122333345677888888863 3345678888755 4679999
Q ss_pred EEEecCCC--CHH---H---HHHhhhhcCceeEEee
Q psy6983 182 EVHLDQPI--TPI---K---MMERSIHSARFVLVIE 209 (210)
Q Consensus 182 ~I~Ld~~~--~pe---~---~l~Ri~~R~r~~~~~~ 209 (210)
+|++||+. |+. . .+.++.++|+.++++.
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVS 200 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS 200 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999987 554 2 4444456688888874
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.53 E-value=2.1e-14 Score=133.96 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=94.1
Q ss_pred ccCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHH
Q psy6983 29 SVPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMY 106 (210)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~ 106 (210)
.+.+.+++++|+.. ...++ +|+++++|+.++|+||||||||||+++|+|+.++. .|.+.++|.++.. ...
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~--i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~------~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFD--VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT------VGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCCCCccccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC------CCEEEECCEEhhhCCHH
Confidence 46677888777643 23333 66777999999999999999999999999986431 1222222222110 001
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-------------HHhhhhHHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-------------YENASRWSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-------------~~~~~~~s~~~~ 173 (210)
..++.++|++|++.+++. +...+...... +.+ + +...++++.+++.+ -.....+|++++
T Consensus 406 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~---~~~---~-~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFNR-SIRENIRLGRE---GAT---D-EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred HHHhheEEEccCCccCcc-cHHHHHhcCCC---CCC---H-HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 123678999999987652 33333321100 111 1 11223333333321 111234777765
Q ss_pred h-------hccCccEEEEecCCC--CHH---HHHHhhh--hcCceeEEe
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TPI---KMMERSI--HSARFVLVI 208 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~--~R~r~~~~~ 208 (210)
+ ++..|+++|++|++. |++ ...+.+. ..++++++|
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~i 526 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII 526 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4 568999999999987 332 2233333 247888876
No 333
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.53 E-value=3.4e-14 Score=113.60 Aligned_cols=30 Identities=30% Similarity=0.225 Sum_probs=27.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+|+++++|++++|+||||||||||++++.+
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 677789999999999999999999999964
No 334
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.3e-14 Score=114.80 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=90.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
..++..|+....-.+ +||.+.+||+++|+|+||||||||+++|++.+. +.+.-.. .++.++......+..+-
T Consensus 10 ~~lsk~Yg~~~gc~~--vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~-~~~~dl~~msEaeRR~L 86 (258)
T COG4107 10 SGLSKLYGPGKGCRD--VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRD-GQPRDLYTMSEAERRRL 86 (258)
T ss_pred hhhhhhhCCCcCccc--cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCC-CCchhHhhhchHHHHHH
Confidence 445555555433333 566779999999999999999999999999753 2221111 11111111111222333
Q ss_pred cccceeeeehhhHhhhHHH--HHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLE--VHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTM------- 175 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~--~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~------- 175 (210)
.+..||+|-|++.---++. ...++-+....+-.|.....+..+.++|+++.+. .-..+..+|++|++.
T Consensus 87 ~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnL 166 (258)
T COG4107 87 LRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHh
Confidence 4567999999974211111 1122211112222344445666788899999886 223356789988764
Q ss_pred ccCccEEEEecCCC
Q psy6983 176 VQKTMLEVHLDQPI 189 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~ 189 (210)
+..|.+++.+|+|-
T Consensus 167 Vt~PrLvfMDEPTG 180 (258)
T COG4107 167 VTRPRLVFMDEPTG 180 (258)
T ss_pred ccCCceEEecCCCC
Confidence 56999977777764
No 335
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=1.3e-14 Score=116.57 Aligned_cols=168 Identities=14% Similarity=0.011 Sum_probs=111.5
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceee-ccccccccccCcchHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYA-EPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~-~~~~~~~~~~~~~~l~~ 104 (210)
...+++++++...++.+++++ +.+||+-+|+|||||||||++..|.|.-. +.+.+ .++.++ +.
T Consensus 7 ~~~~vsVsF~GF~Aln~ls~~--v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~---------~e 75 (249)
T COG4674 7 YLDGVSVSFGGFKALNDLSFS--VDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL---------PE 75 (249)
T ss_pred EEeceEEEEcceeeeeeeEEE--ecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC---------CH
Confidence 357888899999888776555 59999999999999999999999999743 22322 233222 22
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCC-----CCcc--cccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHhh
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQP-----ITPI--KMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQTM 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~-----~~~~--~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~~ 175 (210)
....+..||--||.|..|..+++..+.. .... .++.+...+.+.++.++|...||.+ ......+|.+..++
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh
Confidence 2333466788899997666555444332 1111 2233444555678999999999983 33445567666554
Q ss_pred -------ccCccEEEEecCCC---CHH-----HHHHhhhhcCceeEEeeC
Q psy6983 176 -------VQKTMLEVHLDQPI---TPI-----KMMERSIHSARFVLVIEK 210 (210)
Q Consensus 176 -------~~~Pdl~I~Ld~~~---~pe-----~~l~Ri~~R~r~~~~~~~ 210 (210)
++.|+++..+||.. +.| .+++++ ++.+.++|||.
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l-a~~hsilVVEH 204 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL-AGKHSILVVEH 204 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH-hcCceEEEEec
Confidence 57999987777765 222 344444 56788999883
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=2.4e-14 Score=132.87 Aligned_cols=158 Identities=11% Similarity=-0.081 Sum_probs=96.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++++.....++ +|+++++|++++|+||||||||||+++|+|+.... .|.+.+.+ +
T Consensus 325 l~~~~l~~~~~~~~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~------~G~i~~~~-~--------- 386 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDD--LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD------SGTIKIGE-T--------- 386 (556)
T ss_pred EEEEeEEEEECCeeeecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CeEEEECC-c---------
Confidence 345666666655444444 56667999999999999999999999999986432 22222211 1
Q ss_pred cceeeeehhh-HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccC
Q psy6983 110 SRWSLTFQTM-VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 110 ~~~~~vfQ~~-~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.+++|++|+. .+++.++...+..... ........+ ..+.+++..+|+. . ...+.++|+++++ ++..
T Consensus 387 ~~i~~v~q~~~~~~~~~tv~e~l~~~~-~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 387 VKLAYVDQSRDALDPNKTVWEEISGGL-DIIKVGNRE--IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred eEEEEEeCchhhcCCCCCHHHHHHhhc-ccccccccH--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 2589999986 4444333333221100 001111111 2345678888885 2 3446789998765 4579
Q ss_pred ccEEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 179 TMLEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 179 Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
|+++|++||+. ..+.+.+-|.+....++++
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 498 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVI 498 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999987 3344445454444466655
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.52 E-value=2.7e-14 Score=132.44 Aligned_cols=158 Identities=11% Similarity=-0.080 Sum_probs=96.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++++....+++ +|+++++|++++|+||||||||||+++|+|+.... .|.+.+.+ +
T Consensus 323 l~~~~l~~~~~~~~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~------~G~i~~~~-~--------- 384 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDD--LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD------SGTIKIGE-T--------- 384 (552)
T ss_pred EEEeeEEEEECCeeeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC------CeEEEECC-c---------
Confidence 345666666655444444 56667999999999999999999999999986432 22222211 1
Q ss_pred cceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccC
Q psy6983 110 SRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 110 ~~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.+++|++|++. +++.++...+..... ........+ ..+.+++..+|+. . ...+.++|+++++ ++..
T Consensus 385 ~~i~~v~q~~~~~~~~~tv~e~l~~~~-~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 385 VKLAYVDQSRDALDPNKTVWEEISGGL-DIIQLGKRE--VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred eEEEEEeCCccccCCCCcHHHHHHhhc-cccccCcch--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 25899999863 443333332221110 000111111 2345678888885 2 3446789998765 4679
Q ss_pred ccEEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 179 TMLEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 179 Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
|+++|++||+. .-+.+++-|.+-+..++++
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viiv 496 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVI 496 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 99999999987 3344445555444466665
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.51 E-value=6.1e-14 Score=112.26 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=66.7
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQ 131 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~ 131 (210)
+++++|++++|+||||||||||+++|+|+... ..+.+.+++ ..+++++|+..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p------~~G~i~~~g-----------~~i~~~~q~~~----------- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP------NGDNDEWDG-----------ITPVYKPQYID----------- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCC------CCcEEEECC-----------EEEEEEcccCC-----------
Confidence 56799999999999999999999999998643 233333332 24788888542
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CHHH------HHHhhhhcC-
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TPIK------MMERSIHSA- 202 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~- 202 (210)
.|..+. +.....++++..|++++.+|++. |++. .+.++.+++
T Consensus 72 ---------LSgGq~--------------------qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~ 122 (177)
T cd03222 72 ---------LSGGEL--------------------QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK 122 (177)
T ss_pred ---------CCHHHH--------------------HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 111111 11112344677999999999987 4432 455555564
Q ss_pred ceeEEee
Q psy6983 203 RFVLVIE 209 (210)
Q Consensus 203 r~~~~~~ 209 (210)
+.++++.
T Consensus 123 ~tiiivs 129 (177)
T cd03222 123 KTALVVE 129 (177)
T ss_pred CEEEEEE
Confidence 7888774
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.51 E-value=3e-14 Score=132.94 Aligned_cols=136 Identities=14% Similarity=-0.037 Sum_probs=89.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++.+||+++|+||||||||||+++|+|+... ..|.+.++ .+++|++|+..+.+..++..
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p------~~G~I~~~------------~~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP------DEGEVDPE------------LKISYKPQYIKPDYDGTVED 419 (590)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CceEEEEe------------eeEEEecccccCCCCCcHHH
Confidence 5777899999999999999999999999998643 22222211 25899999875443333322
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
+.... .... . ......++++.+|+. ....+.++|+++++ ++..|++++++||+. |++
T Consensus 420 ~l~~~-~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~ 493 (590)
T PRK13409 420 LLRSI-TDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493 (590)
T ss_pred HHHHH-hhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 22110 0000 1 112457788888887 34445678998765 467999999999987 333
Q ss_pred HHHHhhhh-cCceeEEee
Q psy6983 193 KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~-R~r~~~~~~ 209 (210)
..++++.+ +++.+++|.
T Consensus 494 ~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 494 KAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 33555544 478888875
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.50 E-value=3.9e-14 Score=133.36 Aligned_cols=157 Identities=11% Similarity=-0.074 Sum_probs=95.8
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
.+.+++++|+.....++ +|+++.+|++++|+||||||||||+++|+|...+ ..|.+.+ |.+ -
T Consensus 321 ~~~~l~~~~~~~~il~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p------~~G~i~~-~~~---------~ 382 (635)
T PRK11147 321 EMENVNYQIDGKQLVKD--FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA------DSGRIHC-GTK---------L 382 (635)
T ss_pred EEeeeEEEECCeEEEcC--cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC------CCcEEEE-CCC---------c
Confidence 35666666655433444 5666799999999999999999999999998543 2222222 111 2
Q ss_pred ceeeeehhh-HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCc
Q psy6983 111 RWSLTFQTM-VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 111 ~~~~vfQ~~-~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~P 179 (210)
+++|++|+. .+++.+++..+....... .. .......+.+++..+++. ....+..+|+++++ ++..|
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p 459 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQE-VM--VNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPS 459 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccc-cc--ccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 589999975 344433333222110000 00 011123467788888874 23456789998865 35799
Q ss_pred cEEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 180 MLEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 180 dl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
+++|++||+. ..+.+.+-+..-+..+++|
T Consensus 460 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~v 493 (635)
T PRK11147 460 NLLILDEPTNDLDVETLELLEELLDSYQGTVLLV 493 (635)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 9999999987 3333444444435567766
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=9e-14 Score=114.95 Aligned_cols=146 Identities=14% Similarity=-0.002 Sum_probs=90.8
Q ss_pred CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh
Q psy6983 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK 122 (210)
Q Consensus 43 ~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~ 122 (210)
.++++ +||++.+||.++|+|+||||||||+|+|+|.+.+. .|....+|.- .. ... -..||-+|.
T Consensus 41 ~aL~d--isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt------~G~v~v~G~v-~~-li~--lg~Gf~pel---- 104 (249)
T COG1134 41 WALKD--ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT------SGKVKVTGKV-AP-LIE--LGAGFDPEL---- 104 (249)
T ss_pred EEecC--ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC------CceEEEcceE-eh-hhh--cccCCCccc----
Confidence 34444 56677999999999999999999999999986542 2333322210 00 000 122443332
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh--hhhHHHHHHhh-------ccCccEEEEecCCC--C-
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN--ASRWSLTFQTM-------VQKTMLEVHLDQPI--T- 190 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~--~~~~s~~~~~~-------~~~Pdl~I~Ld~~~--~- 190 (210)
+.++++... ..+++.+..+..+++.+..+..+|.++.+ ...+|.+|..+ ...||++|.+|+-. |
T Consensus 105 TGreNi~l~----~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 105 TGRENIYLR----GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred chHHHHHHH----HHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 222322221 23445566777778888888887774433 34567777654 35999999999865 3
Q ss_pred --HHHHHHhhhhc---CceeEEe
Q psy6983 191 --PIKMMERSIHS---ARFVLVI 208 (210)
Q Consensus 191 --pe~~l~Ri~~R---~r~~~~~ 208 (210)
-+.|.+|+.++ ++.+++|
T Consensus 181 ~F~~K~~~rl~e~~~~~~tiv~V 203 (249)
T COG1134 181 AFQEKCLERLNELVEKNKTIVLV 203 (249)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE
Confidence 36788888765 6555554
No 342
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=3.3e-14 Score=119.32 Aligned_cols=97 Identities=15% Similarity=0.021 Sum_probs=72.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+||++++||+++|+|+||||||||.|+|.|+.++ ..|.+.|+|.++.. +.
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p------t~G~i~f~g~~i~~--------~~---------------- 81 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP------TSGEILFEGKDITK--------LS---------------- 81 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC------CCceEEEcCcchhh--------cc----------------
Confidence 5677799999999999999999999999998643 44444444433111 00
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCccEEEEecCCC
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLDQPI 189 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~ 189 (210)
..+..+++.++|+.+|+. .++.++++|+++++ ++..|+++|.+|++.
T Consensus 82 -------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 82 -------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred -------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 334456789999999987 45667789998755 467999999999876
No 343
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.50 E-value=4.7e-14 Score=119.55 Aligned_cols=138 Identities=14% Similarity=-0.001 Sum_probs=81.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh---hHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK---TMLE 126 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~---~~~~ 126 (210)
+|+++++|++++|+||||||||||+++|+|+..+. .|.+.++| .+++++|...+. +..+
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~------~G~I~~~g------------~~~~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT------VGKVDRNG------------EVSVIAISAGLSGQLTGIE 104 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC------ceEEEECC------------EEeEEecccCCCCCCcHHH
Confidence 77778999999999999999999999999986432 22222222 123333433221 1222
Q ss_pred HHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH---
Q psy6983 127 VHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI--- 192 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe--- 192 (210)
.+.... ........+....+.++++.+++.+ .....++|+++++ ++..|++++.+||+. |++
T Consensus 105 nl~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~ 180 (264)
T PRK13546 105 NIEFKM----LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180 (264)
T ss_pred HHHHHH----HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHH
Confidence 221110 0001112222334556677767652 2234567777644 467999999999987 553
Q ss_pred ---HHHHhhhhcCceeEEee
Q psy6983 193 ---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ---~~l~Ri~~R~r~~~~~~ 209 (210)
..+..+.++++.++++.
T Consensus 181 ~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 181 KCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEc
Confidence 23445556688888873
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=6.5e-14 Score=131.94 Aligned_cols=155 Identities=12% Similarity=-0.015 Sum_probs=95.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++|+....+++ +|+++.+|++++|+||||||||||+++|+|...+ ..|.+.+.+ .
T Consensus 313 l~~~~l~~~y~~~~il~~--isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p------~~G~i~~~~----------~ 374 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDS--IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP------VSGEIGLAK----------G 374 (638)
T ss_pred EEEEeeEEEeCCeeeecc--ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCCeEEECC----------C
Confidence 335666666655444444 5667799999999999999999999999998643 222222211 1
Q ss_pred cceeeeehhhH--hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hcc
Q psy6983 110 SRWSLTFQTMV--QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 110 ~~~~~vfQ~~~--l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~ 177 (210)
.++||++|+.. +.+..+...... ..........+.++|..+++. .......+|+++++ ++.
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLA-------RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHH-------HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 36899999742 222222221110 001112234567888888884 23456789998765 457
Q ss_pred CccEEEEecCCC-----CHHHHHHhhhhcCceeEEee
Q psy6983 178 KTMLEVHLDQPI-----TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~~ 209 (210)
.|+++|++||+. .-+.+.+-+..-+..+++|.
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vS 484 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVS 484 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 999999999987 33344444444455777663
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.9e-14 Score=133.40 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=92.2
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcc---hHH--HHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN---LLA--LMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~---~l~--~~~ 106 (210)
+.+++++++.....+++ |+++.+|++++|+||||||||||+|+|+|...+. .|.+.+++.. ++. ...
T Consensus 4 i~nls~~~g~~~~l~~v--s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd------~G~I~~~~~~~i~~~~q~~~~ 75 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNA--TATINPGQKVGLVGKNGCGKSTLLALLKNEISAD------GGSYTFPGNWQLAWVNQETPA 75 (638)
T ss_pred EEEEEEEeCCceeecCc--EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEecCCCEEEEEecCCCC
Confidence 35566666655444444 5556999999999999999999999999975421 1111111100 000 000
Q ss_pred hcccceeeeehhhHhhhHHHHHHcC---CCCcc---cccc----cchhhhHHHHHHHHHHcchh--h-HHhhhhHHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQ---PITPI---KMME----RSIHSARWELTQCQICSQAL--M-YENASRWSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~---~~~~~---~~~~----~s~~e~~~~~~~~L~~~gl~--~-~~~~~~~s~~~~ 173 (210)
.....+++++|....+..++..... ..... .... ....+...++.+++..+|+. . ......+|++++
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 0112345555544333222211000 00000 0000 01112334678889999985 2 334578899876
Q ss_pred h-------hccCccEEEEecCCC--CHH---HHHHhhhhcCceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--TPI---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~R~r~~~~~~ 209 (210)
+ ++..||+++++||+. |++ .+.+-+.+-+..+++|.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivs 203 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS 203 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Confidence 5 467999999999987 332 33333344456777764
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.49 E-value=1.1e-13 Score=107.00 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=68.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++||+++|+|+||||||||+++|+|+.+. ..+.+.+++. ..++|++|
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~------~~G~i~~~~~----------~~i~~~~~------------ 70 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP------DEGIVTWGST----------VKIGYFEQ------------ 70 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC------CceEEEECCe----------EEEEEEcc------------
Confidence 5677799999999999999999999999998653 2232333221 46889988
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC-----CHHHHHHhhhhcCce
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI-----TPIKMMERSIHSARF 204 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~ 204 (210)
.|..+. +.....++++..|++++++||+. ..+...+.+++.++.
T Consensus 71 -----------lS~G~~--------------------~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~t 119 (144)
T cd03221 71 -----------LSGGEK--------------------MRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGT 119 (144)
T ss_pred -----------CCHHHH--------------------HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCE
Confidence 111111 11123344678999999999986 345555666666777
Q ss_pred eEEee
Q psy6983 205 VLVIE 209 (210)
Q Consensus 205 ~~~~~ 209 (210)
++++.
T Consensus 120 il~~t 124 (144)
T cd03221 120 VILVS 124 (144)
T ss_pred EEEEE
Confidence 77763
No 347
>KOG0055|consensus
Probab=99.47 E-value=5.2e-14 Score=137.15 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=100.0
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l 102 (210)
++.|.++.++|+... ....-.+|+++++|+.+||+|||||||||+..+|-++++ +.++|.++.++ + +
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l------n-l 1059 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL------N-L 1059 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC------C-H
Confidence 455677766666432 223334888889999999999999999999999999975 44445554421 1 2
Q ss_pred HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcc-------hh-hHHhh-----hhHH
Q psy6983 103 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQ-------AL-MYENA-----SRWS 169 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~g-------l~-~~~~~-----~~~s 169 (210)
. ..|+++|.|.|+|.||.. ++..++.++... -+..|. .++++..+ |. -|... .++|
T Consensus 1060 ~---~LR~~i~lVsQEP~LF~~-TIrENI~YG~~~---vs~~eI----i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1060 K---WLRKQIGLVSQEPVLFNG-TIRENIAYGSEE---VSEEEI----IEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred H---HHHHhcceeccCchhhcc-cHHHHHhccCCC---CCHHHH----HHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 3 233789999999998863 344444333111 122222 22222211 11 12221 2678
Q ss_pred HHHHh-------hccCccEEEEecCCC----C----HHHHHHhhhhcCceeEEe
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI----T----PIKMMERSIHSARFVLVI 208 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~----~----pe~~l~Ri~~R~r~~~~~ 208 (210)
|++++ ++..|.+++++|+|. + -+.+++|.. .||+.+||
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvI 1181 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVI 1181 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEE
Confidence 87654 468999999999986 2 345556654 45888876
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.45 E-value=7.9e-14 Score=140.78 Aligned_cols=157 Identities=14% Similarity=-0.069 Sum_probs=98.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+.+++||+++|+||||||||||+|+|+|...-. ..+..|.+.++|.+........++.++|++|+..+++.+++..
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~--~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF--HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC--CCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 77778999999999999999999999999975210 1234455556665542221223356899999976665444333
Q ss_pred cCCC------CcccccccchhhhH-HHHHHHHHHcchhhHHh-------hhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 130 DQPI------TPIKMMERSIHSAR-WELTQCQICSQALMYEN-------ASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 130 ~~~~------~~~~~~~~s~~e~~-~~~~~~L~~~gl~~~~~-------~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.... +.....+.+..+.. .+...+++.+|+.+..+ ...+|+++++ ++..|++++.+|++
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 2211 00000011222322 23456788888863221 3457887755 46799999999998
Q ss_pred C--------CHHHHHHhhhh-cCceeEEe
Q psy6983 189 I--------TPIKMMERSIH-SARFVLVI 208 (210)
Q Consensus 189 ~--------~pe~~l~Ri~~-R~r~~~~~ 208 (210)
. .-...++++.+ +|+.++++
T Consensus 238 sgLD~~~~~~i~~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLVA 266 (1394)
T ss_pred CCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7 34456667765 48888776
No 349
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.45 E-value=1.9e-13 Score=112.16 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=30.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+|+++++|++++|+||||||||||+++|+|...
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 567789999999999999999999999999854
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.45 E-value=1.4e-13 Score=130.91 Aligned_cols=174 Identities=13% Similarity=-0.015 Sum_probs=96.9
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC--C------cceeeccccccccccCcc
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG--D------ITAYAEPVNLWRDVKGHN 100 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~--~------i~~~~~~~~~~~~~~~~~ 100 (210)
.+.+.+++++|+.....++ +|+++.+|+.++|+|+||||||||+|+|+|.. . +.+.+....+. . ..
T Consensus 177 ~I~i~nls~~y~~~~ll~~--isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~-~---~t 250 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVD--ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD-D---TT 250 (718)
T ss_pred eEEEceEEEEeCCCEEEEC--CEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC-C---CC
Confidence 4567788888876544444 56667999999999999999999999999852 1 11111111110 0 01
Q ss_pred hHHH--------HHhcccceeeeehhhHhhhHHHHHHcCCCC------cc-------cccc----cchhhhHHHHHHHHH
Q psy6983 101 LLAL--------MYENASRWSLTFQTMVQKTMLEVHLDQPIT------PI-------KMME----RSIHSARWELTQCQI 155 (210)
Q Consensus 101 ~l~~--------~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~------~~-------~~~~----~s~~e~~~~~~~~L~ 155 (210)
.+.. ....+..+++++|++.+... ......... .. ...+ ....+...++.++|.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 1000 00012335677776543211 000000000 00 0000 001123345667788
Q ss_pred Hcchh---hHHhhhhHHHHHHh-------hccCccEEEEecCCC-----CHHHHHHhhhhcCceeEEee
Q psy6983 156 CSQAL---MYENASRWSLTFQT-------MVQKTMLEVHLDQPI-----TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 156 ~~gl~---~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~~ 209 (210)
.+|+. ....+.++|+++++ ++..||+++++||+. .-+.+.+-+.+-+..++||+
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivs 398 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVS 398 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 88875 23345688888755 467999999999987 33445555556678888875
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=122.41 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=95.7
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
..+++..+....+..-.+||++.+|+.++|+||||||||||.|+|.|.+. +.++|.++..|.. ..
T Consensus 338 e~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~----------e~ 407 (580)
T COG4618 338 ERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR----------EQ 407 (580)
T ss_pred eeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH----------HH
Confidence 34443333333333344788889999999999999999999999999753 5555555554432 12
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcch---h-----hHHhh-----hhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQA---L-----MYENA-----SRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl---~-----~~~~~-----~~~s~~~~~ 174 (210)
.-+++||.+|+--||+. ++-.++ .++ +.. .+++++++ +-...|. . -|..+ ..+|++.++
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNI----aRf-~~~-~d~~kIie-AA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENI----ARF-GEE-ADPEKVIE-AARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hccccCcCcccceecCC-cHHHHH----Hhc-ccc-CCHHHHHH-HHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 23789999999888764 222222 111 110 11111111 1111111 1 12111 145666544
Q ss_pred -------hccCccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
+...|-++|.+||-. -....+..+++||..++||-
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 568999999888865 23467788999999999874
No 352
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.43 E-value=7.3e-13 Score=113.34 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=85.4
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.++++. ....+++ +|+++++|++++|+|+||||||||+++|+|..++. .|.+.++
T Consensus 40 l~i~nls~~--~~~vL~~--vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~------~G~I~i~------------ 97 (282)
T cd03291 40 LFFSNLCLV--GAPVLKN--INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS------EGKIKHS------------ 97 (282)
T ss_pred EEEEEEEEe--cccceee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEEC------------
Confidence 345555543 2223333 66777999999999999999999999999986432 2222222
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHHHHHh--
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSLTFQT-- 174 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~~~~~-- 174 (210)
..++|++|++.+++. +...+..... .. . + ....+.++..++.++ ....++|+++++
T Consensus 98 g~i~yv~q~~~l~~~-tv~enl~~~~-~~---~--~--~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 98 GRISFSSQFSWIMPG-TIKENIIFGV-SY---D--E--YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CEEEEEeCccccccc-CHHHHhhccc-cc---C--H--HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 248999999866542 3333321110 00 0 0 112223333333210 012367776644
Q ss_pred -----hccCccEEEEecCCC--CHHH---HHHhhh---hcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPIK---MMERSI---HSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe~---~l~Ri~---~R~r~~~~~~ 209 (210)
++..|+++|++||+. |++. +++.+. .+++.++++.
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 467999999999987 4432 333321 3477777763
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.42 E-value=2e-13 Score=129.95 Aligned_cols=154 Identities=11% Similarity=-0.042 Sum_probs=93.6
Q ss_pred cCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 30 VPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+.+.+++++|+.. ...++ +|+++.+|++++|+||||||||||+++|+|+..+ ..|.+.+++
T Consensus 509 L~~~~ls~~y~~~~~il~~--vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p------~~G~I~~~~---------- 570 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKN--LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP------SSGTVFRSA---------- 570 (718)
T ss_pred EEEEeeEEEeCCCCeeEec--cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC------CCceEEECC----------
Confidence 3356666666432 23333 5677799999999999999999999999998643 222222111
Q ss_pred ccceeeeehhhHh-hhHH-HHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hc
Q psy6983 109 ASRWSLTFQTMVQ-KTML-EVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 109 ~~~~~~vfQ~~~l-~~~~-~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~ 176 (210)
..+++|++|++.. ++.. +..... .... .. .....+.++|..+|+. + ...+.++|+++++ ++
T Consensus 571 ~~~igyv~Q~~~~~l~~~~~~~~~~----~~~~--~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 571 KVRMAVFSQHHVDGLDLSSNPLLYM----MRCF--PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred ceeEEEEeccccccCCcchhHHHHH----HHhc--CC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh
Confidence 1468999998521 1110 101000 0000 00 1124567889999886 2 3345688998765 45
Q ss_pred cCccEEEEecCCC--C---HHHHHHhhhhcCceeEEe
Q psy6983 177 QKTMLEVHLDQPI--T---PIKMMERSIHSARFVLVI 208 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~---pe~~l~Ri~~R~r~~~~~ 208 (210)
..|+++|++||+. | .+.+++.+..-+..++++
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIiv 680 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMV 680 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 7999999999987 3 344555555434466665
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.42 E-value=7.2e-13 Score=134.80 Aligned_cols=155 Identities=8% Similarity=-0.043 Sum_probs=99.3
Q ss_pred ccCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh
Q psy6983 29 SVPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+.+.+++++++.. .....-++|+++++|+.++|+||||||||||+++|.|+++..- |... .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~-G~i~----------------~ 676 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE-TSSV----------------V 676 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC-CCEE----------------E
Confidence 45677777777642 1222334677789999999999999999999999999876421 1110 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hHHhh------------hhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MYENA------------SRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~~------------~~~s~~~~~ 174 (210)
.+..++||+|++.+++. ++..++..+ .+ . +.++..++++..++. +.... ..+||++++
T Consensus 677 ~~~~Iayv~Q~p~Lf~g-TIreNI~fg------~~-~-~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 747 (1495)
T PLN03232 677 IRGSVAYVPQVSWIFNA-TVRENILFG------SD-F-ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ 747 (1495)
T ss_pred ecCcEEEEcCccccccc-cHHHHhhcC------Cc-c-CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHH
Confidence 22679999999988753 333333211 11 1 223456666666664 22221 147888755
Q ss_pred -------hccCccEEEEecCCC--CHHH---HHHhhh---hcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPIK---MMERSI---HSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe~---~l~Ri~---~R~r~~~~~~ 209 (210)
++..||+++++|++. |+++ .++++. .++|++++|-
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT 797 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT 797 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE
Confidence 467999999999987 5443 334432 2678888873
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.42 E-value=3.3e-13 Score=124.11 Aligned_cols=158 Identities=12% Similarity=0.001 Sum_probs=93.0
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (210)
+++++.++++.....+++ +++.+|+.+||||+||||||||+|+|+|.... ..+.+.. ...-+
T Consensus 6 ~~~ls~~~g~~~l~~~~~--l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~------~~G~i~~----------~~~~~ 67 (530)
T COG0488 6 LENLSLAYGDRPLLENVS--LTLNPGERIGLVGRNGAGKSTLLKILAGELEP------DSGEVTR----------PKGLR 67 (530)
T ss_pred EeeeEEeeCCceeecCCc--ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC------CCCeEee----------cCCce
Confidence 455666666555555554 55599999999999999999999999998532 2221111 11136
Q ss_pred eeeeehhhHhhhH---HHHHHcCCCCccccc--------------------------ccchhhhHHHHHHHHHHcchhh-
Q psy6983 112 WSLTFQTMVQKTM---LEVHLDQPITPIKMM--------------------------ERSIHSARWELTQCQICSQALM- 161 (210)
Q Consensus 112 ~~~vfQ~~~l~~~---~~~~~~~~~~~~~~~--------------------------~~s~~e~~~~~~~~L~~~gl~~- 161 (210)
++|+.|++.+.+. ++.+.........+. +....+.+.++..+|..+|+..
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 8999998765532 222222110000000 0000122345666777777763
Q ss_pred HHhhhhHHHHHH-------hhccCccEEEEecCCC----CHHHHHHh-h-hhcCceeEEe
Q psy6983 162 YENASRWSLTFQ-------TMVQKTMLEVHLDQPI----TPIKMMER-S-IHSARFVLVI 208 (210)
Q Consensus 162 ~~~~~~~s~~~~-------~~~~~Pdl~I~Ld~~~----~pe~~l~R-i-~~R~r~~~~~ 208 (210)
.....++|++++ .++..||+++.+|||. +...-++. + ..+| .++||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiV 206 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVV 206 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEE
Confidence 455678888764 3578999999999887 33333443 3 2334 67766
No 356
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=6.7e-13 Score=116.36 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=105.5
Q ss_pred ccccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcch
Q psy6983 27 LLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNL 101 (210)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~ 101 (210)
..++.+.++.+.|.++. -..-.+|+++++||++.|+|.|||||||+++.|.|+. .|.++|+|+++. -
T Consensus 320 ~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e-------~ 391 (546)
T COG4615 320 WKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE-------Q 391 (546)
T ss_pred ccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC-------C
Confidence 34667788888887763 2223367778999999999999999999999999985 377778887642 2
Q ss_pred HHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh------hH-HhhhhHHHHH--
Q psy6983 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL------MY-ENASRWSLTF-- 172 (210)
Q Consensus 102 l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~------~~-~~~~~~s~~~-- 172 (210)
+++++ .-++-||-|+.+|+.+-..... ...+.++..|++..+. +- -..-++|.+.
T Consensus 392 ledYR---~LfSavFsDyhLF~~ll~~e~~-------------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkK 455 (546)
T COG4615 392 LEDYR---KLFSAVFSDYHLFDQLLGPEGK-------------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKK 455 (546)
T ss_pred HHHHH---HHHHHHhhhHhhhHhhhCCccC-------------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHH
Confidence 34333 4467889999888754322111 1112344445444443 10 0112344444
Q ss_pred -----HhhccCccEEEEecCCC--CH-------HHHHHhhhhcCceeEEee
Q psy6983 173 -----QTMVQKTMLEVHLDQPI--TP-------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 173 -----~~~~~~Pdl~I~Ld~~~--~p-------e~~l~Ri~~R~r~~~~~~ 209 (210)
.+++..=|+++++|=.. || .+.+-++++.|+++|.|-
T Consensus 456 RlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 456 RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred HHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 34567888999998766 44 467789999999999984
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.40 E-value=3.1e-13 Score=127.29 Aligned_cols=169 Identities=9% Similarity=-0.052 Sum_probs=89.5
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcc---hHHHHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN---LLALMYEN 108 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~---~l~~~~~~ 108 (210)
+.+++++++.....++ +|+++.+|++++|+||||||||||+++|+|...+. .|+ +.+.+.. .+... ..
T Consensus 6 i~~ls~~~~~~~il~~--is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~-----I~~~~~~~~~~l~q~-~~ 76 (635)
T PRK11147 6 IHGAWLSFSDAPLLDN--AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGR-----IIYEQDLIVARLQQD-PP 76 (635)
T ss_pred EeeEEEEeCCceeEeC--cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeE-----EEeCCCCEEEEeccC-CC
Confidence 4556666655444444 45666999999999999999999999999985421 111 1111100 00000 00
Q ss_pred ccceeeeehhhH-----hh---hHHHHHHcCC--CC---cc----cc---cc-cchhhhHHHHHHHHHHcchhhHHhhhh
Q psy6983 109 ASRWSLTFQTMV-----QK---TMLEVHLDQP--IT---PI----KM---ME-RSIHSARWELTQCQICSQALMYENASR 167 (210)
Q Consensus 109 ~~~~~~vfQ~~~-----l~---~~~~~~~~~~--~~---~~----~~---~~-~s~~e~~~~~~~~L~~~gl~~~~~~~~ 167 (210)
....++++|... +. ..+..+.... .. .. .. +. ....+...++.+++..+|+.......+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 156 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS 156 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhh
Confidence 122355555421 11 1111110000 00 00 00 00 011123346778888888864445677
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHH---HHHHhhhhcCceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPI---KMMERSIHSARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~~R~r~~~~~~ 209 (210)
+|+++++ ++..||++|++||+. |++ .+.+-+..-+..+++|.
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivs 210 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFIS 210 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEe
Confidence 8888755 467999999999987 433 22334433345666653
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=4.8e-13 Score=112.26 Aligned_cols=166 Identities=14% Similarity=-0.038 Sum_probs=84.4
Q ss_pred cccccccccccccccccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccc
Q psy6983 14 GALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLW 93 (210)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~ 93 (210)
-|+.|.||--++...-..--+..+.....+...-.++||++++|++++++|+|||||||++|+|.|..-+. .|.
T Consensus 7 ~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~------~G~ 80 (325)
T COG4586 7 ENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT------SGK 80 (325)
T ss_pred cccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC------CCe
Confidence 46777887655532111111111112221112223467778999999999999999999999999985432 222
Q ss_pred ccccCcchHHHHHhcccceeeeehh-hHh---hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hHHh-hhh
Q psy6983 94 RDVKGHNLLALMYENASRWSLTFQT-MVQ---KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MYEN-ASR 167 (210)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~vfQ~-~~l---~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~-~~~ 167 (210)
+.++|.........--+++++|+=. ..+ +|..+.+.-. ..+++.+..+.+++...+.+..++. .... ...
T Consensus 81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~----~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVL----KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHH----HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 2233322111111111445555322 111 2211111110 1123333334444555555555555 2222 345
Q ss_pred HHHHH-------HhhccCccEEEEecCCC
Q psy6983 168 WSLTF-------QTMVQKTMLEVHLDQPI 189 (210)
Q Consensus 168 ~s~~~-------~~~~~~Pdl~I~Ld~~~ 189 (210)
+|.+. .+++..|++++.+|+|+
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 66554 34678999988888887
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.5e-12 Score=132.97 Aligned_cols=155 Identities=8% Similarity=-0.065 Sum_probs=98.7
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+.+.+++++++... ....-.+|+++++|+.++|+||||||||||+++|.|+++..-. |.+.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G-----G~I~------------ 676 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD-----ASVV------------ 676 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCC-----ceEE------------
Confidence 466777777776421 1223346777899999999999999999999999998754210 2111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hHHhh------------hhHHHHHHh
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MYENA------------SRWSLTFQT 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~~------------~~~s~~~~~ 174 (210)
.+.+++||+|++.+++. ++..++.. ..+ . +.++..++++.+++. +.... ..+||++++
T Consensus 677 l~~~Iayv~Q~p~Lfng-TIreNI~f------g~~-~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ 747 (1622)
T PLN03130 677 IRGTVAYVPQVSWIFNA-TVRDNILF------GSP-F-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ 747 (1622)
T ss_pred EcCeEEEEcCccccCCC-CHHHHHhC------CCc-c-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH
Confidence 12679999999988752 33333321 111 1 224466666666665 22211 147887755
Q ss_pred -------hccCccEEEEecCCC--CHHH---HHHhhh---hcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPIK---MMERSI---HSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe~---~l~Ri~---~R~r~~~~~~ 209 (210)
++..||+++++|++. |+++ .++++. .++|++++|-
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT 797 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE
Confidence 467999999999987 5543 233332 2688888873
No 360
>PHA03132 thymidine kinase; Provisional
Probab=99.37 E-value=2.9e-12 Score=118.19 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC--CcceeeccccccccccCcchHHHHHhcccce----------eeeehhhHh--
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG--DITAYAEPVNLWRDVKGHNLLALMYENASRW----------SLTFQTMVQ-- 121 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~--~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~vfQ~~~l-- 121 (210)
++.+|+|.|+.||||||+++.|+..+ .+.+..||...|..+. .+.+...++...+. .+..|..+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy-~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~P 334 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVY-SNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATP 334 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhcc-ccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhH
Confidence 58999999999999999999999875 5667788988776654 35555555443221 112232221
Q ss_pred ----hhHHHHH---HcC-----CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhh-ccCccEEEEecCC
Q psy6983 122 ----KTMLEVH---LDQ-----PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTM-VQKTMLEVHLDQP 188 (210)
Q Consensus 122 ----~~~~~~~---~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~-~~~Pdl~I~Ld~~ 188 (210)
..+...+ ... ......+.||...++...|.......|.+.+..+.+| +..+ ...||++||||+
T Consensus 335 fl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~l---L~~~~~~~PDLiIyLdv- 410 (580)
T PHA03132 335 FRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQL---LSTFRAHEGDVIVLLKL- 410 (580)
T ss_pred HHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHH---HHHhcccCCCEEEEEeC-
Confidence 1222221 111 1223467889888886667666665565433332232 2222 247999999999
Q ss_pred CCHHHHHHhhhhcCce
Q psy6983 189 ITPIKMMERSIHSARF 204 (210)
Q Consensus 189 ~~pe~~l~Ri~~R~r~ 204 (210)
+|+++++||.+|||.
T Consensus 411 -~pe~alkRIkkRgR~ 425 (580)
T PHA03132 411 -NSEENLRRVKKRGRK 425 (580)
T ss_pred -CHHHHHHHHHhcCch
Confidence 999999999999995
No 361
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.37 E-value=1.9e-12 Score=100.48 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=75.0
Q ss_pred ehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhccC-ccEEEEecCCCCH
Q psy6983 116 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMVQK-TMLEVHLDQPITP 191 (210)
Q Consensus 116 fQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~~~-Pdl~I~Ld~~~~p 191 (210)
||.+++..++.++.........+++||..++..+|++++...|.+ ++..|.+|+..+...++. ||++|||++ ||
T Consensus 1 ~Q~~~l~~R~~~~~~~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~--~~ 78 (146)
T PF01712_consen 1 FQLYFLLSRFEQYKELNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLDA--SP 78 (146)
T ss_dssp HHHHHHHHHHHHHHHSTSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE----H
T ss_pred CcHHHHHHHHHHHHHHhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEeC--CH
Confidence 688899999998888555567889999999889999999999987 899999999988888888 999999999 99
Q ss_pred HHHHHhhhhcCcee
Q psy6983 192 IKMMERSIHSARFV 205 (210)
Q Consensus 192 e~~l~Ri~~R~r~~ 205 (210)
++|++||.+|||+.
T Consensus 79 e~~~~RI~kRgR~~ 92 (146)
T PF01712_consen 79 ETCLERIKKRGREE 92 (146)
T ss_dssp HHHHHHHHHCTTGG
T ss_pred HHHHHHHHHhCCch
Confidence 99999999999973
No 362
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.37 E-value=8.4e-13 Score=107.29 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=76.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcc----eeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDIT----AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTML 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~ 125 (210)
+++++.+| +++|+||||||||||+++|+++.+.. +.+.. .+...+.+.+... ....++++++||++..+
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~v~~vfq~~~~~--- 88 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEK-MSDVIFAGSETRK--PANFAEVTLTFDNSDGR--- 88 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccC-HHHHhccCCCCCC--CCceEEEEEEEEcCCCc---
Confidence 44556888 99999999999999999999874311 11111 1111122222110 11236789999998655
Q ss_pred HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhh-------c----cCccEEEEecCCC--CHH
Q psy6983 126 EVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTM-------V----QKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~-------~----~~Pdl~I~Ld~~~--~pe 192 (210)
.. . . ...++.++++..+. ....+.++|++++++ + ..|++++++||+. +|+
T Consensus 89 ----~~----~--~------~~~~~~~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 89 ----YS----I--I------SQGDVSEIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred ----ee----E--E------ehhhHHHHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 00 0 0 01234445544221 233456677776542 1 3568999999886 433
Q ss_pred ------HHHHhhhhcCceeEEee
Q psy6983 193 ------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.+ +..+++++
T Consensus 152 ~~~~l~~~l~~~~~-~~tiIiit 173 (197)
T cd03278 152 NVERFARLLKEFSK-ETQFIVIT 173 (197)
T ss_pred HHHHHHHHHHHhcc-CCEEEEEE
Confidence 34445543 56777764
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=2.9e-12 Score=99.95 Aligned_cols=33 Identities=30% Similarity=0.212 Sum_probs=29.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++++.+|++++|+|+||||||||+++|+|...
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566679999999999999999999999999854
No 364
>PLN03140 ABC transporter G family member; Provisional
Probab=99.36 E-value=5.7e-13 Score=134.82 Aligned_cols=154 Identities=16% Similarity=-0.007 Sum_probs=96.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+.+++|++++|+||||||||||+++|+|..+.. ..+.|.+.++|.+.... ..++.++|++|+..+++.+++..
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~---~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGEITYNGYRLNEF--VPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---CcceeEEEECCEechhh--cccceeEEecccccCCCcCcHHH
Confidence 67788999999999999999999999999986432 11345555566544221 11367899999976655443322
Q ss_pred cCCC-----Cccccc----ccchhh------------------------hHHHHHHHHHHcchhhH-------HhhhhHH
Q psy6983 130 DQPI-----TPIKMM----ERSIHS------------------------ARWELTQCQICSQALMY-------ENASRWS 169 (210)
Q Consensus 130 ~~~~-----~~~~~~----~~s~~e------------------------~~~~~~~~L~~~gl~~~-------~~~~~~s 169 (210)
.... ...... +.+..+ ...++..+++.+|+... .....+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 2210 000000 000010 01134567888888621 2235688
Q ss_pred HHHHh-------hccCccEEEEecCCC--------CHHHHHHhhhh-cCceeEEe
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--------TPIKMMERSIH-SARFVLVI 208 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--------~pe~~l~Ri~~-R~r~~~~~ 208 (210)
+++++ ++..|++++++|++. .-..+++++.+ .|++++++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 88765 457999999999987 44456667755 58888775
No 365
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.35 E-value=6.7e-13 Score=108.13 Aligned_cols=138 Identities=13% Similarity=0.003 Sum_probs=88.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhH--hh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--QK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l~ 122 (210)
+|+++.+|+++.|+|.||||||||++.|+|... +.+.+.+++.+.. ++....++-|||+|. ..
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~----------~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV----------AKRANLLARVFQDPLAGTA 94 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH----------HHHhhHHHHHhcchhhCCc
Confidence 677789999999999999999999999999743 5566666653221 122244688999984 45
Q ss_pred hHHHHHHcCCCC-----cccccccchhhhHHHHHHHHHHcchh---hHHh-hhhHHHHHHhh-------ccCccEEEEec
Q psy6983 123 TMLEVHLDQPIT-----PIKMMERSIHSARWELTQCQICSQAL---MYEN-ASRWSLTFQTM-------VQKTMLEVHLD 186 (210)
Q Consensus 123 ~~~~~~~~~~~~-----~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~-~~~~s~~~~~~-------~~~Pdl~I~Ld 186 (210)
+.+++..+.... ...+...-....+..|.+.+...++- ...+ ..-+|++.++. +..|++++.+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 555544443111 01111111233445677777777765 2222 33468877653 46999999998
Q ss_pred CCC--CHHHHHHh
Q psy6983 187 QPI--TPIKMMER 197 (210)
Q Consensus 187 ~~~--~pe~~l~R 197 (210)
.|. ||.....-
T Consensus 175 HTAALDPkta~~v 187 (263)
T COG1101 175 HTAALDPKTAEFV 187 (263)
T ss_pred hhhcCCcchHHHH
Confidence 887 77665543
No 366
>KOG0065|consensus
Probab=99.34 E-value=1.2e-12 Score=128.05 Aligned_cols=152 Identities=16% Similarity=0.072 Sum_probs=98.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
++.-+++|.++||+|+|||||||||+.|||.... -.++|.+.++|.+.-++. -+|.+|||-|+....+.+++.+
T Consensus 810 V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~----G~I~Gdi~i~G~p~~q~t--F~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 810 VSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG----GYIEGDILISGFPKDQET--FARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred CceEecCCceeehhcCCCCchHHHHHHHhcCccc----ceEEeEEEECCeeCchhh--hccccceeecccccCcccchHH
Confidence 8889999999999999999999999999997321 113334444444432222 2277899999976555555443
Q ss_pred cCCCCc-cc-ccccchhhhHHHHHHHHHHcchhhHHhh--hh----HHHHHHhh-------ccCccEEEEecCCC-----
Q psy6983 130 DQPITP-IK-MMERSIHSARWELTQCQICSQALMYENA--SR----WSLTFQTM-------VQKTMLEVHLDQPI----- 189 (210)
Q Consensus 130 ~~~~~~-~~-~~~~s~~e~~~~~~~~L~~~gl~~~~~~--~~----~s~~~~~~-------~~~Pdl~I~Ld~~~----- 189 (210)
...... .+ ..+.+..+..+.++++++-++|.++++. .. +|...+.+ +-+|+++|+||.|+
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDs 963 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDS 963 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccH
Confidence 331110 11 1233444544667888888887644332 22 44444443 46999999999988
Q ss_pred ----CHHHHHHhhhhcCceeEE
Q psy6983 190 ----TPIKMMERSIHSARFVLV 207 (210)
Q Consensus 190 ----~pe~~l~Ri~~R~r~~~~ 207 (210)
.--..++.+...||.++.
T Consensus 964 qaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 964 QAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHHHHHHHHHhcCCeEEE
Confidence 445668888899998863
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.34 E-value=1.7e-12 Score=132.32 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=92.7
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
.+.+.+++++++.......-.+|+++++|++++|+||||||||||+++|+|+.+.. .|.+.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~------~G~i~~~----------- 698 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV------EGHVHMK----------- 698 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC------CcEEEEC-----------
Confidence 35566677666543222233466777999999999999999999999999986542 2222222
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-h------------HHhhhhHHHHHHh-
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-M------------YENASRWSLTFQT- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~------------~~~~~~~s~~~~~- 174 (210)
.+++|++|++.+++ .+...++..+. . .+ + +...++++..++. + -....++|+++++
T Consensus 699 -g~i~yv~Q~~~l~~-~Ti~eNI~~g~-~-~~----~--~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 699 -GSVAYVPQQAWIQN-DSLRENILFGK-A-LN----E--KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred -CEEEEEcCCccccC-CcHHHHhhcCC-c-cC----H--HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 25899999987653 23333332111 0 11 1 1122223222222 1 1123468888755
Q ss_pred ------hccCccEEEEecCCC--CH---HHHHHhhh-----hcCceeEEee
Q psy6983 175 ------MVQKTMLEVHLDQPI--TP---IKMMERSI-----HSARFVLVIE 209 (210)
Q Consensus 175 ------~~~~Pdl~I~Ld~~~--~p---e~~l~Ri~-----~R~r~~~~~~ 209 (210)
++..||+++++|++. |+ +..++++. .+++++++|.
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvT 819 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEe
Confidence 468999999999987 44 33445553 3678888763
No 368
>KOG3877|consensus
Probab=99.34 E-value=7.5e-12 Score=105.18 Aligned_cols=147 Identities=19% Similarity=0.173 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccc--------------cC---cchHHHHHhcccc-eeeee
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDV--------------KG---HNLLALMYENASR-WSLTF 116 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~--------------~~---~~~l~~~~~~~~~-~~~vf 116 (210)
++.++|++.|+.|||||+|+|-||..++.....+--.+.+.. .+ ..-+..++.++.. .++.+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 566799999999999999999999765432222111111111 11 0114566666543 46778
Q ss_pred hhhHhhhHHHHHHcC----C-CCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhccCccEEEEecCC
Q psy6983 117 QTMVQKTMLEVHLDQ----P-ITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMVQKTMLEVHLDQP 188 (210)
Q Consensus 117 Q~~~l~~~~~~~~~~----~-~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~ 188 (210)
|+.....++.+..+. . .+...+++|+..+| .+|+++|...|.+ -...|.++-...-.-+..|+|+||||+
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SD-FVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~- 226 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSD-FVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT- 226 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchh-HHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC-
Confidence 886655555444332 1 34567889999998 8999999999987 344455543222222368999999999
Q ss_pred CCHHHHHHhhhhcCce
Q psy6983 189 ITPIKMMERSIHSARF 204 (210)
Q Consensus 189 ~~pe~~l~Ri~~R~r~ 204 (210)
|...|++||.+||-+
T Consensus 227 -Pv~~v~~~Ik~rg~~ 241 (393)
T KOG3877|consen 227 -PVNKVLENIKRRGNT 241 (393)
T ss_pred -CcHHHHHHHHhcCCC
Confidence 669999999999964
No 369
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.8e-12 Score=110.34 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=90.5
Q ss_pred ccccccCCCCCCc-cccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccc
Q psy6983 34 FLCASQNHNSTGK-RMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASR 111 (210)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 111 (210)
+.|+++.+..... ...+|+++..|+.++|+||||+||||+++.|-+++++... .+..+|+++.. .....++.
T Consensus 265 F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG------~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 265 FINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG------SITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred EEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc------eEEEcchhHHHhHHHHHHHH
Confidence 3344444433332 2237888899999999999999999999999999774322 12222233211 11123467
Q ss_pred eeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-----hH-----HhhhhHHHHH-------Hh
Q psy6983 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-----MY-----ENASRWSLTF-------QT 174 (210)
Q Consensus 112 ~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-----~~-----~~~~~~s~~~-------~~ 174 (210)
||+|+|+..||.... ..++..+.... +.+|. ..+++..+.-+.. -| +.+-.+|++. +.
T Consensus 339 Ig~VPQDtvLFNDti-~yni~ygr~~a---t~eev-~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 339 IGIVPQDTVLFNDTI-AYNIKYGRPDA---TAEEV-GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred hCcCcccceehhhhH-HHHHhccCccc---cHHHH-HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 999999998875422 22221111111 11111 1122221111111 01 1111334443 44
Q ss_pred hccCccEEEEecCCC----CHHHHHH---hhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI----TPIKMME---RSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~----~pe~~l~---Ri~~R~r~~~~~~ 209 (210)
++..|.+++++|+|. ..|..++ |...+||+.+||-
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvia 455 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIA 455 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEe
Confidence 678999999999986 3344444 3455899998873
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4.3e-12 Score=100.23 Aligned_cols=138 Identities=13% Similarity=0.023 Sum_probs=86.0
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
.+|++++.||++++-|||||||||++|+|.+.+. +.+. -..+|.++-......-..-.++.+|||.|.....|
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~--H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviP 106 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVR--HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIP 106 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEE--eCcchhhhhccChHHHHHHHHhhhHHHHHHHHhcc
Confidence 3777889999999999999999999999988642 2221 11233333222211212223377999999876666
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHh-hhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYEN-ASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~-~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
+...+.-..+ +..-.+.+.+.++.++..+|.+.++. .|.- +..+|++.+++ +-...+++++|+|.
T Consensus 107 RV~aLdVvae-Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTa 181 (235)
T COG4778 107 RVSALDVVAE-PLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTA 181 (235)
T ss_pred CcchHHHHHh-HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcc
Confidence 5443333322 12223446677788899999999887 4544 34578877654 33444555666654
No 371
>PHA03138 thymidine kinase; Provisional
Probab=99.30 E-value=8.5e-12 Score=108.05 Aligned_cols=144 Identities=20% Similarity=0.301 Sum_probs=105.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC----CC-cceeeccccccccccCcchHHHHH-------------hcccceeeeehhhH
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS----GD-ITAYAEPVNLWRDVKGHNLLALMY-------------ENASRWSLTFQTMV 120 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~----~~-i~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~vfQ~~~ 120 (210)
.|.|.|+.|+||||+++.++.. .+ +.+..||+.-|.+++|.|.+...| ++.+.+.+-+|..+
T Consensus 14 riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm~yWr~v~~~d~l~~iY~~q~r~~~G~~S~~da~~~~a~~Q~~f 93 (340)
T PHA03138 14 RIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPLMYWRNLAGDDAICGIYGTQTRRKNGDISDEDAQRLTAHFQGLF 93 (340)
T ss_pred EEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCchHHHHHhccccHHHHHHHHhhhhhcccccccchhHHHHHHHHHh
Confidence 5889999999999999866432 22 668899999999999989999999 66666777788876
Q ss_pred hhhHHH-------HHHcCC--------CCccccc--ccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEE
Q psy6983 121 QKTMLE-------VHLDQP--------ITPIKMM--ERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEV 183 (210)
Q Consensus 121 l~~~~~-------~~~~~~--------~~~~~~~--~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I 183 (210)
..|..- .+.... ..+..++ ||+..++...|-.++...|.+.+..+..+...+...-+..|++|
T Consensus 94 ~tP~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L~~~~p~~~~g~nLVv 173 (340)
T PHA03138 94 CSPHAILHAKILALMDQNPNDLALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGFLFALPAEPEGTNLIV 173 (340)
T ss_pred hhhHHHHHHHHHHHhccccCccccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCCCcEEE
Confidence 333211 111111 1123334 99999999999999999999877676665443333345568999
Q ss_pred EecCCCCHHHHHHhhhhcCcee
Q psy6983 184 HLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 184 ~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
|+-. ++| +.+||.+|+|+.
T Consensus 174 ~~l~--~~E-~~~RL~~R~R~g 192 (340)
T PHA03138 174 CTVS--LPN-HLSRISKRARPG 192 (340)
T ss_pred EeCC--cHH-HHHHHHhcCCCc
Confidence 9988 778 999999999986
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-12 Score=103.06 Aligned_cols=125 Identities=14% Similarity=-0.050 Sum_probs=74.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+||++.+||.+.|.||||||||||+|+|+|+.. +.+.++++... .+.+ .+..-|+-..+.+-+.
T Consensus 21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~--------~~~~---~~~l~yLGH~~giK~e 89 (209)
T COG4133 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV--------RESY---HQALLYLGHQPGIKTE 89 (209)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc--------hhhH---HHHHHHhhccccccch
Confidence 778889999999999999999999999999864 33333433311 1111 1222333333333333
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
++..++...- ..+.+ + .....+.++++.+||. +.....++|.+++.+ +...++=|.+||.+
T Consensus 90 LTa~ENL~F~-~~~~~-~--~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 90 LTALENLHFW-QRFHG-S--GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hhHHHHHHHH-HHHhC-C--CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 4433332100 01111 1 1223577889999998 444566788887653 56778866666654
No 373
>KOG0059|consensus
Probab=99.28 E-value=4.3e-12 Score=123.46 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=99.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+++.+++||+.++.|+|||||||+++++.|...+ .+.|..+..+. ...+.++.+||++|...+++.
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~---------~~~~~~~~iGyCPQ~d~l~~~ 654 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVST---------DFQQVRKQLGYCPQFDALWEE 654 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccccc---------chhhhhhhcccCCchhhhhhh
Confidence 5666799999999999999999999999998543 22233322110 111133679999999988777
Q ss_pred HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhh--hhHHHHHH-------hhccCccEEEEecCCC--CHHH
Q psy6983 125 LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENA--SRWSLTFQ-------TMVQKTMLEVHLDQPI--TPIK 193 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~--~~~s~~~~-------~~~~~Pdl~I~Ld~~~--~pe~ 193 (210)
++..+.... ...+.+.+..+....+..+++.+|+.++.+- ..+|++.. +++..|.+++++||++ ||..
T Consensus 655 lT~rEhL~~-~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~a 733 (885)
T KOG0059|consen 655 LTGREHLEF-YARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA 733 (885)
T ss_pred ccHHHHHHH-HHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence 664443310 1233343445566678899999999854443 45666653 3568999988888887 6653
Q ss_pred ------HHHhhhhcCceeEE
Q psy6983 194 ------MMERSIHSARFVLV 207 (210)
Q Consensus 194 ------~l~Ri~~R~r~~~~ 207 (210)
.++|+++++|.+++
T Consensus 734 rr~lW~ii~~~~k~g~aiiL 753 (885)
T KOG0059|consen 734 RRHLWDIIARLRKNGKAIIL 753 (885)
T ss_pred HHHHHHHHHHHHhcCCEEEE
Confidence 56788888874443
No 374
>KOG0054|consensus
Probab=99.23 E-value=2e-11 Score=121.32 Aligned_cols=162 Identities=17% Similarity=0.024 Sum_probs=108.3
Q ss_pred cccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchH
Q psy6983 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l 102 (210)
..+.|++++++|.++.......+|+++++||-|||+|-.|||||||+.+|-++.. |.++|.++... . +
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i------g-L 1209 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI------G-L 1209 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc------c-H
Confidence 4577999999999987777777888889999999999999999999999999743 44444444320 0 4
Q ss_pred HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH----------hh---hhHH
Q psy6983 103 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE----------NA---SRWS 169 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~----------~~---~~~s 169 (210)
.+. |++++.++|+|.||+. .+....++... .+| +..-++|+++++-+.. .. .+||
T Consensus 1210 ~dL---RsrlsIIPQdPvLFsG--TvR~NLDPf~e------~sD-~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1210 HDL---RSRLSIIPQDPVLFSG--TVRFNLDPFDE------YSD-DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred HHH---HhcCeeeCCCCceecC--ccccccCcccc------cCH-HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 433 3789999999999873 23333222111 122 2344556665554111 00 1455
Q ss_pred HHHHh-------hccCccEEEEecCCC----CHHHHHHhhhh---cCceeEEe
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI----TPIKMMERSIH---SARFVLVI 208 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~----~pe~~l~Ri~~---R~r~~~~~ 208 (210)
-+.++ ++.+..++|.+|+|. ..+.++|+..+ .+++|+.|
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltI 1330 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTI 1330 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEE
Confidence 55544 567999999999997 55667775543 46666655
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=110.94 Aligned_cols=135 Identities=11% Similarity=-0.094 Sum_probs=85.3
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
.+.++++.|+.. ..-.-.+|+.+.+|+.|||+||||+|||||+|+|+|..... .|....+ ..-
T Consensus 323 ~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g---------------~~v 385 (530)
T COG0488 323 EFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVG---------------ETV 385 (530)
T ss_pred EEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeC---------------Cce
Confidence 356666666554 11122377778999999999999999999999999875432 1211111 114
Q ss_pred ceeeeehhhH-hhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccCc
Q psy6983 111 RWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQKT 179 (210)
Q Consensus 111 ~~~~vfQ~~~-l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~P 179 (210)
++||..|+.. +.+..+.+... .+.........+...|..+++. .......+||+.+. ++..|
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l-------~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEEL-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHH-------HhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC
Confidence 5899999873 23211222221 1111111134577888888887 34455678998765 35799
Q ss_pred cEEEEecCCC
Q psy6983 180 MLEVHLDQPI 189 (210)
Q Consensus 180 dl~I~Ld~~~ 189 (210)
+++|++|||.
T Consensus 459 NvLiLDEPTN 468 (530)
T COG0488 459 NLLLLDEPTN 468 (530)
T ss_pred CEEEEcCCCc
Confidence 9999999987
No 376
>PTZ00243 ABC transporter; Provisional
Probab=99.22 E-value=2.2e-11 Score=124.28 Aligned_cols=139 Identities=14% Similarity=-0.026 Sum_probs=81.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+|+++++|++++|+||||||||||+++|+|..+.. .|.+.+ .++++|++|++.+++ .+...
T Consensus 679 isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~------~G~i~~------------~~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS------EGRVWA------------ERSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC------CcEEEE------------CCeEEEEeCCCccCC-CcHHH
Confidence 67778999999999999999999999999986532 221111 156999999987653 23333
Q ss_pred cCCCCcccccccch-hhhH--HHHHHHHHHc--chh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHHH
Q psy6983 130 DQPITPIKMMERSI-HSAR--WELTQCQICS--QAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPIK 193 (210)
Q Consensus 130 ~~~~~~~~~~~~s~-~e~~--~~~~~~L~~~--gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~ 193 (210)
++..... .+... .+.. ....+.++.+ |+. .-....++|+++++ ++..||+++++||+. |+..
T Consensus 740 nI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 740 NILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 3211100 00000 0000 0111222222 332 11224568888755 467999999999987 5542
Q ss_pred ---HHHhh---hhcCceeEEee
Q psy6983 194 ---MMERS---IHSARFVLVIE 209 (210)
Q Consensus 194 ---~l~Ri---~~R~r~~~~~~ 209 (210)
.++.+ ..+|++++++-
T Consensus 818 ~~~i~~~~~~~~~~~~TvIlvT 839 (1560)
T PTZ00243 818 GERVVEECFLGALAGKTRVLAT 839 (1560)
T ss_pred HHHHHHHHHHHhhCCCEEEEEe
Confidence 22322 23578888763
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=2.5e-11 Score=123.61 Aligned_cols=134 Identities=15% Similarity=0.053 Sum_probs=82.0
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|+++++|++++|+||||||||||+++|+|+... ..|.+.++ .+++|++|++.+++. +..
T Consensus 444 ~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~------~~G~i~~~------------g~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP------SEGKIKHS------------GRISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC------CCceEEEC------------CEEEEEeCCCccCCc-cHH
Confidence 36777899999999999999999999999998653 22322222 258999999987653 444
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchh-hH------------HhhhhHHHHHHh-------hccCccEEEEecCC
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQAL-MY------------ENASRWSLTFQT-------MVQKTMLEVHLDQP 188 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~------------~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~ 188 (210)
.++..+. . .+. ....++++..++. +. .....+|+++++ ++..||+++++|++
T Consensus 505 eNI~~g~-~-~~~------~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 505 DNIIFGL-S-YDE------YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHHhcc-c-cch------HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3332111 0 110 1122222222222 11 113467888755 46799999999998
Q ss_pred C--CHHH---HHHhh---hhcCceeEEee
Q psy6983 189 I--TPIK---MMERS---IHSARFVLVIE 209 (210)
Q Consensus 189 ~--~pe~---~l~Ri---~~R~r~~~~~~ 209 (210)
. |++. .++++ ..++++++++.
T Consensus 577 saLD~~~~~~i~~~~l~~~~~~~tvilvt 605 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLMSNKTRILVT 605 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7 4432 22221 23578888763
No 378
>PRK13975 thymidylate kinase; Provisional
Probab=99.21 E-value=4.2e-11 Score=96.38 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH---HHcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV---HLDQPI 133 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~---~~~~~~ 133 (210)
|.+|+|+|+.||||||+++.|+..++.....++..... | ..+.........-....+..+...+... +.....
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~---g-~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKI---G-KLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChH---H-HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999998765333233322100 1 1111111100000111111122222222 111111
Q ss_pred CcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCceeE
Q psy6983 134 TPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARFVL 206 (210)
Q Consensus 134 ~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~~~ 206 (210)
....+.+|...+. +....+.. ...+|...+...+..||++|||++ +++++++|+..|+|+.+
T Consensus 78 ~~~vi~DRy~~S~------~a~~~~~g---~~~~~~~~~~~~~~~pd~vi~L~~--~~e~~~~Rl~~r~~~~~ 139 (196)
T PRK13975 78 KRDVVCDRYVYSS------IAYQSVQG---IDEDFIYSINRYAKKPDLVFLLDV--DIEEALKRMETRDKEIF 139 (196)
T ss_pred CCEEEEECchhHH------HHHhcccC---CCHHHHHHHHhCCCCCCEEEEEcC--CHHHHHHHHhccCcccc
Confidence 1223445443332 11111110 011222222234568999999999 99999999999987644
No 379
>PHA03136 thymidine kinase; Provisional
Probab=99.20 E-value=5.8e-11 Score=104.24 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC----cceeecccccccccc-CcchHHHHHhccc-----cee-------ee--ehh
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD----ITAYAEPVNLWRDVK-GHNLLALMYENAS-----RWS-------LT--FQT 118 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~----i~~~~~~~~~~~~~~-~~~~l~~~~~~~~-----~~~-------~v--fQ~ 118 (210)
..|.|.|+.|+||||+++.|....+ +.+..||+.-|.+++ +.|.+...|...+ ++. ++ .|.
T Consensus 37 ~rvyieG~~gvGKTT~~~~l~~~~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~~Q~ 116 (378)
T PHA03136 37 VLLYLDGPFGTGKTTTAKLLMEMPDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAELQL 116 (378)
T ss_pred EEEEEECCCcCCHHHHHHHHHhccccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence 4689999999999999999987522 457899999999988 4677776664321 121 11 355
Q ss_pred hHhhhHHH------HHHcCC--------C--CcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEE
Q psy6983 119 MVQKTMLE------VHLDQP--------I--TPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLE 182 (210)
Q Consensus 119 ~~l~~~~~------~~~~~~--------~--~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~ 182 (210)
-+..|..- ...... . ....+++|+...+...+.......|.+.+..+..+..+ ...++.||++
T Consensus 117 ~fa~P~~~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~-~~~~p~pD~I 195 (378)
T PHA03136 117 QFAAPLRIFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISG-IPDEPHGGNI 195 (378)
T ss_pred HhccHHHHHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhh-CcCCCCCCEE
Confidence 43222111 111100 1 12356678777777777777787777755554443211 2245789999
Q ss_pred EEecCCCCHHHHHHhhhhcCcee
Q psy6983 183 VHLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 183 I~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
|||+. +++++++||.+|||+.
T Consensus 196 IyL~l--~~e~~~~RI~kRgR~~ 216 (378)
T PHA03136 196 VIMDL--DECEHAERIIARGRPG 216 (378)
T ss_pred EEEeC--CHHHHHHHHHHcCCCc
Confidence 99999 9999999999999974
No 380
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.19 E-value=1e-11 Score=102.84 Aligned_cols=59 Identities=20% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHcchhh---HHhhhhHHHHHHhh-------ccCc--cEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 151 TQCQICSQALM---YENASRWSLTFQTM-------VQKT--MLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 151 ~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~P--dl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
.+.++.+++.. ...+.++|+++++. +..| +++|++||+. |+ ...+.++.++|..++++.
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 46788888752 23456788887653 4466 6999999986 33 234556667788888875
No 381
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.19 E-value=5e-11 Score=100.92 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHHHHHcchhh---HHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--------CHHHHHHhhhhcCceeEE
Q psy6983 149 ELTQCQICSQALM---YENASRWSLTFQTM-------VQK---TMLEVHLDQPI--------TPIKMMERSIHSARFVLV 207 (210)
Q Consensus 149 ~~~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~ 207 (210)
.+.++|+.+|+.. -....++|++++++ +.. |+++|++||+. .....++++.++|..+++
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456777888752 23345688887653 333 79999999987 333556677778999999
Q ss_pred ee
Q psy6983 208 IE 209 (210)
Q Consensus 208 ~~ 209 (210)
++
T Consensus 228 it 229 (261)
T cd03271 228 IE 229 (261)
T ss_pred Ee
Confidence 87
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=106.85 Aligned_cols=150 Identities=11% Similarity=-0.005 Sum_probs=90.7
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
.+.+.++.+..+... .-.-.+++.+++|+-+-|.||||||||||+|+|+|+.++.- +.+.+ ..
T Consensus 392 ~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~------G~I~~----------P~ 454 (604)
T COG4178 392 GITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS------GRISM----------PA 454 (604)
T ss_pred eeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC------Cceec----------CC
Confidence 344555555555543 11222677789999999999999999999999999976421 11111 11
Q ss_pred ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh----hHHhhhhH----HHHHHh------
Q psy6983 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL----MYENASRW----SLTFQT------ 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~----~~~~~~~~----s~~~~~------ 174 (210)
..+.-|++|.|++-.. +......++... ....| +...+.|.++||. .....++| |.+.++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~----~~~~d-~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAA----PDFSD-AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCC----CCCCh-HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 1457899999875432 222222222111 11233 4577889999997 23333445 344443
Q ss_pred -hccCccEEEEecCCC----CHHHHHHhhhhc
Q psy6983 175 -MVQKTMLEVHLDQPI----TPIKMMERSIHS 201 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~----~pe~~l~Ri~~R 201 (210)
++.+|+.++.+|+|. +-|..+-++.++
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 468999999999986 344444444444
No 383
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.11 E-value=9.4e-11 Score=95.44 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=68.1
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQ 131 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~ 131 (210)
+++..|++++|+||||||||||+|+|++..-+...|.++. .-.++||...+++.++...+.
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~-------------------a~~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVC-------------------ASSFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEe-------------------cCccCcccceEEEeccchhcc
Confidence 3345679999999999999999999988422222233221 113667755566666554443
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC--CHH-------HHHHhhhhcC
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI--TPI-------KMMERSIHSA 202 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~--~pe-------~~l~Ri~~R~ 202 (210)
.... .....+ ..++.++++.+++ ..|++++.+|++. ++. ..++++.+++
T Consensus 81 ~~~~----s~~~~e-~~~~~~iL~~~~~-----------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~ 138 (199)
T cd03283 81 RDGI----SYFYAE-LRRLKEIVEKAKK-----------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN 138 (199)
T ss_pred cccc----ChHHHH-HHHHHHHHHhccC-----------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence 2211 001112 1334555554431 5899999999865 322 1345666677
Q ss_pred ceeEEee
Q psy6983 203 RFVLVIE 209 (210)
Q Consensus 203 r~~~~~~ 209 (210)
..++++.
T Consensus 139 ~tiiivT 145 (199)
T cd03283 139 TIGIIST 145 (199)
T ss_pred CEEEEEc
Confidence 7777763
No 384
>KOG0054|consensus
Probab=99.09 E-value=4.7e-10 Score=111.77 Aligned_cols=149 Identities=15% Similarity=-0.018 Sum_probs=99.3
Q ss_pred cCCCccccccCCCCC-CccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 30 VPFCFLCASQNHNST-GKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
+.+.+.+.+-+..+. ...-++|+++++|+.+||+|+.|||||+|+.+|.|..+.. .|...++
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~------sG~v~v~----------- 581 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL------SGSVAVN----------- 581 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc------cceEEEc-----------
Confidence 334444444333211 1333467888999999999999999999999999986542 2222222
Q ss_pred ccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hHHhhh------------hHHHHHH
Q psy6983 109 ASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MYENAS------------RWSLTFQ 173 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~~~------------~~s~~~~ 173 (210)
..++|++|.+.+++ ..+++..+. + -++++..+.++.+.|. |+.... .+||+++
T Consensus 582 -gsiaYv~Q~pWI~ngTvreNILFG~---------~--~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 582 -GSVAYVPQQPWIQNGTVRENILFGS---------P--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred -CeEEEeccccHhhCCcHHHhhhcCc---------c--ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 34899999998764 334444331 1 1334566677777665 333322 5788876
Q ss_pred hh-------ccCccEEEEecCCC---------CHHHHHHhhhhcCceeEEe
Q psy6983 174 TM-------VQKTMLEVHLDQPI---------TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 174 ~~-------~~~Pdl~I~Ld~~~---------~pe~~l~Ri~~R~r~~~~~ 208 (210)
++ .+..|+.+++||-. =.+.|+ +-..|+++++++
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci-~~~L~~KT~ILV 699 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI-RGLLRGKTVILV 699 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH-HhhhcCCEEEEE
Confidence 64 57999999999865 457888 888899999887
No 385
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.09 E-value=3.2e-10 Score=91.58 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=23.4
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
+.||++|||++ ||+++++|+.+|+.
T Consensus 126 ~~pd~~i~l~~--~~~~~~~Rl~~R~~ 150 (205)
T PRK00698 126 FRPDLTLYLDV--PPEVGLARIRARGE 150 (205)
T ss_pred CCCCEEEEEeC--CHHHHHHHHHhcCC
Confidence 67999999999 99999999999984
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.07 E-value=1.8e-10 Score=96.62 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCc-chHHH---HHhcccceeeeehhhH---------hhh
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGH-NLLAL---MYENASRWSLTFQTMV---------QKT 123 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~-~~l~~---~~~~~~~~~~vfQ~~~---------l~~ 123 (210)
+.+++|+||||||||||+++|++.+.....+.... .+. ++... ......+++++||++. +.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~-----~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRA-----SNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccc-----cCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 34899999999999999999998754221111110 000 11100 0012347899999852 222
Q ss_pred HHHHHHcCCCCc-ccc-cccchhhhHHHHHHHHHHcchh-h---------------------HHhhhhHHHHHHhh----
Q psy6983 124 MLEVHLDQPITP-IKM-MERSIHSARWELTQCQICSQAL-M---------------------YENASRWSLTFQTM---- 175 (210)
Q Consensus 124 ~~~~~~~~~~~~-~~~-~~~s~~e~~~~~~~~L~~~gl~-~---------------------~~~~~~~s~~~~~~---- 175 (210)
.+++..+..... ... .+ ........+.++|+.+|+. + .....++|+++++.
T Consensus 100 ~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 100 EITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred eEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 332222221111 111 11 1122335677888888874 1 12344677776542
Q ss_pred ---c----cCccEEEEecCCC--C---HHHHHHhhh--hcCceeEEee
Q psy6983 176 ---V----QKTMLEVHLDQPI--T---PIKMMERSI--HSARFVLVIE 209 (210)
Q Consensus 176 ---~----~~Pdl~I~Ld~~~--~---pe~~l~Ri~--~R~r~~~~~~ 209 (210)
+ ..|++++++|++. | .+.+++.+. .+|..+++|.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iS 226 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVS 226 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 2 4679999999986 2 333334333 2577777664
No 387
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.07 E-value=5.4e-10 Score=89.69 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcc--eeeccccccccccCcchHHHHHhcccceeeeehhhHhh-h--HHHHHHcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDIT--AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK-T--MLEVHLDQ 131 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~-~--~~~~~~~~ 131 (210)
|++++|+||||||||||+++|++..... +....+... ... .....+++++|++.-. . .+......
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRP-------ASA---GSENHIALSEQEFFTRAGQNLFALSWHA 71 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCc-------cch---hHHhheeEcHHHHHHHHHCCchhhHHHH
Confidence 6789999999999999999999986432 222222210 000 1113467778875311 0 00000000
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
....++.+. + +.+.+..-.-....--...........+.+-.+|||++ |++++.+|+..|+|.
T Consensus 72 ---~g~~yg~~~-~----~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~--s~e~l~~RL~~R~~~ 134 (186)
T PRK10078 72 ---NGLYYGVGI-E----IDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV--SPEILRQRLENRGRE 134 (186)
T ss_pred ---hCCccCCcH-H----HHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeC--CHHHHHHHHHHhCCC
Confidence 011122221 1 23333211100000000000111223456677899999 999999999999875
No 388
>KOG0060|consensus
Probab=99.07 E-value=6.1e-10 Score=101.65 Aligned_cols=172 Identities=13% Similarity=-0.028 Sum_probs=95.1
Q ss_pred ecCCcccccccccccccccccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecc
Q psy6983 10 LSGAGALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP 89 (210)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~ 89 (210)
++..-..-|..|++ . .+.|..+..+.+.+..+---++|+++.+|+.+-|.||||||||+|+|.|+|+++.. .|.-
T Consensus 418 l~~~~G~~~~~~~D-n---~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~-~G~l 492 (659)
T KOG0060|consen 418 LSLPPGSGKAEPAD-N---AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST-GGKL 492 (659)
T ss_pred cCCCCCCccccccc-c---eEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC-CCeE
Confidence 33333334555655 2 23344444444443222222388999999999999999999999999999996521 1111
Q ss_pred ccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccc-cccchhhhHHHHHHHHHHcchh--------
Q psy6983 90 VNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKM-MERSIHSARWELTQCQICSQAL-------- 160 (210)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~-~~~s~~e~~~~~~~~L~~~gl~-------- 160 (210)
...+ ...++.+-|++|.|++-.. +...+..++.... .++...++ +...+.|+.+++.
T Consensus 493 ~k~~------------~~~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d-~~i~r~Le~v~L~hl~~r~gg 558 (659)
T KOG0060|consen 493 TKPT------------DGGPKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASD-EDILRILENVQLGHLLEREGG 558 (659)
T ss_pred Eecc------------cCCCCceEEecCCCCcccc-chhheeeccCccccccccCCCH-HHHHHHHHHhhhhhHHHHhCC
Confidence 1100 0112457899999864322 2222332322211 12222222 4566666666664
Q ss_pred -h----HHhhhhHHHHHHh-------hccCccEEEEecCCC----CHHHHHHhhhh
Q psy6983 161 -M----YENASRWSLTFQT-------MVQKTMLEVHLDQPI----TPIKMMERSIH 200 (210)
Q Consensus 161 -~----~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~----~pe~~l~Ri~~ 200 (210)
+ +.=++.+|.+.++ +..+|.+.|.+|+|. +-|..+=|+-+
T Consensus 559 ld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r 614 (659)
T KOG0060|consen 559 LDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR 614 (659)
T ss_pred CCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH
Confidence 1 2222333555444 357999999999986 55666555443
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.03 E-value=8.7e-10 Score=90.39 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+|++++|+||||||||||+++|++.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheee
Confidence 35889999999999999999999853
No 390
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.02 E-value=5e-10 Score=89.52 Aligned_cols=27 Identities=26% Similarity=0.122 Sum_probs=24.5
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
...||++|||++ +++++++|+.+|++.
T Consensus 123 ~~~~~~~i~l~~--~~~~~~~R~~~R~~~ 149 (200)
T cd01672 123 GLKPDLTILLDI--DPEVGLARIEARGRD 149 (200)
T ss_pred CCCCCEEEEEeC--CHHHHHHHHHhcCCc
Confidence 458999999999 999999999999874
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.98 E-value=1.1e-09 Score=89.57 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=89.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC--cceeeccccccccccCcchHHHHHhcc-----cceeeeehhhH--
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD--ITAYAEPVNLWRDVKGHNLLALMYENA-----SRWSLTFQTMV-- 120 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~--i~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~vfQ~~~-- 120 (210)
+|+++..||+-+++|+||||||-.+|.+.|... ..+..... .|+..+++...-+.+ ++++|+||++.
T Consensus 26 v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~----Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sC 101 (330)
T COG4170 26 VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRM----RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred eeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhc----ccccchhhcCChHHhhhhhccchhhhhcCchhh
Confidence 566679999999999999999999999998643 22111111 111122232221222 45799999984
Q ss_pred hhhHHHHHHcCCC--Ccccccccc---hhhhHHHHHHHHHHcchhhHHhh-----hhHHHHH-------HhhccCccEEE
Q psy6983 121 QKTMLEVHLDQPI--TPIKMMERS---IHSARWELTQCQICSQALMYENA-----SRWSLTF-------QTMVQKTMLEV 183 (210)
Q Consensus 121 l~~~~~~~~~~~~--~~~~~~~~s---~~e~~~~~~~~L~~~gl~~~~~~-----~~~s~~~-------~~~~~~Pdl~I 183 (210)
|.|.-++..+... +...+.++. ..-.+.++-++|+++|+-++++. .++-.+. .+.+-+|.++|
T Consensus 102 LDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLI 181 (330)
T COG4170 102 LDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEe
Confidence 4554443333211 111111221 11233467889999999744432 2333322 23457999999
Q ss_pred EecCCC--CHH------HHHHhhhhcCceeEE
Q psy6983 184 HLDQPI--TPI------KMMERSIHSARFVLV 207 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~R~r~~~~ 207 (210)
-++++. +|. .++.|+.+.+-+.|+
T Consensus 182 ADEPTN~~e~~Tq~QifRLLs~mNQn~~TtIL 213 (330)
T COG4170 182 ADEPTNSMEPTTQAQIFRLLSRLNQNSNTTIL 213 (330)
T ss_pred ccCCCcccCccHHHHHHHHHHHhhccCCceEE
Confidence 999986 332 456777777666554
No 392
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.98 E-value=9.9e-10 Score=89.63 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++|++++|+|+||||||||++.|++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999999998754
No 393
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.98 E-value=2.1e-09 Score=85.46 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=83.8
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhcccceeeeehhh---
Q psy6983 47 RMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--- 119 (210)
Q Consensus 47 ~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--- 119 (210)
..++|..+..||++-++||||||||||+-.++|+. .+.+.|.++..|.. . +..++-+|..|+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~-------~---eLArhRAYLsQqq~p~ 84 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSA-------T---ELARHRAYLSQQQTPP 84 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhH-------h---HHHHHHHHHhhccCCc
Confidence 34588889999999999999999999999999984 35566666554321 1 1112336776664
Q ss_pred HhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh--------------ccCccEEE
Q psy6983 120 VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM--------------VQKTMLEV 183 (210)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~--------------~~~Pdl~I 183 (210)
+..|.+...... . +..+......++....++. ..+...++|++.=++ .+.-.+++
T Consensus 85 f~mpV~~YL~L~-q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLl 155 (248)
T COG4138 85 FAMPVWHYLTLH-Q--------PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLL 155 (248)
T ss_pred chhhhhhhhhhc-C--------chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEE
Confidence 234443322111 0 1111112233444444554 344556777764221 12335666
Q ss_pred EecCCC--------CHHHHHHhhhhcCceeEEe
Q psy6983 184 HLDQPI--------TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 184 ~Ld~~~--------~pe~~l~Ri~~R~r~~~~~ 208 (210)
.+|+-. -.+..++|+-+.|+.|++.
T Consensus 156 lDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 156 LDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 666654 3456778888889998874
No 394
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.96 E-value=1.8e-09 Score=86.23 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|++++|+|+|||||||+++.|++++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4889999999999999999999998653
No 395
>PRK07933 thymidylate kinase; Validated
Probab=98.95 E-value=1.1e-09 Score=90.19 Aligned_cols=27 Identities=26% Similarity=0.127 Sum_probs=24.4
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
.+.||++||||+ ||+++++|+.+|++.
T Consensus 130 ~~~PDl~i~Ldv--~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 130 LPVPDLQVLLDV--PVELAAERARRRAAQ 156 (213)
T ss_pred CCCCCEEEEecC--CHHHHHHHHHhhccc
Confidence 458999999999 999999999999863
No 396
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.95 E-value=8.6e-10 Score=81.08 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=32.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVN 91 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~ 91 (210)
+++.+++|++++|+||||||||||++++. .+.+.+.+.++.
T Consensus 8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-~G~i~~~g~di~ 48 (107)
T cd00820 8 VLVDVYGKVGVLITGDSGIGKTELALELI-KRKHRLVGDDNV 48 (107)
T ss_pred eEEEEcCCEEEEEEcCCCCCHHHHHHHhh-CCeEEEeeEeHH
Confidence 45666999999999999999999999998 445555555543
No 397
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.95 E-value=2.4e-09 Score=87.70 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccc--eeeeehhhH---hhhHH
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASR--WSLTFQTMV---QKTML 125 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~vfQ~~~---l~~~~ 125 (210)
.|.+|+|.|.-||||||.++.|...+ ++.+..+|-. .++-...++.-.+ ..+-..... ...+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~-------~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~ 74 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG-------TPIGEKIRELLLNGEEKLSPKAEALLFAADRA 74 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-------ChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998763 3445555543 2222222211111 011111111 12333
Q ss_pred HHHHcC-----CCCcccccccchhhhHHHHHHHHHH-cchh-hHHhhhhHHHHHHhhcc---CccEEEEecCCCCHHHHH
Q psy6983 126 EVHLDQ-----PITPIKMMERSIHSARWELTQCQIC-SQAL-MYENASRWSLTFQTMVQ---KTMLEVHLDQPITPIKMM 195 (210)
Q Consensus 126 ~~~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~-~gl~-~~~~~~~~s~~~~~~~~---~Pdl~I~Ld~~~~pe~~l 195 (210)
..+... ..+...+.||...+ .+.++ .+.. ++....++ ...++ .||+.+|||+ ||++++
T Consensus 75 ~h~~~~i~pal~~g~vVI~DRy~~S------s~AYQg~~~~~~~~~~~~l----~~~~~~~~~PD~ti~Ldv--~~e~al 142 (208)
T COG0125 75 QHLEEVIKPALKEGKVVICDRYVDS------SLAYQGGGRGLDLDWVLAL----NEFAPGGLKPDLTLYLDV--PPEVAL 142 (208)
T ss_pred HHHHHHHHHhhcCCCEEEECCcccH------HHHhhhhccCCCHHHHHHH----HHhccCCCCCCEEEEEeC--CHHHHH
Confidence 322221 11223444443333 33332 1221 22222222 23455 9999999999 999999
Q ss_pred HhhhhcCce
Q psy6983 196 ERSIHSARF 204 (210)
Q Consensus 196 ~Ri~~R~r~ 204 (210)
+|+.+|+..
T Consensus 143 ~R~~~r~~~ 151 (208)
T COG0125 143 ERIRKRGEL 151 (208)
T ss_pred HHHHhcCCc
Confidence 999999764
No 398
>PRK13973 thymidylate kinase; Provisional
Probab=98.94 E-value=3.3e-09 Score=87.09 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|.+|+|+|+.||||||+++.|+..+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999999764
No 399
>KOG0927|consensus
Probab=98.93 E-value=3e-09 Score=96.58 Aligned_cols=154 Identities=14% Similarity=0.008 Sum_probs=86.5
Q ss_pred ecCCccccccccccccccc----------ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 10 LSGAGALFKCFPSQLHILL----------SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+...|-..|.+++.-..+. -+-+.++.+.|.++. .--..++|-+..++.++++||||+|||||+|++.|
T Consensus 360 m~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~g 438 (614)
T KOG0927|consen 360 MEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG 438 (614)
T ss_pred HhhccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhh
Confidence 4555666666665432221 122455555555543 22233667778888999999999999999999999
Q ss_pred CCCcceeeccccccccccCcchHHHHHhcccceeeeehhhH--h---hhHHHHHHcCCCCcccccccchhhhHHHHHHHH
Q psy6983 80 SGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV--Q---KTMLEVHLDQPITPIKMMERSIHSARWELTQCQ 154 (210)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~--l---~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L 154 (210)
.+.. ..|.+....++ .+++.-|+.. + .+.++..... +.. ....+....++
T Consensus 439 dl~p------~~G~vs~~~H~----------~~~~y~Qh~~e~ldl~~s~le~~~~~-------~~~--~~~~e~~r~il 493 (614)
T KOG0927|consen 439 DLQP------TIGMVSRHSHN----------KLPRYNQHLAEQLDLDKSSLEFMMPK-------FPD--EKELEEMRSIL 493 (614)
T ss_pred cccc------ccccccccccc----------cchhhhhhhHhhcCcchhHHHHHHHh-------ccc--cchHHHHHHHH
Confidence 8643 22222211111 2222222221 0 1111111111 111 12234567788
Q ss_pred HHcchh---hHHhhhhHHHHHHhh-------ccCccEEEEecCCC
Q psy6983 155 ICSQAL---MYENASRWSLTFQTM-------VQKTMLEVHLDQPI 189 (210)
Q Consensus 155 ~~~gl~---~~~~~~~~s~~~~~~-------~~~Pdl~I~Ld~~~ 189 (210)
.+.|+. +-....++|.+++.+ +..|.+++++||+.
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 999987 333456788877653 57999998888875
No 400
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.89 E-value=9.2e-09 Score=81.67 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
|++++|+|||||||||+++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998864
No 401
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.86 E-value=2.3e-09 Score=85.34 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.9
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
....||++|||++ |++.+++|+..|++
T Consensus 103 ~~~~~~~vi~l~~--~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 103 RIGPPTLVLYFDC--SEDTMVKRLLKRAE 129 (188)
T ss_pred cCCCCCEEEEEEC--CHHHHHHHHHcccc
Confidence 3457999999999 99999999999875
No 402
>KOG0927|consensus
Probab=98.86 E-value=2.2e-09 Score=97.42 Aligned_cols=65 Identities=23% Similarity=0.146 Sum_probs=46.6
Q ss_pred ecCCcccccccccccccccccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 10 LSGAGALFKCFPSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-|-.||+..+..|.-..+-+++++ +......++. ++++.+|+..+|+|+|||||||+++++++..
T Consensus 61 ~~~tg~l~s~~~s~dvk~~sls~s-----~~g~~l~kd~--~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 61 RSVTGNLFSHPISRDVKIESLSLS-----FHGVELIKDV--TLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred hhcccccccCcccccceeeeeeec-----cCCceeeeee--eEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 455678877777755444444444 4444444444 5666999999999999999999999999864
No 403
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.84 E-value=7.6e-09 Score=83.13 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
|.+|+|+|+.||||||+++.|+..+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999764
No 404
>PRK08118 topology modulation protein; Reviewed
Probab=98.83 E-value=8.4e-09 Score=81.69 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.7
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.++.+|.+||||+ |.++|+.|+.+|..
T Consensus 75 ~l~~~d~vi~Ld~--p~~~~~~R~~~R~~ 101 (167)
T PRK08118 75 RLNAADTIIFLDI--PRTICLYRAFKRRV 101 (167)
T ss_pred HHHhCCEEEEEeC--CHHHHHHHHHHHHH
Confidence 4567999999999 88999999999954
No 405
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.82 E-value=4.8e-08 Score=77.46 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
|++++|+||||||||||++.|++...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 67999999999999999999999643
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.81 E-value=1.1e-08 Score=83.41 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~ 78 (210)
.+| +++|+||||||||||+++|.
T Consensus 21 ~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 21 FSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHH
Confidence 455 99999999999999999995
No 407
>KOG0066|consensus
Probab=98.79 E-value=1.7e-08 Score=90.10 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=84.7
Q ss_pred CCccccccCCCCCC-ccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccc
Q psy6983 32 FCFLCASQNHNSTG-KRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110 (210)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 110 (210)
+.++++.|+....+ +.+.+.+.+.. .|||+||||.|||||+++|.|.+++.- |+--. ..+-
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~-GE~RK---------------nhrL 650 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPND-GELRK---------------NHRL 650 (807)
T ss_pred cccccccCCCCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCc-chhhc---------------ccee
Confidence 34444445443332 34444444444 899999999999999999999875421 11100 1124
Q ss_pred ceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH---hhhhHHHHHHhh-------ccCcc
Q psy6983 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE---NASRWSLTFQTM-------VQKTM 180 (210)
Q Consensus 111 ~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~---~~~~~s~~~~~~-------~~~Pd 180 (210)
+||+.-|++.- .....+.+..++.+...-..+.+...|-.+||..++ ...++|++..++ +..||
T Consensus 651 ~iG~FdQh~~E------~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 651 RIGWFDQHANE------ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred eeechhhhhHH------hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 57887676531 111111111111111111223355677778887221 234677765443 57999
Q ss_pred EEEEecCCC-----CHHHHHHhhhhcCceeEEe
Q psy6983 181 LEVHLDQPI-----TPIKMMERSIHSARFVLVI 208 (210)
Q Consensus 181 l~I~Ld~~~-----~pe~~l~Ri~~R~r~~~~~ 208 (210)
++|++++|. +-+.+-+-|+.=+--|++|
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~V 757 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMV 757 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEE
Confidence 999999986 4455566666666556554
No 408
>KOG0062|consensus
Probab=98.79 E-value=4.5e-09 Score=94.94 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=33.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.|+.+..|+...-+... ++++..|...+|+|+||+|||||||+|+.
T Consensus 83 ~~~fdLa~G~k~LL~~a--~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKA--NLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeecchhhhcCC--ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34555555554434333 34558888999999999999999999997
No 409
>PRK13974 thymidylate kinase; Provisional
Probab=98.79 E-value=6.4e-09 Score=85.34 Aligned_cols=26 Identities=38% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|++|+|+|+.||||||+++.|++.+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l 27 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWL 27 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999764
No 410
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.79 E-value=4.3e-08 Score=79.43 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=26.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++|++|+|+||||||||||++.|++..+
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 57899999999999999999999999864
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.79 E-value=3.4e-08 Score=88.43 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=85.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecc-ccccccc----cCcc---hHHHHHhcccceeeeehhhHhhhH
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP-VNLWRDV----KGHN---LLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~-~~~~~~~----~~~~---~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
.+++|++++|+|+||-||||.+|+|+|.+.+.+...+ -.+|.++ .|.. +....++..-+...-+|.--+.|.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 3689999999999999999999999998654332111 1123221 1211 111112111112222332112221
Q ss_pred HHHHHcCCCCccccccc-chhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC-----
Q psy6983 125 LEVHLDQPITPIKMMER-SIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI----- 189 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~----- 189 (210)
. ... .+.+. ...+.+-++.++.+.++|. .-+..+++|++.-+ ++...|+.+|+|++.
T Consensus 176 ~---~KG-----~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~ 247 (591)
T COG1245 176 V---VKG-----KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247 (591)
T ss_pred H---hcc-----hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHH
Confidence 1 111 00010 1112224577788888887 56667788887433 357999999999976
Q ss_pred ---CHHHHHHhhhhcCceeEEeeC
Q psy6983 190 ---TPIKMMERSIHSARFVLVIEK 210 (210)
Q Consensus 190 ---~pe~~l~Ri~~R~r~~~~~~~ 210 (210)
..-..++.+.+-++.|+|||.
T Consensus 248 qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 248 QRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred HHHHHHHHHHHHhccCCeEEEEec
Confidence 334455556666899999983
No 412
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.78 E-value=7.2e-09 Score=84.47 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+++.+|+|.|+||||||||++.|++.+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678899999999999999999999875
No 413
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.75 E-value=6.2e-10 Score=91.46 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
++++|+|||||||||++++|..
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999999973
No 414
>PRK13976 thymidylate kinase; Provisional
Probab=98.75 E-value=1.1e-08 Score=84.01 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+|+|..||||||+++.|+..+
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L 24 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYL 24 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998653
No 415
>PLN02924 thymidylate kinase
Probab=98.74 E-value=9.4e-08 Score=79.05 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
++|.+|+|+|..||||||+++.|+..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 778899999999999999999998764
No 416
>PRK06217 hypothetical protein; Validated
Probab=98.74 E-value=6.9e-08 Score=77.27 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=23.5
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
+...+|.+||||+ |+++|++|+..|.
T Consensus 80 ~~~~~d~~i~Ld~--~~~~~~~Rl~~R~ 105 (183)
T PRK06217 80 LEPLFDLVVFLTI--PPELRLERLRLRE 105 (183)
T ss_pred HHhhCCEEEEEEC--CHHHHHHHHHcCc
Confidence 5667999999999 9999999999885
No 417
>PRK06762 hypothetical protein; Provisional
Probab=98.72 E-value=1.4e-07 Score=74.03 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=24.1
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
....|...||+++ |+++|++|..+|++.
T Consensus 92 ~~~~~~~~v~Lda--p~e~~~~R~~~R~~~ 119 (166)
T PRK06762 92 LFRGNAYTYYFDL--SFEETLRRHSTRPKS 119 (166)
T ss_pred hcCCCeEEEEEeC--CHHHHHHHHhccccc
Confidence 3456889999999 999999999999874
No 418
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.72 E-value=9.8e-08 Score=75.87 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=22.9
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
..||++|||++ |++++++|+..|+.
T Consensus 102 ~~~d~~i~l~~--~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 102 VNFKFVLFFDC--PEEVMIKRLLKRGQ 126 (183)
T ss_pred CCCCEEEEEEC--CHHHHHHHHhcCCc
Confidence 37999999999 99999999999975
No 419
>KOG0064|consensus
Probab=98.71 E-value=1.9e-08 Score=91.31 Aligned_cols=134 Identities=7% Similarity=-0.009 Sum_probs=76.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
++|.+++|..+-|.||||||||+|.|+|+|++++ +.|.-.. ..+.++-|++|.|++- .=+...
T Consensus 501 Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~---------------P~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 501 LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSI---------------PRPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred eeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeec---------------CCCcceEeccCCCccC-cCcccc
Confidence 7888899999999999999999999999999876 2222211 1225689999998643 111112
Q ss_pred cCCCCcc--cccccchhhhHHHHHHHHHHcchh-------hHHhhhhH----HHHHH-------hhccCccEEEEecCCC
Q psy6983 130 DQPITPI--KMMERSIHSARWELTQCQICSQAL-------MYENASRW----SLTFQ-------TMVQKTMLEVHLDQPI 189 (210)
Q Consensus 130 ~~~~~~~--~~~~~s~~e~~~~~~~~L~~~gl~-------~~~~~~~~----s~~~~-------~~~~~Pdl~I~Ld~~~ 189 (210)
++.++.. ...++.. .+ +-..++|..+.|. -|....+| +++.+ -+..+|...+.+|||.
T Consensus 564 QIIYPdS~e~~~~kg~-~d-~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGY-TD-QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred eeecCCcHHHHHhcCC-CH-HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 2222211 1111111 11 1133344444332 13333334 34433 3467999999999986
Q ss_pred ----CHHHHHHhhhhcC
Q psy6983 190 ----TPIKMMERSIHSA 202 (210)
Q Consensus 190 ----~pe~~l~Ri~~R~ 202 (210)
|-|..+=...++-
T Consensus 642 AvsidvE~~i~~~ak~~ 658 (728)
T KOG0064|consen 642 AVSIDVEGKIFQAAKDA 658 (728)
T ss_pred ccccchHHHHHHHHHhc
Confidence 4444444444443
No 420
>PRK14527 adenylate kinase; Provisional
Probab=98.71 E-value=1.7e-07 Score=75.43 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|++|.|+||+||||||+++.|+..++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999996543
No 421
>PHA03135 thymidine kinase; Provisional
Probab=98.71 E-value=1.9e-08 Score=87.38 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhcccc--eeee-----------ehhhHh
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENASR--WSLT-----------FQTMVQ 121 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~v-----------fQ~~~l 121 (210)
.|.|.|+.|+||||+++.+++.. .+.+..||..-|...+ .+.+...|.-..+ -|-+ .|.-+.
T Consensus 12 rIYlDG~~GvGKTT~~~~l~~~~~~~~~vl~vpEPM~YWr~~f-~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q~kfa 90 (343)
T PHA03135 12 RVYLDGPFGIGKTSMLNEMPDHSPDGVPVLKVFEPMKYWRCYF-TDLVVAVNDTPERRRRGELSLFQSSMIVAALQAKFA 90 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEecCcHHHHHHHH-HHHHHHHHHHHhhhhcCCcchhhccHHHHHHHHHhc
Confidence 58899999999999999999863 2777899999886665 2433333322111 1111 122211
Q ss_pred hh------HHHHH-H---cCCC--CcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC
Q psy6983 122 KT------MLEVH-L---DQPI--TPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI 189 (210)
Q Consensus 122 ~~------~~~~~-~---~~~~--~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~ 189 (210)
.| ++... . .... ....++||...++.-.|--+....|...+..+-++...+..-.+..+++|+...
T Consensus 91 tP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~~~l~sl~~~lp~~~pG~niVl~~L~-- 168 (343)
T PHA03135 91 DPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCSLEMLISSIIRLPLEPPGCNLVITILP-- 168 (343)
T ss_pred chHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCCHHHHHHHHHhCCcCCCCCeEEEEECC--
Confidence 11 11111 1 0001 112466777766655555444556665666666554432222344588888888
Q ss_pred CHHHHHHhhhhcCcee
Q psy6983 190 TPIKMMERSIHSARFV 205 (210)
Q Consensus 190 ~pe~~l~Ri~~R~r~~ 205 (210)
+++++++||.+|||+.
T Consensus 169 ~~~E~~rRl~~R~R~g 184 (343)
T PHA03135 169 DEKEHVNRLSSRNRPG 184 (343)
T ss_pred CHHHHHHHHHHcCCCc
Confidence 7899999999999985
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.69 E-value=2.2e-08 Score=81.34 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=28.2
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 48 ~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+..++++.+|++++|.||||||||||++++++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 445566678899999999999999999999953
No 423
>PRK07261 topology modulation protein; Provisional
Probab=98.69 E-value=8.3e-08 Score=76.22 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|+|+|+||||||||++.|+...++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999986543
No 424
>PRK02496 adk adenylate kinase; Provisional
Probab=98.69 E-value=1.7e-07 Score=74.81 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=23.9
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
..||++|+|++ +++.+++|+..|+|.
T Consensus 106 ~~~~~vi~l~~--~~~~~~~Rl~~R~~~ 131 (184)
T PRK02496 106 QSGERVVNLDV--PDDVVVERLLARGRK 131 (184)
T ss_pred CCCCEEEEEeC--CHHHHHHHHhcCCCC
Confidence 47999999999 999999999999874
No 425
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=6.6e-08 Score=75.70 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKM 138 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~ 138 (210)
+|+|.|++||||||+.+.|+..++..+.. .| .-|++..++.||-++++.- +... ..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs---aG----------~iFR~~A~e~gmsl~ef~~------~AE~----~p~ 58 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS---AG----------TIFREMARERGMSLEEFSR------YAEE----DPE 58 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee---cc----------HHHHHHHHHcCCCHHHHHH------HHhc----Cch
Confidence 58999999999999999999987653321 11 1122333556777666421 1111 000
Q ss_pred cccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 139 MERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 139 ~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
.+ ..-| .+..++..+-++. .-..+.+|+.. ..+|+.|||.+ |.++..+|+.+|.
T Consensus 59 iD--~~iD-~rq~e~a~~~nvV---legrLA~Wi~k--~~adlkI~L~A--pl~vRa~Ria~RE 112 (179)
T COG1102 59 ID--KEID-RRQKELAKEGNVV---LEGRLAGWIVR--EYADLKIWLKA--PLEVRAERIAKRE 112 (179)
T ss_pred hh--HHHH-HHHHHHHHcCCeE---EhhhhHHHHhc--cccceEEEEeC--cHHHHHHHHHHhc
Confidence 01 1111 1122222222211 12345555333 57999999999 8899999999985
No 426
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.65 E-value=5e-09 Score=94.79 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLD 75 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk 75 (210)
+|+++.+||+++|+||||||||||++
T Consensus 25 Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 25 FNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CceeecCCCEEEEECCCCCCHHHHHh
Confidence 66778999999999999999999999
No 427
>PRK08233 hypothetical protein; Provisional
Probab=98.65 E-value=6.3e-08 Score=76.58 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+|+|.|++|||||||++.|+..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999998753
No 428
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.63 E-value=2.2e-07 Score=75.41 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.0
Q ss_pred cccccccCCCC-eEEEEEcCCCCcHHHHHHHHh
Q psy6983 47 RMSSSVNNKKP-FTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 47 ~~~~~~~~~~g-~~i~IiG~sGsGKSTLlk~L~ 78 (210)
.+.+|+++.+| ++++|.||||||||||+|+|+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 35577778888 589999999999999999988
No 429
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.62 E-value=5.2e-08 Score=79.74 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=23.2
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
..+|.+|++++ |++++++|+.+|++.
T Consensus 132 ~~~d~ii~V~a--~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 132 AGLDFIVVVAA--DTELRLERAVQRGMG 157 (208)
T ss_pred hcCCeEEEEEC--CHHHHHHHHHHcCCC
Confidence 35799999999 999999999999863
No 430
>PRK13949 shikimate kinase; Provisional
Probab=98.61 E-value=9.5e-08 Score=75.80 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
-|+|+|++||||||+.+.|++.++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~ 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 488999999999999999999876543
No 431
>PRK14531 adenylate kinase; Provisional
Probab=98.61 E-value=3.6e-07 Score=73.17 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=23.5
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
..||.+|++++ |++++++|+..|+|.
T Consensus 106 ~~~~~vi~l~~--~~~~l~~Rl~~R~r~ 131 (183)
T PRK14531 106 QPIEAVVLLEL--DDAVLIERLLARGRA 131 (183)
T ss_pred CCCCeEEEEEC--CHHHHHHHhhcCCCC
Confidence 46899999999 999999999999884
No 432
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.60 E-value=5e-08 Score=81.75 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++|+||||||||||+.+|.+.+.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999998653
No 433
>PRK14532 adenylate kinase; Provisional
Probab=98.59 E-value=4.3e-07 Score=72.69 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.9
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
..||++|+|++ |++++++|+..|.
T Consensus 105 ~~pd~vi~L~v--~~~~~~~Rl~~R~ 128 (188)
T PRK14532 105 QKIDVVIRLKV--DDEALIERIVKRF 128 (188)
T ss_pred CCCCEEEEEEC--CHHHHHHHHHcCc
Confidence 47999999999 9999999999885
No 434
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.58 E-value=8.5e-07 Score=72.46 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..++.+++|+||||||||||++.|....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3678899999999999999999998653
No 435
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.58 E-value=2.6e-07 Score=75.07 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.0
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.+| +.+|+||||||||||+.+|...
T Consensus 18 ~f~~g-l~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 18 EFGPR-VNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred ecCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 34554 7789999999999999999743
No 436
>PHA03134 thymidine kinase; Provisional
Probab=98.57 E-value=2e-07 Score=81.02 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhccc-----ce-----eee---ehhhHh
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENAS-----RW-----SLT---FQTMVQ 121 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~-----~~v---fQ~~~l 121 (210)
.|-|.|+-|.||||+++.|.... ++.+..||..-|...++.+.+...|+..+ ++ +.+ .|.-+.
T Consensus 15 rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~Q~~fa 94 (340)
T PHA03134 15 RIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHYQARFA 94 (340)
T ss_pred EEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHHHHHhc
Confidence 47799999999999999998752 27788999998988877666655554321 11 111 344332
Q ss_pred hhHH------HHHHc--CC--CC---cccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhcc--Cc-cEEEEe
Q psy6983 122 KTML------EVHLD--QP--IT---PIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQ--KT-MLEVHL 185 (210)
Q Consensus 122 ~~~~------~~~~~--~~--~~---~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~--~P-dl~I~L 185 (210)
.|.. ..... .. .+ ...++||...++.-.|--+....|.+.+..+..+.. .++ .| |.+||+
T Consensus 95 tP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~----~~p~~~pG~niVl~ 170 (340)
T PHA03134 95 TPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAA----TLPREPPGGNLVVT 170 (340)
T ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHH----hCCCCCCCCeEEEE
Confidence 2211 11111 00 01 225678877777777888888888875555543222 232 25 899999
Q ss_pred cCCCCHHHHHHhhhhcCcee
Q psy6983 186 DQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 186 d~~~~pe~~l~Ri~~R~r~~ 205 (210)
+. +++++++|+.+|||+.
T Consensus 171 ~l--~~~e~~~Rl~~R~R~g 188 (340)
T PHA03134 171 TL--NPDEHLRRLRARARIG 188 (340)
T ss_pred eC--CHHHHHHHHHHcCCCc
Confidence 99 9999999999999985
No 437
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.56 E-value=8.7e-08 Score=76.57 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=22.5
Q ss_pred CccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 178 KTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 178 ~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.||++||||+ +|+++++|+..|+.
T Consensus 118 ~PDl~~~Ldv--~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 118 KPDLTFFLDV--DPEEALKRIAKRGE 141 (186)
T ss_dssp E-SEEEEEEC--CHHHHHHHHHHTSS
T ss_pred CCCEEEEEec--CHHHHHHHHHcCCc
Confidence 9999999999 99999999999987
No 438
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.55 E-value=2.4e-07 Score=75.08 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++|++++|+|+|||||||+++.|++.+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999999999999999999864
No 439
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.54 E-value=4.8e-07 Score=71.27 Aligned_cols=24 Identities=8% Similarity=-0.128 Sum_probs=20.9
Q ss_pred CccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 178 KTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 178 ~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.|=..||+++ |++++.+|+..|..
T Consensus 90 ~~~~~v~l~a--~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 90 PNLSFIYLKG--DFDVIESRLKARKG 113 (163)
T ss_pred CCEEEEEEEC--CHHHHHHHHHhccC
Confidence 4557799999 99999999999975
No 440
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.52 E-value=1.1e-07 Score=76.71 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+|.||||||||||+++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 441
>PLN02200 adenylate kinase family protein
Probab=98.52 E-value=1.1e-06 Score=73.44 Aligned_cols=33 Identities=36% Similarity=0.467 Sum_probs=27.2
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 51 ~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+...+...+|+|+|++||||||+++.|+..+++
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333566679999999999999999999987654
No 442
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=84.44 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=73.1
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh---hHHHHHH
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK---TMLEVHL 129 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~---~~~~~~~ 129 (210)
++..||+|+++||||-||||+.++|||.....-. ... .-+++|-+|.-... +....+.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg-~~~------------------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG-SEE------------------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCC-CCc------------------cceEeecceeecCCCCCcHHHHHH
Confidence 4678999999999999999999999998643211 100 03456666653211 1111111
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
.. .++.....+...++++.+.+. .-....++|++..+ +....|+.+.+|++. |.|
T Consensus 424 ~~--------~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 424 SA--------IRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred Hh--------hhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 11 001011122334445545554 22334567776433 356889999999987 333
Q ss_pred HHHHhhhh-cCceeEEee
Q psy6983 193 KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~~-R~r~~~~~~ 209 (210)
..+.|+.+ ++...||||
T Consensus 496 kvIRR~~e~~~kta~vVd 513 (591)
T COG1245 496 KVIRRFIENNEKTALVVD 513 (591)
T ss_pred HHHHHHHhhcCceEEEEe
Confidence 34455544 556677776
No 443
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.51 E-value=4.7e-07 Score=71.97 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
+.|+|+|++||||||+++.|++..+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~ 31 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence 469999999999999999999876544
No 444
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.50 E-value=9.1e-08 Score=79.31 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++..+++|.|+||||||||++.|++.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6678999999999999999999998753
No 445
>PRK13808 adenylate kinase; Provisional
Probab=98.48 E-value=7.7e-07 Score=77.71 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|.|+||+||||||+++.|+..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999987654
No 446
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.48 E-value=2.4e-07 Score=70.36 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=24.1
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCcee
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
.+.+-.+|++++ +++++.+|+..|++..
T Consensus 95 ~~~~~~~v~l~~--~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 95 HGYPVRVVYLDA--PEETLRERLAQRNREG 122 (143)
T ss_dssp CTEEEEEEEECH--HHHHHHHHHHTTHCCC
T ss_pred cCCeEEEEEEEC--CHHHHHHHHHhcCCcc
Confidence 345778899999 9999999999999873
No 447
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.48 E-value=8.1e-07 Score=69.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
|+|+||+||||||+++.|++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998765
No 448
>PRK14528 adenylate kinase; Provisional
Probab=98.47 E-value=1.6e-06 Score=69.72 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.0
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
..||++|+||+ |++++++|+..|.
T Consensus 106 ~~~d~vI~Ld~--~~~~~~~Rl~~R~ 129 (186)
T PRK14528 106 KSIDKAINLEV--PDGELLKRLLGRA 129 (186)
T ss_pred CCCCEEEEEEC--CHHHHHHHHhcCc
Confidence 47999999999 9999999999883
No 449
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.46 E-value=1e-06 Score=69.88 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|.+|.|.|++||||||+++.|+...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999999764
No 450
>PRK14530 adenylate kinase; Provisional
Probab=98.45 E-value=1.8e-06 Score=70.70 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|+|+|++||||||+++.|+..+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999987664
No 451
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.45 E-value=1.8e-07 Score=80.31 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+...+|||.|+|||||||++++|.++.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 556799999999999999999998764
No 452
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.42 E-value=8.6e-07 Score=80.87 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=96.7
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhh---H
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---V 120 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~ 120 (210)
.+||++++||+++|.|--|||+|-++++|.|.. .+.+.|+++.- .+..... ...++||+.+- .
T Consensus 277 dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~------~sp~~Ai---~~Gi~~v~EDRk~~G 347 (500)
T COG1129 277 DVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRI------RSPRDAI---KAGIAYVPEDRKSEG 347 (500)
T ss_pred CceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccC------CCHHHHH---HcCCEeCCcccccCc
Confidence 467888999999999999999999999999953 35556665542 1111212 24578887663 2
Q ss_pred hhhHHHHHHcCCCCcc-----c-ccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHH-------hhccCccEEEE
Q psy6983 121 QKTMLEVHLDQPITPI-----K-MMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQ-------TMVQKTMLEVH 184 (210)
Q Consensus 121 l~~~~~~~~~~~~~~~-----~-~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~-------~~~~~Pdl~I~ 184 (210)
++..+.+..+...... . +.+ ....+..+.+....+++- .......+|++=| ++...|+++|+
T Consensus 348 l~l~~sI~~Ni~l~~l~~~~~~~~i~--~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 348 LVLDMSIAENITLASLRRFSRRGLID--RRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CcCCCcHHHheehHhhhhhccccccC--hHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 3333333333221111 0 122 122234566666666654 3344556777533 35679999999
Q ss_pred ecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 185 LDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 185 Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
+|||. +--..+.++...|+.+++|-
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iS 458 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEe
Confidence 99986 77889999999999999974
No 453
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.41 E-value=1.3e-06 Score=85.61 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHHcchhh---HHhhhhHHHHHHhh-------ccCc---cEEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 151 TQCQICSQALM---YENASRWSLTFQTM-------VQKT---MLEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 151 ~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~P---dl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
.+.|+.+|+.. ......+|++++++ +..| +++|++|++. ++ ...++++..+|..+|+++
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34566677652 23456788887553 4577 8999999987 33 445777777899999987
No 454
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.41 E-value=8.3e-07 Score=91.15 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=41.5
Q ss_pred HHHHHcchhhH---HhhhhHHHHHHhh-------c---cCccEEEEecCCC--C------HHHHHHhhhhcCceeEEee
Q psy6983 152 QCQICSQALMY---ENASRWSLTFQTM-------V---QKTMLEVHLDQPI--T------PIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 152 ~~L~~~gl~~~---~~~~~~s~~~~~~-------~---~~Pdl~I~Ld~~~--~------pe~~l~Ri~~R~r~~~~~~ 209 (210)
++|+.+|+..+ ....++|++++++ + ..|+++|++||+. + ....+.++.++|..+++|+
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 47777887632 3456788887553 2 4899999999987 3 3345667777899999987
No 455
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.41 E-value=1.2e-06 Score=69.50 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++|.+|+++|++||||||+++.|++.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4788899999999999999999998764
No 456
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.41 E-value=6.2e-07 Score=72.89 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.7
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
...|.+|++++ |++++++|+.+|+
T Consensus 120 ~~~D~vi~V~a--~~e~r~~RL~~R~ 143 (196)
T PRK14732 120 TLCDATVTVDS--DPEESILRTISRD 143 (196)
T ss_pred hhCCEEEEEEC--CHHHHHHHHHHcC
Confidence 35799999999 9999999999995
No 457
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.41 E-value=1.5e-07 Score=77.86 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++|.|+||||||||++.|++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999875
No 458
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.40 E-value=1.3e-06 Score=71.95 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=24.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++..++ ++++|.|||||||||++|++++.
T Consensus 24 ~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 24 TELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred EEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 4454454 89999999999999999999863
No 459
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.40 E-value=2.3e-06 Score=69.94 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=21.5
Q ss_pred CccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 178 KTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 178 ~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
.||++|+|++ |.+++++|+..|.
T Consensus 103 ~~~~vi~L~~--~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 103 KIDAVIELDV--PDEELVERLSGRR 125 (210)
T ss_pred CCCEEEEEEC--CHHHHHHHHHCCC
Confidence 7999999999 8899999999885
No 460
>PRK14529 adenylate kinase; Provisional
Probab=98.37 E-value=3.7e-06 Score=69.68 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|.|+||+||||||+++.|+..+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3789999999999999999987653
No 461
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.37 E-value=3.3e-06 Score=67.47 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=23.0
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
..|+++|+|++ |++++++|+..|+.
T Consensus 103 ~~~~~~i~l~~--~~~~~~~Rl~~R~~ 127 (194)
T cd01428 103 IKPDKVIELDV--PDEVLIERILGRRI 127 (194)
T ss_pred CCCCEEEEEEC--CHHHHHHHHHcCCc
Confidence 38999999999 99999999999974
No 462
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.36 E-value=1.1e-06 Score=80.88 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
++.+|+|.|||||||||+++.|+..+++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~ 310 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGL 310 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7789999999999999999999987653
No 463
>PRK03839 putative kinase; Provisional
Probab=98.35 E-value=1.9e-06 Score=68.49 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
.|.|+|++||||||+.+.|+..+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58899999999999999999986643
No 464
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.34 E-value=2.7e-06 Score=68.87 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.4
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
..+|.+|++++ |++++++|+.+|++
T Consensus 123 ~~~D~vi~V~a--~~e~~~~Rl~~R~~ 147 (194)
T PRK00081 123 KLVDRVLVVDA--PPETQLERLMARDG 147 (194)
T ss_pred hhCCeEEEEEC--CHHHHHHHHHHcCC
Confidence 46899999999 99999999999864
No 465
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.33 E-value=1.2e-06 Score=71.18 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+|+|.|++||||||+++.|+..++
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g 26 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKG 26 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 699999999999999999998744
No 466
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.32 E-value=1.3e-06 Score=68.41 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=28.5
Q ss_pred HHHHHHHcchh----hHHhhhhHHHHHHhhccC-ccEEEEecCCCCHHHHHHh
Q psy6983 150 LTQCQICSQAL----MYENASRWSLTFQTMVQK-TMLEVHLDQPITPIKMMER 197 (210)
Q Consensus 150 ~~~~L~~~gl~----~~~~~~~~s~~~~~~~~~-Pdl~I~Ld~~~~pe~~l~R 197 (210)
++.+|...|.. ....|.++....+..++. +=+-||+++ |.++|++|
T Consensus 66 ~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~--~~e~~~~R 116 (156)
T PF01583_consen 66 VAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDC--PLEVCRKR 116 (156)
T ss_dssp HHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES---HHHHHHH
T ss_pred HHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCC--CHHHHHHh
Confidence 44556666665 444455555555556553 557899999 88999999
No 467
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.30 E-value=2.2e-06 Score=68.21 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=64.7
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQ 131 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~ 131 (210)
..++|.++=+.|.|||||||++.+|...+. ..+.-..++| .++.. -..+..||--++ +.+++.-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG------DnvR~---gL~~dLgFs~ed-----R~eniRR- 83 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG------DNVRH---GLNRDLGFSRED-----RIENIRR- 83 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC------hhHhh---cccCCCCCChHH-----HHHHHHH-
Confidence 357788999999999999999999987531 1000111121 11111 111344544332 1121111
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchh----hHHhhhhHHHHHHhhccC-ccEEEEecCCCCHHHHHHh
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQAL----MYENASRWSLTFQTMVQK-TMLEVHLDQPITPIKMMER 197 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~----~~~~~~~~s~~~~~~~~~-Pdl~I~Ld~~~~pe~~l~R 197 (210)
...++++|...|++ ....|.+.....+.++.. .=+-||+|+ |.++|.+|
T Consensus 84 ---------------vaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~--pl~vce~R 137 (197)
T COG0529 84 ---------------VAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDT--PLEVCERR 137 (197)
T ss_pred ---------------HHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCC--CHHHHHhc
Confidence 01245667777776 444455555555556654 446799999 88999998
No 468
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.28 E-value=6.3e-07 Score=76.43 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++|.|+|||||||+++.|++.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 489999999999999999998753
No 469
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.28 E-value=1.8e-06 Score=66.32 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
|+|+|++||||||+.+.|+..+++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999876543
No 470
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.28 E-value=3.3e-06 Score=71.94 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..++|+||+|||||||+++|++...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5789999999999999999999864
No 471
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.26 E-value=1.6e-06 Score=69.93 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=24.2
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCcee
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
....|+.||+++ |++++++|..+|+-.+
T Consensus 128 ~~l~D~~Ifvd~--~~d~~~~Rr~~R~~~~ 155 (187)
T cd02024 128 VDLFDIRYFLRV--PYETCKRRREARTGYV 155 (187)
T ss_pred HhhcCceeEecC--CHHHHHHHHHHcCCcc
Confidence 457899999999 9999999999997544
No 472
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.26 E-value=1.1e-05 Score=66.14 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|.|+|++||||||+++.|+..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987654
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.25 E-value=2.2e-06 Score=67.03 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.++..|.|+|++||||||+.+.|+..++.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45678999999999999999999987654
No 474
>PTZ00301 uridine kinase; Provisional
Probab=98.24 E-value=7.1e-07 Score=73.33 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+|+|.|+||||||||++.|+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 4899999999999999987764
No 475
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.24 E-value=5.5e-06 Score=67.45 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+|.|.+||||||+++.|+..+
T Consensus 3 ~igitG~igsGKst~~~~l~~~g 25 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEG 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
Confidence 69999999999999999999754
No 476
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.24 E-value=2.7e-06 Score=67.51 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
-|.++|+.||||||+-+.||..++..+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999999877654
No 477
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.23 E-value=1.2e-05 Score=64.85 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+|.+++|+||||||||||++.|....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 357799999999999999999998764
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.23 E-value=6.4e-07 Score=71.92 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=29.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+.+++|+.++|+||+|||||||+++|+++.+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455678899999999999999999999999854
No 479
>PRK13948 shikimate kinase; Provisional
Probab=98.23 E-value=4e-06 Score=67.42 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
.++..|+|+|.+||||||+.+.|+..++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~ 38 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHF 38 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 4557899999999999999999998765443
No 480
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=1.2e-05 Score=64.39 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+|.+++|.||||+||||++++|....+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 688999999999999999999987543
No 481
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.21 E-value=3.4e-06 Score=67.27 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.7
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
...|.+|++++ |+++.++|+.+|+
T Consensus 120 ~~~D~vv~V~a--~~~~ri~Rl~~Rd 143 (179)
T cd02022 120 KLVDRVIVVDA--PPEIQIERLMKRD 143 (179)
T ss_pred HhCCeEEEEEC--CHHHHHHHHHHcC
Confidence 46799999999 9999999999985
No 482
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.19 E-value=1.1e-06 Score=72.42 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|.||+||||||+++.|++.+++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~ 28 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGY 28 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999976543
No 483
>KOG3079|consensus
Probab=98.19 E-value=1.6e-05 Score=63.50 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPIT 134 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~ 134 (210)
....+|.|+|.+||||=|.+.-|++.++..... . .++|..-. .+- -.|...+.. +.+.++..-
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlS---a-------GdLLR~E~---~~~--gse~g~~I~--~~i~~G~iV 68 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLS---A-------GDLLRAEI---ASA--GSERGALIK--EIIKNGDLV 68 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeec---H-------HHHHHHHH---ccc--cChHHHHHH--HHHHcCCcC
Confidence 344589999999999999999999887643211 1 12222111 110 122222211 122222100
Q ss_pred cccccccchhhhHHHHHHHHHHcch----h---hHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 135 PIKMMERSIHSARWELTQCQICSQA----L---MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 135 ~~~~~~~s~~e~~~~~~~~L~~~gl----~---~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
+.+.-.....+.|...+- . --+..+++.++-+.+-..|++.+|+|| +.|+|++|+..||+.
T Consensus 69 -------P~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc--~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 69 -------PVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDC--PEETMLKRLLHRGQS 136 (195)
T ss_pred -------cHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeC--CHHHHHHHHHhhccc
Confidence 111111222233322221 1 112223333332333337999999999 889999999999985
No 484
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.4e-06 Score=67.06 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|.+|.++|||||||-||+......
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~ 28 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARAR 28 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHH
Confidence 6889999999999999999887654
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.18 E-value=1.7e-06 Score=57.41 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|.++.|.|+|||||||++.++.-.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988643
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.17 E-value=4.5e-06 Score=66.14 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.8
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
+++.||++|.|++ +|+.+.+|++.||=
T Consensus 79 l~~~~dlVvVLR~--~p~~L~~RLk~RGy 105 (180)
T COG1936 79 LLPDCDLVVVLRA--DPEVLYERLKGRGY 105 (180)
T ss_pred cCCCCCEEEEEcC--CHHHHHHHHHHcCC
Confidence 5667999999999 99999999999983
No 487
>PLN02674 adenylate kinase
Probab=98.17 E-value=1.8e-05 Score=66.42 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
...|.|+||+||||||+++.|+..+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999987664
No 488
>PRK08356 hypothetical protein; Provisional
Probab=98.17 E-value=1.1e-05 Score=65.22 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+|+|+||+||||||+++.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 489
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=98.14 E-value=6.7e-06 Score=69.89 Aligned_cols=137 Identities=21% Similarity=0.264 Sum_probs=80.3
Q ss_pred cCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhcccc-----ee--------eeehhhHhhhHHH
Q psy6983 64 GNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENASR-----WS--------LTFQTMVQKTMLE 126 (210)
Q Consensus 64 G~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~--------~vfQ~~~l~~~~~ 126 (210)
|+-|.||||+++.+++.. ++.+..||..-|...++.|.+...|+..++ ++ .-.|..+..|...
T Consensus 1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP~~~ 80 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEALPAGDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATPYLA 80 (281)
T ss_dssp SSTTSSHHHHHHHHHHCCTSSCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHccCCCCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcchHHH
Confidence 889999999999999875 367889999999998888877666642211 11 1124433333322
Q ss_pred HHH---cC-------C---CC-cccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhh--ccCccEEEEecCCCC
Q psy6983 127 VHL---DQ-------P---IT-PIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTM--VQKTMLEVHLDQPIT 190 (210)
Q Consensus 127 ~~~---~~-------~---~~-~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~--~~~Pdl~I~Ld~~~~ 190 (210)
... .. . .+ ...++||...++.-.|--+....|.+.+.+.-.+ +..+ .+..+.+|..+. +
T Consensus 81 ~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~l---la~~p~~~pG~niVl~~L--~ 155 (281)
T PF00693_consen 81 LHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISL---LATFPPEPPGTNIVLMTL--P 155 (281)
T ss_dssp HHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHH---HTTS----TTEEEEEEE----
T ss_pred HHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHH---HHhCCCCCCCCEEEEEeC--C
Confidence 111 11 0 01 1245677776665566666666776544443332 1112 135577888999 8
Q ss_pred HHHHHHhhhhcCcee
Q psy6983 191 PIKMMERSIHSARFV 205 (210)
Q Consensus 191 pe~~l~Ri~~R~r~~ 205 (210)
+++-++||++|+|++
T Consensus 156 ~~E~~rRl~~R~R~g 170 (281)
T PF00693_consen 156 EEEHLRRLKARGRPG 170 (281)
T ss_dssp HHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999999986
No 490
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.14 E-value=1.8e-06 Score=71.71 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|++++|+||||||||||+++|.+.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999854
No 491
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.13 E-value=2.6e-05 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
++.|.|++||||||+++.|+...+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC
Confidence 4689999999999999999987554
No 492
>PRK07429 phosphoribulokinase; Provisional
Probab=98.13 E-value=3.8e-06 Score=73.42 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++.-+|+|.|+|||||||+++.|++.++
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 3445899999999999999999998754
No 493
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.12 E-value=1.1e-05 Score=69.93 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.0
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
-.+.++..|+|+|.+||||||+.+.|+..+++.+
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~ 161 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPF 161 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3467888999999999999999999998766543
No 494
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.12 E-value=7.8e-06 Score=63.17 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=19.4
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhh
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIH 200 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~ 200 (210)
....|+.+|+|++ +.+.+++|+..
T Consensus 99 ~~~~~~~vi~L~~--~~~~~~~R~~~ 122 (151)
T PF00406_consen 99 EGIPPDLVIFLDC--PDETLIERLSQ 122 (151)
T ss_dssp TTSEESEEEEEE----HHHHHHHHHT
T ss_pred cccchheeecccc--chhhhhhhccc
Confidence 4568999999999 88999999876
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.11 E-value=1.6e-06 Score=64.10 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|.|++||||||+++.|+..+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999987554
No 496
>PRK01184 hypothetical protein; Provisional
Probab=98.11 E-value=4.1e-05 Score=60.95 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHhhccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 172 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 172 ~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
++..++.+..+|++++ |++++++|+..|+|.
T Consensus 97 ~~~~~~~~~~~i~v~~--~~~~~~~Rl~~R~~~ 127 (184)
T PRK01184 97 FRKEFPEDFILIAIHA--PPEVRFERLKKRGRS 127 (184)
T ss_pred HHHhCCcccEEEEEEC--CHHHHHHHHHHcCCC
Confidence 3334555778999999 999999999999863
No 497
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=2.9e-06 Score=76.76 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=28.4
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++.+|+.++|+|+||||||||+++|+++..
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~ 190 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARADA 190 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999999999999854
No 498
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=2.3e-06 Score=70.38 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.-+|+|.|+|||||||+++.|...++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999998754
No 499
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.10 E-value=3.8e-06 Score=75.99 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=61.6
Q ss_pred CccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc------ceeeccccccccccCcchH---HH-HHhcccceee
Q psy6983 45 GKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI------TAYAEPVNLWRDVKGHNLL---AL-MYENASRWSL 114 (210)
Q Consensus 45 ~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i------~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~ 114 (210)
.+-+...+++.+|+.++|+|+||+|||||+++|++.... .+.||. |.++. .. ..+...+.++
T Consensus 152 i~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGer--------g~ev~~~~~~~l~~~g~~~sv 223 (442)
T PRK06315 152 VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGER--------GREVREFIEGDLGEEGMKRSV 223 (442)
T ss_pred EEEEeccccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCC--------chHHHHHHHHHHHhcCCceEE
Confidence 344445588999999999999999999999999987521 111111 12221 11 1111123455
Q ss_pred e-----ehhhH--hhhHHHHHHcCCCCccccccc---chhhhHHHHHHHHHHcchh
Q psy6983 115 T-----FQTMV--QKTMLEVHLDQPITPIKMMER---SIHSARWELTQCQICSQAL 160 (210)
Q Consensus 115 v-----fQ~~~--l~~~~~~~~~~~~~~~~~~~~---s~~e~~~~~~~~L~~~gl~ 160 (210)
+ ||++. +++.+ ......+. ...+.. ...++..++++++.++++.
T Consensus 224 vvvats~q~p~~rlnp~~-va~~IAE~-~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 224 IVVSTSDQSSQLRLNAAY-VGTAIAEY-FRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred EEEeCCCCCHHHHhhHHH-HHHHHHHH-HHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 5 99874 44544 22222111 111111 2356678899999999993
No 500
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.10 E-value=3.3e-05 Score=66.41 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
...++|+|.|+|||||||+++.|...+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~~g 30 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALEDLG 30 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHcC
Confidence 345689999999999999999997543
Done!