Query psy6983
Match_columns 210
No_of_seqs 240 out of 2281
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 99.9 8.4E-23 2.9E-27 179.7 5.3 165 30-209 4-191 (381)
2 3tui_C Methionine import ATP-b 99.9 9.8E-23 3.4E-27 178.3 5.4 170 30-209 25-221 (366)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 3.1E-22 1.1E-26 174.8 7.3 168 31-209 6-196 (359)
4 3gfo_A Cobalt import ATP-bindi 99.8 1.5E-21 5.3E-26 165.0 9.2 168 30-209 8-201 (275)
5 3tif_A Uncharacterized ABC tra 99.8 4.1E-22 1.4E-26 164.8 5.4 154 50-209 24-203 (235)
6 1b0u_A Histidine permease; ABC 99.8 2.3E-22 8E-27 168.8 3.8 177 30-209 7-210 (262)
7 1vpl_A ABC transporter, ATP-bi 99.8 3E-22 1E-26 167.7 4.2 173 28-209 14-203 (256)
8 2olj_A Amino acid ABC transpor 99.8 1.8E-22 6.2E-27 169.7 2.7 170 30-209 25-216 (263)
9 1g6h_A High-affinity branched- 99.8 5.8E-22 2E-26 165.9 5.0 169 30-209 8-210 (257)
10 1z47_A CYSA, putative ABC-tran 99.8 1.1E-21 3.8E-26 171.2 6.8 165 30-209 15-203 (355)
11 2yyz_A Sugar ABC transporter, 99.8 1.1E-21 3.6E-26 171.6 5.6 163 32-209 6-191 (359)
12 2pcj_A ABC transporter, lipopr 99.8 9.8E-22 3.3E-26 161.4 4.7 168 32-209 7-197 (224)
13 1oxx_K GLCV, glucose, ABC tran 99.8 4.7E-22 1.6E-26 173.6 2.7 168 32-209 6-198 (353)
14 2it1_A 362AA long hypothetical 99.8 1.3E-21 4.5E-26 171.2 4.8 164 31-209 5-191 (362)
15 1v43_A Sugar-binding transport 99.8 1.5E-21 5.3E-26 171.3 4.9 165 30-209 12-199 (372)
16 1g29_1 MALK, maltose transport 99.8 1.5E-21 5.2E-26 171.4 3.8 169 32-209 6-197 (372)
17 2vp4_A Deoxynucleoside kinase; 99.8 4.5E-20 1.6E-24 151.3 12.1 150 53-204 16-170 (230)
18 2ihy_A ABC transporter, ATP-bi 99.8 1.8E-20 6.1E-25 158.7 8.2 172 30-209 22-220 (279)
19 3d31_A Sulfate/molybdate ABC t 99.8 3.1E-21 1E-25 168.1 2.2 158 33-209 5-185 (348)
20 1ji0_A ABC transporter; ATP bi 99.8 1.2E-20 4.1E-25 156.3 5.2 166 31-209 8-196 (240)
21 4g1u_C Hemin import ATP-bindin 99.8 4.8E-21 1.6E-25 161.2 2.3 162 30-209 12-205 (266)
22 2yz2_A Putative ABC transporte 99.8 2.3E-20 7.8E-25 156.9 5.1 147 50-209 26-195 (266)
23 1sgw_A Putative ABC transporte 99.8 8.5E-21 2.9E-25 154.9 2.3 164 30-209 11-190 (214)
24 2nq2_C Hypothetical ABC transp 99.8 6.1E-20 2.1E-24 153.3 5.3 159 31-209 6-186 (253)
25 2onk_A Molybdate/tungstate ABC 99.8 4.1E-20 1.4E-24 153.3 3.3 162 33-209 5-184 (240)
26 2d2e_A SUFC protein; ABC-ATPas 99.8 2.5E-20 8.6E-25 155.3 1.3 170 32-209 6-200 (250)
27 2zu0_C Probable ATP-dependent 99.8 4.4E-20 1.5E-24 155.3 2.1 174 30-209 21-221 (267)
28 2ff7_A Alpha-hemolysin translo 99.8 1.4E-19 4.8E-24 150.6 5.1 160 29-209 7-201 (247)
29 2ixe_A Antigen peptide transpo 99.8 5.6E-19 1.9E-23 148.9 7.2 169 30-209 17-214 (271)
30 1mv5_A LMRA, multidrug resista 99.8 7.2E-19 2.5E-23 145.8 6.7 157 33-209 5-195 (243)
31 2qi9_C Vitamin B12 import ATP- 99.7 4.8E-19 1.6E-23 147.6 3.9 147 50-209 19-190 (249)
32 3nh6_A ATP-binding cassette SU 99.7 1.2E-18 4.1E-23 149.3 6.2 158 29-209 53-246 (306)
33 3gd7_A Fusion complex of cysti 99.7 7.8E-19 2.7E-23 155.0 4.6 160 29-209 19-211 (390)
34 3b5x_A Lipid A export ATP-bind 99.7 7.5E-18 2.6E-22 155.5 9.8 165 29-209 341-536 (582)
35 2ghi_A Transport protein; mult 99.7 3.7E-18 1.3E-22 143.0 6.4 160 30-209 18-211 (260)
36 3b60_A Lipid A export ATP-bind 99.7 7.9E-18 2.7E-22 155.4 5.2 159 29-209 341-536 (582)
37 4a82_A Cystic fibrosis transme 99.7 1.3E-17 4.5E-22 153.8 4.8 162 29-209 339-533 (578)
38 2pjz_A Hypothetical protein ST 99.7 6.9E-18 2.4E-22 141.7 2.7 142 50-208 24-181 (263)
39 2yl4_A ATP-binding cassette SU 99.7 1.6E-17 5.4E-22 153.7 4.4 162 30-209 342-539 (595)
40 3qf4_A ABC transporter, ATP-bi 99.7 1.2E-17 4.1E-22 154.4 2.8 162 29-209 341-535 (587)
41 2pze_A Cystic fibrosis transme 99.7 8.3E-17 2.8E-21 132.3 6.7 149 30-209 7-187 (229)
42 3qf4_B Uncharacterized ABC tra 99.6 1.1E-16 3.7E-21 148.3 6.5 158 29-209 354-547 (598)
43 2cbz_A Multidrug resistance-as 99.6 6.7E-17 2.3E-21 133.6 3.7 151 31-209 5-186 (237)
44 2ocp_A DGK, deoxyguanosine kin 99.6 2.5E-15 8.7E-20 123.5 13.0 147 56-204 1-173 (241)
45 4f4c_A Multidrug resistance pr 99.6 3.6E-16 1.2E-20 155.9 7.5 162 29-208 1076-1272(1321)
46 4f4c_A Multidrug resistance pr 99.6 1.4E-15 4.9E-20 151.6 9.5 159 29-208 415-609 (1321)
47 1yqt_A RNAse L inhibitor; ATP- 99.6 4.5E-15 1.5E-19 135.9 9.8 164 33-209 25-215 (538)
48 1p5z_B DCK, deoxycytidine kina 99.6 7.1E-15 2.4E-19 122.4 10.0 148 55-204 22-198 (263)
49 3bk7_A ABC transporter ATP-bin 99.6 6.4E-15 2.2E-19 136.6 10.3 161 33-209 95-285 (607)
50 2bbs_A Cystic fibrosis transme 99.6 2.6E-15 8.9E-20 127.6 6.6 146 30-209 41-216 (290)
51 3g5u_A MCG1178, multidrug resi 99.5 2.1E-15 7.2E-20 150.0 5.2 160 29-209 387-582 (1284)
52 3bk7_A ABC transporter ATP-bin 99.5 4.8E-15 1.6E-19 137.5 6.0 137 50-209 375-529 (607)
53 2jaq_A Deoxyguanosine kinase; 99.5 2.5E-14 8.6E-19 113.3 9.0 137 59-204 2-148 (205)
54 3tr0_A Guanylate kinase, GMP k 99.5 1.7E-14 5.9E-19 114.7 8.0 137 51-204 1-142 (205)
55 3ozx_A RNAse L inhibitor; ATP 99.5 5.3E-15 1.8E-19 135.5 4.1 136 50-209 287-443 (538)
56 1yqt_A RNAse L inhibitor; ATP- 99.5 7.2E-15 2.5E-19 134.6 4.8 137 50-209 305-459 (538)
57 3g5u_A MCG1178, multidrug resi 99.5 7.7E-15 2.6E-19 146.0 5.2 164 29-209 1030-1227(1284)
58 3j16_B RLI1P; ribosome recycli 99.5 5.4E-14 1.8E-18 130.4 9.8 170 34-209 82-278 (608)
59 1p6x_A Thymidine kinase; P-loo 99.5 5.8E-14 2E-18 121.4 7.1 144 55-204 5-181 (334)
60 1z6g_A Guanylate kinase; struc 99.4 1.8E-13 6.3E-18 111.2 7.2 137 50-204 16-161 (218)
61 2iw3_A Elongation factor 3A; a 99.4 8.2E-14 2.8E-18 134.6 5.3 145 33-209 439-602 (986)
62 3j16_B RLI1P; ribosome recycli 99.4 1.1E-13 3.6E-18 128.4 5.1 134 50-209 366-525 (608)
63 3ozx_A RNAse L inhibitor; ATP 99.4 4.3E-13 1.5E-17 122.8 7.1 146 54-209 22-194 (538)
64 1of1_A Thymidine kinase; trans 99.4 4.1E-13 1.4E-17 117.5 5.6 147 55-204 47-223 (376)
65 2iw3_A Elongation factor 3A; a 99.4 1.3E-12 4.5E-17 126.3 8.9 51 31-83 673-725 (986)
66 3ux8_A Excinuclease ABC, A sub 99.4 4.6E-13 1.6E-17 125.3 5.5 58 152-209 184-261 (670)
67 1znw_A Guanylate kinase, GMP k 99.3 8.3E-13 2.9E-17 106.0 5.9 66 53-128 16-82 (207)
68 1e2k_A Thymidine kinase; trans 99.3 1.4E-12 4.8E-17 112.6 7.4 146 56-204 3-178 (331)
69 3aez_A Pantothenate kinase; tr 99.3 1E-12 3.5E-17 112.6 5.3 121 54-201 87-238 (312)
70 1osn_A Thymidine kinase, VZV-T 99.3 1.5E-12 5.1E-17 112.8 6.1 147 55-204 10-190 (341)
71 4eun_A Thermoresistant glucoki 99.3 3.5E-12 1.2E-16 101.7 6.2 118 54-203 26-147 (200)
72 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.1E-13 3.7E-18 124.6 -4.3 142 50-208 131-294 (460)
73 4hlc_A DTMP kinase, thymidylat 99.3 6.6E-12 2.3E-16 101.4 6.6 132 57-204 2-148 (205)
74 3b9q_A Chloroplast SRP recepto 99.3 3E-12 1E-16 109.3 4.6 146 50-210 93-255 (302)
75 3lnc_A Guanylate kinase, GMP k 99.2 2.6E-12 9E-17 104.6 3.7 137 49-204 19-164 (231)
76 4gp7_A Metallophosphoesterase; 99.2 5.9E-12 2E-16 98.3 5.0 30 50-79 2-31 (171)
77 1s96_A Guanylate kinase, GMP k 99.2 3.7E-11 1.3E-15 97.9 8.6 131 54-203 13-152 (219)
78 3asz_A Uridine kinase; cytidin 99.2 2.6E-12 8.9E-17 102.8 1.0 28 54-81 3-30 (211)
79 3b85_A Phosphate starvation-in 99.2 2.5E-12 8.7E-17 104.1 -0.2 127 55-206 20-153 (208)
80 2og2_A Putative signal recogni 99.2 1.7E-11 5.7E-16 107.1 4.9 147 49-210 149-312 (359)
81 4eaq_A DTMP kinase, thymidylat 99.1 6.3E-11 2.2E-15 97.0 7.1 28 54-81 23-50 (229)
82 3ux8_A Excinuclease ABC, A sub 99.1 2.6E-11 8.8E-16 113.5 5.1 61 149-209 522-603 (670)
83 3ld9_A DTMP kinase, thymidylat 99.1 3.1E-11 1.1E-15 98.8 4.9 134 55-203 19-167 (223)
84 3kb2_A SPBC2 prophage-derived 99.1 9E-11 3.1E-15 90.2 6.9 30 174-205 90-119 (173)
85 1knq_A Gluconate kinase; ALFA/ 99.1 2.9E-10 1E-14 88.2 9.3 28 55-82 6-33 (175)
86 2jeo_A Uridine-cytidine kinase 99.1 8E-11 2.8E-15 96.8 5.1 32 50-81 18-49 (245)
87 4edh_A DTMP kinase, thymidylat 99.1 2.4E-10 8.2E-15 92.7 7.7 134 56-203 5-154 (213)
88 2j41_A Guanylate kinase; GMP, 99.1 1.8E-10 6.2E-15 91.3 6.7 29 53-81 2-30 (207)
89 3t61_A Gluconokinase; PSI-biol 99.0 2.5E-10 8.7E-15 90.7 6.7 114 57-203 18-133 (202)
90 3c8u_A Fructokinase; YP_612366 99.0 1.3E-11 4.4E-16 99.1 -0.9 29 54-82 19-47 (208)
91 3sop_A Neuronal-specific septi 99.0 4.7E-11 1.6E-15 100.3 2.5 130 59-208 4-146 (270)
92 3v9p_A DTMP kinase, thymidylat 99.0 9.8E-11 3.3E-15 96.0 3.7 132 54-202 22-173 (227)
93 1rj9_A FTSY, signal recognitio 99.0 1.9E-10 6.5E-15 98.2 5.3 67 55-125 100-171 (304)
94 4tmk_A Protein (thymidylate ki 99.0 4.7E-10 1.6E-14 91.1 7.1 26 176-203 130-155 (213)
95 2qt1_A Nicotinamide riboside k 99.0 1.6E-09 5.4E-14 86.4 10.1 29 53-81 17-45 (207)
96 3a00_A Guanylate kinase, GMP k 99.0 2.7E-10 9.2E-15 89.8 5.3 26 57-82 1-26 (186)
97 3vaa_A Shikimate kinase, SK; s 99.0 1.6E-10 5.6E-15 91.9 4.1 34 50-83 18-51 (199)
98 3lv8_A DTMP kinase, thymidylat 99.0 6E-10 2E-14 91.9 6.7 134 53-203 23-177 (236)
99 1ye8_A Protein THEP1, hypothet 99.0 3.2E-10 1.1E-14 89.4 4.8 51 59-119 2-52 (178)
100 2ehv_A Hypothetical protein PH 99.0 1.3E-10 4.4E-15 94.6 2.5 27 53-79 26-52 (251)
101 3tau_A Guanylate kinase, GMP k 99.0 4.5E-10 1.5E-14 90.2 5.2 29 54-82 5-33 (208)
102 1tf7_A KAIC; homohexamer, hexa 99.0 2E-10 6.7E-15 104.6 3.2 129 50-209 31-182 (525)
103 4a74_A DNA repair and recombin 98.9 2.1E-09 7.1E-14 86.3 6.9 29 53-81 21-49 (231)
104 2z0h_A DTMP kinase, thymidylat 98.9 2.5E-09 8.4E-14 84.0 7.2 26 176-203 119-144 (197)
105 1cke_A CK, MSSA, protein (cyti 98.9 2.6E-09 8.8E-14 85.9 7.1 26 57-82 5-30 (227)
106 3tmk_A Thymidylate kinase; pho 98.9 2.4E-10 8.1E-15 93.1 0.9 131 55-201 3-147 (216)
107 1svm_A Large T antigen; AAA+ f 98.9 1.1E-11 3.7E-16 108.9 -7.6 32 50-81 162-193 (377)
108 4aby_A DNA repair protein RECN 98.9 2.1E-09 7.3E-14 94.3 6.9 31 50-81 54-84 (415)
109 3uie_A Adenylyl-sulfate kinase 98.9 4.7E-09 1.6E-13 83.4 8.0 32 50-81 18-49 (200)
110 3hjn_A DTMP kinase, thymidylat 98.9 1.7E-09 6E-14 86.5 5.5 26 176-203 119-144 (197)
111 2vf7_A UVRA2, excinuclease ABC 98.9 1.2E-09 4.1E-14 104.5 5.2 61 149-209 709-790 (842)
112 1htw_A HI0065; nucleotide-bind 98.9 8.9E-10 3E-14 85.4 3.5 32 50-81 26-57 (158)
113 2r6f_A Excinuclease ABC subuni 98.9 2E-09 6.8E-14 103.7 6.0 60 150-209 825-905 (972)
114 3nwj_A ATSK2; P loop, shikimat 98.9 8.8E-10 3E-14 91.6 3.1 52 30-83 18-74 (250)
115 2eyu_A Twitching motility prot 98.8 5.4E-09 1.9E-13 87.2 7.7 28 54-81 22-49 (261)
116 2pt7_A CAG-ALFA; ATPase, prote 98.8 2.9E-09 1E-13 91.7 6.3 33 50-82 164-196 (330)
117 2ygr_A Uvrabc system protein A 98.8 4E-09 1.4E-13 101.9 7.7 60 150-209 843-923 (993)
118 1kag_A SKI, shikimate kinase I 98.8 1.9E-09 6.5E-14 83.1 4.4 28 56-83 3-30 (173)
119 4e22_A Cytidylate kinase; P-lo 98.8 7.8E-09 2.7E-13 85.4 8.3 28 53-80 23-50 (252)
120 1u0l_A Probable GTPase ENGC; p 98.8 1.1E-09 3.8E-14 93.0 3.1 30 53-82 165-194 (301)
121 2cdn_A Adenylate kinase; phosp 98.8 8.8E-09 3E-13 81.6 8.2 28 55-82 18-45 (201)
122 2bbw_A Adenylate kinase 4, AK4 98.8 3E-09 1E-13 87.3 5.0 27 55-81 25-54 (246)
123 3pih_A Uvrabc system protein A 98.8 1.2E-09 4.1E-14 105.3 2.9 61 149-209 784-865 (916)
124 2bdt_A BH3686; alpha-beta prot 98.8 1E-08 3.5E-13 80.4 7.6 24 57-80 2-25 (189)
125 2plr_A DTMP kinase, probable t 98.8 3.6E-08 1.2E-12 77.9 10.8 26 56-81 3-28 (213)
126 2pez_A Bifunctional 3'-phospho 98.8 1.3E-08 4.6E-13 79.1 8.1 27 55-81 3-29 (179)
127 3tlx_A Adenylate kinase 2; str 98.8 1.4E-08 4.7E-13 83.5 8.4 29 54-82 26-54 (243)
128 3dl0_A Adenylate kinase; phosp 98.8 2E-08 6.9E-13 80.3 8.9 23 177-201 105-127 (216)
129 1tq4_A IIGP1, interferon-induc 98.8 1.2E-10 4.2E-15 103.3 -4.6 33 50-82 42-94 (413)
130 1sq5_A Pantothenate kinase; P- 98.8 1E-10 3.4E-15 99.7 -5.1 29 54-82 77-105 (308)
131 3lw7_A Adenylate kinase relate 98.8 1.5E-08 5.3E-13 77.2 7.6 28 175-204 98-125 (179)
132 2yhs_A FTSY, cell division pro 98.8 6E-09 2.1E-13 94.2 5.9 71 50-124 286-361 (503)
133 2dpy_A FLII, flagellum-specifi 98.8 5.2E-09 1.8E-13 93.5 5.3 50 30-82 132-182 (438)
134 2c95_A Adenylate kinase 1; tra 98.8 1.5E-08 5.1E-13 79.4 7.1 29 55-83 7-35 (196)
135 3e70_C DPA, signal recognition 98.8 9.3E-09 3.2E-13 88.6 6.4 71 53-127 125-200 (328)
136 1lvg_A Guanylate kinase, GMP k 98.8 1.1E-08 3.8E-13 81.5 6.3 28 55-82 2-29 (198)
137 2rhm_A Putative kinase; P-loop 98.7 3.2E-08 1.1E-12 77.3 8.6 28 55-82 3-30 (193)
138 3fb4_A Adenylate kinase; psych 98.7 2.6E-08 8.9E-13 79.6 8.0 23 177-201 105-127 (216)
139 2bwj_A Adenylate kinase 5; pho 98.7 2.9E-08 9.8E-13 77.9 8.0 28 56-83 11-38 (199)
140 1aky_A Adenylate kinase; ATP:A 98.7 4.2E-08 1.4E-12 78.8 8.5 29 55-83 2-30 (220)
141 3cm0_A Adenylate kinase; ATP-b 98.7 2E-08 6.9E-13 78.2 6.1 28 55-82 2-29 (186)
142 2pbr_A DTMP kinase, thymidylat 98.7 6E-08 2.1E-12 75.6 8.6 24 178-203 122-145 (195)
143 2qag_B Septin-6, protein NEDD5 98.7 8.1E-09 2.8E-13 91.8 3.4 65 49-126 32-98 (427)
144 1qf9_A UMP/CMP kinase, protein 98.7 6.3E-08 2.1E-12 75.3 8.1 26 57-82 6-31 (194)
145 2v9p_A Replication protein E1; 98.7 6.7E-09 2.3E-13 88.6 2.7 49 30-81 102-150 (305)
146 3be4_A Adenylate kinase; malar 98.7 4.6E-08 1.6E-12 78.7 7.5 28 56-83 4-31 (217)
147 3jvv_A Twitching mobility prot 98.7 9.8E-09 3.3E-13 89.4 3.7 30 52-81 118-147 (356)
148 1ukz_A Uridylate kinase; trans 98.6 6.9E-08 2.4E-12 76.3 7.5 29 55-83 13-41 (203)
149 1jjv_A Dephospho-COA kinase; P 98.6 3.6E-08 1.2E-12 78.3 5.7 23 59-81 4-26 (206)
150 3tqc_A Pantothenate kinase; bi 98.6 4.8E-08 1.6E-12 83.9 6.8 26 57-82 92-117 (321)
151 2yvu_A Probable adenylyl-sulfa 98.6 8.9E-08 3.1E-12 74.8 7.7 28 54-81 10-37 (186)
152 2gza_A Type IV secretion syste 98.6 1.2E-08 4E-13 88.9 2.9 33 50-82 168-200 (361)
153 3iij_A Coilin-interacting nucl 98.6 4.8E-08 1.6E-12 75.9 6.0 28 55-82 9-36 (180)
154 1t9h_A YLOQ, probable GTPase E 98.6 3.4E-09 1.2E-13 90.6 -0.8 112 52-174 168-302 (307)
155 1zd8_A GTP:AMP phosphotransfer 98.6 1.8E-07 6.3E-12 75.5 9.1 29 55-83 5-33 (227)
156 1tev_A UMP-CMP kinase; ploop, 98.6 5.9E-08 2E-12 75.6 5.9 26 57-82 3-28 (196)
157 1zp6_A Hypothetical protein AT 98.6 3.1E-08 1.1E-12 77.4 4.0 28 54-81 6-33 (191)
158 1vht_A Dephospho-COA kinase; s 98.6 5.2E-07 1.8E-11 72.2 11.3 25 56-80 3-27 (218)
159 2xb4_A Adenylate kinase; ATP-b 98.6 2.1E-07 7.3E-12 75.2 9.1 24 177-202 104-127 (223)
160 2qor_A Guanylate kinase; phosp 98.6 1.2E-07 4.2E-12 75.4 7.4 28 54-81 9-36 (204)
161 1ak2_A Adenylate kinase isoenz 98.6 1.7E-07 5.9E-12 76.1 8.4 29 55-83 14-42 (233)
162 2qm8_A GTPase/ATPase; G protei 98.6 2.9E-08 1E-12 85.6 4.0 67 50-122 48-119 (337)
163 1pzn_A RAD51, DNA repair and r 98.6 4.2E-08 1.4E-12 85.0 4.8 32 50-81 124-155 (349)
164 1y63_A LMAJ004144AAA protein; 98.6 2E-07 6.8E-12 73.0 8.3 34 50-83 3-37 (184)
165 2i3b_A HCR-ntpase, human cance 98.6 2.6E-08 8.9E-13 79.2 3.2 51 57-119 1-54 (189)
166 2v54_A DTMP kinase, thymidylat 98.6 1.5E-07 5.2E-12 74.1 7.4 27 55-81 2-28 (204)
167 2yv5_A YJEQ protein; hydrolase 98.5 8E-09 2.7E-13 87.8 -0.1 29 53-82 161-189 (302)
168 3a4m_A L-seryl-tRNA(SEC) kinas 98.5 2.8E-07 9.4E-12 76.3 8.8 27 176-204 97-123 (260)
169 3umf_A Adenylate kinase; rossm 98.5 2.4E-07 8.3E-12 75.2 8.1 31 53-83 25-55 (217)
170 2qag_C Septin-7; cell cycle, c 98.5 4.7E-08 1.6E-12 86.8 4.0 44 30-81 12-55 (418)
171 1zak_A Adenylate kinase; ATP:A 98.5 1E-07 3.5E-12 76.6 5.2 27 56-82 4-30 (222)
172 2if2_A Dephospho-COA kinase; a 98.5 2.1E-07 7.2E-12 73.6 6.9 24 59-83 3-26 (204)
173 2wwf_A Thymidilate kinase, put 98.5 1.9E-07 6.5E-12 74.0 6.6 26 55-80 8-33 (212)
174 1ewq_A DNA mismatch repair pro 98.5 8.7E-08 3E-12 90.9 5.3 24 57-80 576-599 (765)
175 3euj_A Chromosome partition pr 98.5 5.5E-08 1.9E-12 87.8 3.6 41 50-91 23-68 (483)
176 1gtv_A TMK, thymidylate kinase 98.5 3.5E-08 1.2E-12 78.4 2.0 25 177-203 131-155 (214)
177 2rcn_A Probable GTPase ENGC; Y 98.5 3.3E-08 1.1E-12 86.1 2.0 65 55-128 213-279 (358)
178 1m7g_A Adenylylsulfate kinase; 98.5 2.6E-07 9E-12 73.8 6.8 30 52-81 20-49 (211)
179 3cr8_A Sulfate adenylyltranfer 98.5 7.9E-08 2.7E-12 88.1 4.1 29 53-81 365-393 (552)
180 1nn5_A Similar to deoxythymidy 98.5 6.3E-07 2.2E-11 71.0 8.9 26 55-80 7-32 (215)
181 1kgd_A CASK, peripheral plasma 98.5 8E-08 2.7E-12 75.1 3.4 28 55-82 3-30 (180)
182 1ly1_A Polynucleotide kinase; 98.4 1.2E-06 3.9E-11 67.4 9.6 25 58-82 3-28 (181)
183 3trf_A Shikimate kinase, SK; a 98.4 2.8E-07 9.4E-12 71.7 5.7 27 57-83 5-31 (185)
184 1lw7_A Transcriptional regulat 98.4 9.9E-08 3.4E-12 82.8 3.2 35 50-84 161-197 (365)
185 2ewv_A Twitching motility prot 98.4 2.5E-07 8.7E-12 80.8 5.4 29 53-81 132-160 (372)
186 3gmt_A Adenylate kinase; ssgci 98.4 7.4E-07 2.5E-11 73.0 7.9 26 175-202 107-132 (230)
187 2vli_A Antibiotic resistance p 98.4 2.7E-06 9.4E-11 65.6 10.7 29 55-83 3-31 (183)
188 2o8b_B DNA mismatch repair pro 98.4 3.9E-07 1.3E-11 89.0 6.4 23 57-80 789-811 (1022)
189 2obl_A ESCN; ATPase, hydrolase 98.4 1.5E-07 5.2E-12 81.6 3.2 31 52-82 66-96 (347)
190 3sr0_A Adenylate kinase; phosp 98.3 9.1E-07 3.1E-11 71.2 6.7 25 59-83 2-26 (206)
191 3szr_A Interferon-induced GTP- 98.3 1.8E-07 6.1E-12 86.7 2.7 61 60-127 48-114 (608)
192 1ex7_A Guanylate kinase; subst 98.3 1.3E-06 4.6E-11 69.2 7.3 22 59-80 3-24 (186)
193 1e4v_A Adenylate kinase; trans 98.3 5.5E-07 1.9E-11 72.0 5.0 24 177-202 101-124 (214)
194 2pt5_A Shikimate kinase, SK; a 98.3 4.2E-07 1.4E-11 69.5 4.0 24 59-82 2-25 (168)
195 1zuh_A Shikimate kinase; alpha 98.3 4.6E-07 1.6E-11 69.5 4.3 26 58-83 8-33 (168)
196 1pui_A ENGB, probable GTP-bind 98.3 2.5E-07 8.6E-12 73.0 2.3 30 52-81 21-50 (210)
197 2x8a_A Nuclear valosin-contain 98.3 2.5E-07 8.7E-12 77.4 2.3 31 50-82 39-69 (274)
198 3ney_A 55 kDa erythrocyte memb 98.3 4.2E-07 1.4E-11 72.8 3.5 29 54-82 16-44 (197)
199 1qhl_A Protein (cell division 98.3 2.1E-08 7.1E-13 82.1 -4.3 24 58-81 28-51 (227)
200 3zvl_A Bifunctional polynucleo 98.2 4.1E-06 1.4E-10 74.0 9.7 32 52-83 253-284 (416)
201 3kta_A Chromosome segregation 98.2 5.6E-07 1.9E-11 69.8 3.5 30 51-81 21-50 (182)
202 3ake_A Cytidylate kinase; CMP 98.2 4.9E-06 1.7E-10 65.4 8.9 25 59-83 4-28 (208)
203 2iyv_A Shikimate kinase, SK; t 98.2 1.2E-06 4.2E-11 68.0 5.2 25 59-83 4-28 (184)
204 1e6c_A Shikimate kinase; phosp 98.2 1E-06 3.6E-11 67.4 4.6 25 59-83 4-28 (173)
205 1cr0_A DNA primase/helicase; R 98.2 6.1E-07 2.1E-11 75.2 3.4 31 50-80 28-58 (296)
206 1in4_A RUVB, holliday junction 98.2 7.6E-07 2.6E-11 76.3 4.0 126 58-189 52-181 (334)
207 2f6r_A COA synthase, bifunctio 98.2 4.2E-06 1.4E-10 70.1 8.2 26 55-80 73-98 (281)
208 3ec2_A DNA replication protein 98.2 5.8E-07 2E-11 69.8 2.5 32 50-81 31-62 (180)
209 1uj2_A Uridine-cytidine kinase 98.2 9.6E-06 3.3E-10 66.5 9.6 29 55-83 20-48 (252)
210 4i1u_A Dephospho-COA kinase; s 98.2 2.1E-06 7.3E-11 69.3 5.4 23 178-202 131-153 (210)
211 1rz3_A Hypothetical protein rb 98.2 1.1E-06 3.9E-11 69.7 3.7 28 53-80 18-45 (201)
212 2p5t_B PEZT; postsegregational 98.1 9.9E-06 3.4E-10 66.5 8.9 29 54-82 29-57 (253)
213 2oap_1 GSPE-2, type II secreti 98.1 6E-07 2E-11 81.6 1.5 33 50-82 253-285 (511)
214 1ltq_A Polynucleotide kinase; 98.1 1.6E-05 5.4E-10 66.5 10.2 23 58-80 3-25 (301)
215 1p9r_A General secretion pathw 98.1 2E-06 7E-11 76.2 4.0 37 54-90 164-205 (418)
216 2w0m_A SSO2452; RECA, SSPF, un 98.1 1.5E-06 5E-11 69.3 2.8 28 53-80 19-46 (235)
217 1wb9_A DNA mismatch repair pro 98.0 3.2E-06 1.1E-10 80.6 4.1 30 50-80 601-630 (800)
218 3thx_B DNA mismatch repair pro 98.0 2.3E-06 7.9E-11 82.6 3.1 32 49-80 665-696 (918)
219 2f1r_A Molybdopterin-guanine d 98.0 1.4E-06 4.9E-11 68.0 1.3 25 58-82 3-27 (171)
220 2kjq_A DNAA-related protein; s 98.0 2.3E-06 7.9E-11 65.1 2.2 26 56-81 35-60 (149)
221 1n0w_A DNA repair protein RAD5 97.9 3.1E-06 1.1E-10 68.1 2.7 27 53-79 20-46 (243)
222 2cvh_A DNA repair and recombin 97.9 4.7E-06 1.6E-10 66.0 3.5 27 53-79 16-42 (220)
223 1ixz_A ATP-dependent metallopr 97.9 4.6E-06 1.6E-10 68.1 3.1 31 50-82 44-74 (254)
224 2qnr_A Septin-2, protein NEDD5 97.9 3.5E-06 1.2E-10 71.4 2.4 21 60-80 21-41 (301)
225 1odf_A YGR205W, hypothetical 3 97.9 6.2E-06 2.1E-10 69.6 3.9 29 54-82 28-56 (290)
226 1vma_A Cell division protein F 97.9 7.7E-06 2.6E-10 69.6 4.0 32 50-81 97-128 (306)
227 1qhx_A CPT, protein (chloramph 97.9 7.4E-06 2.5E-10 63.0 3.5 26 57-82 3-28 (178)
228 1x6v_B Bifunctional 3'-phospho 97.9 7.3E-05 2.5E-09 69.4 10.7 26 56-81 51-76 (630)
229 1iy2_A ATP-dependent metallopr 97.9 6.2E-06 2.1E-10 68.4 3.2 31 50-82 68-98 (278)
230 3thx_A DNA mismatch repair pro 97.9 5.9E-06 2E-10 80.0 3.4 31 49-79 654-684 (934)
231 2o5v_A DNA replication and rep 97.8 6.7E-06 2.3E-10 71.5 3.1 29 50-79 20-48 (359)
232 1nij_A Hypothetical protein YJ 97.8 1E-05 3.5E-10 68.9 3.7 25 57-81 4-28 (318)
233 1nlf_A Regulatory protein REPA 97.8 7.6E-06 2.6E-10 68.0 2.7 27 54-80 27-53 (279)
234 1kht_A Adenylate kinase; phosp 97.8 1.1E-05 3.7E-10 62.4 3.4 24 57-80 3-26 (192)
235 3qf7_A RAD50; ABC-ATPase, ATPa 97.8 9E-06 3.1E-10 70.7 3.2 45 165-209 277-342 (365)
236 1e69_A Chromosome segregation 97.8 8.2E-06 2.8E-10 69.5 2.6 29 51-80 19-47 (322)
237 1w1w_A Structural maintenance 97.8 1E-05 3.5E-10 71.5 3.3 27 54-80 23-49 (430)
238 1udx_A The GTP-binding protein 97.8 5.6E-06 1.9E-10 73.4 1.6 34 48-81 148-181 (416)
239 1zu4_A FTSY; GTPase, signal re 97.8 1.4E-05 4.9E-10 68.3 4.1 32 49-80 97-128 (320)
240 1uf9_A TT1252 protein; P-loop, 97.8 2E-05 6.8E-10 61.6 4.4 26 55-80 6-31 (203)
241 1q3t_A Cytidylate kinase; nucl 97.7 1.6E-05 5.3E-10 64.5 3.3 29 55-83 14-42 (236)
242 1oix_A RAS-related protein RAB 97.7 1.9E-05 6.6E-10 61.6 3.3 23 59-81 31-53 (191)
243 1tf7_A KAIC; homohexamer, hexa 97.7 1.5E-05 5.1E-10 72.3 2.9 31 50-80 274-304 (525)
244 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.1E-05 7.3E-10 59.7 3.2 22 58-79 24-45 (149)
245 2ze6_A Isopentenyl transferase 97.7 1.9E-05 6.4E-10 65.1 3.1 25 58-82 2-26 (253)
246 3r20_A Cytidylate kinase; stru 97.7 1.9E-05 6.5E-10 64.7 2.9 28 55-82 7-34 (233)
247 3ice_A Transcription terminati 97.7 3.5E-05 1.2E-09 67.8 4.6 52 29-80 133-197 (422)
248 2px0_A Flagellar biosynthesis 97.6 2.5E-05 8.5E-10 66.0 3.4 26 55-80 103-128 (296)
249 3czq_A Putative polyphosphate 97.6 0.00026 8.9E-09 60.1 9.6 119 55-201 84-211 (304)
250 2f9l_A RAB11B, member RAS onco 97.6 2.8E-05 9.7E-10 60.8 3.3 22 59-80 7-28 (199)
251 1via_A Shikimate kinase; struc 97.6 2.1E-05 7.3E-10 60.5 2.6 25 59-83 6-30 (175)
252 1nks_A Adenylate kinase; therm 97.6 2.9E-05 1E-09 59.9 3.3 23 59-81 3-25 (194)
253 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 3.2E-05 1.1E-09 68.0 3.6 27 53-79 16-42 (392)
254 1m8p_A Sulfate adenylyltransfe 97.6 5.8E-05 2E-09 69.4 5.5 27 55-81 394-420 (573)
255 2gj8_A MNME, tRNA modification 97.6 3.7E-05 1.3E-09 58.9 3.6 26 55-80 2-27 (172)
256 1ls1_A Signal recognition part 97.6 4.2E-05 1.4E-09 64.6 3.7 30 50-81 93-122 (295)
257 2p67_A LAO/AO transport system 97.5 4.8E-05 1.6E-09 65.3 3.9 31 50-80 49-79 (341)
258 1gvn_B Zeta; postsegregational 97.5 4.5E-05 1.5E-09 64.0 3.6 27 55-81 31-57 (287)
259 3lda_A DNA repair protein RAD5 97.5 3.6E-05 1.2E-09 67.8 2.7 27 52-78 173-199 (400)
260 1np6_A Molybdopterin-guanine d 97.5 5.2E-05 1.8E-09 59.3 3.1 23 58-80 7-29 (174)
261 1ega_A Protein (GTP-binding pr 97.5 5E-05 1.7E-09 64.1 3.0 26 55-80 6-31 (301)
262 2dr3_A UPF0273 protein PH0284; 97.5 5.7E-05 2E-09 60.6 3.0 28 52-79 18-45 (247)
263 2www_A Methylmalonic aciduria 97.4 7.2E-05 2.5E-09 64.5 3.7 26 55-80 72-97 (349)
264 2wji_A Ferrous iron transport 97.4 7.6E-05 2.6E-09 56.5 3.3 22 59-80 5-26 (165)
265 2grj_A Dephospho-COA kinase; T 97.4 5.9E-05 2E-09 59.8 2.6 27 57-83 12-38 (192)
266 2ga8_A Hypothetical 39.9 kDa p 97.4 5.5E-05 1.9E-09 65.6 2.6 32 50-81 15-48 (359)
267 2gks_A Bifunctional SAT/APS ki 97.4 0.0002 6.9E-09 65.4 6.0 26 55-80 370-395 (546)
268 3m6a_A ATP-dependent protease 97.4 8.9E-05 3E-09 67.6 3.4 32 50-82 102-133 (543)
269 2ius_A DNA translocase FTSK; n 97.4 0.00051 1.7E-08 62.3 8.2 30 50-79 160-189 (512)
270 2zej_A Dardarin, leucine-rich 97.3 9.1E-05 3.1E-09 57.1 2.9 22 59-80 4-25 (184)
271 3a8t_A Adenylate isopentenyltr 97.3 0.00017 5.7E-09 62.2 4.7 28 55-82 38-65 (339)
272 3k1j_A LON protease, ATP-depen 97.3 5.4E-05 1.8E-09 69.9 1.5 33 50-82 53-85 (604)
273 1a7j_A Phosphoribulokinase; tr 97.3 5.5E-05 1.9E-09 63.6 1.5 25 56-80 4-28 (290)
274 1lv7_A FTSH; alpha/beta domain 97.3 0.00011 3.8E-09 59.9 3.0 24 59-82 47-70 (257)
275 2wjg_A FEOB, ferrous iron tran 97.3 0.00014 4.7E-09 55.8 3.3 22 59-80 9-30 (188)
276 2h92_A Cytidylate kinase; ross 97.3 0.00013 4.5E-09 57.8 3.1 28 57-84 3-30 (219)
277 3qks_A DNA double-strand break 97.3 0.00015 5.1E-09 57.7 3.2 21 58-78 24-44 (203)
278 3qkt_A DNA double-strand break 97.2 0.00017 5.6E-09 61.8 3.6 45 165-209 246-311 (339)
279 1ypw_A Transitional endoplasmi 97.2 0.00018 6.1E-09 68.7 4.1 31 52-82 233-263 (806)
280 1j8m_F SRP54, signal recogniti 97.2 0.00015 5.1E-09 61.3 3.0 30 50-80 92-121 (297)
281 1xjc_A MOBB protein homolog; s 97.2 0.00017 5.9E-09 56.1 3.1 23 58-80 5-27 (169)
282 3d3q_A TRNA delta(2)-isopenten 97.2 0.0002 6.8E-09 61.8 3.5 25 58-82 8-32 (340)
283 4ad8_A DNA repair protein RECN 97.2 8.2E-05 2.8E-09 67.3 1.1 30 50-80 54-83 (517)
284 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00017 5.8E-09 65.3 3.1 31 50-82 59-89 (499)
285 1f6b_A SAR1; gtpases, N-termin 97.2 0.00017 5.8E-09 56.4 2.6 29 50-79 19-47 (198)
286 3exa_A TRNA delta(2)-isopenten 97.2 0.00031 1.1E-08 60.0 4.4 26 57-82 3-28 (322)
287 3crm_A TRNA delta(2)-isopenten 97.1 0.00025 8.5E-09 60.7 3.6 25 58-82 6-30 (323)
288 3hr8_A Protein RECA; alpha and 97.1 0.00019 6.5E-09 62.3 2.9 28 53-80 57-84 (356)
289 3cf0_A Transitional endoplasmi 97.1 0.00023 7.9E-09 59.7 3.4 30 53-82 45-74 (301)
290 3t34_A Dynamin-related protein 97.1 0.00037 1.3E-08 59.9 4.8 22 59-80 36-57 (360)
291 2qmh_A HPR kinase/phosphorylas 97.1 0.00038 1.3E-08 55.7 4.3 27 55-81 32-58 (205)
292 2ffh_A Protein (FFH); SRP54, s 97.1 0.00029 9.8E-09 62.5 3.7 29 50-80 93-121 (425)
293 1sxj_C Activator 1 40 kDa subu 97.1 0.00012 4E-09 62.4 1.1 31 50-80 37-69 (340)
294 3lxx_A GTPase IMAP family memb 97.1 0.00027 9.1E-09 57.0 3.0 22 59-80 31-52 (239)
295 3foz_A TRNA delta(2)-isopenten 97.0 0.00046 1.6E-08 58.8 4.1 26 57-82 10-35 (316)
296 3k53_A Ferrous iron transport 97.0 0.00032 1.1E-08 57.8 2.9 22 59-80 5-26 (271)
297 1z2a_A RAS-related protein RAB 97.0 0.00036 1.2E-08 52.0 2.9 22 59-80 7-28 (168)
298 2ce2_X GTPase HRAS; signaling 97.0 0.0004 1.4E-08 51.4 2.9 22 59-80 5-26 (166)
299 3bos_A Putative DNA replicatio 97.0 0.00047 1.6E-08 54.6 3.5 25 56-80 51-75 (242)
300 2ged_A SR-beta, signal recogni 96.9 0.0004 1.4E-08 53.4 2.9 22 59-80 50-71 (193)
301 3q72_A GTP-binding protein RAD 96.9 0.00038 1.3E-08 51.9 2.7 22 59-80 4-25 (166)
302 1jbk_A CLPB protein; beta barr 96.9 0.00051 1.7E-08 52.1 3.4 26 55-80 41-66 (195)
303 1m2o_B GTP-binding protein SAR 96.9 0.00047 1.6E-08 53.4 3.3 26 54-80 21-46 (190)
304 2vf7_A UVRA2, excinuclease ABC 96.9 0.00034 1.2E-08 67.0 2.9 58 153-210 362-439 (842)
305 1kao_A RAP2A; GTP-binding prot 96.9 0.00044 1.5E-08 51.3 2.9 22 59-80 5-26 (167)
306 2dyk_A GTP-binding protein; GT 96.9 0.00045 1.5E-08 51.2 2.9 22 59-80 3-24 (161)
307 1u8z_A RAS-related protein RAL 96.9 0.00045 1.6E-08 51.2 2.9 22 59-80 6-27 (168)
308 2nzj_A GTP-binding protein REM 96.9 0.00047 1.6E-08 51.8 3.0 22 59-80 6-27 (175)
309 2lkc_A Translation initiation 96.9 0.00065 2.2E-08 51.2 3.8 26 55-80 6-31 (178)
310 3auy_A DNA double-strand break 96.9 0.00044 1.5E-08 59.9 3.1 21 58-78 26-46 (371)
311 2erx_A GTP-binding protein DI- 96.9 0.00048 1.6E-08 51.4 3.0 22 59-80 5-26 (172)
312 1mky_A Probable GTP-binding pr 96.9 0.00044 1.5E-08 61.2 3.2 24 58-81 181-204 (439)
313 1sxj_E Activator 1 40 kDa subu 96.9 0.00036 1.2E-08 59.2 2.4 20 60-79 39-58 (354)
314 3q85_A GTP-binding protein REM 96.9 0.00052 1.8E-08 51.3 3.0 22 59-80 4-25 (169)
315 1g16_A RAS-related protein SEC 96.9 0.0005 1.7E-08 51.3 2.9 22 59-80 5-26 (170)
316 1ek0_A Protein (GTP-binding pr 96.9 0.00052 1.8E-08 51.1 2.9 22 59-80 5-26 (170)
317 2dy1_A Elongation factor G; tr 96.9 0.00049 1.7E-08 64.2 3.4 29 52-80 4-32 (665)
318 1z08_A RAS-related protein RAB 96.9 0.00051 1.8E-08 51.3 2.9 22 59-80 8-29 (170)
319 1c1y_A RAS-related protein RAP 96.9 0.00053 1.8E-08 51.0 2.9 22 59-80 5-26 (167)
320 3b9p_A CG5977-PA, isoform A; A 96.9 0.00059 2E-08 56.6 3.5 27 56-82 53-79 (297)
321 2zr9_A Protein RECA, recombina 96.9 0.00044 1.5E-08 59.6 2.7 27 53-79 57-83 (349)
322 1z0j_A RAB-22, RAS-related pro 96.9 0.00054 1.8E-08 51.1 2.9 22 59-80 8-29 (170)
323 1ky3_A GTP-binding protein YPT 96.9 0.00053 1.8E-08 51.8 2.9 22 59-80 10-31 (182)
324 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00051 1.8E-08 59.6 3.1 23 59-81 181-203 (364)
325 2fn4_A P23, RAS-related protei 96.9 0.00053 1.8E-08 51.7 2.9 22 59-80 11-32 (181)
326 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00055 1.9E-08 51.6 2.9 22 59-80 9-30 (177)
327 3fdi_A Uncharacterized protein 96.8 0.0006 2E-08 54.1 3.2 28 58-85 7-34 (201)
328 3tw8_B RAS-related protein RAB 96.8 0.00052 1.8E-08 51.8 2.7 22 59-80 11-32 (181)
329 1svi_A GTP-binding protein YSX 96.8 0.00058 2E-08 52.5 2.9 22 59-80 25-46 (195)
330 2w58_A DNAI, primosome compone 96.8 0.00067 2.3E-08 53.0 3.3 23 58-80 55-77 (202)
331 1fzq_A ADP-ribosylation factor 96.8 0.00055 1.9E-08 52.5 2.7 23 58-80 17-39 (181)
332 1v5w_A DMC1, meiotic recombina 96.8 0.00073 2.5E-08 57.9 3.8 31 50-80 115-145 (343)
333 3pqc_A Probable GTP-binding pr 96.8 0.00059 2E-08 52.2 2.9 22 59-80 25-46 (195)
334 3czp_A Putative polyphosphate 96.8 0.0052 1.8E-07 55.5 9.3 122 55-203 41-170 (500)
335 2qby_A CDC6 homolog 1, cell di 96.8 0.00058 2E-08 57.9 3.0 26 55-80 43-68 (386)
336 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00061 2.1E-08 59.9 3.2 28 53-80 18-45 (396)
337 2cxx_A Probable GTP-binding pr 96.8 0.00064 2.2E-08 51.8 2.9 22 59-80 3-24 (190)
338 1r2q_A RAS-related protein RAB 96.8 0.00067 2.3E-08 50.5 2.9 22 59-80 8-29 (170)
339 3clv_A RAB5 protein, putative; 96.8 0.00066 2.2E-08 52.0 2.9 22 59-80 9-30 (208)
340 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00069 2.3E-08 51.5 2.9 22 59-80 6-27 (189)
341 3bc1_A RAS-related protein RAB 96.8 0.00069 2.4E-08 51.6 2.9 22 59-80 13-34 (195)
342 3pih_A Uvrabc system protein A 96.8 0.00056 1.9E-08 66.0 2.8 58 152-209 446-523 (916)
343 4fcw_A Chaperone protein CLPB; 96.8 0.00085 2.9E-08 55.8 3.6 24 57-80 47-70 (311)
344 2hxs_A RAB-26, RAS-related pro 96.8 0.00078 2.7E-08 50.8 3.1 22 59-80 8-29 (178)
345 1upt_A ARL1, ADP-ribosylation 96.8 0.0011 3.7E-08 49.6 3.9 24 57-80 7-30 (171)
346 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00082 2.8E-08 58.3 3.6 25 56-80 34-58 (392)
347 2p65_A Hypothetical protein PF 96.7 0.00064 2.2E-08 51.5 2.6 26 55-80 41-66 (187)
348 2y8e_A RAB-protein 6, GH09086P 96.7 0.00073 2.5E-08 50.8 2.9 22 59-80 16-37 (179)
349 3kl4_A SRP54, signal recogniti 96.7 0.0007 2.4E-08 60.2 3.2 26 55-80 95-120 (433)
350 1r8s_A ADP-ribosylation factor 96.7 0.00076 2.6E-08 50.1 2.9 20 60-79 3-22 (164)
351 2oil_A CATX-8, RAS-related pro 96.7 0.00074 2.5E-08 52.0 2.9 22 59-80 27-48 (193)
352 2ce7_A Cell division protein F 96.7 0.00069 2.4E-08 60.9 3.1 29 52-82 46-74 (476)
353 3t1o_A Gliding protein MGLA; G 96.7 0.00076 2.6E-08 51.6 2.9 23 59-81 16-38 (198)
354 2ygr_A Uvrabc system protein A 96.7 0.00066 2.3E-08 65.9 3.0 57 153-209 504-580 (993)
355 2r6f_A Excinuclease ABC subuni 96.7 0.00065 2.2E-08 65.8 2.9 57 153-209 487-563 (972)
356 3con_A GTPase NRAS; structural 96.7 0.00078 2.7E-08 51.6 2.9 22 59-80 23-44 (190)
357 2a9k_A RAS-related protein RAL 96.7 0.00079 2.7E-08 51.0 2.9 22 59-80 20-41 (187)
358 3b1v_A Ferrous iron uptake tra 96.7 0.00082 2.8E-08 55.9 3.2 22 59-80 5-26 (272)
359 3h4m_A Proteasome-activating n 96.7 0.00094 3.2E-08 54.9 3.6 28 55-82 49-76 (285)
360 3tqf_A HPR(Ser) kinase; transf 96.7 0.0011 3.7E-08 52.0 3.6 26 55-80 14-39 (181)
361 2g6b_A RAS-related protein RAB 96.7 0.00084 2.9E-08 50.7 2.9 22 59-80 12-33 (180)
362 3eph_A TRNA isopentenyltransfe 96.7 0.00095 3.3E-08 58.8 3.6 24 58-81 3-26 (409)
363 1z0f_A RAB14, member RAS oncog 96.7 0.00086 2.9E-08 50.4 2.9 22 59-80 17-38 (179)
364 3lxw_A GTPase IMAP family memb 96.7 0.00085 2.9E-08 54.7 3.0 22 59-80 23-44 (247)
365 2bme_A RAB4A, RAS-related prot 96.7 0.00088 3E-08 51.0 2.9 22 59-80 12-33 (186)
366 3llm_A ATP-dependent RNA helic 96.7 0.00096 3.3E-08 53.7 3.3 24 55-78 74-97 (235)
367 1fnn_A CDC6P, cell division co 96.7 0.00095 3.2E-08 56.9 3.4 27 55-81 40-68 (389)
368 2efe_B Small GTP-binding prote 96.7 0.0009 3.1E-08 50.6 2.9 22 59-80 14-35 (181)
369 1moz_A ARL1, ADP-ribosylation 96.7 0.00086 2.9E-08 50.9 2.8 24 56-79 17-40 (183)
370 2wsm_A Hydrogenase expression/ 96.7 0.00096 3.3E-08 52.6 3.1 24 57-80 30-53 (221)
371 3ihw_A Centg3; RAS, centaurin, 96.7 0.00092 3.1E-08 51.5 2.9 21 59-79 22-42 (184)
372 2bov_A RAla, RAS-related prote 96.7 0.00092 3.2E-08 51.7 2.9 22 59-80 16-37 (206)
373 2qag_A Septin-2, protein NEDD5 96.6 0.00072 2.4E-08 58.5 2.5 21 60-80 40-60 (361)
374 3cbq_A GTP-binding protein REM 96.6 0.00076 2.6E-08 52.6 2.4 21 59-79 25-45 (195)
375 1nrj_B SR-beta, signal recogni 96.6 0.00093 3.2E-08 52.5 2.9 22 59-80 14-35 (218)
376 1m7b_A RND3/RHOE small GTP-bin 96.6 0.00094 3.2E-08 51.1 2.9 22 59-80 9-30 (184)
377 3czp_A Putative polyphosphate 96.6 0.0069 2.3E-07 54.7 8.8 120 55-202 298-426 (500)
378 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0013 4.4E-08 53.2 3.7 27 56-82 38-64 (262)
379 3t5d_A Septin-7; GTP-binding p 96.6 0.00088 3E-08 55.3 2.7 22 59-80 10-31 (274)
380 2r6a_A DNAB helicase, replicat 96.6 0.0011 3.8E-08 58.9 3.6 29 52-80 198-226 (454)
381 2gf0_A GTP-binding protein DI- 96.6 0.001 3.4E-08 51.2 2.9 22 59-80 10-31 (199)
382 1njg_A DNA polymerase III subu 96.6 0.0011 3.8E-08 51.9 3.2 23 58-80 46-68 (250)
383 2gf9_A RAS-related protein RAB 96.6 0.0011 3.6E-08 51.0 2.9 22 59-80 24-45 (189)
384 2fg5_A RAB-22B, RAS-related pr 96.6 0.001 3.5E-08 51.3 2.9 22 59-80 25-46 (192)
385 3tkl_A RAS-related protein RAB 96.6 0.0011 3.6E-08 50.9 2.9 22 59-80 18-39 (196)
386 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0011 3.7E-08 50.3 2.9 21 59-79 7-27 (186)
387 2xtp_A GTPase IMAP family memb 96.6 0.001 3.5E-08 54.1 3.0 23 58-80 23-45 (260)
388 1vg8_A RAS-related protein RAB 96.6 0.001 3.6E-08 51.5 2.9 22 59-80 10-31 (207)
389 3kkq_A RAS-related protein M-R 96.6 0.0011 3.7E-08 50.4 2.9 22 59-80 20-41 (183)
390 3iby_A Ferrous iron transport 96.6 0.0012 4E-08 54.4 3.2 22 59-80 3-24 (256)
391 1g8f_A Sulfate adenylyltransfe 96.6 0.001 3.4E-08 60.4 3.0 28 55-82 393-420 (511)
392 3t5g_A GTP-binding protein RHE 96.6 0.0012 4E-08 50.1 2.9 21 59-79 8-28 (181)
393 3oes_A GTPase rhebl1; small GT 96.6 0.0012 3.9E-08 51.4 2.9 23 58-80 25-47 (201)
394 1zbd_A Rabphilin-3A; G protein 96.6 0.0012 4.2E-08 51.1 3.0 22 59-80 10-31 (203)
395 3iev_A GTP-binding protein ERA 96.6 0.0012 4.2E-08 55.6 3.3 22 59-80 12-33 (308)
396 1z06_A RAS-related protein RAB 96.6 0.0012 4E-08 50.7 2.9 22 59-80 22-43 (189)
397 1ko7_A HPR kinase/phosphatase; 96.6 0.0015 5.2E-08 55.6 3.8 25 56-80 143-167 (314)
398 2z43_A DNA repair and recombin 96.5 0.001 3.5E-08 56.5 2.7 29 52-80 102-130 (324)
399 1wf3_A GTP-binding protein; GT 96.5 0.0013 4.4E-08 55.5 3.3 22 59-80 9-30 (301)
400 1l8q_A Chromosomal replication 96.5 0.00098 3.4E-08 56.1 2.6 24 57-80 37-60 (324)
401 3dz8_A RAS-related protein RAB 96.5 0.0012 4.1E-08 50.8 2.9 22 59-80 25-46 (191)
402 2il1_A RAB12; G-protein, GDP, 96.5 0.0012 4E-08 51.1 2.7 22 59-80 28-49 (192)
403 2h57_A ADP-ribosylation factor 96.5 0.001 3.5E-08 51.1 2.4 23 58-80 22-44 (190)
404 2ew1_A RAS-related protein RAB 96.5 0.0013 4.3E-08 51.7 2.9 22 59-80 28-49 (201)
405 2a5j_A RAS-related protein RAB 96.5 0.0013 4.5E-08 50.6 2.9 22 59-80 23-44 (191)
406 3hdt_A Putative kinase; struct 96.5 0.0015 5E-08 52.9 3.3 29 57-85 14-42 (223)
407 2o52_A RAS-related protein RAB 96.5 0.0013 4.6E-08 51.2 3.0 22 59-80 27-48 (200)
408 2e87_A Hypothetical protein PH 96.5 0.0014 4.6E-08 56.4 3.3 26 56-81 166-191 (357)
409 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0013 4.5E-08 51.2 2.9 22 59-80 10-31 (206)
410 1ksh_A ARF-like protein 2; sma 96.5 0.0018 6.1E-08 49.4 3.6 23 58-80 19-41 (186)
411 3bwd_D RAC-like GTP-binding pr 96.5 0.0017 5.8E-08 49.1 3.5 22 59-80 10-31 (182)
412 4dhe_A Probable GTP-binding pr 96.5 0.0011 3.8E-08 52.1 2.5 22 59-80 31-52 (223)
413 2atv_A RERG, RAS-like estrogen 96.5 0.0014 4.7E-08 50.7 2.9 23 58-80 29-51 (196)
414 1zd9_A ADP-ribosylation factor 96.5 0.0014 4.8E-08 50.4 2.9 23 58-80 23-45 (188)
415 2cjw_A GTP-binding protein GEM 96.5 0.0014 4.8E-08 50.9 2.9 21 59-79 8-28 (192)
416 2qu8_A Putative nucleolar GTP- 96.5 0.0014 4.7E-08 52.3 2.9 23 58-80 30-52 (228)
417 4bas_A ADP-ribosylation factor 96.5 0.0013 4.6E-08 50.5 2.8 23 58-80 18-40 (199)
418 1x3s_A RAS-related protein RAB 96.5 0.0014 4.9E-08 50.1 2.9 22 59-80 17-38 (195)
419 2h17_A ADP-ribosylation factor 96.5 0.0013 4.4E-08 50.2 2.6 23 58-80 22-44 (181)
420 3reg_A RHO-like small GTPase; 96.5 0.0015 5E-08 50.4 2.9 22 59-80 25-46 (194)
421 3cph_A RAS-related protein SEC 96.5 0.0015 5E-08 50.9 2.9 23 58-80 21-43 (213)
422 3a1s_A Iron(II) transport prot 96.4 0.0015 5.1E-08 53.7 3.0 22 59-80 7-28 (258)
423 2fv8_A H6, RHO-related GTP-bin 96.4 0.0015 5.1E-08 51.1 2.9 22 59-80 27-48 (207)
424 2iwr_A Centaurin gamma 1; ANK 96.4 0.0011 3.9E-08 50.0 2.1 22 59-80 9-30 (178)
425 2r62_A Cell division protease 96.4 0.00084 2.9E-08 54.8 1.4 21 60-80 47-67 (268)
426 1gwn_A RHO-related GTP-binding 96.4 0.0016 5.3E-08 51.3 2.9 22 59-80 30-51 (205)
427 3n70_A Transport activator; si 96.4 0.0018 6E-08 48.3 3.0 25 57-81 24-48 (145)
428 3i8s_A Ferrous iron transport 96.4 0.0017 5.8E-08 53.8 3.2 22 59-80 5-26 (274)
429 3t15_A Ribulose bisphosphate c 96.4 0.0019 6.6E-08 53.9 3.6 28 55-82 34-61 (293)
430 3c5c_A RAS-like protein 12; GD 96.4 0.0016 5.6E-08 50.1 2.9 22 59-80 23-44 (187)
431 1zj6_A ADP-ribosylation factor 96.4 0.0023 8E-08 48.9 3.8 23 58-80 17-39 (187)
432 2b6h_A ADP-ribosylation factor 96.4 0.0023 8E-08 49.5 3.8 26 55-80 27-52 (192)
433 2f7s_A C25KG, RAS-related prot 96.4 0.0017 5.7E-08 51.0 3.0 22 59-80 27-48 (217)
434 2dby_A GTP-binding protein; GD 96.4 0.0015 5E-08 56.9 2.8 21 60-80 4-24 (368)
435 2q3h_A RAS homolog gene family 96.4 0.0017 5.9E-08 50.2 3.0 24 57-80 20-43 (201)
436 2p5s_A RAS and EF-hand domain 96.4 0.0021 7.2E-08 49.8 3.5 24 57-80 28-51 (199)
437 1jwy_B Dynamin A GTPase domain 96.4 0.0017 5.9E-08 54.2 3.2 22 59-80 26-47 (315)
438 2hf9_A Probable hydrogenase ni 96.4 0.0023 7.7E-08 50.6 3.7 24 57-80 38-61 (226)
439 2fh5_B SR-beta, signal recogni 96.4 0.0017 5.8E-08 50.8 2.9 22 59-80 9-30 (214)
440 2j1l_A RHO-related GTP-binding 96.4 0.0017 6E-08 51.1 3.0 22 59-80 36-57 (214)
441 3llu_A RAS-related GTP-binding 96.4 0.0018 6.3E-08 50.1 3.0 22 59-80 22-43 (196)
442 2gco_A H9, RHO-related GTP-bin 96.3 0.0019 6.3E-08 50.3 2.9 22 59-80 27-48 (201)
443 3bh0_A DNAB-like replicative h 96.3 0.0023 7.9E-08 54.1 3.6 28 52-79 63-90 (315)
444 2fu5_C RAS-related protein RAB 96.3 0.0011 3.9E-08 50.3 1.5 22 59-80 10-31 (183)
445 2i1q_A DNA repair and recombin 96.3 0.0019 6.5E-08 54.5 3.0 27 53-79 94-120 (322)
446 2atx_A Small GTP binding prote 96.3 0.002 6.8E-08 49.5 2.9 22 59-80 20-41 (194)
447 2chg_A Replication factor C sm 96.3 0.0021 7.2E-08 49.7 2.9 22 59-80 40-61 (226)
448 3syl_A Protein CBBX; photosynt 96.3 0.0025 8.6E-08 52.9 3.6 26 55-80 65-90 (309)
449 2orw_A Thymidine kinase; TMTK, 96.3 0.0028 9.4E-08 49.5 3.5 21 57-77 3-23 (184)
450 2zts_A Putative uncharacterize 96.3 0.0021 7.1E-08 51.3 2.8 25 54-78 27-51 (251)
451 2aka_B Dynamin-1; fusion prote 96.3 0.0021 7.1E-08 53.1 2.9 22 59-80 28-49 (299)
452 1h65_A Chloroplast outer envel 96.2 0.0024 8.3E-08 52.4 3.2 22 59-80 41-62 (270)
453 2v1u_A Cell division control p 96.2 0.0022 7.5E-08 54.4 2.9 27 55-81 42-68 (387)
454 1sxj_D Activator 1 41 kDa subu 96.2 0.002 6.8E-08 54.3 2.6 22 59-80 60-81 (353)
455 3def_A T7I23.11 protein; chlor 96.2 0.0024 8.1E-08 52.4 3.0 22 59-80 38-59 (262)
456 2hup_A RAS-related protein RAB 96.2 0.0025 8.5E-08 49.7 2.9 22 59-80 31-52 (201)
457 3hws_A ATP-dependent CLP prote 96.2 0.0026 8.9E-08 54.5 3.3 26 57-82 51-76 (363)
458 1d2n_A N-ethylmaleimide-sensit 96.2 0.0027 9.4E-08 52.0 3.2 28 55-82 62-89 (272)
459 2z4s_A Chromosomal replication 96.2 0.0023 8E-08 56.7 2.9 24 57-80 130-153 (440)
460 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0032 1.1E-07 53.4 3.6 27 55-81 43-69 (322)
461 4gzl_A RAS-related C3 botulinu 96.2 0.0027 9.1E-08 49.6 2.9 23 57-79 30-52 (204)
462 1jal_A YCHF protein; nucleotid 96.1 0.0028 9.7E-08 55.0 3.3 23 58-80 3-25 (363)
463 3cpj_B GTP-binding protein YPT 96.1 0.0027 9.2E-08 50.3 2.9 22 59-80 15-36 (223)
464 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0025 8.5E-08 57.2 2.8 29 52-80 146-174 (473)
465 2g3y_A GTP-binding protein GEM 96.1 0.0029 1E-07 50.4 3.0 22 59-80 39-60 (211)
466 1ypw_A Transitional endoplasmi 96.1 0.0014 4.8E-08 62.5 1.3 32 51-82 505-536 (806)
467 4djt_A GTP-binding nuclear pro 96.1 0.0012 4.3E-08 51.7 0.8 21 59-79 13-33 (218)
468 2yc2_C IFT27, small RAB-relate 96.1 0.0012 4E-08 51.1 0.5 22 59-80 22-43 (208)
469 2j0v_A RAC-like GTP-binding pr 96.1 0.003 1E-07 49.3 2.9 22 59-80 11-32 (212)
470 3q3j_B RHO-related GTP-binding 96.1 0.003 1E-07 49.8 2.9 22 59-80 29-50 (214)
471 2v3c_C SRP54, signal recogniti 96.1 0.0023 7.7E-08 56.8 2.4 25 56-80 98-122 (432)
472 1ofh_A ATP-dependent HSL prote 96.1 0.0031 1.1E-07 52.0 3.0 25 58-82 51-75 (310)
473 2x77_A ADP-ribosylation factor 96.0 0.0031 1.1E-07 48.2 2.8 22 58-79 23-44 (189)
474 2axn_A 6-phosphofructo-2-kinas 96.0 0.0039 1.3E-07 56.5 3.8 27 55-81 33-59 (520)
475 3p32_A Probable GTPase RV1496/ 96.0 0.0043 1.5E-07 53.3 3.7 26 55-80 77-102 (355)
476 3dm5_A SRP54, signal recogniti 96.0 0.0041 1.4E-07 55.3 3.7 25 56-80 99-123 (443)
477 1bif_A 6-phosphofructo-2-kinas 96.0 0.004 1.4E-07 55.5 3.6 26 55-80 37-62 (469)
478 3uk6_A RUVB-like 2; hexameric 96.0 0.0037 1.3E-07 53.1 3.3 26 56-81 69-94 (368)
479 3co5_A Putative two-component 96.0 0.0021 7.1E-08 47.8 1.4 24 59-82 29-52 (143)
480 3eie_A Vacuolar protein sortin 96.0 0.0043 1.5E-07 52.3 3.6 27 56-82 50-76 (322)
481 2qby_B CDC6 homolog 3, cell di 96.0 0.0044 1.5E-07 52.8 3.6 26 55-80 43-68 (384)
482 3cnl_A YLQF, putative uncharac 96.0 0.0041 1.4E-07 51.4 3.2 23 58-80 100-122 (262)
483 3d8b_A Fidgetin-like protein 1 96.0 0.0043 1.5E-07 53.3 3.5 28 55-82 115-142 (357)
484 4dcu_A GTP-binding protein ENG 95.9 0.0034 1.2E-07 55.7 2.9 22 59-80 25-46 (456)
485 2b8t_A Thymidine kinase; deoxy 95.9 0.0058 2E-07 49.4 3.7 25 55-79 10-34 (223)
486 1g41_A Heat shock protein HSLU 95.9 0.0043 1.5E-07 55.3 3.1 26 59-84 52-77 (444)
487 2q6t_A DNAB replication FORK h 95.8 0.0054 1.9E-07 54.2 3.7 27 53-79 196-222 (444)
488 1u94_A RECA protein, recombina 95.8 0.0041 1.4E-07 53.8 2.8 26 54-79 60-85 (356)
489 4b4t_K 26S protease regulatory 95.8 0.0048 1.6E-07 54.7 3.2 30 55-84 204-233 (428)
490 4a1f_A DNAB helicase, replicat 95.8 0.0061 2.1E-07 52.4 3.6 27 54-80 43-69 (338)
491 3pfi_A Holliday junction ATP-d 95.8 0.0047 1.6E-07 52.0 2.9 24 59-82 57-80 (338)
492 1xx6_A Thymidine kinase; NESG, 95.8 0.0074 2.5E-07 47.6 3.8 25 55-79 6-30 (191)
493 2qgz_A Helicase loader, putati 95.7 0.006 2E-07 51.5 3.5 24 57-80 152-175 (308)
494 2bjv_A PSP operon transcriptio 95.7 0.0057 1.9E-07 49.8 3.2 24 58-81 30-53 (265)
495 1puj_A YLQF, conserved hypothe 95.7 0.0071 2.4E-07 50.4 3.9 27 55-81 118-144 (282)
496 1um8_A ATP-dependent CLP prote 95.7 0.005 1.7E-07 52.9 3.0 25 58-82 73-97 (376)
497 4b4t_L 26S protease subunit RP 95.7 0.0053 1.8E-07 54.6 3.2 30 55-84 213-242 (437)
498 1c9k_A COBU, adenosylcobinamid 95.7 0.0049 1.7E-07 48.3 2.6 21 60-80 2-22 (180)
499 1knx_A Probable HPR(Ser) kinas 95.7 0.007 2.4E-07 51.5 3.7 26 56-81 146-171 (312)
500 4b4t_M 26S protease regulatory 95.7 0.0055 1.9E-07 54.4 3.2 30 55-84 213-242 (434)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.86 E-value=8.4e-23 Score=179.65 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=116.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....++++ |+++++||+++|+||||||||||+|+|+|+.. +.+.|+++... .
T Consensus 4 l~~~~l~~~yg~~~~L~~v--sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~---------~- 71 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDI--NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT---------P- 71 (381)
T ss_dssp EEEEEEEEEETTEEEEEEE--EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---------C-
T ss_pred EEEEeEEEEECCEEEEeee--EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC---------C-
Confidence 3445666667655555554 55569999999999999999999999999864 33344443211 0
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhh-------
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTM------- 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~------- 175 (210)
...+.+||+||++.+++.+++..+.... ......+..+.+.++.++++.+|+. ....+.++|++++++
T Consensus 72 --~~~r~ig~VfQ~~~l~p~ltV~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 72 --PAERGVGMVFQSYALYPHLSVAENMSFG-LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp --GGGSCEEEECTTCCCCTTSCHHHHHTHH-HHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred --HHHCCEEEEecCCcCCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHH
Confidence 1226799999999988877766665321 1222334556667889999999997 344567899998764
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|++++++||+. |+. ..++++.++ |.++++|.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vT 191 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 57999999999987 443 456677554 88888874
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.86 E-value=9.8e-23 Score=178.30 Aligned_cols=170 Identities=10% Similarity=0.063 Sum_probs=115.7
Q ss_pred cCCCccccccCCCC----CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcc
Q psy6983 30 VPFCFLCASQNHNS----TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHN 100 (210)
Q Consensus 30 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~ 100 (210)
+.+.+++++|+... ++++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... +
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~--vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~------~ 96 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNN--VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL------S 96 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSC------C
T ss_pred EEEEeEEEEeCCCCCCeEEEEe--eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC------C
Confidence 34566777775422 2333 667779999999999999999999999999864 34444444321 1
Q ss_pred hHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh----
Q psy6983 101 LLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT---- 174 (210)
Q Consensus 101 ~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~---- 174 (210)
.......++++||+||++.+++.+++..+...+ ......+..+.+.++.++|+.+|+.+ ...+.++|+++++
T Consensus 97 -~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~-~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 97 -ESELTKARRQIGMIFQHFNLLSSRTVFGNVALP-LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp -HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred -HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 111222336899999999877655544443211 12223345566678899999999983 3446789998866
Q ss_pred ---hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 175 ---MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 ---~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++..|++++++||+. ||. ..++++.++ |.++++|.
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vT 221 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 554 356677654 89998875
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.86 E-value=3.1e-22 Score=174.82 Aligned_cols=168 Identities=14% Similarity=0.035 Sum_probs=113.3
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++|+....++++ |+++++||+++|+||||||||||+|+|+|+.. +.+.|+++..... + ..
T Consensus 6 ~i~~ls~~y~~~~~L~~v--sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~----~-~~-- 76 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDI--SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT----N-LP-- 76 (359)
T ss_dssp EEEEEEEEETTEEEEEEE--EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC----B-CC--
T ss_pred EEEeEEEEECCEEEEEee--EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc----c-cc--
Confidence 345666667655555554 55669999999999999999999999999864 4444444321000 0 00
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~ 176 (210)
..++++||+||++.+++.+++..+...+ ......+..+.+.++.++++.+|+.+ ...+.++|+++++ ++
T Consensus 77 -~~~r~ig~vfQ~~~l~p~ltV~eni~~~-l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 77 -VRERRLGYLVQEGVLFPHLTVYRNIAYG-LGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA 154 (359)
T ss_dssp -GGGSCCEEECTTCCCCTTSCHHHHHHTT-STTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred -hhhCCEEEEeCCCcCCCCCCHHHHHHHH-HHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 2236799999999888776655554322 11222344555677899999999983 4456789999866 46
Q ss_pred cCccEEEEecCCC--CHHH------HHHhh-hhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPIK------MMERS-IHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe~------~l~Ri-~~R~r~~~~~~ 209 (210)
..|++++++||+. |+.. .+.++ ++.|.++++|.
T Consensus 155 ~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vT 196 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 8999999999987 4432 23343 45688888874
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=1.5e-21 Score=164.97 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=109.5
Q ss_pred cCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcch---HHHH
Q psy6983 30 VPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL---LALM 105 (210)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~---l~~~ 105 (210)
+.+.+++++|+... .+++ +|+++++|++++|+||||||||||+|+|+|+..+. .|.+.++|.++ ....
T Consensus 8 l~i~~ls~~y~~~~~~L~~--isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~------~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKG--INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS------SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEECTTSCEEEEE--EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEECCCCeEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC------CeEEEECCEECCcccccH
Confidence 34566777775432 4444 55666999999999999999999999999986431 12222222221 1111
Q ss_pred HhcccceeeeehhhH--hh--hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-----
Q psy6983 106 YENASRWSLTFQTMV--QK--TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT----- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~--l~--~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~----- 174 (210)
...++.+||+||++. ++ +..+.+.... .....+..+..+++.++++.+|+.+ ...+.++|+++++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGA----VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHH----HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 122367999999863 22 3333333221 1122344555677889999999973 4456789998866
Q ss_pred --hccCccEEEEecCCC--CHHH------HHHhhh-hcCceeEEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPIK------MMERSI-HSARFVLVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~-~R~r~~~~~~ 209 (210)
++..|+++|++||+. ||.. .++++. ++|.+++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vt 201 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIAT 201 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 467999999999998 5543 456665 5689998875
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.85 E-value=4.1e-22 Score=164.78 Aligned_cols=154 Identities=15% Similarity=0.091 Sum_probs=101.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++.+|++++|+||||||||||+++|+|+.. +.+.|+++..+ +........++.++|+||++.+++.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~------~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL------DDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC------CHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccC------CHHHHHHHhhccEEEEecCCccCCC
Confidence 566779999999999999999999999999864 33334433221 1111111112469999999877654
Q ss_pred HHHHHcCCCCcc--cccccchhhhHHHHHHHHHHcchhh---HHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 125 LEVHLDQPITPI--KMMERSIHSARWELTQCQICSQALM---YENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 125 ~~~~~~~~~~~~--~~~~~s~~e~~~~~~~~L~~~gl~~---~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+++..+...+.. .....+..+..+.+.++++.+|+.+ ...+.++|+++++ ++..|+++|++||+. |
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 443333211000 0011234455567888999999863 3356789998865 467999999999998 4
Q ss_pred HH------HHHHhhhhc-CceeEEee
Q psy6983 191 PI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
|+ ..++++.++ |++++++.
T Consensus 178 ~~~~~~i~~~l~~l~~~~g~tvi~vt 203 (235)
T 3tif_A 178 SKTGEKIMQLLKKLNEEDGKTVVVVT 203 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 43 345666554 89998874
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=2.3e-22 Score=168.79 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=109.5
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccC----cc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKG----HN 100 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~----~~ 100 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++........ .+
T Consensus 7 l~i~~l~~~y~~~~vl~~--vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKG--VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp EEEEEEEEEETTEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEeeEEEEECCEEEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 345666666754434444 566679999999999999999999999999864 3333333220000000 00
Q ss_pred hHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH---HhhhhHHHHHHh---
Q psy6983 101 LLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY---ENASRWSLTFQT--- 174 (210)
Q Consensus 101 ~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~---~~~~~~s~~~~~--- 174 (210)
.......++.++|+||++.+++.+++..+...........+..+...++.++++.+|+.++ ..+.++|+++++
T Consensus 85 -~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 85 -KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp -HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred -hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 0111112357999999986655443333321100011122233445678889999998744 335689998765
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. ||. ..++++.++|+.++++.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vt 210 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 210 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467999999999987 554 45667766788888874
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=3e-22 Score=167.70 Aligned_cols=173 Identities=13% Similarity=-0.013 Sum_probs=110.4
Q ss_pred cccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh
Q psy6983 28 LSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
..+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+..+. .|.+.++|.++......
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~--vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~------~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKG--ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS------SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEECCEEEEEe--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC------ceEEEECCEECCccHHH
Confidence 34556777777765444444 56667999999999999999999999999986432 12222222221100111
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~ 178 (210)
.++.++|+||++.+++.++...+.... ......+..+....+.++++.+|+.+ ...+.++|+++++ ++..
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFV-AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHH-HHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 236799999998665443333222110 11112223333456788999999873 3446688988765 4679
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|++++++||+. ||+ ..++++.++|+.++++.
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 99999999987 443 45666666788888874
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=1.8e-22 Score=169.67 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=109.4
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++. . ...+ ...
T Consensus 25 l~i~~l~~~y~~~~vL~~--vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~---~~~~-~~~ 97 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKG--INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-A---KDTN-LNK 97 (263)
T ss_dssp EEEEEEEEEETTEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-S---TTCC-HHH
T ss_pred EEEEeEEEEECCEEEEEe--eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-C---cccc-HHH
Confidence 445677777765444444 566679999999999999999999999999864 333333321 0 0001 111
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
.+++++|+||++.+++.+++..+...........+..+..+++.++++.+|+.+ ...+.++|+++++ +
T Consensus 98 ---~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 98 ---VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp ---HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred ---HhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 125699999998665543333322110001112223344456888999999973 3446789998765 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|+++|++||+. ||. ..++++.++|+.++++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vt 216 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 67999999999987 443 45666766788888874
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=5.8e-22 Score=165.86 Aligned_cols=169 Identities=13% Similarity=-0.043 Sum_probs=108.9
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+..+ .+.|+++.. .+...
T Consensus 8 l~i~~l~~~y~~~~vl~~--vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~------~~~~~- 78 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDG--VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN------KEPAE- 78 (257)
T ss_dssp EEEEEEEEEETTEEEEEE--ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT------CCHHH-
T ss_pred EEEeeeEEEECCEeeEee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC------CCHHH-
Confidence 345666666755434444 5566799999999999999999999999998643 233333221 01011
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCccc-ccc-----------cchhhhHHHHHHHHHHcchhh--HHhhhhHHH
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIK-MME-----------RSIHSARWELTQCQICSQALM--YENASRWSL 170 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~-~~~-----------~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~ 170 (210)
..++.++|+||++.+++.+++..+....... ... ....+.+..+.++++.+|+.+ ...+.++|+
T Consensus 79 --~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 79 --LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156 (257)
T ss_dssp --HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred --HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH
Confidence 1125699999998776544433332111000 001 122334456788999999873 444678999
Q ss_pred HHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++++ ++..|+++|++||+. ||+ ..++++.++|+.++++.
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 210 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 8866 457999999999987 544 45667766788988874
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.84 E-value=1.1e-21 Score=171.20 Aligned_cols=165 Identities=11% Similarity=0.006 Sum_probs=111.5
Q ss_pred cCCCcccccc-CCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 30 VPFCFLCASQ-NHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 30 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
+.+.+++++| +....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... .
T Consensus 15 l~~~~l~~~y~g~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------~ 83 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRG--VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL---------P 83 (355)
T ss_dssp EEEEEEEECCTTSTTCEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC---------C
T ss_pred EEEEEEEEEEcCCCEEEee--eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC---------C
Confidence 3356666666 54444444 456669999999999999999999999999864 33333333210 0
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT------- 174 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~------- 174 (210)
..+++++|+||++.+++.+++..+.... ......+..+.++++.++++.+|+.+ ...+.++|+++++
T Consensus 84 ---~~~r~ig~v~Q~~~l~~~ltv~eni~~~-l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 84 ---PQKRNVGLVFQNYALFQHMTVYDNVSFG-LREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp ---GGGSSEEEECGGGCCCTTSCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ---hhhCcEEEEecCcccCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1236799999999887766555444211 11112234455567889999999973 4456789998865
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..++++.++ |.+++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 203 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 468999999999987 443 345666544 88888764
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.84 E-value=1.1e-21 Score=171.64 Aligned_cols=163 Identities=13% Similarity=-0.026 Sum_probs=109.6
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... .
T Consensus 6 ~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------~--- 71 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDG--VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI---------P--- 71 (359)
T ss_dssp EEEEEEEETTEEEEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---------C---
T ss_pred EEEEEEEECCEEEEee--eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC---------C---
Confidence 4555566654333444 556679999999999999999999999999864 33333333211 0
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hcc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~ 177 (210)
...++++|+||++.+++++++..+.... ......+..+.+.++.++++.+|+.+ ...+.++|+++++ ++.
T Consensus 72 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 72 PKYREVGMVFQNYALYPHMTVFENIAFP-LRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GGGTTEEEECSSCCCCTTSCHHHHHHGG-GSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1236799999999888766655544221 11112233444467889999999973 4456789998866 468
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
.|++++++||+. |+. ..++++.+ .|.+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999999999987 443 34556654 488888764
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.84 E-value=9.8e-22 Score=161.36 Aligned_cols=168 Identities=13% Similarity=-0.016 Sum_probs=107.4
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+..+ .+.|+++... +. ....
T Consensus 7 ~~~l~~~y~~~~~l~~--vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~-~~~~ 77 (224)
T 2pcj_A 7 AENIKKVIRGYEILKG--ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT------NE-KELS 77 (224)
T ss_dssp EEEEEEEETTEEEEEE--EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSS------CH-HHHH
T ss_pred EEeEEEEECCEeeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCC------CH-HHHH
Confidence 4556666654333333 5666799999999999999999999999998643 3333332210 10 1111
Q ss_pred hc-ccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hc
Q psy6983 107 EN-ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MV 176 (210)
Q Consensus 107 ~~-~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~ 176 (210)
.. ++.++|+||++.+++.+++..+.... ......+..+..+.+.++++.+|+. ....+.++|+++++ ++
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 78 LLRNRKLGFVFQFHYLIPELTALENVIVP-MLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEecCcccCCCCCHHHHHHhH-HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 11 25699999998665543333332110 1111122234445688899999987 34456789998865 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
..|++++++||+. ||+ ..++++.++|+.++++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vt 197 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 7999999999987 554 45667766788888874
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.84 E-value=4.7e-22 Score=173.55 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=110.2
Q ss_pred CCccccccCCCC--CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 32 FCFLCASQNHNS--TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 32 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+++++|+... .+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++...... + +.
T Consensus 6 i~~l~~~y~~~~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~---~-~~- 78 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDN--VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL---I-VP- 78 (353)
T ss_dssp EEEEEEEEGGGTEEEEEE--EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEE---S-SC-
T ss_pred EEeEEEEECCEeeeeEec--eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccc---c-CC-
Confidence 345555555433 3444 556679999999999999999999999999864 33334333210000 0 00
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
..+++++|+||++.+++++++..+.... ......+..+.+.++.++++.+|+.+ ...+.++|+++++ +
T Consensus 79 --~~~r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 79 --PEDRKIGMVFQTWALYPNLTAFENIAFP-LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp --GGGSCEEEEETTSCCCTTSCHHHHHHGG-GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred --hhhCCEEEEeCCCccCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1236799999999887766555544221 11122234455567889999999973 4456789998866 4
Q ss_pred ccCccEEEEecCCC--CH------HHHHHhhhh-cCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TP------IKMMERSIH-SARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~-R~r~~~~~~ 209 (210)
+..|++++++||+. |+ ...++++.+ .|.+++++.
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 198 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 68999999999987 33 345566654 488888774
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=1.3e-21 Score=171.22 Aligned_cols=164 Identities=11% Similarity=0.023 Sum_probs=110.5
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... .
T Consensus 5 ~~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------~-- 71 (362)
T 2it1_A 5 KLENIVKKFGNFTALNN--INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL---------P-- 71 (362)
T ss_dssp EEEEEEEESSSSEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---------C--
T ss_pred EEEeEEEEECCEEEEEe--eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC---------C--
Confidence 34556666654434444 556679999999999999999999999999864 33333333210 0
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hc
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MV 176 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~ 176 (210)
...++++|+||++.+++++++..+.... ......+..+.+.++.++++.+|+. ....+.++|+++++ ++
T Consensus 72 -~~~r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 72 -PKDRNVGLVFQNWALYPHMTVYKNIAFP-LELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp -GGGTTEEEECTTCCCCTTSCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred -HhHCcEEEEecCcccCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH
Confidence 1236799999999888766555544211 1111223445556788999999997 34556789998865 46
Q ss_pred cCccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 177 QKTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
..|++++++||+. |+. ..++++.+ .|.+++++.
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 191 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 8999999999987 443 44566654 388888774
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.83 E-value=1.5e-21 Score=171.31 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=105.7
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++... .
T Consensus 12 l~~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------~- 79 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNK--LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------P- 79 (372)
T ss_dssp EEEEEEEEEETTEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---------C-
T ss_pred EEEEEEEEEECCEEEEee--eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC---------C-
Confidence 445666767765444444 556679999999999999999999999999864 33333333210 0
Q ss_pred HHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------h
Q psy6983 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------M 175 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~ 175 (210)
...++++|+||++.+++++++..+.... ......+..+.+.++.++++.+|+.+ ...+.++|+++++ +
T Consensus 80 --~~~r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 80 --PKDRNISMVFQSYAVWPHMTVYENIAFP-LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp --GGGGTEEEEEC------CCCHHHHHHTT-CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred --hhhCcEEEEecCcccCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 1236799999999888766655554321 11122234455567889999999973 3446678877644 5
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
+..|++++++||+. |+. ..++++.++ |.+++++.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 199 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 78999999999987 443 345566544 88888774
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.83 E-value=1.5e-21 Score=171.43 Aligned_cols=169 Identities=11% Similarity=0.028 Sum_probs=110.3
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++..... +.+ +.
T Consensus 6 ~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~~-~~--- 77 (372)
T 1g29_1 6 LVDVWKVFGEVTAVRE--MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK--GIF-VP--- 77 (372)
T ss_dssp EEEEEEEETTEEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG--TEE-CC---
T ss_pred EEeEEEEECCEEEEee--eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc--ccc-CC---
Confidence 4555555654333444 556679999999999999999999999999864 3344443321000 000 00
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hcc
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~ 177 (210)
...+++||+||++.+++++++..+.... ......+..+.+.++.++++.+|+.+ ...+.++|+++++ ++.
T Consensus 78 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 78 PKDRDIAMVFQSYALYPHMTVYDNIAFP-LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred HhHCCEEEEeCCCccCCCCCHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1236799999999888766655544211 11112234455567889999999973 4456789998866 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
.|++++++||+. |+. ..++++.+ .|.+++++.
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 197 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 999999999987 443 34566654 488888774
No 17
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.82 E-value=4.5e-20 Score=151.33 Aligned_cols=150 Identities=40% Similarity=0.656 Sum_probs=106.9
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC-CcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG-DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQ 131 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~ 131 (210)
+.++|++|+|+|+|||||||++++|++.. .+.+.+++...+....+..+....+..++.++++||.+.+++.+......
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~ 95 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAP 95 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999974 36667777543322223344444434456789999998887777766544
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-hccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-MVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
........+++..+++..+..+..+.+-. .+..+..|...+.. ....||++||||+ ||+++++|+.+|||.
T Consensus 96 ~i~~~l~~~r~v~~dry~~s~~ayq~~~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~--~~e~~~~Ri~~R~r~ 170 (230)
T 2vp4_A 96 TNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRT--SPEVAYERIRQRARS 170 (230)
T ss_dssp CCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEEC--CHHHHHHHHHHHCCG
T ss_pred cccCceeecCCccccHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeC--CHHHHHHHHHHcCCc
Confidence 33334456788888888777766654322 45555556554433 4568999999999 999999999999885
No 18
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=1.8e-20 Score=158.73 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=107.5
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchH--H-HHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLL--A-LMY 106 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l--~-~~~ 106 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+..+. .|.+.++|.++. . ...
T Consensus 22 l~~~~l~~~y~~~~vL~~--isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~------~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKK--ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT------SGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEETTEEEEEE--EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEETTBCCC---CCHH
T ss_pred EEEEeEEEEECCEEEEEe--eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC------CeEEEECCEEcccccCCHH
Confidence 445777777765444444 56667999999999999999999999999986432 122222222211 0 001
Q ss_pred hcccceeeeehhhHh-h----hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-----
Q psy6983 107 ENASRWSLTFQTMVQ-K----TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT----- 174 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l-~----~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~----- 174 (210)
..++.++|+||++.+ + +..+.+................+...++.++++.+|+.+ ...+.++|+++++
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 123679999999753 1 444555432111001111122334456788999999873 3456788988765
Q ss_pred --hccCccEEEEecCCC--CHH------HHHHhhhhcCcee--EEee
Q psy6983 175 --MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFV--LVIE 209 (210)
Q Consensus 175 --~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~--~~~~ 209 (210)
++..|++++++||+. ||+ ..++++.++|+.+ +++.
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 467999999999987 443 4566666668888 8764
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=3.1e-21 Score=168.09 Aligned_cols=158 Identities=15% Similarity=0.067 Sum_probs=105.2
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHh
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
.+++++|+.. .+++ +|+++++|++++|+||||||||||+|+|+|+.. +.+.|+++.. +. .
T Consensus 5 ~~l~~~y~~~-~l~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~---------~~---~ 69 (348)
T 3d31_A 5 ESLSRKWKNF-SLDN--LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD---------LS---P 69 (348)
T ss_dssp EEEEEECSSC-EEEE--EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT---------SC---H
T ss_pred EEEEEEECCE-EEee--eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCC---------Cc---h
Confidence 4455555543 3333 566679999999999999999999999999864 3333333221 11 1
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccC
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~ 178 (210)
.+++++|+||++.+++++++..+.... ......+. . .++.++++.+|+. ....+.++|+++++ ++..
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~-~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFG-MRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHH-HHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHH-HHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 126799999999887766555443211 11111111 1 5678899999987 34456789998865 4689
Q ss_pred ccEEEEecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 179 TMLEVHLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
|++++++||+. |+. ..++++.+ +|.+++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vT 185 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999999987 443 45666654 488888764
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=1.2e-20 Score=156.33 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=104.7
Q ss_pred CCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHH
Q psy6983 31 PFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALM 105 (210)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~ 105 (210)
.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+..+ .+.|.++.. .+ ....
T Consensus 8 ~~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------~~-~~~~ 78 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKG--IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN------KP-AHVI 78 (240)
T ss_dssp EEEEEEEEETTEEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT------CC-HHHH
T ss_pred EEEeEEEEECCeeEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC------CC-HHHH
Confidence 34566666655333444 5666799999999999999999999999998643 333333221 01 1111
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcc-hh--hHHhhhhHHHHHHh-------h
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQ-AL--MYENASRWSLTFQT-------M 175 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~g-l~--~~~~~~~~s~~~~~-------~ 175 (210)
. ++.++|+||++.+++.++...+....... .....+....+.++++.++ +. ....+.++|+++++ +
T Consensus 79 ~--~~~i~~v~q~~~l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 79 N--RMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp H--HTTEEEECSSCCCCTTSBHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred H--hCCEEEEecCCccCCCCcHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 1 24599999998765443333332111100 1112233456778888884 76 23345678888765 4
Q ss_pred ccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 176 VQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+..|++++++||+. ||+ ..++++.++|+.++++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vt 196 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 68999999999987 554 45666666788888874
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.80 E-value=4.8e-21 Score=161.17 Aligned_cols=162 Identities=14% Similarity=0.039 Sum_probs=106.8
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHH
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLAL 104 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~ 104 (210)
+.+.+++++|+....++++ |+++++||+++|+||||||||||+|+|+|+.. +.+.|+++..+ + ..
T Consensus 12 l~~~~l~~~~~~~~vL~~v--sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~------~-~~- 81 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDV--SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW------Q-PK- 81 (266)
T ss_dssp EEEEEEEEEETTEEEEEEE--EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS------C-HH-
T ss_pred EEEEeEEEEeCCeeEEEee--EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC------C-HH-
Confidence 3456677777665555554 55569999999999999999999999999854 33344433221 1 11
Q ss_pred HHhcccceeeeehhhHhh---hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-----
Q psy6983 105 MYENASRWSLTFQTMVQK---TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT----- 174 (210)
Q Consensus 105 ~~~~~~~~~~vfQ~~~l~---~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~----- 174 (210)
..++.++|++|++.++ +..+++..... . ....+.+.++.++++.+|+. ....+.++|+++++
T Consensus 82 --~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 82 --ALARTRAVMRQYSELAFPFSVSEVIQMGRA----P--YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp --HHHHHEEEECSCCCCCSCCBHHHHHHGGGT----T--SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred --HHhheEEEEecCCccCCCCCHHHHHHhhhh----h--cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 1125689999997653 33444433211 0 12234456788899999987 34456789998866
Q ss_pred --hcc------CccEEEEecCCC--CHH------HHHHhhhhcC-ceeEEee
Q psy6983 175 --MVQ------KTMLEVHLDQPI--TPI------KMMERSIHSA-RFVLVIE 209 (210)
Q Consensus 175 --~~~------~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~-r~~~~~~ 209 (210)
++. .|+++|++||+. ||. ..++++.+++ ..++++.
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt 205 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 356 999999999987 553 3556666654 6787764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.80 E-value=2.3e-20 Score=156.92 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=97.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhh-Hhh---hHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM-VQK---TML 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~-~l~---~~~ 125 (210)
+|+++++|++++|+||||||||||+|+|+|+..+. .|.+.++|.++... ..++.++|+||++ .++ +..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~------~G~I~~~g~~~~~~--~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT------SGDVLYDGERKKGY--EIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEECCHH--HHGGGEEEECSSGGGGCCCSSHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC------CcEEEECCEECchH--HhhhhEEEEeccchhhcCCCcHH
Confidence 56777999999999999999999999999986432 22333333332111 2236799999985 332 334
Q ss_pred HHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hH--HhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 126 EVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MY--ENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~--~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
+.+...... . .+..+.++++.++++.+|+. ++ ..+.++|+++++ ++..|++++++||+. ||.
T Consensus 98 enl~~~~~~----~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 98 DEVAFAVKN----F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HHHHHTTTT----T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHh----c-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 444332110 1 12223345678899999986 44 335688988765 468999999999987 443
Q ss_pred ------HHHHhhhhcCceeEEee
Q psy6983 193 ------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.++|+.++++.
T Consensus 173 ~~~~l~~~l~~l~~~g~tii~vt 195 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTLGKTVILIS 195 (266)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEe
Confidence 45566666688888874
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=8.5e-21 Score=154.94 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=105.3
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.+++++|+. ..+++ +|+++++|++++|+||||||||||+++|+|+..+. .|.+.++|.++. ..+
T Consensus 11 l~~~~ls~~y~~-~il~~--vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~------~G~I~~~g~~~~----~~~ 77 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLER--ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL------KGEIIYNGVPIT----KVK 77 (214)
T ss_dssp EEEEEEEEESSS-EEEEE--EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEETTEEGG----GGG
T ss_pred EEEEEEEEEeCC-eEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CeEEEECCEEhh----hhc
Confidence 445667767755 34444 56667999999999999999999999999986532 233333343322 123
Q ss_pred cceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-HhhhhHHHHHHh-------hccCccE
Q psy6983 110 SRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-ENASRWSLTFQT-------MVQKTML 181 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~~~~~~s~~~~~-------~~~~Pdl 181 (210)
+.++|++|++.+++.++...+.... ...... ..+ ...+.++++.+|+..+ ..+.++|+++++ ++..|++
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~-~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l 154 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAV-ASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 154 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHH-HHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHH-HHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 6799999998665433322222100 001111 112 3567788999988642 335678888765 4679999
Q ss_pred EEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 182 EVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 182 ~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
++++||+. || ...++++.++|+.++++.
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999987 33 345666666788888874
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.79 E-value=6.1e-20 Score=153.34 Aligned_cols=159 Identities=13% Similarity=-0.019 Sum_probs=102.7
Q ss_pred CCCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 31 PFCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 31 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
.+.+++++|+ ....+++ +|+++++|++++|+||||||||||+++|+|+.... .|+.. .+
T Consensus 6 ~i~~l~~~y~~~~~vl~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~-----------------~~ 65 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQ--LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIE-----------------VY 65 (253)
T ss_dssp EEEEEEEEETTTTEEEEE--EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEE-----------------EC
T ss_pred EEeeEEEEeCCCCeEEEE--EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEE-----------------Ee
Confidence 3455666665 3333334 56667999999999999999999999999986542 12211 12
Q ss_pred cceeeeehhhHhhh---HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hcc
Q psy6983 110 SRWSLTFQTMVQKT---MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQ 177 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~---~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~ 177 (210)
+.++|+||++.+++ ..+.+................++...+.++++.+|+.+ ...+.++|+++++ ++.
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 57999999986553 33444332110000000112334456788999999873 3446788988765 467
Q ss_pred CccEEEEecCCC--CHH------HHHHhhhhc-CceeEEee
Q psy6983 178 KTMLEVHLDQPI--TPI------KMMERSIHS-ARFVLVIE 209 (210)
Q Consensus 178 ~Pdl~I~Ld~~~--~pe------~~l~Ri~~R-~r~~~~~~ 209 (210)
.|++++++||+. ||. ..+.++.++ |+.++++.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999999987 443 345555555 88888874
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=4.1e-20 Score=153.28 Aligned_cols=162 Identities=10% Similarity=-0.020 Sum_probs=101.4
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
.+++++|+. .+++ +|+++++ ++++|+||||||||||+|+|+|+..+. .|.+.++|.++.. ....++++
T Consensus 5 ~~l~~~y~~--~l~~--isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~------~G~i~~~g~~~~~-~~~~~~~i 72 (240)
T 2onk_A 5 VRAEKRLGN--FRLN--VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD------RGEVRLNGADITP-LPPERRGI 72 (240)
T ss_dssp EEEEEEETT--EEEE--EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS------EEEEEETTEECTT-SCTTTSCC
T ss_pred EEEEEEeCC--EEee--eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC------ceEEEECCEECCc-CchhhCcE
Confidence 444555543 2333 5666788 999999999999999999999986432 1222222222110 00123579
Q ss_pred eeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHh-------hccCccEEE
Q psy6983 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQT-------MVQKTMLEV 183 (210)
Q Consensus 113 ~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~-------~~~~Pdl~I 183 (210)
+|+||++.+++.++...+..... ..... ...++++.++++.+|+.+ ...+.++|+++++ ++..|++++
T Consensus 73 ~~v~q~~~l~~~ltv~enl~~~~-~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 73 GFVPQDYALFPHLSVYRNIAYGL-RNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp BCCCSSCCCCTTSCHHHHHHTTC-TTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred EEEcCCCccCCCCcHHHHHHHHH-HHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999987665444333321111 11111 122456788999999873 3446789998765 468999999
Q ss_pred EecCCC--CHH------HHHHhhhh-cCceeEEee
Q psy6983 184 HLDQPI--TPI------KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 184 ~Ld~~~--~pe------~~l~Ri~~-R~r~~~~~~ 209 (210)
++||+. ||+ ..++++.+ +|+.++++.
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt 184 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999987 554 34555544 488888874
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.78 E-value=2.5e-20 Score=155.29 Aligned_cols=170 Identities=14% Similarity=-0.033 Sum_probs=96.9
Q ss_pred CCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcC--CCcceeeccccccccccCcchH--HHHHh
Q psy6983 32 FCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS--GDITAYAEPVNLWRDVKGHNLL--ALMYE 107 (210)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~--~~i~~~~~~~~~~~~~~~~~~l--~~~~~ 107 (210)
+.+++++|+....+++ +|+++++|++++|+||||||||||+++|+|+ ... ..|.+.++|.++. .....
T Consensus 6 ~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p------~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 6 IRDLWASIDGETILKG--VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV------ERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEETTEEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE------EEEEEEETTEECTTSCHHHH
T ss_pred EEeEEEEECCEEEEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC------CceEEEECCEECCCCCHHHH
Confidence 4555556654333433 5666799999999999999999999999997 221 1222222222210 00001
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCCcccccc--cchhhhHHHHHHHHHHcch-hh--HHhhhh-HHHHHHh-------
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPITPIKMME--RSIHSARWELTQCQICSQA-LM--YENASR-WSLTFQT------- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~--~s~~e~~~~~~~~L~~~gl-~~--~~~~~~-~s~~~~~------- 174 (210)
.+..++|+||++.+++.++...+.......... ....+....+.++++.+|+ .+ ...+.+ +|+++++
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 124589999998665432222111000000001 1222334567889999998 43 233456 9998866
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. ||+ ..++++.++|+.++++.
T Consensus 158 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 158 LVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp HHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 457999999999987 443 34556655688888874
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.77 E-value=4.4e-20 Score=155.29 Aligned_cols=174 Identities=13% Similarity=-0.008 Sum_probs=102.6
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH--HHHh
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA--LMYE 107 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~ 107 (210)
+.+.+++++|+....+++ +|+++++|++++|+||||||||||+|+|+|+.... +..|.+.++|.++.. ....
T Consensus 21 l~~~~l~~~y~~~~vl~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~----p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRG--LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE----VTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp EEEEEEEEEETTEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE----EEEEEEEETTEEGGGSCHHHH
T ss_pred EEEEeEEEEECCEEEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCCeEEEECCEECCcCCHHHH
Confidence 345677777754434444 56667999999999999999999999999973110 112222223322210 0001
Q ss_pred cccceeeeehhhHhhhHHHHHHcCCCC---cc---cccccchhhhHHHHHHHHHHcchh-hH-H-hhh-hHHHHHHh---
Q psy6983 108 NASRWSLTFQTMVQKTMLEVHLDQPIT---PI---KMMERSIHSARWELTQCQICSQAL-MY-E-NAS-RWSLTFQT--- 174 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~~~~~~~~~~~~---~~---~~~~~s~~e~~~~~~~~L~~~gl~-~~-~-~~~-~~s~~~~~--- 174 (210)
.+..++|+||++.+++.++...+.... .. .....+..+....+.++++.+|+. .+ . .+. ++|+++++
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 124589999998654432221111000 00 000112233345678899999985 32 2 233 49998865
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. ||+ ..++++.++|+.++++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 457999999999987 443 34555555688888774
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.77 E-value=1.4e-19 Score=150.63 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=100.7
Q ss_pred ccCCCccccccC--CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcch
Q psy6983 29 SVPFCFLCASQN--HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNL 101 (210)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~ 101 (210)
.+.+.+++++|. ....+++ +|+++++|++++|+||||||||||+++|+|+..+ .+.|.++... +
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~------~- 77 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDN--INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------D- 77 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS------C-
T ss_pred ceeEEEEEEEeCCCCcceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC------C-
Confidence 566677777772 2233333 5666799999999999999999999999998643 3333332210 1
Q ss_pred HHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-------------hhhH
Q psy6983 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-------------ASRW 168 (210)
Q Consensus 102 l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-------------~~~~ 168 (210)
... .++.++|+||++.+++ .++..+...... . .....+.++++.+++.++.. ..++
T Consensus 78 ~~~---~~~~i~~v~Q~~~l~~-~tv~enl~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 146 (247)
T 2ff7_A 78 PNW---LRRQVGVVLQDNVLLN-RSIIDNISLANP---G----MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 146 (247)
T ss_dssp HHH---HHHHEEEECSSCCCTT-SBHHHHHTTTCT---T----CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCC
T ss_pred HHH---HHhcEEEEeCCCcccc-ccHHHHHhccCC---C----CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCC
Confidence 111 1256999999987654 233333321110 0 11234566777777763221 2578
Q ss_pred HHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 169 SLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 169 s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
|+++++ ++..|++++++||+. |++ ..++++ .+|+.++++.
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivt 201 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIA 201 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEe
Confidence 888765 467999999999987 443 344555 3588888874
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.76 E-value=5.6e-19 Score=148.87 Aligned_cols=169 Identities=14% Similarity=-0.031 Sum_probs=98.6
Q ss_pred cCCCccccccCC---CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HH
Q psy6983 30 VPFCFLCASQNH---NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LM 105 (210)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~ 105 (210)
+.+.+++++|+. ...+++ +|+++++|++++|+||||||||||+++|+|+..+. .|.+.++|.++.. ..
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~------~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQG--LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT------GGKVLLDGEPLVQYDH 88 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEEGGGBCH
T ss_pred EEEEEEEEEeCCCCCceeeEe--eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CCEEEECCEEcccCCH
Confidence 445677777764 233443 56667999999999999999999999999986432 1222222222100 00
Q ss_pred HhcccceeeeehhhHhhh--HHHHHHcCCCCcccccc-cchh--hhHHHHHHHHHHc--chh--hHHhhhhHHHHHHh--
Q psy6983 106 YENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMME-RSIH--SARWELTQCQICS--QAL--MYENASRWSLTFQT-- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~-~s~~--e~~~~~~~~L~~~--gl~--~~~~~~~~s~~~~~-- 174 (210)
...++.++|+||++.+++ ..+++..... .... .... .....+.++++.+ |+. ....+.++|+++++
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv 165 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLT---RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV 165 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCS---SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcc---cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH
Confidence 011256999999986653 3333433211 0000 0000 1111234556665 554 23445678888755
Q ss_pred -----hccCccEEEEecCCC--CHH------HHHHhhh-hcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPI------KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~-~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..++++. ++|+.++++.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 468999999999987 443 2344443 2478888764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.75 E-value=7.2e-19 Score=145.83 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=98.5
Q ss_pred Ccccccc-CCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHH
Q psy6983 33 CFLCASQ-NHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMY 106 (210)
Q Consensus 33 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~ 106 (210)
.+++++| +....+++ +|+++++|++++|+||||||||||+++|+|+.. +.+.|.++.... ..
T Consensus 5 ~~l~~~y~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----------~~ 72 (243)
T 1mv5_A 5 RHVDFAYDDSEQILRD--ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS----------LE 72 (243)
T ss_dssp EEEEECSSSSSCSEEE--EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS----------CS
T ss_pred EEEEEEeCCCCceEEE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----------HH
Confidence 4455555 22233333 566679999999999999999999999999854 334444332110 00
Q ss_pred hcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-------------hhhhHHHHHH
Q psy6983 107 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-------------NASRWSLTFQ 173 (210)
Q Consensus 107 ~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-------------~~~~~s~~~~ 173 (210)
..++.++|++|++.+++ .+...+...... .. .....+.++++.+++.++. ...++|++++
T Consensus 73 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMA-GTIRENLTYGLE--GD----YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CCTTTCCEECCSSCCCC-EEHHHHTTSCTT--SC----SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHHhhEEEEcCCCcccc-ccHHHHHhhhcc--CC----CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 12356899999987665 244444432100 01 1123456677777775221 2347888876
Q ss_pred h-------hccCccEEEEecCCC--C------HHHHHHhhhhcCceeEEee
Q psy6983 174 T-------MVQKTMLEVHLDQPI--T------PIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 174 ~-------~~~~Pdl~I~Ld~~~--~------pe~~l~Ri~~R~r~~~~~~ 209 (210)
+ ++..|++++++||+. | -...+.++. +|+.++++.
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vt 195 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIA 195 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 5 467999999999987 2 234555665 588888874
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.74 E-value=4.8e-19 Score=147.64 Aligned_cols=147 Identities=13% Similarity=-0.048 Sum_probs=95.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HHHhcccceeeeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
+|+++++|++++|+||||||||||+|+|+|+.... |+ +.++|.++.. .....++.++|++|++.+++.++..
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~-----i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GS-----IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EE-----EEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eE-----EEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 56667999999999999999999999999987543 22 2223322210 0011225699999998665433332
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchhh--HHhhhhHHHHHHhh-------ccCcc-------EEEEecCCC--C
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQALM--YENASRWSLTFQTM-------VQKTM-------LEVHLDQPI--T 190 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~--~~~~~~~s~~~~~~-------~~~Pd-------l~I~Ld~~~--~ 190 (210)
.+....... .. . ...+.++++.+|+.+ ...+.++|++++++ +..|+ +++++||+. |
T Consensus 92 e~l~~~~~~--~~---~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD 165 (249)
T 2qi9_C 92 HYLTLHQHD--KT---R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165 (249)
T ss_dssp HHHHTTCSS--TT---C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCC
T ss_pred HHHHHhhcc--CC---c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCC
Confidence 222111100 11 1 356788899999873 34467899988653 56899 999999987 4
Q ss_pred H------HHHHHhhhhcCceeEEee
Q psy6983 191 P------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 191 p------e~~l~Ri~~R~r~~~~~~ 209 (210)
| ...++++.++|+.++++.
T Consensus 166 ~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 166 VAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4 345566665688888874
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.74 E-value=1.2e-18 Score=149.27 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=99.0
Q ss_pred ccCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l 102 (210)
.+.+.+++++|+.. ..+++ +|+++++|++++|+||||||||||+++|+|+++ +.++|.++... + .
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~--isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~------~-~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQD--VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV------T-Q 123 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEE--EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB------C-H
T ss_pred eEEEEEEEEEcCCCCceeee--eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC------C-H
Confidence 45677788777542 23333 667779999999999999999999999999865 33444443321 1 1
Q ss_pred HHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-------------hhhh
Q psy6983 103 ALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-------------NASR 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-------------~~~~ 167 (210)
... ++.++||||++.+++ ..+++..... ... .....++++.+++.++. ...+
T Consensus 124 ~~~---r~~i~~v~Q~~~lf~~Tv~eNi~~~~~------~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~ 190 (306)
T 3nh6_A 124 ASL---RSHIGVVPQDTVLFNDTIADNIRYGRV------TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190 (306)
T ss_dssp HHH---HHTEEEECSSCCCCSEEHHHHHHTTST------TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBC
T ss_pred HHH---hcceEEEecCCccCcccHHHHHHhhcc------cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCC
Confidence 222 367999999987763 3344433211 011 12344455555554211 1136
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+|+++++ ++..|+++|++|++. |++ ..+.++. +++++++|.
T Consensus 191 LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~it 246 (306)
T 3nh6_A 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVA 246 (306)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 7888755 467999999999987 443 2344443 478888874
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.74 E-value=7.8e-19 Score=155.00 Aligned_cols=160 Identities=14% Similarity=0.025 Sum_probs=100.2
Q ss_pred ccCCCccccccC--CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC----cceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQN--HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~----i~~~~~~~~~~~~~~~~~~l 102 (210)
.+.+.+++++|+ ....+++ +|+++++||+++|+||||||||||+|+|+|+.. +.+.|+++.. .+ .
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~------~~-~ 89 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILEN--ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDS------IT-L 89 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEE--EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTS------SC-H
T ss_pred eEEEEEEEEEecCCCeEEeec--eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCc------CC-h
Confidence 456677888884 3344444 556679999999999999999999999999853 2233333221 11 1
Q ss_pred HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH--hhhh-----------HH
Q psy6983 103 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE--NASR-----------WS 169 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~--~~~~-----------~s 169 (210)
.. .++.++|+||++.+++ .++..+... .. ......+.++++.+++.++. .+.+ +|
T Consensus 90 ~~---~rr~ig~v~Q~~~lf~-~tv~enl~~-----~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 90 EQ---WRKAFGVIPQKVFIFS-GTFRKNLDP-----NA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HH---HHHTEEEESCCCCCCS-EEHHHHHCT-----TC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred HH---HhCCEEEEcCCcccCc-cCHHHHhhh-----cc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 11 2367999999998775 233333211 00 01224567788888887322 2344 89
Q ss_pred HHHHh-------hccCccEEEEecCCC--CHH---HHHHhhh--hcCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TPI---KMMERSI--HSARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~--~R~r~~~~~~ 209 (210)
+++++ ++..|++++++||+. |+. .+++-|. .++..++++.
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vt 211 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 98865 467999999988876 442 2222222 2466777663
No 34
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.73 E-value=7.5e-18 Score=155.52 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=104.9
Q ss_pred ccCCCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HH
Q psy6983 29 SVPFCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LM 105 (210)
Q Consensus 29 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~ 105 (210)
.+.+.+++++|+. ...+++ +|+++++||+++|+||||||||||+++|+|+.++ ..|.+.++|.++.. ..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~--i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p------~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSH--VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV------DSGSICLDGHDVRDYKL 412 (582)
T ss_pred eEEEEEEEEEcCCCCcccccc--ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCCEEEECCEEhhhCCH
Confidence 3567778877764 233444 5667799999999999999999999999998643 22233333333211 01
Q ss_pred HhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-------------hhhHHHHH
Q psy6983 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-------------ASRWSLTF 172 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-------------~~~~s~~~ 172 (210)
...+++++|++|++.+++. +...+...... .. ...+.+.++++.+++.++.. ..++|+++
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE-----GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC-----CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 1223679999999987753 44444422110 11 12244667777777763221 24788887
Q ss_pred Hh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 173 QT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 173 ~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++ ++..|++++++||+. |++. +++++. +|+++++|.
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 536 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIA 536 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 65 467999999999987 4433 344443 488888874
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.72 E-value=3.7e-18 Score=143.01 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=97.8
Q ss_pred cCCCccccccCCC---CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHH-HH
Q psy6983 30 VPFCFLCASQNHN---STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLA-LM 105 (210)
Q Consensus 30 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~-~~ 105 (210)
+.+.+++++|+.. ..+++ +|+++++|++++|+||||||||||+++|+|+... .|+ +.++|.++.. ..
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~-----I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKS--INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGD-----IKIGGKNVNKYNR 88 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEE-----EEETTEEGGGBCH
T ss_pred EEEEEEEEEeCCCCcCceeEe--eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeE-----EEECCEEhhhcCH
Confidence 4456677677542 23333 5677799999999999999999999999998642 222 2223322210 00
Q ss_pred HhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-------------hhhhHHH
Q psy6983 106 YENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-------------NASRWSL 170 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-------------~~~~~s~ 170 (210)
...++.++|+||++.+++ ..+++.... . .. ....+.++++.+++.++. ...++|+
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~---~---~~----~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg 158 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFNETIKYNILYGK---L---DA----TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158 (260)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHHTTC---T---TC----CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH
T ss_pred HHHhccEEEEcCCCcccccCHHHHHhccC---C---CC----CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH
Confidence 112367999999986653 333332211 0 11 112345666666665321 2357888
Q ss_pred HHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++++ ++..|+++|++||+. ||+. +++++. +++.++++.
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivt 211 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIA 211 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEc
Confidence 8765 457999999999987 4432 445554 478888764
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.69 E-value=7.9e-18 Score=155.36 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=101.8
Q ss_pred ccCCCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcch
Q psy6983 29 SVPFCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNL 101 (210)
Q Consensus 29 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~ 101 (210)
.+.+.+++++|+.. ..+++ +|+++++||+++|+||||||||||+++|+|+.++ .++|.++.. .+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~--v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~------~~- 411 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRN--INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE------YT- 411 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEE--EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT------BC-
T ss_pred cEEEEEEEEEcCCCCCccccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc------cC-
Confidence 35667777777642 33343 6677799999999999999999999999998653 333333321 01
Q ss_pred HHHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-------------hh
Q psy6983 102 LALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-------------AS 166 (210)
Q Consensus 102 l~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-------------~~ 166 (210)
.... +++++|++|++.+++ ..+++..... .+ ...+.+.++++.+++.++.. ..
T Consensus 412 ~~~~---~~~i~~v~Q~~~l~~~tv~eni~~~~~-----~~----~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~ 479 (582)
T 3b60_A 412 LASL---RNQVALVSQNVHLFNDTVANNIAYART-----EE----YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479 (582)
T ss_dssp HHHH---HHTEEEECSSCCCCSSBHHHHHHTTTT-----SC----CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSC
T ss_pred HHHH---HhhCeEEccCCcCCCCCHHHHHhccCC-----CC----CCHHHHHHHHHHcCCHHHHHhccccccccccCCCC
Confidence 1222 367999999987764 3333332210 01 11234667777777763221 24
Q ss_pred hHHHHHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 167 RWSLTFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 167 ~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++|+++++ ++..|++++++||+. |++. +++++. +|+++++|.
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 536 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIA 536 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 68888765 457999999999987 4433 344444 488888874
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.68 E-value=1.3e-17 Score=153.80 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=99.7
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~ 103 (210)
++.+.+++++|+.......-.+|+++++||+++|+||||||||||+++|+|+.++ .++|.++... + ..
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~------~-~~ 411 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF------L-TG 411 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS------C-HH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC------C-HH
Confidence 4567777777765332223346677799999999999999999999999998653 3333333211 1 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~ 170 (210)
. .+++++|++|++.+++. +...+.... .+..++ +...++++..++.++ ....++|+
T Consensus 412 ~---~r~~i~~v~Q~~~l~~~-tv~eni~~~------~~~~~~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 412 S---LRNQIGLVQQDNILFSD-TVKENILLG------RPTATD-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp H---HHHTEEEECSSCCCCSS-BHHHHHGGG------CSSCCH-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred H---HhhheEEEeCCCccCcc-cHHHHHhcC------CCCCCH-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 2 23679999999877653 333332111 111111 234455555555421 11246888
Q ss_pred HHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++++ ++..|++++++||+. ||+. +++++ .+++++++|.
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~it 533 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVA 533 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEEEEEe
Confidence 8765 457999999999987 5542 23333 3578888874
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.68 E-value=6.9e-18 Score=141.67 Aligned_cols=142 Identities=11% Similarity=-0.055 Sum_probs=88.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhccccee-eeehhhHhhhHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWS-LTFQTMVQKTMLEVH 128 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~vfQ~~~l~~~~~~~ 128 (210)
+|++++ |++++|+||||||||||+|+|+|+. +. .|.+.++|.++... ..+++++ |++|++.+ .++..
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~------~G~I~~~g~~~~~~--~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY------SGNIFINGMEVRKI--RNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC------EEEEEETTEEGGGC--SCCTTEEECCGGGSCT--TSBHH
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC------CcEEEECCEECcch--HHhhheEEEeCCCCcc--CCcHH
Confidence 556678 9999999999999999999999986 32 22223333332111 1246799 99999765 22222
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchh-h--HHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH---H
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQAL-M--YENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI---K 193 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~--~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe---~ 193 (210)
.+.... .... ......+.++++.+|+. + ...+.++|+++++ ++..|++++++||+. |++ .
T Consensus 92 enl~~~-~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (263)
T 2pjz_A 92 DIVYLY-EELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166 (263)
T ss_dssp HHHHHH-HHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHh-hhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence 221100 0000 12234678889999886 4 3346688988765 467999999999987 443 3
Q ss_pred HHHhhhhcCceeEEe
Q psy6983 194 MMERSIHSARFVLVI 208 (210)
Q Consensus 194 ~l~Ri~~R~r~~~~~ 208 (210)
+++-+.+-.+.++++
T Consensus 167 l~~~L~~~~~tviiv 181 (263)
T 2pjz_A 167 ISRYIKEYGKEGILV 181 (263)
T ss_dssp HHHHHHHSCSEEEEE
T ss_pred HHHHHHHhcCcEEEE
Confidence 334444433356655
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.67 E-value=1.6e-17 Score=153.74 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=101.7
Q ss_pred cCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHH
Q psy6983 30 VPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~ 103 (210)
+.+.+++++|+... ....-.+|+++++||+++|+||||||||||+++|+|+.++ .++|.++... + ..
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~------~-~~ 414 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL------N-PV 414 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTB------C-HH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhC------C-HH
Confidence 66777887776431 1122336777799999999999999999999999998653 3333333210 1 12
Q ss_pred HHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-h------------hhhH
Q psy6983 104 LMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-N------------ASRW 168 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-~------------~~~~ 168 (210)
. .+++++|++|++.+++ ..+++..... .. ...+.+.+.++++.+++.++. . ..++
T Consensus 415 ~---~~~~i~~v~Q~~~l~~~tv~eni~~~~~------~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 415 W---LRSKIGTVSQEPILFSCSIAENIAYGAD------DP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp H---HHHSEEEECSSCCCCSSBHHHHHHTTSS------ST-TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred H---HHhceEEEccCCcccCCCHHHHHhhcCC------Cc-cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 1 2367999999987764 3333332211 00 011234567778887775221 1 1468
Q ss_pred HHHHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 169 SLTFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 169 s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
|+++++ ++..|++++++||+. |++. +++++. +++++++|.
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 539 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIA 539 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH-TTSEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 888765 457999999999987 4432 334443 388888874
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=1.2e-17 Score=154.40 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=98.7
Q ss_pred ccCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHH
Q psy6983 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLA 103 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~ 103 (210)
.+.+.+++++|+.......-.+|+++++||+++|+||||||||||+++|+|+++ +.++|.++... + ..
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~------~-~~ 413 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV------K-LK 413 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB------C-HH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC------C-HH
Confidence 466777887776433223334667779999999999999999999999999865 33334433221 1 12
Q ss_pred HHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------HhhhhHHH
Q psy6983 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASRWSL 170 (210)
Q Consensus 104 ~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~~s~ 170 (210)
.. +++++|++|++.+++. +...+..... ....+ +...++++..++.++ +...++|+
T Consensus 414 ~~---r~~i~~v~Q~~~lf~~-tv~eni~~~~------~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 414 DL---RGHISAVPQETVLFSG-TIKENLKWGR------EDATD-DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp HH---HHHEEEECSSCCCCSE-EHHHHHTTTC------SSCCH-HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred HH---HhheEEECCCCcCcCc-cHHHHHhccC------CCCCH-HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 22 3679999999987642 3333322111 00111 123334444443311 12346888
Q ss_pred HHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 171 TFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 171 ~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++++ ++..|+++|++|++. |++. .++++ .+|+++++|.
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~it 535 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIIT 535 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 8765 467999999999987 4432 23333 3689998874
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.66 E-value=8.3e-17 Score=132.30 Aligned_cols=149 Identities=13% Similarity=0.009 Sum_probs=89.7
Q ss_pred cCCCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh
Q psy6983 30 VPFCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE 107 (210)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 107 (210)
+.+.+++++|+. ...+++ +|+++++|++++|+||||||||||+++|+|+..+. .|.+.++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~------~G~i~~~g--------- 69 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKD--INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS------EGKIKHSG--------- 69 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEE--EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEECS---------
T ss_pred EEEEEEEEEeCCCCceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC------ccEEEECC---------
Confidence 345566666642 234444 56666999999999999999999999999986542 23333332
Q ss_pred cccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-------------hhhhHHHHH
Q psy6983 108 NASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-------------NASRWSLTF 172 (210)
Q Consensus 108 ~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-------------~~~~~s~~~ 172 (210)
+++|++|++.+++ ..+++.... . . . + ....+.++..++.+.. ...++|+++
T Consensus 70 ---~i~~v~q~~~~~~~tv~enl~~~~----~-~--~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGq 135 (229)
T 2pze_A 70 ---RISFCSQFSWIMPGTIKENIIFGV----S-Y--D--E--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ 135 (229)
T ss_dssp ---CEEEECSSCCCCSBCHHHHHHTTS----C-C--C--H--HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHH
T ss_pred ---EEEEEecCCcccCCCHHHHhhccC----C-c--C--h--HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHH
Confidence 4899999986654 333333211 0 0 0 0 1122333334433110 125788887
Q ss_pred Hh-------hccCccEEEEecCCC--CHHH---HHHhhh---hcCceeEEee
Q psy6983 173 QT-------MVQKTMLEVHLDQPI--TPIK---MMERSI---HSARFVLVIE 209 (210)
Q Consensus 173 ~~-------~~~~Pdl~I~Ld~~~--~pe~---~l~Ri~---~R~r~~~~~~ 209 (210)
++ ++..|++++++||+. ||.. +++.+. .+++.++++.
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vt 187 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 65 467999999999987 4433 333321 2467777764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=1.1e-16 Score=148.26 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=98.2
Q ss_pred ccCCCccccccCCC-CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHN-STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
++.+.+++++|+.. ..+++ +|+++++||+++|+||||||||||+++|+|+.++ .++|.++... + .
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~--isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~------~-~ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKD--ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI------K-R 424 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCS--EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS------C-H
T ss_pred eEEEEEEEEECCCCCccccc--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC------C-H
Confidence 45677777777643 34444 5666799999999999999999999999998653 3333333211 1 1
Q ss_pred HHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-------------Hhhhh
Q psy6983 103 ALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-------------ENASR 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-------------~~~~~ 167 (210)
.. .+++++|++|++.+++ ..+++.... ...++ +...++++.+++.++ ..-.+
T Consensus 425 ~~---~r~~i~~v~Q~~~lf~~tv~eni~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 425 SS---LRSSIGIVLQDTILFSTTVKENLKYGN---------PGATD-EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp HH---HHHHEEEECTTCCCCSSBHHHHHHSSS---------TTCCT-THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred HH---HHhceEEEeCCCccccccHHHHHhcCC---------CCCCH-HHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 22 2367999999987764 333333221 00111 123344444444311 12246
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
+|+++++ ++..|+++|++|++. |++ .+++++. +|+++++|.
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 547 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIA 547 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEES
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 8888765 467999999999987 543 2344443 589988874
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.64 E-value=6.7e-17 Score=133.56 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=89.0
Q ss_pred CCCccccccCC--CCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhc
Q psy6983 31 PFCFLCASQNH--NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108 (210)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (210)
.+.+++++|+. ...+++ +|+++++|++++|+||||||||||+++|+|+..+ ..|.+.++|
T Consensus 5 ~~~~l~~~y~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p------~~G~I~~~g---------- 66 (237)
T 2cbz_A 5 TVRNATFTWARSDPPTLNG--ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK------VEGHVAIKG---------- 66 (237)
T ss_dssp EEEEEEEESCTTSCCSEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE------EEEEEEECS----------
T ss_pred EEEEEEEEeCCCCCceeee--eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC------CCceEEECC----------
Confidence 34556666652 233444 5666799999999999999999999999998643 223333333
Q ss_pred ccceeeeehhhHhh--hHHHHHHcCCCCcccccccchhhhHHHHHH---HHHHcchhh-------HHhhhhHHHHHHh--
Q psy6983 109 ASRWSLTFQTMVQK--TMLEVHLDQPITPIKMMERSIHSARWELTQ---CQICSQALM-------YENASRWSLTFQT-- 174 (210)
Q Consensus 109 ~~~~~~vfQ~~~l~--~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~---~L~~~gl~~-------~~~~~~~s~~~~~-- 174 (210)
+++|++|++.++ +..+++..... . . .+....+.+ +++.+++.. .....++|+++++
T Consensus 67 --~i~~v~Q~~~~~~~tv~enl~~~~~----~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv 136 (237)
T 2cbz_A 67 --SVAYVPQQAWIQNDSLRENILFGCQ----L-E---EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV 136 (237)
T ss_dssp --CEEEECSSCCCCSEEHHHHHHTTSC----C-C---TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH
T ss_pred --EEEEEcCCCcCCCcCHHHHhhCccc----c-C---HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 489999997542 33344433210 1 1 111111111 112222210 1234578888765
Q ss_pred -----hccCccEEEEecCCC--CHH---HHHHhhh-----hcCceeEEee
Q psy6983 175 -----MVQKTMLEVHLDQPI--TPI---KMMERSI-----HSARFVLVIE 209 (210)
Q Consensus 175 -----~~~~Pdl~I~Ld~~~--~pe---~~l~Ri~-----~R~r~~~~~~ 209 (210)
++..|++++++||+. ||+ ..++.+. .+++.++++.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt 186 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 457999999999987 554 3444442 3577888764
No 44
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.63 E-value=2.5e-15 Score=123.46 Aligned_cols=147 Identities=29% Similarity=0.446 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC-Ccceeeccccccccc------------cCcchHHHHHhcccceeeeehhhHhh
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG-DITAYAEPVNLWRDV------------KGHNLLALMYENASRWSLTFQTMVQK 122 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~-~i~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~vfQ~~~l~ 122 (210)
+|.+|+|.|++||||||+++.|+..+ +..+..++...+..+ .|.+++..++.++.++++.+|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 80 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARWSYTFQTFSFL 80 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCeeeecchhhhccccccccccccccccCCchHHHHHhCcccchhHHHHHHHH
Confidence 36789999999999999999999876 455556666655322 23456777776665567778877776
Q ss_pred hHHHHHHcCC-------CCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhc---cCccEEEEecCCC
Q psy6983 123 TMLEVHLDQP-------ITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMV---QKTMLEVHLDQPI 189 (210)
Q Consensus 123 ~~~~~~~~~~-------~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~---~~Pdl~I~Ld~~~ 189 (210)
.++....... ..+....+++..+|+..+..+....+.. ++..+.+|...+...+ ..||++|||++
T Consensus 81 ~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~i~l~~-- 158 (241)
T 2ocp_A 81 SRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQA-- 158 (241)
T ss_dssp HHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEEEEEEC--
T ss_pred HHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEEEEEEC--
Confidence 6666533221 1123356788888887777776654432 4445666666555444 38999999999
Q ss_pred CHHHHHHhhhhcCce
Q psy6983 190 TPIKMMERSIHSARF 204 (210)
Q Consensus 190 ~pe~~l~Ri~~R~r~ 204 (210)
||+++++|+.+|+|.
T Consensus 159 ~~~~~~~R~~~R~r~ 173 (241)
T 2ocp_A 159 SPQVCLKRLYQRARE 173 (241)
T ss_dssp CHHHHHHHHHHSCCT
T ss_pred CHHHHHHHHHhcCCc
Confidence 999999999999984
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.62 E-value=3.6e-16 Score=155.85 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=105.4
Q ss_pred ccCCCccccccCCCCC-CccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNST-GKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l 102 (210)
++.|.+++++|+.... ...-.+|+++++||.+||+|+||||||||+++|.|+++ +.++|.++... + +
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i------~-~ 1148 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL------N-P 1148 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB------C-H
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC------C-H
Confidence 4668888888865432 23344677789999999999999999999999999865 44444444321 1 3
Q ss_pred HHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHh-----h--------hh
Q psy6983 103 ALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN-----A--------SR 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-----~--------~~ 167 (210)
... ++++++|+|++.+|+ ..+++.....+ ...++ +.+.++++.+++.++-. | .+
T Consensus 1149 ~~l---R~~i~~V~Qdp~LF~gTIreNI~~gld~-------~~~sd-~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1149 EHT---RSQIAIVSQEPTLFDCSIAENIIYGLDP-------SSVTM-AQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp HHH---HTTEEEECSSCCCCSEEHHHHHSSSSCT-------TTSCH-HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred HHH---HhheEEECCCCEeeCccHHHHHhccCCC-------CCCCH-HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcc
Confidence 333 378999999999875 34444332211 11122 34666777777752211 1 24
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--C--HHHHHHhhh---hcCceeEEe
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--T--PIKMMERSI---HSARFVLVI 208 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~--pe~~l~Ri~---~R~r~~~~~ 208 (210)
+|++.++ ++..|+++|++|+|. | .|..+++.. .++|++++|
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 7777655 467999999999987 3 344444433 258899887
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.60 E-value=1.4e-15 Score=151.57 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=103.1
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
++.|.+++++|+... ....-.+|+++++|+.+||+||||||||||+++|.|++++ .++|.++.+. + +
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~------~-~ 487 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI------N-L 487 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS------C-H
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc------c-H
Confidence 566788888876532 2333446777899999999999999999999999999763 3334443321 1 2
Q ss_pred HHHHhcccceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh-hHHh----h--------hh
Q psy6983 103 ALMYENASRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL-MYEN----A--------SR 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~----~--------~~ 167 (210)
... +++++||+|++.+++ ..+++..+.. .. ..+.+.++++..++. +... | ..
T Consensus 488 ~~l---r~~i~~v~Q~~~Lf~~TI~eNI~~g~~---------~~-~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~ 554 (1321)
T 4f4c_A 488 EFL---RKNVAVVSQEPALFNCTIEENISLGKE---------GI-TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554 (1321)
T ss_dssp HHH---HHHEEEECSSCCCCSEEHHHHHHTTCT---------TC-CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCC
T ss_pred HHH---hhcccccCCcceeeCCchhHHHhhhcc---------cc-hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCC
Confidence 322 267999999998864 4555544311 11 123455666666654 1111 1 25
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CH------HHHHHhhhhcCceeEEe
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TP------IKMMERSIHSARFVLVI 208 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~ 208 (210)
+|+++++ ++..|+++|++|++. |+ +.++.++ .+||++++|
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~-~~~~T~iii 609 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA-AKGRTTIII 609 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH-HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH-hCCCEEEEE
Confidence 7777655 468999999999987 32 2333333 369999987
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.58 E-value=4.5e-15 Score=135.94 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=100.5
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccccc----ccccCcchHH---HH
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLW----RDVKGHNLLA---LM 105 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~----~~~~~~~~l~---~~ 105 (210)
.+++++|+... ....++| ++++||+++|+||||||||||+|+|+|..... .|+....+ ..+.|.++.. ..
T Consensus 25 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-~G~~~~~~~~~~~~~~g~~~~~~~~~~ 101 (538)
T 1yqt_A 25 EDCVHRYGVNA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQNYFEKL 101 (538)
T ss_dssp CCEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSHHHHHHHTTTSTHHHHHHHH
T ss_pred cCcEEEECCcc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCccCcchhhhHHhhCCccHHHHHHHH
Confidence 35666665432 2234466 78999999999999999999999999986432 12210000 0123333321 11
Q ss_pred HhcccceeeeehhhHhhhHH---HHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh------
Q psy6983 106 YENASRWSLTFQTMVQKTML---EVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT------ 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~~---~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~------ 174 (210)
......+++++|...+.+.. +.... .. ..+...++.++++.+|+. ....+.++|+++++
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~~~~~v~e~--------~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAr 171 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKAVKGKVIEL--------LK--KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAA 171 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGGCCSBHHHH--------HH--HHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhcchhhhccHHHH--------Hh--hhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHH
Confidence 11223578888875433211 00000 00 011123467789999987 33456788998766
Q ss_pred -hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 -MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 -~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++|||. |+. ..++++.++|..+++|+
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vs 215 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 457999999999998 654 46677777789999885
No 48
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.57 E-value=7.1e-15 Score=122.37 Aligned_cols=148 Identities=28% Similarity=0.437 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC-Ccceeeccccccccc---------------cCcchHHHHHhcccceeeeehh
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG-DITAYAEPVNLWRDV---------------KGHNLLALMYENASRWSLTFQT 118 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~-~i~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~vfQ~ 118 (210)
+++.+|+|+|++||||||+++.|+..+ +..+..+++..|..+ .|.+++..++.+..++++.+|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~ 101 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQT 101 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCchHHHHHhCchhcchHHHH
Confidence 677899999999999999999999876 454555555444321 2345566666655556777777
Q ss_pred hHhhhHHHHHH-----cCC--CCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhc---cCccEEEEe
Q psy6983 119 MVQKTMLEVHL-----DQP--ITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMV---QKTMLEVHL 185 (210)
Q Consensus 119 ~~l~~~~~~~~-----~~~--~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~---~~Pdl~I~L 185 (210)
+.++....... +.. .......++....|+..+.......+.. ++..|.+|...+...+ ..||++|||
T Consensus 102 ~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~vi~L 181 (263)
T 1p5z_B 102 YACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYL 181 (263)
T ss_dssp HHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhccCCCCeEEEE
Confidence 66555443321 111 1112334567778877777766654332 4556667766554443 389999999
Q ss_pred cCCCCHHHHHHhhhhcCce
Q psy6983 186 DQPITPIKMMERSIHSARF 204 (210)
Q Consensus 186 d~~~~pe~~l~Ri~~R~r~ 204 (210)
++ ||+++++|+.+|+|+
T Consensus 182 ~~--~~e~~~~Ri~~R~r~ 198 (263)
T 1p5z_B 182 QA--TPETCLHRIYLRGRN 198 (263)
T ss_dssp EC--CHHHHHHHHHHHCCG
T ss_pred EC--CHHHHHHHHHhcCCc
Confidence 99 999999999999985
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.57 E-value=6.4e-15 Score=136.61 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=101.0
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccc----cccCcchHHH---H
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWR----DVKGHNLLAL---M 105 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~----~~~~~~~l~~---~ 105 (210)
.+++++|+... .....+| ++++||+++|+||||||||||+|+|+|+.... .|+....+. .+.|.++... .
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhh
Confidence 45666676542 2233456 68999999999999999999999999986432 122111110 2234433221 1
Q ss_pred HhcccceeeeehhhHhhhH------HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh---
Q psy6983 106 YENASRWSLTFQTMVQKTM------LEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT--- 174 (210)
Q Consensus 106 ~~~~~~~~~vfQ~~~l~~~------~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~--- 174 (210)
......+++++|.....+. .+.+.. .+...++.++++.+|+. ....+.++|+++++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~-------------~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva 238 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------------VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHH-------------TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhh-------------hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH
Confidence 1222456788887543221 111110 11123467788999987 34446789998865
Q ss_pred ----hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 ----MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ----~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|++++++||+. |+. ..++++.++|..+++|+
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivs 285 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 457999999999998 554 36677777799999886
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.56 E-value=2.6e-15 Score=127.63 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=82.8
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcc
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENA 109 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (210)
+.+.++++. ....+++ +|+++++|++++|+||||||||||+|+|+|+..+. .|.+.++|
T Consensus 41 l~~~~l~~~--~~~vl~~--isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~------~G~I~~~g----------- 99 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKD--INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS------EGKIKHSG----------- 99 (290)
T ss_dssp -----------CCCSEEE--EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE------EEEEECCS-----------
T ss_pred EEEEEEEEc--CceEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC------CcEEEECC-----------
Confidence 445555543 2233333 56677999999999999999999999999986542 23333322
Q ss_pred cceeeeehhhHhhh--HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhH-H------------hhhhHHHHHHh
Q psy6983 110 SRWSLTFQTMVQKT--MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMY-E------------NASRWSLTFQT 174 (210)
Q Consensus 110 ~~~~~vfQ~~~l~~--~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~-~------------~~~~~s~~~~~ 174 (210)
+++|++|++.+++ ..+++. .. .. . + ....+.++..++.+. . ...++|+++++
T Consensus 100 -~i~~v~Q~~~l~~~tv~enl~-~~----~~---~--~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~Q 166 (290)
T 2bbs_A 100 -RISFCSQNSWIMPGTIKENII-GV----SY---D--E--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166 (290)
T ss_dssp -CEEEECSSCCCCSSBHHHHHH-TT----CC---C--H--HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHH
T ss_pred -EEEEEeCCCccCcccHHHHhh-Cc----cc---c--h--HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHH
Confidence 5899999986654 333333 11 00 0 0 112333444444311 1 12468888765
Q ss_pred -------hccCccEEEEecCCC--CHHH---HHHhhh---hcCceeEEee
Q psy6983 175 -------MVQKTMLEVHLDQPI--TPIK---MMERSI---HSARFVLVIE 209 (210)
Q Consensus 175 -------~~~~Pdl~I~Ld~~~--~pe~---~l~Ri~---~R~r~~~~~~ 209 (210)
++..|++++++||+. |+.. +++.+. .+++.++++.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivt 216 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 467999999999987 4433 223221 2477888764
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.55 E-value=2.1e-15 Score=150.05 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=97.4
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
.+.|.+++++|+... ....-.+|+++++||+++|+||||||||||+++|+|++++ .++|.++.. .+ .
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~------~~-~ 459 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT------IN-V 459 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG------SC-H
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh------CC-H
Confidence 466777888876532 2223336677799999999999999999999999998753 333333321 11 2
Q ss_pred HHHHhcccceeeeehhhHhhhH--HHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhh-HH------------hhhh
Q psy6983 103 ALMYENASRWSLTFQTMVQKTM--LEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM-YE------------NASR 167 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~--~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~-~~------------~~~~ 167 (210)
... +++++||+|++.+++. .+++..... +.+ + +...++++..++.+ .. .-.+
T Consensus 460 ~~~---r~~i~~v~Q~~~l~~~ti~eNi~~g~~------~~~---~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 526 (1284)
T 3g5u_A 460 RYL---REIIGVVSQEPVLFATTIAENIRYGRE------DVT---M-DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526 (1284)
T ss_dssp HHH---HHHEEEECSSCCCCSSCHHHHHHHHCS------SCC---H-HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred HHH---HhheEEEcCCCccCCccHHHHHhcCCC------CCC---H-HHHHHHHHHhCcHHHHHhccccccccccCCCCc
Confidence 222 3579999999987642 333322211 011 1 22333444444331 11 1126
Q ss_pred HHHHHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 168 WSLTFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 168 ~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
+|+++++ ++..|+++|++|+|. |++. ++++ ..+||++++|.
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~it 582 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIA 582 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH-HHTTSEEEEEC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-HcCCCEEEEEe
Confidence 8888765 457999999999987 5542 2222 24689999874
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=4.8e-15 Score=137.46 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=89.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+++++.+||+++|+||||||||||+|+|+|+..+. .|.+.+ ..+++|++|++.+.+.+++..
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~------~G~I~~------------~~~i~~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT------EGKVEW------------DLTVAYKPQYIKAEYEGTVYE 436 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS------BSCCCC------------CCCEEEECSSCCCCCSSBHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC------ceEEEE------------eeEEEEEecCccCCCCCcHHH
Confidence 45567999999999999999999999999986432 222111 146899999864322212111
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
... .. ..........+.++++.+|+. ....+.++|+++++ ++..|+++|++||+. |++
T Consensus 437 ~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 437 LLS----KI-DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp HHH----HH-HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHH----hh-hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 110 00 000112234567888888886 34456789998765 467999999999987 544
Q ss_pred HHHHhhh-hcCceeEEee
Q psy6983 193 KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~-~R~r~~~~~~ 209 (210)
..++++. ++|..+++|.
T Consensus 512 ~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 4455554 4588998874
No 53
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.53 E-value=2.5e-14 Score=113.34 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKM 138 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~ 138 (210)
+|+|+|++||||||+++.|+..++..+..++..+ ..++..++.+...+.+.+|..++..++..+.........+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi 75 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEE------NPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENII 75 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGG------CTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccc------cHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEE
Confidence 6899999999999999999986554333343322 2234444333333444445333444444333222222356
Q ss_pred cccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHhhc-------cCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 139 MERSIHSARWELTQCQICSQAL---MYENASRWSLTFQTMV-------QKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 139 ~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~~~-------~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
.+++..+.. .+.......|.. ++..|.++...+...+ ..||++|||++ |++++++|+.+|+|+
T Consensus 76 ~d~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~--~~e~~~~Rl~~R~r~ 148 (205)
T 2jaq_A 76 FDRTLLEDP-IFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRV--STKTAISRIKKRGRS 148 (205)
T ss_dssp EESCTTTHH-HHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEEC--CHHHHHHHHHHHTCH
T ss_pred EEeccchhH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeC--CHHHHHHHHHHcCCh
Confidence 677665542 333322333433 4455555544332222 68999999999 999999999999885
No 54
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.53 E-value=1.7e-14 Score=114.72 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=75.5
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 51 ~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
|+++.+|++++|+||||||||||+++|+++.+ +.+.+........ ......++|+||++.+++.+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKR----------PGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCC----------TTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCc----------hhHhcCceEEeccHHHHHHHHhcC
Confidence 35568899999999999999999999999753 2222222221000 012356799999988877766443
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--h--HHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--M--YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~--~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
+.... ..............+.+.+..-... + ..... .+....+.++.++++.+ +++++.+|+.+|++.
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~----~~~~~~~~~~~v~~~~~--~~e~l~~Rl~~R~~~ 142 (205)
T 3tr0_A 71 AFLEH-ATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGAR----QIRELFPPALSIFILPP--SIEALRERLIKRRQD 142 (205)
T ss_dssp CEEEE-EEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHH----HHHHHCTTCEEEEEECS--CHHHHHHHHHTCTTS
T ss_pred cEEee-eeeecccccchHHHHHHHHHcCCeEEEEECHHHHH----HHHHhCCCcEEEEEECc--CHHHHHHHHHHhCCC
Confidence 32111 1111111111222344444432111 1 11111 12234556666666667 789999999999874
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.51 E-value=5.3e-15 Score=135.45 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=89.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHh---hhHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ---KTMLE 126 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l---~~~~~ 126 (210)
.++++++||+++|+||||||||||+++|+|+..+. .|.+.+. ...+++++|+... .+..+
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~------~G~i~~~-----------~~~i~~~~q~~~~~~~~tv~~ 349 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD------EGSVTPE-----------KQILSYKPQRIFPNYDGTVQQ 349 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS------BCCEESS-----------CCCEEEECSSCCCCCSSBHHH
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEEC-----------CeeeEeechhcccccCCCHHH
Confidence 35667999999999999999999999999986542 2222211 1467899887532 12222
Q ss_pred HHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH---
Q psy6983 127 VHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI--- 192 (210)
Q Consensus 127 ~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe--- 192 (210)
.+..... ... ......+.++++.+++. ....+.++|+++++ ++..|+++|++|||. |+.
T Consensus 350 ~l~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 350 YLENASK---DAL----STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp HHHHHCS---STT----CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHhhh---hcc----chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 2222110 000 01223467788888887 34456789998866 457999999999987 554
Q ss_pred ---HHHHhhhh-cCceeEEee
Q psy6983 193 ---KMMERSIH-SARFVLVIE 209 (210)
Q Consensus 193 ---~~l~Ri~~-R~r~~~~~~ 209 (210)
..++++.+ +|..+++|.
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vs 443 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIID 443 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEEe
Confidence 34566654 588888874
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.51 E-value=7.2e-15 Score=134.57 Aligned_cols=137 Identities=14% Similarity=0.027 Sum_probs=88.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+++++.+||+++|+||||||||||+|+|+|+..+. .|.+.+ ..+++|++|+....+.+++..
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~------~G~i~~------------~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT------EGKIEW------------DLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS------BCCCCC------------CCCEEEECSSCCCCCSSBHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CeEEEE------------CceEEEEecCCcCCCCCcHHH
Confidence 45567999999999999999999999999986432 221111 146899999864322111111
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH------
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI------ 192 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe------ 192 (210)
... .. ..........+.++++.+|+. ....+.++|++.++ ++..|+++|++|||. |+.
T Consensus 367 ~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 367 LLS----KI-DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHH----HH-HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHH----hh-hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 100 00 000111234567788888886 33446789998765 467999999999987 443
Q ss_pred HHHHhhh-hcCceeEEee
Q psy6983 193 KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 193 ~~l~Ri~-~R~r~~~~~~ 209 (210)
..++++. ++|..+++|.
T Consensus 442 ~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 4455554 4688998874
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=7.7e-15 Score=145.99 Aligned_cols=164 Identities=13% Similarity=0.069 Sum_probs=96.6
Q ss_pred ccCCCccccccCCCC-CCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchH
Q psy6983 29 SVPFCFLCASQNHNS-TGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLL 102 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l 102 (210)
.+.+.+++++|+... ....-.+|+++++||++||+||||||||||+++|+|+.++ .++|.++... + .
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~------~-~ 1102 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL------N-V 1102 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS------C-H
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC------C-H
Confidence 355667777775432 1223336777799999999999999999999999998653 3334433311 1 1
Q ss_pred HHHHhcccceeeeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHH-----hh--------hhHH
Q psy6983 103 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYE-----NA--------SRWS 169 (210)
Q Consensus 103 ~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~-----~~--------~~~s 169 (210)
. ..+++++||+|++.+++. ++..+...... ....+ + +...+.++..++.++. .| .++|
T Consensus 1103 ~---~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~-~~~~~---~-~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1103 Q---WLRAQLGIVSQEPILFDC-SIAENIAYGDN-SRVVS---Y-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp H---HHTTSCEEEESSCCCCSS-BHHHHHTCCCS-SCCCC---H-HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred H---HHHhceEEECCCCccccc-cHHHHHhccCC-CCCCC---H-HHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 2 224679999999976542 22223211110 00011 1 2233444444443111 11 3688
Q ss_pred HHHHh-------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 170 LTFQT-------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 170 ~~~~~-------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
++.++ ++..|+++|++|||. |++. .+++ ..+|+++++|-
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~-~~~~~tvi~is 1227 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIA 1227 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH-HSSSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-hCCCCEEEEEe
Confidence 88765 457999999999987 4432 2222 24588888873
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.4e-14 Score=130.42 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=92.4
Q ss_pred ccccccCCCCCC-ccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccc--cccc----cccCcchHHHHH
Q psy6983 34 FLCASQNHNSTG-KRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPV--NLWR----DVKGHNLLALMY 106 (210)
Q Consensus 34 ~~~~~~~~~~~~-~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~--~~~~----~~~~~~~l~~~~ 106 (210)
+++++|+.+... ..+ ..+++|++++|+||||||||||+|+|+|+..+.. |+.. ..|. .+.|..+...+.
T Consensus 82 ~~~~~Y~~~~~~l~~l---~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~-G~i~~~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 82 HVTHRYSANSFKLHRL---PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL-GRFDDPPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TEEEECSTTSCEEECC---CCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT-TTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred CeEEEECCCceeecCC---CCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC-ceEecccchhhhhheecChhhhhhhh
Confidence 456667655322 222 1579999999999999999999999999865321 2110 0000 111222111100
Q ss_pred h-ccccee--eeehhhHhhhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------
Q psy6983 107 E-NASRWS--LTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT------- 174 (210)
Q Consensus 107 ~-~~~~~~--~vfQ~~~l~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~------- 174 (210)
. ....+. +.+|.....+.. ..................+...+.++++.+|+. ......++|+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 158 KMLEDDIKAIIKPQYVDNIPRA--IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHHTSCCCEEECCCTTTHHHH--CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhchhhhhhhhhh--hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 0 001111 122221111100 000000000000011112335678899999987 33446788888765
Q ss_pred hccCccEEEEecCCC--CHH------HHHHhhhhcCceeEEee
Q psy6983 175 MVQKTMLEVHLDQPI--TPI------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~~~ 209 (210)
++..|+++|++||+. ||. ..++++.++|..+++|+
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 278 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEEC
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 457999999999988 664 46778888899999886
No 59
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.46 E-value=5.8e-14 Score=121.42 Aligned_cols=144 Identities=12% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC----cceeeccccccccccCcchHHHHHhcccc-----e--------eeeeh
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD----ITAYAEPVNLWRDVKGHNLLALMYENASR-----W--------SLTFQ 117 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~--------~~vfQ 117 (210)
.+|.+|+|.|+.||||||+++.|+..+. +.+..||...|..+.+++.+...+.++.+ + .+-.|
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~lQ 84 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ 84 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHHH
Confidence 3467999999999999999999998642 44556776444333344555555532111 1 12233
Q ss_pred hhHhh---hHHHHHHcCC----------CCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhc---cCccE
Q psy6983 118 TMVQK---TMLEVHLDQP----------ITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMV---QKTML 181 (210)
Q Consensus 118 ~~~l~---~~~~~~~~~~----------~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~---~~Pdl 181 (210)
..++. .+...+.... .+...+.||+..++...+.....+.|.+....+.++ ...+ ..||+
T Consensus 85 Llf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~~l----~~~~~~~~~PDL 160 (334)
T 1p6x_A 85 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALMAM----VATLPREPQGGN 160 (334)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHH----HTTCCCCCTTEE
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHHHH----HHHccCCCCCCE
Confidence 33321 1223332221 122367888888876556655555544433333222 1222 47999
Q ss_pred EEEecCCCCHHHHHHhhhhcCce
Q psy6983 182 EVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 182 ~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
+||||+ ||+++++||.+|||+
T Consensus 161 tIyLd~--~pe~~l~RI~~RgR~ 181 (334)
T 1p6x_A 161 IVVTTL--NVEEHIRRLRTRARI 181 (334)
T ss_dssp EEEEEC--CHHHHHHHHHHHSCT
T ss_pred EEEEEC--CHHHHHHHHHhcCCC
Confidence 999999 999999999999984
No 60
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.43 E-value=1.8e-13 Score=111.15 Aligned_cols=137 Identities=8% Similarity=-0.014 Sum_probs=76.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC--cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD--ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~--i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
+|+++++|++++|+||||||||||+++|+|+.+ +.+ +.+....... ....+.++|+||++.+++.+..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYF-SVSCTTRKKR---------EKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEE-CCCEECSCCC---------SSCCBTTTBEECCHHHHHHHHH
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEE-eecccCCCCC---------cccccCCeEEECCHHHHHHhhh
Confidence 566679999999999999999999999999762 333 3332211000 0112568999999988776542
Q ss_pred HHcCCCCc---ccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccC--cc-EEEEec-CCCCHHHHHHhhhh
Q psy6983 128 HLDQPITP---IKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQK--TM-LEVHLD-QPITPIKMMERSIH 200 (210)
Q Consensus 128 ~~~~~~~~---~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~--Pd-l~I~Ld-~~~~pe~~l~Ri~~ 200 (210)
........ ...+..+ ...+.++++....... ..++|++.+++... ++ ..++++ + +...+-+|+..
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~il--~~~lsggq~qR~~i~~~~~~~~ll~~~--~~~~Lde~~~~ 157 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKICLF--EMNINGVKQLKKSTHIKNALYIFIKPP--STDVLLSRLLT 157 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEEEE--EECHHHHHHHTTCSSCCSCEEEEEECS--CHHHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcEEE--EecHHHHHHHHHHhcCCCcEEEEEeCc--CHHHHHHHHHh
Confidence 11111100 0111112 1234555554433211 14678888776544 55 666775 5 55777777777
Q ss_pred cCce
Q psy6983 201 SARF 204 (210)
Q Consensus 201 R~r~ 204 (210)
|++.
T Consensus 158 ~d~~ 161 (218)
T 1z6g_A 158 RNTE 161 (218)
T ss_dssp TCCC
T ss_pred cCCC
Confidence 7764
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.42 E-value=8.2e-14 Score=134.60 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=93.1
Q ss_pred CccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccce
Q psy6983 33 CFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (210)
++++++|+....+++ +|+++.+|++++|+||||||||||+|+|++ +.+ .+.+.. ...++
T Consensus 439 ~~ls~~yg~~~iL~~--vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-G~i--~g~~~~----------------~~~~~ 497 (986)
T 2iw3_A 439 CEFSLAYGAKILLNK--TQLRLKRARRYGICGPNGCGKSTLMRAIAN-GQV--DGFPTQ----------------EECRT 497 (986)
T ss_dssp EEEEEEETTEEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHH-TCS--TTCCCT----------------TTSCE
T ss_pred eeEEEEECCEEeEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCc--CCCccc----------------cceeE
Confidence 455566655433433 566679999999999999999999999996 222 121111 01235
Q ss_pred eeeehhh-Hhh---hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh---hHHhhhhHHHHHHh-------hccC
Q psy6983 113 SLTFQTM-VQK---TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL---MYENASRWSLTFQT-------MVQK 178 (210)
Q Consensus 113 ~~vfQ~~-~l~---~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~---~~~~~~~~s~~~~~-------~~~~ 178 (210)
+|++|+. .++ +..+.+... ... . +.++.++++.+|+. ......++|+++++ ++..
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~------~~~--~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFES------GVG--T---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTT------CSS--C---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHh------hcC--H---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 7888764 222 233333220 011 1 35678899999984 23445689998865 4679
Q ss_pred ccEEEEecCCC--CH---HHHHHhhhhcCceeEEee
Q psy6983 179 TMLEVHLDQPI--TP---IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 179 Pdl~I~Ld~~~--~p---e~~l~Ri~~R~r~~~~~~ 209 (210)
|+++|++||+. |+ +.+++-|.++|..++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivS 602 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITIS 602 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999999987 44 345555655788888874
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.1e-13 Score=128.42 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=87.0
Q ss_pred ccccCCCC-----eEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh--
Q psy6983 50 SSVNNKKP-----FTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK-- 122 (210)
Q Consensus 50 ~~~~~~~g-----~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~-- 122 (210)
+++++.+| |+++|+||||||||||+++|+|+.... .|+.+. ...++|++|+....
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~~~-----------------~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIP-----------------KLNVSMKPQKIAPKFP 427 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCCCC-----------------SCCEEEECSSCCCCCC
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcCcc-----------------CCcEEEecccccccCC
Confidence 44444555 889999999999999999999986543 232211 14589999985321
Q ss_pred -hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--C
Q psy6983 123 -TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--T 190 (210)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~ 190 (210)
+..+.+.... .. .......+.++++.+++. ....+.++|+++++ ++..|++++++|||. |
T Consensus 428 ~tv~e~~~~~~------~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD 499 (608)
T 3j16_B 428 GTVRQLFFKKI------RG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499 (608)
T ss_dssp SBHHHHHHHHC------SS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred ccHHHHHHHHh------hc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 2222221110 00 111223466788888887 34456689998865 467999999999987 5
Q ss_pred HH------HHHHhhh-hcCceeEEee
Q psy6983 191 PI------KMMERSI-HSARFVLVIE 209 (210)
Q Consensus 191 pe------~~l~Ri~-~R~r~~~~~~ 209 (210)
+. ..++++. ++|..+++|.
T Consensus 500 ~~~~~~i~~ll~~l~~~~g~tviivt 525 (608)
T 3j16_B 500 SEQRIICSKVIRRFILHNKKTAFIVE 525 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 54 3455654 5689999885
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.38 E-value=4.3e-13 Score=122.78 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=82.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeecccc--cc----ccccCcchHH---HHHhcccceeeeehhhHhhhH
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVN--LW----RDVKGHNLLA---LMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~--~~----~~~~~~~~l~---~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+++||++||+||||||||||+|+|+|...+.. |+... .+ ..+.|.++.. ........+....|.....+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~-G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNF-GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCT-TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 58999999999999999999999999864321 11100 00 0122333211 111111122333333211110
Q ss_pred HHHHHcCCCCcccccc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh-------hccCccEEEEecCCC--CHH
Q psy6983 125 LEVHLDQPITPIKMME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT-------MVQKTMLEVHLDQPI--TPI 192 (210)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~-------~~~~Pdl~I~Ld~~~--~pe 192 (210)
+ .. ....+ ....+.+..+.++++.+|+. ....+.++|+++++ ++..|+++|++||+. |+.
T Consensus 101 ~------~~--~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~ 172 (538)
T 3ozx_A 101 F------LK--GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172 (538)
T ss_dssp T------CC--SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred h------cc--CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 0 00 00000 00111223466788888887 33446788988765 457999999999987 654
Q ss_pred ------HHHHhhhhcCceeEEee
Q psy6983 193 ------KMMERSIHSARFVLVIE 209 (210)
Q Consensus 193 ------~~l~Ri~~R~r~~~~~~ 209 (210)
..++++.+ |+.+++|+
T Consensus 173 ~~~~l~~~l~~l~~-g~tii~vs 194 (538)
T 3ozx_A 173 ERMNMAKAIRELLK-NKYVIVVD 194 (538)
T ss_dssp HHHHHHHHHHHHCT-TSEEEEEC
T ss_pred HHHHHHHHHHHHhC-CCEEEEEE
Confidence 35566654 88998885
No 64
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.36 E-value=4.1e-13 Score=117.54 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC---cceeeccccccccccCcchHHHHHhcccce---------eeee----hh
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD---ITAYAEPVNLWRDVKGHNLLALMYENASRW---------SLTF----QT 118 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~---i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~vf----Q~ 118 (210)
.+|.+|+|.|+.||||||+++.|+..+. +.+..||...|....|.+.+..++.++.++ ++.| |.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~~QL 126 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQI 126 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998653 566677765443333456677777654332 3222 22
Q ss_pred hHh------hhHHHHHHc--------CCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEE
Q psy6983 119 MVQ------KTMLEVHLD--------QPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVH 184 (210)
Q Consensus 119 ~~l------~~~~~~~~~--------~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~ 184 (210)
.++ ..++..+.. ...+...+.||+..++...+.......|.+....+..+...+. ....||++++
T Consensus 127 ~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~~l~~~~~-~~~ppdlt~L 205 (376)
T 1of1_A 127 TMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIP-PTLPGTNIVL 205 (376)
T ss_dssp HHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCC-CCCTTCEEEE
T ss_pred HHhccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHHHHHHhcc-cCCCCeEEEE
Confidence 233 112211111 0112345778888887545555544444333333333221110 1234678888
Q ss_pred ecCCCCHHHHHHhhhhcCce
Q psy6983 185 LDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 185 Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
+|. ||+++++||.+|||+
T Consensus 206 ldl--~pe~~l~RI~~RgR~ 223 (376)
T 1of1_A 206 GAL--PEDRHIDRLAKRQRP 223 (376)
T ss_dssp EEC--CHHHHHHHHHHSCCT
T ss_pred ecC--CHHHHHHHHHhcCCC
Confidence 999 999999999999984
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.35 E-value=1.3e-12 Score=126.26 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=38.9
Q ss_pred CCCccccccCCC--CCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 31 PFCFLCASQNHN--STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 31 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.+.+++++|+.. ..+++ +|+++.+|++++|+||||||||||+|+|+|+..+
T Consensus 673 ~v~nLs~~Y~g~~~~iL~d--VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 673 KVTNMEFQYPGTSKPQITD--INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEEEEEECCTTCSSCSEEE--EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred EEEeeEEEeCCCCceeeec--cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356666666532 23333 6677799999999999999999999999998653
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.35 E-value=4.6e-13 Score=125.33 Aligned_cols=58 Identities=14% Similarity=-0.025 Sum_probs=41.9
Q ss_pred HHHHHcchhh---HHhhhhHHHHHHhh-------ccCcc--EEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 152 QCQICSQALM---YENASRWSLTFQTM-------VQKTM--LEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 152 ~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~Pd--l~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
.+++.+|+.+ ...+.++|++++++ +..|+ +++++||+. || ...++++.++|.++++|+
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3477777752 35567899988664 45776 999999987 33 345667777899999986
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.34 E-value=8.3e-13 Score=106.04 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=43.5
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCC-cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
++++|++++|+||||||||||+++|+|+.. +.+.. .... .+.. ....+.++|+||++.+++.+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~-~~~~------~~~~---~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV-SATT------RAPR---PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECC-CEES------SCCC---TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcc-cccc------cCCc---ccccCCCeeEecCHHHHHHHHhc
Confidence 579999999999999999999999999864 32221 1111 0000 01235689999999888776643
No 68
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.34 E-value=1.4e-12 Score=112.58 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC---cceeeccccccccccCcchHHHHHhcccce---------eeeeh----hh
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD---ITAYAEPVNLWRDVKGHNLLALMYENASRW---------SLTFQ----TM 119 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~---i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~vfQ----~~ 119 (210)
++.+|+|.|+.||||||+++.|+..+. +.+..||...|....|++.+..++.+++++ ++.|+ .+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~qL~ 82 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQIT 82 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998653 556677765443333446677777654332 32222 22
Q ss_pred Hhhh---HHHHHHcC-----------CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEe
Q psy6983 120 VQKT---MLEVHLDQ-----------PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHL 185 (210)
Q Consensus 120 ~l~~---~~~~~~~~-----------~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~L 185 (210)
++.+ ....+... ..+...+.||+..++...+.......|-+....+..+...+. ....||+++++
T Consensus 83 fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~~l~~~~~-~~~ppdlt~ll 161 (331)
T 1e2k_A 83 MGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIP-PTLPGTNIVLG 161 (331)
T ss_dssp HHHHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCC-CCCTTCEEEEE
T ss_pred HHhhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHHHHHHhcc-cCCCCeEEEEE
Confidence 2211 01111111 122345778888887544555444444333333333221110 12356899999
Q ss_pred cCCCCHHHHHHhhhhcCce
Q psy6983 186 DQPITPIKMMERSIHSARF 204 (210)
Q Consensus 186 d~~~~pe~~l~Ri~~R~r~ 204 (210)
|. ||+++++||.+|||+
T Consensus 162 dl--~pe~~l~RI~~Rgr~ 178 (331)
T 1e2k_A 162 AL--PEDRHIDRLAKRQRP 178 (331)
T ss_dssp EC--CHHHHHHHHHHSCCT
T ss_pred cC--CHHHHHHHHHhcCCC
Confidence 99 999999999999984
No 69
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.32 E-value=1e-12 Score=112.62 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPI 133 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~ 133 (210)
+++|++++|+||||||||||+++|+|++.. ..+ . .++++++|+.++++. +...+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~------~~G------~----------~~v~~v~qd~~~~~~-t~~e~~~~ 143 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR------WDH------H----------PRVDLVTTDGFLYPN-AELQRRNL 143 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT------STT------C----------CCEEEEEGGGGBCCH-HHHHHTTC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc------cCC------C----------CeEEEEecCccCCcc-cHHHHHHH
Confidence 689999999999999999999999997532 111 1 468999999988776 55544321
Q ss_pred CcccccccchhhhHHHHHHHHHHcchh-hHHhhhhHHHHHHhh-------ccCc-----------------------cEE
Q psy6983 134 TPIKMMERSIHSARWELTQCQICSQAL-MYENASRWSLTFQTM-------VQKT-----------------------MLE 182 (210)
Q Consensus 134 ~~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~~~~~s~~~~~~-------~~~P-----------------------dl~ 182 (210)
....+.+...+...+.+.++.++.. ....+..+|+++++. +..| |..
T Consensus 144 --~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~ 221 (312)
T 3aez_A 144 --MHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFS 221 (312)
T ss_dssp --TTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEE
T ss_pred --HHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcE
Confidence 1111223333445667777776621 112344566665432 2334 555
Q ss_pred EEecCCCCHHHHHHhhhhc
Q psy6983 183 VHLDQPITPIKMMERSIHS 201 (210)
Q Consensus 183 I~Ld~~~~pe~~l~Ri~~R 201 (210)
||+++ +.+.+++|..+|
T Consensus 222 I~V~a--~~~~~~~R~i~R 238 (312)
T 3aez_A 222 LYVDA--RIEDIEQWYVSR 238 (312)
T ss_dssp EEEEE--CHHHHHHHHHHH
T ss_pred EEEEC--CHHHHHHHHHHH
Confidence 55555 777877777666
No 70
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.31 E-value=1.5e-12 Score=112.78 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=85.6
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHhcCCC----cceeeccccccccccCcchHHHHHhcc-----ccee--------eee
Q psy6983 55 KKPFTVFVEGNIGSGKTTFL-DYFNKSGD----ITAYAEPVNLWRDVKGHNLLALMYENA-----SRWS--------LTF 116 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLl-k~L~~~~~----i~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~--------~vf 116 (210)
.+|.+|+|.|+-||||||++ +.|+..+. +.+..||...|....+++.+...+... .++. .-.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e~ 89 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHF 89 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHHH
Confidence 44679999999999999999 99998764 567788877665544545555555422 1221 112
Q ss_pred hhhH------hhhHHHHHHcC----------CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCcc
Q psy6983 117 QTMV------QKTMLEVHLDQ----------PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTM 180 (210)
Q Consensus 117 Q~~~------l~~~~~~~~~~----------~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pd 180 (210)
|..+ +..++..+... ..+...+.||+..++...+.......|.++...+.++...+. .-..||
T Consensus 90 ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~~~L~~~~~-~~~~PD 168 (341)
T 1osn_A 90 QSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLP-AEPPGT 168 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCC-CCCSCC
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHHHHHHHhhh-cCCCCC
Confidence 2222 12222221111 111235788988888656655555555543333333322110 113699
Q ss_pred EEEEecCCCCHHHHHHhhhhcCce
Q psy6983 181 LEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 181 l~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
++||||. +|+++++||.+|||+
T Consensus 169 ltI~Ld~--~pe~~l~RI~~RgR~ 190 (341)
T 1osn_A 169 NLVVCTV--SLPSHLSRVSKRARP 190 (341)
T ss_dssp EEEEEEC--CHHHHHHHCC-----
T ss_pred eEEEEeC--CHHHHHHHHHhhCCC
Confidence 9999999 999999999999884
No 71
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.28 E-value=3.5e-12 Score=101.75 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=65.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC-cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD-ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQP 132 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~ 132 (210)
.++|++++|+|+|||||||++++|++.++ +.+.+.++.. ... ......+++||+....+.++.+.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~---------~~~--~~~~~~g~~~~~~~~~~~~~~~~~~- 93 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHS---------PEN--IATMQRGIPLTDEDRWPWLRSLAEW- 93 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSC---------HHH--HHHHHTTCCCCHHHHHHHHHHHHHH-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccccc---------HHH--HHHHhcCCCCCCcccccHHHHHHHH-
Confidence 46799999999999999999999998643 4444433321 000 1112458999987665554433221
Q ss_pred CCcccccccchhhhHHHHHHHHHH-cch-hhHHh-hhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 133 ITPIKMMERSIHSARWELTQCQIC-SQA-LMYEN-ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 133 ~~~~~~~~~s~~e~~~~~~~~L~~-~gl-~~~~~-~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
+...+.. ... .+... .......+.... .+..+|||++ |++++++|+.+|++
T Consensus 94 -----------------~~~~~~~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~--~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 94 -----------------MDARADAGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDG--PAEVIKGRMSKREG 147 (200)
T ss_dssp -----------------HHHHHHTTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEEC--CHHHHHHHHTTCSC
T ss_pred -----------------HHHHHhcCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeC--CHHHHHHHHHhccc
Confidence 0000000 000 00000 001111111122 3568899999 99999999998864
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.1e-13 Score=124.56 Aligned_cols=142 Identities=8% Similarity=-0.028 Sum_probs=84.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCcceee-ccccccccccCcchHHHHHhcccceeeeehhhHhhhH---H
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYA-EPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM---L 125 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~---~ 125 (210)
+++++++|++++|+||||||||||+|+|+|+.... .| ++ +.+++. .++.++++||+..+++. +
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~p----I~vdg~--------~~~~i~~vpq~~~l~~~~~~~ 197 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQP----LYINLD--------PQQPIFTVPGCISATPISDIL 197 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCC----EEEECC--------TTSCSSSCSSCCEEEECCSCC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCcee----EEEcCC--------ccCCeeeeccchhhccccccc
Confidence 67788999999999999999999999999985221 12 11 112221 12678999998754332 2
Q ss_pred HHHHcCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHh---------hccCccE----EEEec-CCC--
Q psy6983 126 EVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT---------MVQKTML----EVHLD-QPI-- 189 (210)
Q Consensus 126 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~---------~~~~Pdl----~I~Ld-~~~-- 189 (210)
+...+. ........ ......+.++++.+|+..+....++|+++++ ++..|++ +|++| ++.
T Consensus 198 tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 198 DAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp CTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred chhhhh-cccccccC---cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 221111 10000000 0111224456667777644446778887643 5679999 99999 443
Q ss_pred CH-HHHHHhhh-hcCceeEEe
Q psy6983 190 TP-IKMMERSI-HSARFVLVI 208 (210)
Q Consensus 190 ~p-e~~l~Ri~-~R~r~~~~~ 208 (210)
|+ ...+.++. +.++.+++|
T Consensus 274 D~~~~~l~~l~~~~~~tviiV 294 (460)
T 2npi_A 274 DENLAELHHIIEKLNVNIMLV 294 (460)
T ss_dssp CSSCHHHHHHHHHTTCCEEEE
T ss_pred ChhHHHHHHHHHHhCCCEEEE
Confidence 32 34444544 447777776
No 73
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.26 E-value=6.6e-12 Score=101.39 Aligned_cols=132 Identities=17% Similarity=0.072 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC----CcceeeccccccccccCcchHHHHHhcccceeeeehhh---HhhhHHHHHH
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM---VQKTMLEVHL 129 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~---~l~~~~~~~~ 129 (210)
|.+|+|+|+.||||||+++.|+..+ ++....+|-.... ...+.........+. ++.. ++..+...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~----g~~ir~~l~~~~~~~--~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPT----GEEIRKIVLEGNDMD--IRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHH----HHHHHHHHHSSCCCC--HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChH----HHHHHHHHhcccCCC--HHHHHHHHHHHHHHHHH
Confidence 5699999999999999999998653 2333344422110 011222222222222 2221 1123333222
Q ss_pred cC-----CCCcccccccchhhhHHHHHHHHHHc---chhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhc
Q psy6983 130 DQ-----PITPIKMMERSIHSARWELTQCQICS---QALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHS 201 (210)
Q Consensus 130 ~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~---gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R 201 (210)
.. ..+...+.||...+. +.++. |+ +.....++..... -...||++||||+ ||+++++|+.+|
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~------~ayq~~~~~~-~~~~~~~l~~~~~-~~~~PDl~i~Ld~--~~e~~~~Ri~~r 145 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSS------LAYQGYARGI-GVEEVRALNEFAI-NGLYPDLTIYLNV--SAEVGRERIIKN 145 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHH------HHHTTTTTSS-CHHHHHHHHHHHH-TTCCCSEEEEEEC--CHHHHHHHHHC-
T ss_pred HHHHHHHHcCCEEEecCcccch------HHHHhccccc-hHHHHHHHHHHHh-cCCCCCEEeeeCC--CHHHHHHHHHhc
Confidence 21 112234455543332 22211 11 2222222222211 2358999999999 999999999999
Q ss_pred Cce
Q psy6983 202 ARF 204 (210)
Q Consensus 202 ~r~ 204 (210)
++.
T Consensus 146 ~~~ 148 (205)
T 4hlc_A 146 SRD 148 (205)
T ss_dssp ---
T ss_pred CCc
Confidence 874
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.25 E-value=3e-12 Score=109.27 Aligned_cols=146 Identities=13% Similarity=0.013 Sum_probs=79.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhH-hhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV-QKT 123 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~-l~~ 123 (210)
+++++++|++++|+||||||||||++.|++++ .+.+.+.++..... .+.+.. +..+..+++++|++. +++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a---~~ql~~-~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA---SDQLEI-WAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH---HHHHHH-HHHHHTCEEECCC--CCCH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhH---HHHHHH-HHHhcCceEEEecCCccCH
Confidence 56778999999999999999999999999973 34444444321000 000111 222356899999877 665
Q ss_pred HHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHH----HHHHhhccCcc--EEEEecCCC--CHHH
Q psy6983 124 MLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWS----LTFQTMVQKTM--LEVHLDQPI--TPIK 193 (210)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s----~~~~~~~~~Pd--l~I~Ld~~~--~pe~ 193 (210)
......+.........+ ..+++.+|+. ....+.++| ...+.++..|+ +++.+ +++ ++..
T Consensus 169 ~~~v~e~l~~~~~~~~d----------~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----------EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred HHHHHHHHHHHHHcCCc----------chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 44333222100000000 0011222222 112223333 12233456788 76665 665 7777
Q ss_pred HHHhhhh-cCceeEEeeC
Q psy6983 194 MMERSIH-SARFVLVIEK 210 (210)
Q Consensus 194 ~l~Ri~~-R~r~~~~~~~ 210 (210)
.++++.+ .+..++++.+
T Consensus 238 ~~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 238 QAREFNEVVGITGLILTK 255 (302)
T ss_dssp HHHHHHHHTCCCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 7788774 5888888754
No 75
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.25 E-value=2.6e-12 Score=104.59 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=57.7
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHh-cCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFN-KSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~-~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
.+|+++++|++++|+||||||||||+++|+ ++......+........-.| ......+.||+...+..+..
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g---------~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKG---------EKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTT---------CCBTTTBEECCHHHHHHHHH
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcc---------ccCCCeEEEecHHHhhhhhh
Confidence 367778999999999999999999999999 98643222222211000000 01234578887766655443
Q ss_pred HHcCCCC---cccccccchhhhHHHHHHHHHHcchh----hHHhhhhHHHHHHhhc-cCccEEEEecCCCCHHHHHHhhh
Q psy6983 128 HLDQPIT---PIKMMERSIHSARWELTQCQICSQAL----MYENASRWSLTFQTMV-QKTMLEVHLDQPITPIKMMERSI 199 (210)
Q Consensus 128 ~~~~~~~---~~~~~~~s~~e~~~~~~~~L~~~gl~----~~~~~~~~s~~~~~~~-~~Pdl~I~Ld~~~~pe~~l~Ri~ 199 (210)
....... ....+..+... +.+.+..-... +...... +...+ ..+..++...+ +++++.+|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~vild~~~~g~~~----~~~~~~~~~~~v~v~~~--~~~~l~~Rl~ 159 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKN----LEDNVDKGVSTLLVIDWQGAFK----FMEMMREHVVSIFIMPP--SMEELRRRLC 159 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTT----HHHHHHHTCEEEEECCHHHHHH----HHHHSGGGEEEEEEECS--CHHHHHHC--
T ss_pred cCceehhhhhccccCCCCHHH----HHHHHHcCCeEEEEcCHHHHHH----HHHhcCCCeEEEEEECC--cHHHHHHHHH
Confidence 2221100 00111112121 22333321111 1111111 12233 34445555677 7899999999
Q ss_pred hcCce
Q psy6983 200 HSARF 204 (210)
Q Consensus 200 ~R~r~ 204 (210)
+|++.
T Consensus 160 ~R~~~ 164 (231)
T 3lnc_A 160 GRRAD 164 (231)
T ss_dssp -----
T ss_pred HcCCC
Confidence 99753
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.23 E-value=5.9e-12 Score=98.35 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=27.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+|+++++|++++|+||||||||||++++.+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 577789999999999999999999998653
No 77
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.20 E-value=3.7e-11 Score=97.90 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=71.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHH----
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVH---- 128 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~---- 128 (210)
.++|++++|+||||||||||+++|+|..+. .+.+. +.+.+.+... .....++|+||+..+++.+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~-----v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVS-----VSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEEC-----CCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEE-----EEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHH
Confidence 588999999999999999999999998653 12221 1111111100 1224689999998888776552
Q ss_pred HcCCCCcccccccchhhhHHHHHHHHHHcchh--h--HHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 129 LDQPITPIKMMERSIHSARWELTQCQICSQAL--M--YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 129 ~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~--~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.+.... ...+..+ ...+.+++..-.+. + .....++ ...+...-.+++.-. +++.+.+|+..||.
T Consensus 85 E~~~~~-~~~yg~~----~~~v~~~l~~G~illLDLD~~~~~~i----~~~l~~~~tI~i~th--~~~~l~~Rl~~rG~ 152 (219)
T 1s96_A 85 EHAEVF-GNYYGTS----REAIEQVLATGVDVFLDIDWQGAQQI----RQKMPHARSIFILPP--SKIELDRRLRGRGQ 152 (219)
T ss_dssp EEEEET-TEEEEEE----HHHHHHHHTTTCEEEEECCHHHHHHH----HHHCTTCEEEEEECS--SHHHHHHHHHTTSC
T ss_pred HHHHHH-hccCCCC----HHHHHHHHhcCCeEEEEECHHHHHHH----HHHccCCEEEEEECC--CHHHHHHHHHHcCC
Confidence 221110 1111212 22344555432222 2 2222222 223334444555566 78889999988884
No 78
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.19 E-value=2.6e-12 Score=102.81 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++|++++|+||||||||||+++|++++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999999974
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.17 E-value=2.5e-12 Score=104.11 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhh--HhhhHH-HHHHcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM--VQKTML-EVHLDQ 131 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~--~l~~~~-~~~~~~ 131 (210)
++|++++|+||||||||||+++|+|+ .+. .|+. .. .... .+. ...++.++|+||++ .+.... ......
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I-~~-~~~~-~~~----~~~~~~ig~v~q~~~enl~~~~~~~~~~~ 90 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQV-SR-IILT-RPA----VEAGEKLGFLPGTLNEKIDPYLRPLHDAL 90 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSC-SE-EEEE-ECS----CCTTCCCCSSCC------CTTTHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCee-ee-EEec-CCc----hhhhcceEEecCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999997 421 1111 10 0000 000 01235789999986 110000 000000
Q ss_pred CCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCC-CHHHH---HHhhhhcCceeE
Q psy6983 132 PITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPI-TPIKM---MERSIHSARFVL 206 (210)
Q Consensus 132 ~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~-~pe~~---l~Ri~~R~r~~~ 206 (210)
.. ......+.++++. |+.+ .+....+++++..|+++|++||+. ..+.+ +.++ ++|+.++
T Consensus 91 -------~~---~~~~~~~~~~l~~-glGq----~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~~g~tii 153 (208)
T 3b85_A 91 -------RD---MVEPEVIPKLMEA-GIVE----VAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-GFGSKMV 153 (208)
T ss_dssp -------TT---TSCTTHHHHHHHT-TSEE----EEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-CTTCEEE
T ss_pred -------HH---hccHHHHHHHHHh-CCch----HHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-cCCCEEE
Confidence 00 0111234555555 4411 111223455788999999999876 33333 3444 3566666
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.16 E-value=1.7e-11 Score=107.05 Aligned_cols=147 Identities=13% Similarity=0.008 Sum_probs=79.6
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhH-hh
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMV-QK 122 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~-l~ 122 (210)
.+++++++|++++|+||||||||||++.|++++ .+.+.+.++..... .+.+. .+..+..+++++|++. ++
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a---~eql~-~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAA---SDQLE-IWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHH---HHHHH-HHHHHHTCEEECCSSSSCC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccch---hHHHH-HHHHhcCeEEEEecccccC
Confidence 366778999999999999999999999999973 34444444321000 00011 1122356899999876 55
Q ss_pred hHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHH----HHHHhhccCcc--EEEEecCCC--CHH
Q psy6983 123 TMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWS----LTFQTMVQKTM--LEVHLDQPI--TPI 192 (210)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s----~~~~~~~~~Pd--l~I~Ld~~~--~pe 192 (210)
+......+.......-.+. .+++.+|+. ....+.++| ...+.++..|+ ++|.+ +++ ++.
T Consensus 225 p~~tv~e~l~~~~~~~~d~----------~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDV----------VLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSE----------EEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhhhHHHHHHHHHhCCCHH----------HHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 5433322211000000000 011112222 111222333 22334567888 76655 655 777
Q ss_pred HHHHhhhh-cCceeEEeeC
Q psy6983 193 KMMERSIH-SARFVLVIEK 210 (210)
Q Consensus 193 ~~l~Ri~~-R~r~~~~~~~ 210 (210)
...++..+ .+..++++.+
T Consensus 294 ~~~~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 294 PQAREFNEVVGITGLILTK 312 (359)
T ss_dssp HHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHHhcCCeEEEEec
Confidence 77777765 4888888754
No 81
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.14 E-value=6.3e-11 Score=97.01 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+|.+|+|+|++||||||+++.|+..+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999864
No 82
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.14 E-value=2.6e-11 Score=113.48 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHcchh---hHHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--CHH------HHHHhhhhcCceeEE
Q psy6983 149 ELTQCQICSQAL---MYENASRWSLTFQTM-------VQK---TMLEVHLDQPI--TPI------KMMERSIHSARFVLV 207 (210)
Q Consensus 149 ~~~~~L~~~gl~---~~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--~pe------~~l~Ri~~R~r~~~~ 207 (210)
...+.+..+|+. ....+.++|++++++ +.. |++++++|||. ||. ..++++.++|.++++
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 455677788875 234567899998764 334 46999999987 443 456778778999999
Q ss_pred ee
Q psy6983 208 IE 209 (210)
Q Consensus 208 ~~ 209 (210)
|+
T Consensus 602 vt 603 (670)
T 3ux8_A 602 IE 603 (670)
T ss_dssp EC
T ss_pred Ee
Confidence 86
No 83
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.13 E-value=3.1e-11 Score=98.81 Aligned_cols=134 Identities=14% Similarity=-0.004 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC------cce-eeccccccccccCcchHHHHHhcccceeeeehh-hHhhhHHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD------ITA-YAEPVNLWRDVKGHNLLALMYENASRWSLTFQT-MVQKTMLE 126 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~------i~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~-~~l~~~~~ 126 (210)
.+|.+|+|+|++||||||+++.|+..+. +.. ..+|..... | ..+..++.....+....|. .++..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~---g-~~ir~~l~~~~~~~~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL---N-ESVRNLLFKAQGLDSLSELLFFIAMRRE 94 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH---H-HHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH---H-HHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999986532 222 234422110 0 1122233322222222222 12334444
Q ss_pred HHHcC-----CCCcccccccchhhhHHHHHHHHHHc-chh-hHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhh
Q psy6983 127 VHLDQ-----PITPIKMMERSIHSARWELTQCQICS-QAL-MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSI 199 (210)
Q Consensus 127 ~~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~-gl~-~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~ 199 (210)
.+... ..+...+.||...+.. .++- +.. ++..+.++..++.. +.||++||||+ ||+++++|+
T Consensus 95 ~~~~~I~paL~~g~~VI~DRy~~S~~------Ayq~~~~g~~~~~~~~l~~~~~~--~~PDl~I~Ldv--~~e~~~~Ri- 163 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDRFIDSTI------AYQGYGQGIDCSLIDQLNDLVID--VYPDITFIIDV--DINESLSRS- 163 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHH------HHHTTTTCCCHHHHHHHHHHHCS--SCCSEEEEEEC--C---------
T ss_pred HHHHHHHHHHhcCCeEEEccchhhHH------HhccccCCccHHHHHHHHHHhhc--CCCCeEEEEeC--CHHHHHHHh-
Confidence 44331 1223455666554431 1211 111 34444444443333 79999999999 999999999
Q ss_pred hcCc
Q psy6983 200 HSAR 203 (210)
Q Consensus 200 ~R~r 203 (210)
+|+|
T Consensus 164 ~rdr 167 (223)
T 3ld9_A 164 CKNG 167 (223)
T ss_dssp ----
T ss_pred ccCc
Confidence 7766
No 84
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.12 E-value=9e-11 Score=90.24 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=26.1
Q ss_pred hhccCccEEEEecCCCCHHHHHHhhhhcCcee
Q psy6983 174 TMVQKTMLEVHLDQPITPIKMMERSIHSARFV 205 (210)
Q Consensus 174 ~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~~ 205 (210)
.....||++|||++ |++++++|+.+|+|..
T Consensus 90 ~~~~~~~~~i~l~~--~~e~~~~R~~~r~r~~ 119 (173)
T 3kb2_A 90 DKIKAKAKVVYLHA--DPSVIKKRLRVRGDEY 119 (173)
T ss_dssp HHHTTTEEEEEEEC--CHHHHHHHHHHHSCSC
T ss_pred ccCCCCCEEEEEeC--CHHHHHHHHHhcCCcc
Confidence 34568999999999 9999999999998753
No 85
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.11 E-value=2.9e-10 Score=88.18 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|++++|+|+|||||||+++.|++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5689999999999999999999998643
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.08 E-value=8e-11 Score=96.80 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=25.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+++++|++++|+||||||||||+++|++.+
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55667999999999999999999999999964
No 87
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.07 E-value=2.4e-10 Score=92.73 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehh---hHhhhHHHH
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQT---MVQKTMLEV 127 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~---~~l~~~~~~ 127 (210)
+|.+|+|.|++||||||+++.|+..+ .+....+|-... + | ..+..+........+-++. .++..+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~--~-g-~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~ 80 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTP--L-A-ERIRELLLAPSDEPMAADTELLLMFAARAQH 80 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSH--H-H-HHHHHHHHSCCSSCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCH--H-H-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999997643 233333442110 0 0 1133333322211122222 223344443
Q ss_pred HHcC-----CCCcccccccchhhhHHHHHHHHHHc---chhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhh
Q psy6983 128 HLDQ-----PITPIKMMERSIHSARWELTQCQICS---QALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSI 199 (210)
Q Consensus 128 ~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~---gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~ 199 (210)
+... ..+...+.||...+. +.+.. |+ +...+..+..+ ..-.+.||++||||+ ||+++++|+.
T Consensus 81 ~~~~i~p~l~~g~~Vi~DRy~~S~------~ayq~~~~g~-~~~~~~~l~~~-~~~~~~PDlvi~Ld~--~~e~~~~Ri~ 150 (213)
T 4edh_A 81 LAGVIRPALARGAVVLCDRFTDAT------YAYQGGGRGL-PEARIAALESF-VQGDLRPDLTLVFDL--PVEIGLARAA 150 (213)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHH------HHHTTTTTCC-CHHHHHHHHHH-HHTTCCCSEEEEEEC--CHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEECccHhHH------HHHhhhccCC-CHHHHHHHHHH-HhcCCCCCEEEEEeC--CHHHHHHHHH
Confidence 3222 112234555544332 22221 22 12122222211 112579999999999 9999999999
Q ss_pred hcCc
Q psy6983 200 HSAR 203 (210)
Q Consensus 200 ~R~r 203 (210)
+|++
T Consensus 151 ~R~~ 154 (213)
T 4edh_A 151 ARGR 154 (213)
T ss_dssp CCSS
T ss_pred hcCC
Confidence 9964
No 88
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.07 E-value=1.8e-10 Score=91.28 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
++.+|++++|+|||||||||++++|++.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999999986
No 89
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.05 E-value=2.5e-10 Score=90.71 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcc-eeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCC-CC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDIT-AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQP-IT 134 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~-~~ 134 (210)
..+|+|+|++||||||+++.|++.++.. +....+.. . .. ......+..+|+......+..+.... ..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~------~---~~--~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 86 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHP------P---EN--IRKMSEGIPLTDDDRWPWLAAIGERLASR 86 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCC------H---HH--HHHHHHTCCCCHHHHHHHHHHHHHHHTSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcc------h---hh--HHHHhcCCCCCchhhHHHHHHHHHHHhcC
Confidence 4589999999999999999999864432 22222210 0 00 00112355666654333333222211 11
Q ss_pred cccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 135 PIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 135 ~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
...+.+..... ..+...+....+.|+++|||++ |++++++|+.+|++
T Consensus 87 ~~vivd~~~~~--------------------~~~~~~l~~~~~~~~~vi~l~~--~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 87 EPVVVSCSALK--------------------RSYRDKLRESAPGGLAFVFLHG--SESVLAERMHHRTG 133 (202)
T ss_dssp SCCEEECCCCS--------------------HHHHHHHHHTSTTCCEEEEEEC--CHHHHHHHHHHHHS
T ss_pred CCEEEECCCCC--------------------HHHHHHHHHhcCCCeEEEEEeC--CHHHHHHHHHHhhc
Confidence 11222211100 0111122223456889999999 99999999999864
No 90
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=1.3e-11 Score=99.11 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++|++++|+||||||||||+++|++++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999753
No 91
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=4.7e-11 Score=100.26 Aligned_cols=130 Identities=11% Similarity=0.022 Sum_probs=63.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----cceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHHcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD-----ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPI 133 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~~~~~ 133 (210)
.++|+||||||||||+++|+|... +.+.|+++... ...+.+++++|+..+++.+++..+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-------------~~~~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-------------VEIKAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-------------CSCCEEEESCC----CCEEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-------------eeeeeeEEEeecCCCcCCceEEechhh
Confidence 589999999999999999999743 33333332210 123568999998766555444333221
Q ss_pred CcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHHHhhcc--Ccc-EEEEecCCC---CH--HHHHHhhhhcCcee
Q psy6983 134 TPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQ--KTM-LEVHLDQPI---TP--IKMMERSIHSARFV 205 (210)
Q Consensus 134 ~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~~~~~~--~Pd-l~I~Ld~~~---~p--e~~l~Ri~~R~r~~ 205 (210)
... . ........+.+.+.. -.......++|+++++.+. +.+ .+++||+|. +| ...++++.++ .++
T Consensus 71 g~~-~---~~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~v 143 (270)
T 3sop_A 71 GDQ-I---NNENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNI 143 (270)
T ss_dssp -CC-S---BCTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEE
T ss_pred hhh-c---ccHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcE
Confidence 110 0 011111122222220 0122234466777655421 111 245566553 22 4567888877 676
Q ss_pred EEe
Q psy6983 206 LVI 208 (210)
Q Consensus 206 ~~~ 208 (210)
++|
T Consensus 144 I~V 146 (270)
T 3sop_A 144 IPV 146 (270)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 92
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.03 E-value=9.8e-11 Score=96.05 Aligned_cols=132 Identities=17% Similarity=0.080 Sum_probs=65.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC---------cceeeccccccccccCcchHHHHHhcccceeeeehh---hHh
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD---------ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQT---MVQ 121 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~---------i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~---~~l 121 (210)
..+|.+|+|+|++||||||+++.|+..+. +....+|-... + | ..+....... .+.+.. .++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~--~-g-~~ir~~l~~~---~~~~~~~~llf~ 94 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTR--L-G-ETLREILLNQ---PMDLETEALLMF 94 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSH--H-H-HHHHHHHHHS---CCCHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCCh--H-H-HHHHHHHHcC---CCCHHHHHHHHH
Confidence 35788999999999999999999986532 22233331110 0 1 1122222211 122222 122
Q ss_pred hhHHHHHHcC-----CCCcccccccchhhhHHHHHHHHHH---cchhhHHhhhhHHHHHHhhccCccEEEEecCCCCHHH
Q psy6983 122 KTMLEVHLDQ-----PITPIKMMERSIHSARWELTQCQIC---SQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIK 193 (210)
Q Consensus 122 ~~~~~~~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~---~gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~pe~ 193 (210)
..+...+... ..+...+.||...+. +.++ .|+ +...+.++..+. .-.+.||++||||+ ||++
T Consensus 95 a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~------~ayq~~~~gl-~~~~~~~l~~~~-~~~~~PDl~I~Ldv--~~e~ 164 (227)
T 3v9p_A 95 AGRREHLALVIEPALARGDWVVSDRFTDAT------FAYQGGGRGL-PRDKLEALERWV-QGGFQPDLTVLFDV--PPQI 164 (227)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHH------HHHHTTTTCC-CHHHHHHHHHHH-HTTCCCSEEEEEEC--CSSC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccHhHH------HHHhhhccCC-CHHHHHHHHHHH-hcCCCCCEEEEEeC--CHHH
Confidence 3444333221 122335556655443 2222 122 111112221111 12579999999999 9999
Q ss_pred HHHhhhhcC
Q psy6983 194 MMERSIHSA 202 (210)
Q Consensus 194 ~l~Ri~~R~ 202 (210)
+++|+.+|+
T Consensus 165 ~~~Ri~~R~ 173 (227)
T 3v9p_A 165 ASARRGAVR 173 (227)
T ss_dssp GGGTTTCCC
T ss_pred HHHHHHhcc
Confidence 999999986
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.02 E-value=1.9e-10 Score=98.18 Aligned_cols=67 Identities=16% Similarity=0.016 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTML 125 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~ 125 (210)
++|++++|+||||||||||++.|++++ .+.+.+.++..... ...+..+ ..+..+++++|.+.+++..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a---~~ql~~~-~~~~~i~~v~q~~~~~p~~ 171 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAG---GTQLSEW-GKRLSIPVIQGPEGTDSAA 171 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTT---THHHHHH-HHHHTCCEECCCTTCCHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhH---HHHHHHH-HHhcCceEEEeCCCCCHHH
Confidence 378999999999999999999999873 35555554432100 0112222 1235689999987665544
No 94
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.02 E-value=4.7e-10 Score=91.05 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=24.2
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.+.||++||||+ ||+++++|+.+|++
T Consensus 130 ~~~PDl~i~Ldv--~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 130 DFRPDLTLYLDV--TPEVGLKRARARGE 155 (213)
T ss_dssp TCCCSEEEEEEC--CHHHHHHHHHHHSS
T ss_pred CCCCCEEEEEeC--CHHHHHHHHHhcCC
Confidence 569999999999 99999999999975
No 95
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.02 E-value=1.6e-09 Score=86.40 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.6
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+++|++|+|+|+|||||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35889999999999999999999999975
No 96
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.01 E-value=2.7e-10 Score=89.77 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
|++++|+||||||||||+++|+++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999999754
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.6e-10 Score=91.90 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=25.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+.+.+|++|+|+|++||||||+++.|++.++.
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5566788999999999999999999999986543
No 98
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.99 E-value=6e-10 Score=91.86 Aligned_cols=134 Identities=21% Similarity=0.098 Sum_probs=64.1
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----C-cceeeccccccccccCcchHHHHHh----cccceeeeehhh---
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----D-ITAYAEPVNLWRDVKGHNLLALMYE----NASRWSLTFQTM--- 119 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~-i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~vfQ~~--- 119 (210)
..-+|.+|+|+|++||||||+++.|+..+ . .....+|- +.++-...+. ....-.+.++.-
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-------~t~~g~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-------GTLLAEKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-------SSHHHHHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-------CCHHHHHHHHHHhhCCCcccCCHHHHHHH
Confidence 34568899999999999999999998653 2 22233331 1222222221 111112222221
Q ss_pred HhhhHHHHHHcC-----CCCcccccccchhhhHHHHHHHHHHc---chhhHHhhhhHHHHHHhhccCccEEEEecCCCCH
Q psy6983 120 VQKTMLEVHLDQ-----PITPIKMMERSIHSARWELTQCQICS---QALMYENASRWSLTFQTMVQKTMLEVHLDQPITP 191 (210)
Q Consensus 120 ~l~~~~~~~~~~-----~~~~~~~~~~s~~e~~~~~~~~L~~~---gl~~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~~p 191 (210)
++..+...+... ..+...+.||...+. +.++. |+ +...+..+..+.. -.+.||++||||+ ||
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~------~AYq~~~rgl-~~~~i~~l~~~~~-~~~~PDlvi~Ldv--~~ 165 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMSS------QAYQGGGRQI-APSTMQSLKQTAL-GDFKPDLTLYLDI--DP 165 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHH------HHHTTTTTCC-CHHHHHHHHHHHH-TTCCCSEEEEEEC--CH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecchH------HhhhhhccCC-CHHHHHHHHHHHh-cCCCCCEEEEEeC--CH
Confidence 112333333221 112334555544443 22221 11 2222222222211 2479999999999 99
Q ss_pred HHHHHhhhhcCc
Q psy6983 192 IKMMERSIHSAR 203 (210)
Q Consensus 192 e~~l~Ri~~R~r 203 (210)
+++++|+.+|++
T Consensus 166 e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 166 KLGLERARGRGE 177 (236)
T ss_dssp HHHHHC-----C
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.98 E-value=3.2e-10 Score=89.38 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhh
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~ 119 (210)
.++|+||||||||||+++|+|+..+.+.|....... .. ...++++|++|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~-------~~---~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR-------DP---ETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhc-------cc---cccceeEEEeecC
Confidence 589999999999999999999876665554332110 00 1125789999975
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.98 E-value=1.3e-10 Score=94.56 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+++|++++|+||||||||||+++|++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999999999993
No 101
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=4.5e-10 Score=90.19 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++|++++|+||||||||||++.|++..+
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999999864
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.96 E-value=2e-10 Score=104.65 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=73.6
Q ss_pred ccc-cCCCCeEEEEEcCCCCcHHHHHHH--HhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhHh
Q psy6983 50 SSV-NNKKPFTVFVEGNIGSGKTTFLDY--FNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ 121 (210)
Q Consensus 50 ~~~-~~~~g~~i~IiG~sGsGKSTLlk~--L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l 121 (210)
+++ .+.+|++++|+||||||||||+++ ++|.. .+.+.+++. ........+.+||+||++..
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-----------~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-----------PQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-----------HHHHHHHHGGGTCCHHHHHH
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-----------HHHHHHHHHHcCCChHHhhc
Confidence 455 669999999999999999999999 56753 233333331 12222334678999998653
Q ss_pred hhHHHHHHcCCCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhhccCccEEEEecCCC-------CH-
Q psy6983 122 KTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTMVQKTMLEVHLDQPI-------TP- 191 (210)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~-------~p- 191 (210)
... +.. ..... . .. ..+++..+++. .......+|++ .|++++.++++. |+
T Consensus 100 ~~~---l~~-----~~~~~-~-~~----~~~~l~~~~l~~~~~~~~~~LS~g------~~~~lilDe~t~~~~~~~lD~~ 159 (525)
T 1tf7_A 100 EGK---LFI-----LDASP-D-PE----GQEVVGGFDLSALIERINYAIQKY------RARRVSIDSVTSVFQQYDASSV 159 (525)
T ss_dssp TTS---EEE-----EECCC-C-SS----CCSCCSSHHHHHHHHHHHHHHHHH------TCSEEEEECSTTTSTTTCCHHH
T ss_pred cCc---EEE-----EecCc-c-cc----hhhhhcccCHHHHHHHHHHHHHHc------CCCEEEECCHHHHHHhcCCHHH
Confidence 210 000 00000 0 00 01122333333 12233455553 688988888864 12
Q ss_pred -----HHHHHhhhhcCceeEEee
Q psy6983 192 -----IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 192 -----e~~l~Ri~~R~r~~~~~~ 209 (210)
...+++++++|.++++++
T Consensus 160 ~~~~l~~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 160 VRRELFRLVARLKQIGATTVMTT 182 (525)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 335667778899998875
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.90 E-value=2.1e-09 Score=86.28 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=26.5
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-+++|++++|+||||||||||+++|++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999853
No 104
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.90 E-value=2.5e-09 Score=84.00 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=21.0
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
...||++|||++ ||+++++|+.+|+|
T Consensus 119 ~~~~d~vi~l~~--~~e~~~~Rl~~R~~ 144 (197)
T 2z0h_A 119 GLIPDLTFYIDV--DVETALKRKGELNR 144 (197)
T ss_dssp TCCCSEEEEEEC--CHHHHHHHC---CC
T ss_pred CCCCCEEEEEeC--CHHHHHHHHhccCc
Confidence 458999999999 99999999999976
No 105
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.89 E-value=2.6e-09 Score=85.94 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+|+|+|+|||||||+++.|++.++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998654
No 106
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.89 E-value=2.4e-10 Score=93.08 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc--ceeeccccccccccCcch---HHHHHhccc-ce-eeeehhhHhhhHHH-
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI--TAYAEPVNLWRDVKGHNL---LALMYENAS-RW-SLTFQTMVQKTMLE- 126 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i--~~~~~~~~~~~~~~~~~~---l~~~~~~~~-~~-~~vfQ~~~l~~~~~- 126 (210)
.+|.+|++.|++||||||+++.|+..+.. ....+|.. +.++ +........ .+ ....+..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~------~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~ 76 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPER------STRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEI 76 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCT------TSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCC------CChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999986542 22333321 1222 233332221 11 11112222223332
Q ss_pred --HHHcC-CCCcccccccchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHhhccCccEEEEe-cCCCCHHHHHHhhhh
Q psy6983 127 --VHLDQ-PITPIKMMERSIHSARWELTQCQICSQAL--MYENASRWSLTFQTMVQKTMLEVHL-DQPITPIKMMERSIH 200 (210)
Q Consensus 127 --~~~~~-~~~~~~~~~~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~~~~~Pdl~I~L-d~~~~pe~~l~Ri~~ 200 (210)
.+... ..+...+.||...+.. .+.. . -++. ++ +|...+....+.||++||| |+ ||+++++|+.+
T Consensus 77 ~~~I~paL~~g~~VI~DRy~~S~~-ayq~-~--~~l~~~~~----~~l~~~~~~~~~PDlti~L~dv--~pe~~~~R~~~ 146 (216)
T 3tmk_A 77 VDKIKKDLLEGKNIVMDRYVYSGV-AYSA-A--KGTNGMDL----DWCLQPDVGLLKPDLTLFLSTQ--DVDNNAEKSGF 146 (216)
T ss_dssp HHHHHHHHHTTCEEEEESCHHHHH-HHHH-T--TCCTTCCH----HHHHGGGTTSBCCSEEEEEECS--CCSCGGGCCSS
T ss_pred HHHHHHHHHcCCEEEEeccHhHHH-HHHH-h--cCCCHHHH----HHHHHHhhCCCCCCEEEEEeCC--CHHHHHHHhcc
Confidence 12111 1223456677665542 1211 1 1221 22 2222222346799999999 99 99999999875
Q ss_pred c
Q psy6983 201 S 201 (210)
Q Consensus 201 R 201 (210)
|
T Consensus 147 ~ 147 (216)
T 3tmk_A 147 G 147 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 107
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.89 E-value=1.1e-11 Score=108.89 Aligned_cols=32 Identities=28% Similarity=0.172 Sum_probs=29.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++.+++|++++|+||||||||||+++|++..
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56778999999999999999999999999864
No 108
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.89 E-value=2.1e-09 Score=94.33 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++++.+| +++|+||||||||||+++|.++.
T Consensus 54 v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 66778999 99999999999999999997654
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.88 E-value=4.7e-09 Score=83.40 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++..++|++|+|+|||||||||+++.|++.+
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556899999999999999999999999864
No 110
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.88 E-value=1.7e-09 Score=86.49 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=21.0
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
...||++||||+ ||+++++|...|+|
T Consensus 119 ~~~PDl~i~Ld~--~~e~~~~R~~~~dr 144 (197)
T 3hjn_A 119 GLIPDLTFYIDV--DVETALKRKGELNR 144 (197)
T ss_dssp TCCCSEEEEEEC--CHHHHHHHC---CT
T ss_pred CCCCCceeecCc--ChHHHHHhCcCcCc
Confidence 357999999999 99999999988887
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.87 E-value=1.2e-09 Score=104.48 Aligned_cols=61 Identities=8% Similarity=-0.072 Sum_probs=44.9
Q ss_pred HHHHHHHHcchhh---HHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--------CHHHHHHhhhhcCceeEE
Q psy6983 149 ELTQCQICSQALM---YENASRWSLTFQTM-------VQK---TMLEVHLDQPI--------TPIKMMERSIHSARFVLV 207 (210)
Q Consensus 149 ~~~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~ 207 (210)
.+.++|+.+|+.. ......+|++.++. +.. |+++|++|||. .....++++.++|..|++
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5677888888862 34567899988663 343 79999999987 233456677778999999
Q ss_pred ee
Q psy6983 208 IE 209 (210)
Q Consensus 208 ~~ 209 (210)
|+
T Consensus 789 is 790 (842)
T 2vf7_A 789 VE 790 (842)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 112
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.87 E-value=8.9e-10 Score=85.38 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=29.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+++++|++++|+||||||||||+|+|+|..
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 67778999999999999999999999999975
No 113
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.85 E-value=2e-09 Score=103.75 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHHHHHcchhh---HHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--CH------HHHHHhhhhcCceeEEe
Q psy6983 150 LTQCQICSQALM---YENASRWSLTFQTM-------VQK---TMLEVHLDQPI--TP------IKMMERSIHSARFVLVI 208 (210)
Q Consensus 150 ~~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~ 208 (210)
..++|+.+|+.. ......+|+++++. +.. |+++|++|||. ++ ...+.++.++|..+++|
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 457788888852 34467889987663 333 59999999987 33 34556667789999998
Q ss_pred e
Q psy6983 209 E 209 (210)
Q Consensus 209 ~ 209 (210)
+
T Consensus 905 s 905 (972)
T 2r6f_A 905 E 905 (972)
T ss_dssp C
T ss_pred c
Confidence 6
No 114
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.85 E-value=8.8e-10 Score=91.55 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=31.7
Q ss_pred cCCCcc-cccc-CCCCCCccccccccCCC---CeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 30 VPFCFL-CASQ-NHNSTGKRMSSSVNNKK---PFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 30 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~---g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+.+.++ +++| +....+++ +|+++.+ |++|+|+|++||||||+++.|++.++.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~--~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKK--KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp --------------CHHHHH--HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEcceeeEEecCcchhhhh--hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 445566 6666 33333333 5666688 999999999999999999999996554
No 115
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.85 E-value=5.4e-09 Score=87.20 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++|++++|+||||||||||+++|+|+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 6899999999999999999999999974
No 116
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.85 E-value=2.9e-09 Score=91.68 Aligned_cols=33 Identities=27% Similarity=0.198 Sum_probs=30.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+++|++++|+||||||||||+++|+|+.+
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 677779999999999999999999999999864
No 117
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.84 E-value=4e-09 Score=101.92 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=42.8
Q ss_pred HHHHHHHcchhh---HHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--CH------HHHHHhhhhcCceeEEe
Q psy6983 150 LTQCQICSQALM---YENASRWSLTFQTM-------VQK---TMLEVHLDQPI--TP------IKMMERSIHSARFVLVI 208 (210)
Q Consensus 150 ~~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~ 208 (210)
..++|+.+|+.. ......+|+++++. +.. |+++|++|||. ++ ...++++..+|..+++|
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 922 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456788888852 34466889988663 333 69999999987 33 34556667789999998
Q ss_pred e
Q psy6983 209 E 209 (210)
Q Consensus 209 ~ 209 (210)
+
T Consensus 923 s 923 (993)
T 2ygr_A 923 E 923 (993)
T ss_dssp C
T ss_pred c
Confidence 6
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.84 E-value=1.9e-09 Score=83.13 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|++|+|+|+|||||||+++.|++.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999997654
No 119
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.84 E-value=7.8e-09 Score=85.44 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
...+|++|+|+|||||||||++++|+..
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3478899999999999999999999943
No 120
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=1.1e-09 Score=92.98 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=26.6
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+...|++++|+||||||||||+++|+|+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 345788999999999999999999999854
No 121
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.83 E-value=8.8e-09 Score=81.63 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+.+|+|+|++||||||+++.|+..++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5566899999999999999999997544
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.81 E-value=3e-09 Score=87.26 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh---cCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFN---KSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~---~~~ 81 (210)
.++++++|+||||||||||+++|+ |..
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 357899999999999999999999 653
No 123
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.81 E-value=1.2e-09 Score=105.27 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=44.2
Q ss_pred HHHHHHHHcchhh---HHhhhhHHHHHHhh-------ccC---ccEEEEecCCC--CH------HHHHHhhhhcCceeEE
Q psy6983 149 ELTQCQICSQALM---YENASRWSLTFQTM-------VQK---TMLEVHLDQPI--TP------IKMMERSIHSARFVLV 207 (210)
Q Consensus 149 ~~~~~L~~~gl~~---~~~~~~~s~~~~~~-------~~~---Pdl~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~ 207 (210)
...++|+.+|+.. -.....+|++++++ +.. |+++|++|||. ++ ...++++..+|.+|++
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4567888888862 23456899988764 333 57999999987 33 3566777788999999
Q ss_pred ee
Q psy6983 208 IE 209 (210)
Q Consensus 208 ~~ 209 (210)
|+
T Consensus 864 I~ 865 (916)
T 3pih_A 864 IE 865 (916)
T ss_dssp EC
T ss_pred Ee
Confidence 97
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.81 E-value=1e-08 Score=80.41 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|++++|+||||||||||++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 679999999999999999999974
No 125
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.80 E-value=3.6e-08 Score=77.95 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|.+|+|+|++||||||+++.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999754
No 126
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.80 E-value=1.3e-08 Score=79.10 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+|++|+|+|++||||||+++.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999863
No 127
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.80 E-value=1.4e-08 Score=83.49 Aligned_cols=29 Identities=31% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..++.+|+|+|++||||||+++.|+..++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999987544
No 128
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.79 E-value=2e-08 Score=80.34 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=21.5
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHS 201 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R 201 (210)
..||++|||++ |++++++|+.+|
T Consensus 105 ~~~d~vi~l~~--~~e~~~~Rl~~R 127 (216)
T 3dl0_A 105 KPIDYVINIQV--DKDVLMERLTGR 127 (216)
T ss_dssp CCCSEEEEEEC--CGGGHHHHHHTE
T ss_pred CCCCEEEEEEC--CHHHHHHHHHCC
Confidence 46999999999 999999999999
No 129
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.79 E-value=1.2e-10 Score=103.29 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=30.0
Q ss_pred ccccCCCCe--------------------EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPF--------------------TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~--------------------~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++++++|+ +++|+||||||||||+++|+|+..
T Consensus 42 is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 677779999 999999999999999999999754
No 130
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.78 E-value=1e-10 Score=99.74 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++|++++|+||||||||||+++|++++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 38899999999999999999999999643
No 131
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.78 E-value=1.5e-08 Score=77.24 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.8
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
....|+++|||++ |++++++|+..|+|.
T Consensus 98 ~~~~~~~~i~l~~--~~~~~~~R~~~R~~~ 125 (179)
T 3lw7_A 98 LLGDSVYIVAVHS--PPKIRYKRMIERLRS 125 (179)
T ss_dssp HHCSCEEEEEEEC--CHHHHHHHHHTCC--
T ss_pred HhCCCcEEEEEEC--CHHHHHHHHHhccCC
Confidence 4457999999999 999999999999984
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.77 E-value=6e-09 Score=94.18 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=45.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhH
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTM 124 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~ 124 (210)
+|+++++|++++|+|+||||||||+++|++++ .+.+.+.+...... ...+. .+..++.++|++|++.+++.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa---~eQL~-~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA---VEQLQ-VWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHH---HHHHH-HHHHHHTCCEECCSTTCCHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhh---HHHHH-HHHHhcCceEEecccCcCHH
Confidence 67778999999999999999999999999973 24333332211000 00011 12234678999998755443
No 133
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.77 E-value=5.2e-09 Score=93.47 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=36.9
Q ss_pred cCCCccccccC-CCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 30 VPFCFLCASQN-HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 30 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+.+++..++ ....+++ + +++.+|++++|+||||||||||+++|+|+.+
T Consensus 132 l~~~~v~~~~~tg~~vld~--v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINA--L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHH--H-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eEEeccceecCCCceEEee--e-EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 33455555554 2222233 4 7789999999999999999999999999865
No 134
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.76 E-value=1.5e-08 Score=79.41 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.++.+|+|+|++||||||+++.|+..++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56679999999999999999999975443
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.76 E-value=9.3e-09 Score=88.58 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=45.5
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----CcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
..++|++++|+||||||||||++.|++.+ .+.+.+.++..... ...+..+ ..+..+.+++|.+.+++....
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a---~eql~~~-~~~~gv~~v~q~~~~~p~~~v 200 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGA---IEQLEEH-AKRIGVKVIKHSYGADPAAVA 200 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTH---HHHHHHH-HHHTTCEEECCCTTCCHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccch---HHHHHHH-HHHcCceEEeccccCCHHHHH
Confidence 45789999999999999999999999863 45555555432100 0112211 222345588888776665543
No 136
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.75 E-value=1.1e-08 Score=81.47 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++|++++|+||||||||||+++|+++.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999753
No 137
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.74 E-value=3.2e-08 Score=77.30 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++.+|.|+|++||||||+++.|+..++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999987544
No 138
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.73 E-value=2.6e-08 Score=79.58 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.5
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHS 201 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R 201 (210)
..||++|||++ |++++++|+.+|
T Consensus 105 ~~~d~vi~l~~--~~e~~~~Rl~~R 127 (216)
T 3fb4_A 105 KKLDYVLNIKV--EQEELMKRLTGR 127 (216)
T ss_dssp CCCSEEEEEEC--CHHHHHHHHHSE
T ss_pred CCCCEEEEEEC--CHHHHHHHHHcC
Confidence 46999999999 999999999998
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.73 E-value=2.9e-08 Score=77.93 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.+.+|+|+|++||||||+++.|+..++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999986543
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.71 E-value=4.2e-08 Score=78.84 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
++|.+|+|+|++||||||+++.|+..++.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35678999999999999999999986543
No 141
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.70 E-value=2e-08 Score=78.18 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|.+|+|+|++||||||+++.|+..++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999996543
No 142
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.68 E-value=6e-08 Score=75.60 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=22.3
Q ss_pred CccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 178 KTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 178 ~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
.||++|||++ |++++++|+.+|+|
T Consensus 122 ~~d~vi~l~~--~~e~~~~Rl~~r~~ 145 (195)
T 2pbr_A 122 KPDITLLLDI--PVDIALRRLKEKNR 145 (195)
T ss_dssp CCSEEEEEEC--CHHHHHHHHHTTTC
T ss_pred CCCEEEEEeC--CHHHHHHHhhccCc
Confidence 7999999999 99999999998776
No 143
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=8.1e-09 Score=91.83 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=40.3
Q ss_pred cccccCCCCeE--EEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHH
Q psy6983 49 SSSVNNKKPFT--VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLE 126 (210)
Q Consensus 49 ~~~~~~~~g~~--i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~ 126 (210)
.+|+++++|++ ++|+||||||||||+++|+|.. +.+.++..... ....+.+++++|+..+++.++
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~---l~g~~~~~~~~----------~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK---FEGEPATHTQP----------GVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC---C-------CCS----------SCEEEEEEEEEEC--CEEEEE
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc---ccCCcCCCCCc----------cceEeeEEEEeecCccccccc
Confidence 46777899999 9999999999999999999973 22333221000 011246899999876544333
No 144
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.67 E-value=6.3e-08 Score=75.35 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+|+|+|++||||||+++.|+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987544
No 145
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.67 E-value=6.7e-09 Score=88.63 Aligned_cols=49 Identities=10% Similarity=-0.114 Sum_probs=37.7
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+.+++++|+ ...++ .+|+++++|++++|+||||||||||+++|+|++
T Consensus 102 i~~~~vs~~y~-~~vL~--~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITF-INALK--LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHH-HHHHH--HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhc--cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44566666664 21222 367788999999999999999999999999974
No 146
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.67 E-value=4.6e-08 Score=78.68 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
++.+|+|+|++||||||+++.|+..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999999999986543
No 147
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=9.8e-09 Score=89.38 Aligned_cols=30 Identities=33% Similarity=0.283 Sum_probs=26.6
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+...+|++++|+||||||||||+++|+++.
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 355788899999999999999999999874
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.63 E-value=6.9e-08 Score=76.35 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.+..+|+|+|++||||||+++.|+..++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 55678999999999999999999975543
No 149
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.62 E-value=3.6e-08 Score=78.29 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+|+|++||||||+++.|++++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
Confidence 79999999999999999999953
No 150
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.62 E-value=4.8e-08 Score=83.92 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.-+++|+||||||||||+++|++++.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44899999999999999999998743
No 151
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.62 E-value=8.9e-08 Score=74.84 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..+|.+|+|+|++||||||+++.|++.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999763
No 152
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.62 E-value=1.2e-08 Score=88.86 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+++|++++|+||||||||||+++|+++.+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 677889999999999999999999999999865
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.61 E-value=4.8e-08 Score=75.90 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++.+|.|+|++||||||+++.|+..++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4566899999999999999999997544
No 154
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=3.4e-09 Score=90.56 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=58.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ce---eeccccccccccCcchHHHHHhcccceeeeehhhHhhh
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TA---YAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKT 123 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~ 123 (210)
+++.+|++++|+||||||||||+++|+|.... .. .|+.++.... ......++++|.+.+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~-----------~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE-----------LIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC-----------EEEETTEEEESSCSCSS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH-----------HhhcCCEEEecCCCccc
Confidence 34578999999999999999999999997532 21 2222211000 00112689999874321
Q ss_pred ----HH--HHHHcCCC------Ccccccc-cchhhhHHHHHHHHHHcchh--hHHhhhhHHHHHHh
Q psy6983 124 ----ML--EVHLDQPI------TPIKMME-RSIHSARWELTQCQICSQAL--MYENASRWSLTFQT 174 (210)
Q Consensus 124 ----~~--~~~~~~~~------~~~~~~~-~s~~e~~~~~~~~L~~~gl~--~~~~~~~~s~~~~~ 174 (210)
.+ +.+..... ....+.+ ....+....+.++++..++. .+..|..++.++.+
T Consensus 237 ~~l~~lt~e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 237 LEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp CCCTTCCHHHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 11 33321110 0011111 11223334678899999986 45667766555443
No 155
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.59 E-value=1.8e-07 Score=75.47 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.++.+|+|+|++||||||+++.|+..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999999976543
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.59 E-value=5.9e-08 Score=75.62 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+|+|+|++||||||+++.|+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987544
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.58 E-value=3.1e-08 Score=77.44 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++|++++|+|||||||||+++.|++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 5789999999999999999999999974
No 158
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.58 E-value=5.2e-07 Score=72.20 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.+|+|+|++||||||+++.|+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 4568999999999999999999984
No 159
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.58 E-value=2.1e-07 Score=75.17 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=22.3
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
..||++|||++ |++++++|+..|+
T Consensus 104 ~~~d~vi~l~~--~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 104 MKINFVIEILL--PREVAKNRIMGRR 127 (223)
T ss_dssp CCCCEEEEEEC--CHHHHHHHHHTBC
T ss_pred CCCCEEEEEEC--CHHHHHHHHHccc
Confidence 47999999999 9999999999886
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.57 E-value=1.2e-07 Score=75.36 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..+|.+|+|+|||||||||+++.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678899999999999999999998765
No 161
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.57 E-value=1.7e-07 Score=76.09 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
..+..|+|+|++||||||+++.|+..+++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45568999999999999999999976543
No 162
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.57 E-value=2.9e-08 Score=85.60 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC-----CCcceeeccccccccccCcchHHHHHhcccceeeeehhhHhh
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS-----GDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQK 122 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~-----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~ 122 (210)
+++++++|++++|+|+||||||||+++|+++ +.+.+.+.+...... +..+ ...+.++++++|++.++
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~--~~~~----~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT--GGSI----LGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSS--CCCS----SCCGGGSTTGGGCTTEE
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccccc--ccch----HHHhhhheeeccCcccc
Confidence 5667799999999999999999999999975 345555555432110 0000 01235689999987554
No 163
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.56 E-value=4.2e-08 Score=85.05 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=29.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+.+++|++++|+||||||||||++.+++..
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999999999875
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.56 E-value=2e-07 Score=73.02 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=27.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC-CCc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS-GDI 83 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~-~~i 83 (210)
+|++..++..|+|+|++||||||+++.|+.. .++
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3455677889999999999999999999987 443
No 165
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.56 E-value=2.6e-08 Score=79.22 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC---cceeeccccccccccCcchHHHHHhcccceeeeehhh
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD---ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~---i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~ 119 (210)
|++++|+||||||||||+++|+++.. +.+.+...... . ...+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~---------~---~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV---------R---QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE---------E---TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchh---------H---hhhceEEEEEEec
Confidence 67899999999999999999999742 43433333211 0 1236789999974
No 166
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.55 E-value=1.5e-07 Score=74.10 Aligned_cols=27 Identities=30% Similarity=0.118 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+|.+|+|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357799999999999999999999875
No 167
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.55 E-value=8e-09 Score=87.81 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..-.|++++|+||||||||||+++|+ ...
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34678999999999999999999999 753
No 168
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.53 E-value=2.8e-07 Score=76.33 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=24.1
Q ss_pred ccCccEEEEecCCCCHHHHHHhhhhcCce
Q psy6983 176 VQKTMLEVHLDQPITPIKMMERSIHSARF 204 (210)
Q Consensus 176 ~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r~ 204 (210)
...|+++|||++ |+++|++|+.+|++.
T Consensus 97 ~~~~~~vi~l~~--~~e~~~~R~~~R~~~ 123 (260)
T 3a4m_A 97 YNKNYAIIYLKA--SLDVLIRRNIERGEK 123 (260)
T ss_dssp TTCEEEEEEEEC--CHHHHHHHHHHTTCS
T ss_pred cCCCEEEEEEeC--CHHHHHHHHHhCCCC
Confidence 457899999999 999999999999864
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.53 E-value=2.4e-07 Score=75.24 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=26.9
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
..++..+|.|+||+||||+|.++.|+..+++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3477789999999999999999999987654
No 170
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=4.7e-08 Score=86.77 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=31.7
Q ss_pred cCCCccccccCCCCCCccccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 30 VPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+.+++.+++....+++++++ |+|+|+||||||||+++|+|..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFT--------LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEecceeECCEEEecCCCEE--------EEEECCCCCcHHHHHHHHhCCC
Confidence 4566666667665566666554 3999999999999999999974
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.50 E-value=1e-07 Score=76.63 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++.+|+|+|++||||||+++.|+..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445799999999999999999997654
No 172
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.50 E-value=2.1e-07 Score=73.59 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|+|++||||||+++.|++ .++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 689999999999999999999 443
No 173
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.49 E-value=1.9e-07 Score=74.01 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+|.+|+|+|++||||||+++.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 174
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.49 E-value=8.7e-08 Score=90.93 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|++++|+||||||||||+|++++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 899999999999999999999986
No 175
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.49 E-value=5.5e-08 Score=87.79 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=33.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC-----Ccceeecccc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPVN 91 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~~ 91 (210)
+|+++++ ++++|+||||||||||+++|+|+. .+.+.+.++.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 5566788 999999999999999999999973 3556665554
No 176
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.48 E-value=3.5e-08 Score=78.42 Aligned_cols=25 Identities=28% Similarity=0.109 Sum_probs=23.0
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
+.||++||+++ |++++++|+.+|++
T Consensus 131 ~~~d~~i~l~~--~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 131 PKPDWQVLLAV--SAELAGERSRGRAQ 155 (214)
T ss_dssp CBCEEEEEEEE--EHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeC--CHHHHHHHHHcccc
Confidence 47999999999 99999999999865
No 177
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.48 E-value=3.3e-08 Score=86.10 Aligned_cols=65 Identities=15% Similarity=-0.000 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC-cceeecccccccccc-CcchHHHHHhcccceeeeehhhHhhhHHHHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD-ITAYAEPVNLWRDVK-GHNLLALMYENASRWSLTFQTMVQKTMLEVH 128 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~-i~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~ 128 (210)
.+|++++|+||||||||||+++|+|... ... | .+... |.... ......+++++|...+++.....
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~-G-----~I~~~~G~g~~---tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILT-N-----DVSNVSGLGQH---TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC-C---------------------CCCEEEECTTSCEEEECHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccccccc-C-----CccccCCCCcc---ceEEEEEEEECCCCEecCcccHH
Confidence 3689999999999999999999999764 321 1 11111 11110 12235678999887665544443
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.47 E-value=2.6e-07 Score=73.80 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.6
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..+.+|.+|+|+|++||||||+++.|++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345889999999999999999999999864
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.46 E-value=7.9e-08 Score=88.15 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=26.7
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+++|++++|+|+||||||||+++|++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999999999874
No 180
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.46 E-value=6.3e-07 Score=70.98 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++|.+|+|+|++||||||+++.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999964
No 181
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.46 E-value=8e-08 Score=75.10 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999998653
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.44 E-value=1.2e-06 Score=67.39 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc-CCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK-SGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~-~~~ 82 (210)
.+|.|+|++||||||+++.|+. ..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 4799999999999999999998 444
No 183
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.42 E-value=2.8e-07 Score=71.68 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+..|+|+|++||||||+++.|+..++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 558999999999999999999986543
No 184
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.41 E-value=9.9e-08 Score=82.79 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=31.7
Q ss_pred ccccCCC--CeEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 50 SSVNNKK--PFTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 50 ~~~~~~~--g~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
+++.+.+ |+.++|+||||||||||+++|+|++...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 7778889 9999999999999999999999987653
No 185
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.40 E-value=2.5e-07 Score=80.78 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=26.7
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+++|++++|+||||||||||+++|+++.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999999999874
No 186
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.39 E-value=7.4e-07 Score=73.02 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=23.3
Q ss_pred hccCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 175 MVQKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 175 ~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
....||.+|+|++ |++++++|+..|.
T Consensus 107 ~~~~~d~VI~Ldv--p~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 107 AGVAIDYVLEIDV--PFSEIIERMSGRR 132 (230)
T ss_dssp TTCCCSEEEEECC--CHHHHHHHHHTEE
T ss_pred hCCCccEEEEEeC--CHHHHHHHHHcCC
Confidence 3457999999999 9999999999985
No 187
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.39 E-value=2.7e-06 Score=65.64 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.++.+|.|+|++||||||+++.|+..++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35678999999999999999999976543
No 188
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.36 E-value=3.9e-07 Score=88.96 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|++++|+||||||||||+|++ |+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 899999999999999999999 86
No 189
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.36 E-value=1.5e-07 Score=81.56 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=29.0
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+|++++|+||||||||||+++|+|...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7779999999999999999999999999864
No 190
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.32 E-value=9.1e-07 Score=71.16 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|.|+||+||||+|.++.|+..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5789999999999999999987654
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.32 E-value=1.8e-07 Score=86.70 Aligned_cols=61 Identities=18% Similarity=0.061 Sum_probs=34.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCc------ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHH
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKSGDI------TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEV 127 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~~~i------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~ 127 (210)
++|+||||||||||+++|+|+..+ .+.+.++..... ......++.++|+||++.+++..++
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~-------~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL-------VNEDKWRGKVSYQDYEIEISDASEV 114 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC-------SSSSCCEEEESCC---CCCCCHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC-------CccccceeEEeeecccccCCCHHHH
Confidence 999999999999999999998522 222222210000 0001223678999999766655443
No 192
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.31 E-value=1.3e-06 Score=69.20 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998754
No 193
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.30 E-value=5.5e-07 Score=71.96 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=21.8
Q ss_pred cCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 177 QKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 177 ~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
..||++|||++ +++++++|+..|+
T Consensus 101 ~~~d~vi~l~~--~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 101 INVDYVLEFDV--PDELIVDRIVGRR 124 (214)
T ss_dssp CCCSEEEEEEC--CHHHHHHHHHTEE
T ss_pred CCCCEEEEEEC--CHHHHHHHHHCCc
Confidence 37999999999 9999999998875
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.30 E-value=4.2e-07 Score=69.47 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.|+|+|++||||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998544
No 195
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.30 E-value=4.6e-07 Score=69.48 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
++|+|+|++||||||+.+.|+..+++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999986444
No 196
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.27 E-value=2.5e-07 Score=72.96 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=27.1
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+.+|..++|+|++|||||||++.|+|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 667899999999999999999999999864
No 197
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.27 E-value=2.5e-07 Score=77.38 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+++| ++|.||||||||||+++|++..+
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 55667787 89999999999999999999765
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.26 E-value=4.2e-07 Score=72.77 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999998653
No 199
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.26 E-value=2.1e-08 Score=82.12 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
++++|+||||||||||+++|++..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 789999999999999999999974
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.24 E-value=4.1e-06 Score=74.05 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.7
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+...++++|.|+|++||||||+++.|+...+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 33466789999999999999999999876543
No 201
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.24 E-value=5.6e-07 Score=69.81 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=25.5
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 51 ~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
++.+.+| +++|+|||||||||++++|...+
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4445677 89999999999999999998764
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.22 E-value=4.9e-06 Score=65.40 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|.|++||||||+++.|++.+++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7999999999999999999986543
No 203
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.22 E-value=1.2e-06 Score=67.99 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|+|++||||||+++.|+..+++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999986443
No 204
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.21 E-value=1e-06 Score=67.43 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
+|+|+|++||||||+++.|+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999986443
No 205
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.21 E-value=6.1e-07 Score=75.24 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=28.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++.+++|++++|+||||||||||++.|++.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4466799999999999999999999999986
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.20 E-value=7.6e-07 Score=76.28 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcceeeccccccccccCcchHHHHHh-cccceeeeehhhHhhhHH-HHHHcCCCC-
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYE-NASRWSLTFQTMVQKTML-EVHLDQPIT- 134 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~vfQ~~~l~~~~-~~~~~~~~~- 134 (210)
+.++|.||+|+|||||+++|++..+..+. +..+.....+.++...... ....+.++.|...+.+.. +.+......
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~--~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE--EEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence 68999999999999999999997532211 1111111112222111111 235688998887665421 211111000
Q ss_pred cccccccchhhhHHHHHHHHHHcchh-hHHhhhhHHHHHHhhccCccEEEEecCCC
Q psy6983 135 PIKMMERSIHSARWELTQCQICSQAL-MYENASRWSLTFQTMVQKTMLEVHLDQPI 189 (210)
Q Consensus 135 ~~~~~~~s~~e~~~~~~~~L~~~gl~-~~~~~~~~s~~~~~~~~~Pdl~I~Ld~~~ 189 (210)
...+.- ........+...+..+++. .-.....++++++.+ ..+.+.+|+..
T Consensus 130 ~~~i~~-~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR---~~l~~~Ld~~~ 181 (334)
T 1in4_A 130 QIDIMI-GKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSR---FGIILELDFYT 181 (334)
T ss_dssp CCCC----------------CCCEEEEEESCGGGSCHHHHTT---CSEEEECCCCC
T ss_pred ccceee-ccCcccccccccCCCeEEEEecCCcccCCHHHHHh---cCceeeCCCCC
Confidence 000000 0111112233444455554 222345667775554 46678888854
No 207
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.19 E-value=4.2e-06 Score=70.12 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+..+|+|+|++||||||+++.|+.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999964
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.18 E-value=5.8e-07 Score=69.78 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=27.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-++.+.+|+.++|.||+|||||||++++++..
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556779999999999999999999999863
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.16 E-value=9.6e-06 Score=66.45 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.+..+|+|.|++||||||+++.|+..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34458999999999999999999985543
No 210
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.15 E-value=2.1e-06 Score=69.32 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=21.2
Q ss_pred CccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 178 KTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 178 ~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
.+|.+|++++ |+++.++|+.+|+
T Consensus 131 ~~D~vi~V~a--p~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 131 RCDRVLVVDC--PVDTQIARVMQRN 153 (210)
T ss_dssp HCSEEEEEEC--CHHHHHHHHHHHH
T ss_pred cCCeEEEEEC--CHHHHHHHHHhcC
Confidence 4899999999 9999999999984
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.15 E-value=1.1e-06 Score=69.67 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.5
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..++|++++|+|+|||||||+++.|++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999985
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.12 E-value=9.9e-06 Score=66.54 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..++.+|.|+|++||||||+++.|+..++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46778999999999999999999998654
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.11 E-value=6e-07 Score=81.61 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+++|+.++|+||||||||||+++|+++.+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 566778999999999999999999999999864
No 214
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.11 E-value=1.6e-05 Score=66.45 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+|.|+|++||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999973
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.07 E-value=2e-06 Score=76.22 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCC-----Ccceeeccc
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG-----DITAYAEPV 90 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~-----~i~~~~~~~ 90 (210)
..+|++++|+||||||||||+++|+++. .+.+.+.++
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 3789999999999999999999999863 244555554
No 216
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.07 E-value=1.5e-06 Score=69.28 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=25.5
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.+|++++|+||||||||||++.+++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999965
No 217
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.00 E-value=3.2e-06 Score=80.64 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++. ++|++++|+||||||||||+|++++.
T Consensus 601 isl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 601 LNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 5555 88999999999999999999999985
No 218
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.99 E-value=2.3e-06 Score=82.59 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=28.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+++.+++|++++|+||||||||||+|++++.
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 36677799999999999999999999999763
No 219
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.99 E-value=1.4e-06 Score=68.03 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++++|+|+||||||||++.|++++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999999753
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.98 E-value=2.3e-06 Score=65.13 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+.++|+||+|||||||++++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999863
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.95 E-value=3.1e-06 Score=68.06 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=25.3
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+.+|++++|+||||||||||++.|++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999999999998
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.94 E-value=4.7e-06 Score=66.03 Aligned_cols=27 Identities=26% Similarity=0.068 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+.+|++++|+||||||||||++.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999999987
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.91 E-value=4.6e-06 Score=68.13 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+.+| ++|.||||||||||+++|++...
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 45666777 88999999999999999998754
No 224
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.91 E-value=3.5e-06 Score=71.35 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++|+|+||||||||++.|.+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 399999999999999999986
No 225
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.91 E-value=6.2e-06 Score=69.60 Aligned_cols=29 Identities=31% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+++.+|+|+|+||||||||++.|++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36788999999999999999999998753
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.88 E-value=7.7e-06 Score=69.60 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=27.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++..++|++++|+|++||||||++..|++.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34556889999999999999999999999863
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.87 E-value=7.4e-06 Score=62.97 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
|.+|.|+|+|||||||+++.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998654
No 228
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.87 E-value=7.3e-05 Score=69.41 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|.+|.|+|.+||||||+++.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999998764
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.87 E-value=6.2e-06 Score=68.45 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+.+| ++|+||||||||||+++|++...
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 55666777 88999999999999999998754
No 230
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.86 E-value=5.9e-06 Score=79.95 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=27.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+++.+.+|++++|+|||||||||++|+++.
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667779999999999999999999999954
No 231
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.85 E-value=6.7e-06 Score=71.52 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+++++.+| +++|+|||||||||++++|.+
T Consensus 20 ~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 20 GTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 45556888 999999999999999999986
No 232
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.82 E-value=1e-05 Score=68.90 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-++++|+|+||||||||++.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999763
No 233
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.80 E-value=7.6e-06 Score=68.03 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.+|++++|+||||||||||++.+++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999974
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.80 E-value=1.1e-05 Score=62.42 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|.+|+|+|++||||||+++.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 235
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.80 E-value=9e-06 Score=70.66 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=33.9
Q ss_pred hhhHHHHHHhhc-------------cCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 165 ASRWSLTFQTMV-------------QKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 165 ~~~~s~~~~~~~-------------~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
+.++|+++++++ ..|++++++||+. ||+. .++++.+.|+.+++|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~it 342 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFIT 342 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 446888876542 4899999999987 5543 4677777899999886
No 236
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=8.2e-06 Score=69.50 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=24.6
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 51 ~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++++.+| +++|+||||||||||+++|...
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3445677 9999999999999999999854
No 237
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.78 E-value=1e-05 Score=71.49 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.+|++++|+||||||||||+++|.++
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999999875
No 238
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.78 E-value=5.6e-06 Score=73.39 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=30.4
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 48 ~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-.++++++.++.++|+|+||||||||+++|++..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3477788999999999999999999999999873
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.78 E-value=1.4e-05 Score=68.29 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=28.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 49 ~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+++..++|++++|+|++||||||++..|++.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35566789999999999999999999999986
No 240
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.76 E-value=2e-05 Score=61.62 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+..+|+|+|++||||||+++.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999999987
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.72 E-value=1.6e-05 Score=64.49 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.+|.+|+|+|++||||||+++.|++.+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 67889999999999999999999985443
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.69 E-value=1.9e-05 Score=61.60 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++|+|++|||||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999863
No 243
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.69 E-value=1.5e-05 Score=72.33 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++..+.+|++++|+||||||||||++.+++.
T Consensus 274 L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 274 CGGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999999999986
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.68 E-value=2.1e-05 Score=59.71 Aligned_cols=22 Identities=32% Similarity=0.384 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+.+|+|||||||||++.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999863
No 245
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.68 E-value=1.9e-05 Score=65.06 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++++|+||+|||||||.+.|++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998654
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.67 E-value=1.9e-05 Score=64.70 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+.+|+|.||+||||||+++.|+..++
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445899999999999999999997644
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.66 E-value=3.5e-05 Score=67.77 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred ccCCCccccccCCCC-CCc------------cccccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 29 SVPFCFLCASQNHNS-TGK------------RMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.|.+++..|+... .++ -+.+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 456777766665432 222 1247788899999999999999999999999874
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.64 E-value=2.5e-05 Score=66.04 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+|++++|+|++||||||++..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999985
No 249
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.63 E-value=0.00026 Score=60.06 Aligned_cols=119 Identities=11% Similarity=0.031 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCc-----ceeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDI-----TAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+.+-+|++.|.-||||||.++.|...++. ....+|... ..+ |. ++. ....
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~e---------------E~~------~~-yl~---R~~~ 138 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTET---------------ERG------QW-YFQ---RYVA 138 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHH---------------HHT------SC-TTH---HHHT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChH---------------HHh------ch-HHH---HHHH
Confidence 56889999999999999999999987652 222333211 001 11 111 1111
Q ss_pred cC-CCCcccccccchhhhHHHHHHHHHHcchhhHHhh-hhHHHH--HHhhccCccEEEEecCCCCHHHHHHhhhhc
Q psy6983 130 DQ-PITPIKMMERSIHSARWELTQCQICSQALMYENA-SRWSLT--FQTMVQKTMLEVHLDQPITPIKMMERSIHS 201 (210)
Q Consensus 130 ~~-~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~-~~~s~~--~~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R 201 (210)
.. ..+...+++|+-.+.. .+......+...++... .++... +...-+.|++.+||+. ++++.++|+.+|
T Consensus 139 ~LP~~G~IvIfDRswYs~v-~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~I--s~eeq~kR~~~R 211 (304)
T 3czq_A 139 TFPTAGEFVLFDRSWYNRA-GVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINI--GREMQLKRFHDR 211 (304)
T ss_dssp TCCCTTCEEEEEECGGGGT-THHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEC--CHHHHHHHHHHH
T ss_pred hcccCCeEEEEECCcchHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEC--CHHHHHHHHHHh
Confidence 12 2234567788766642 11222111111122222 222111 1111357999999999 999999999876
No 250
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.62 E-value=2.8e-05 Score=60.80 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|||||||++.|++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.62 E-value=2.1e-05 Score=60.46 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
.|+|+|++||||||+++.|+..+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999986554
No 252
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.62 E-value=2.9e-05 Score=59.94 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|+|+|++||||||+++.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998753
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=3.2e-05 Score=68.02 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+++|..++|+|++|||||||+++|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 457889999999999999999999999
No 254
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.60 E-value=5.8e-05 Score=69.44 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
++|.+|.|+|.+||||||+++.|+..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998753
No 255
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.60 E-value=3.7e-05 Score=58.91 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++|..++|+|++|+|||||++.|.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45778999999999999999999985
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.57 E-value=4.2e-05 Score=64.57 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=26.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++. +|++++|+|++||||||++..|++..
T Consensus 93 i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4454 89999999999999999999999863
No 257
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.54 E-value=4.8e-05 Score=65.33 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=27.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++...++.+++|+|++|+|||||++.|++.
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4566789999999999999999999999864
No 258
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.54 E-value=4.5e-05 Score=64.03 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..|.++.|+|||||||||+++.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998654
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.51 E-value=3.6e-05 Score=67.82 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=23.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHh
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~ 78 (210)
.-+.+|++++|+||||||||||++.++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 346899999999999999999999654
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.49 E-value=5.2e-05 Score=59.27 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+++|+|+||||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 261
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.47 E-value=5e-05 Score=64.12 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++.+++|+|++|+|||||++.|.+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34458999999999999999999985
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=5.7e-05 Score=60.60 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.5
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.-+.+|++++|.||+|||||||+..++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3458899999999999999999766653
No 263
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=7.2e-05 Score=64.53 Aligned_cols=26 Identities=42% Similarity=0.752 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++.+++|+|++|||||||++.|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999974
No 264
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.43 E-value=7.6e-05 Score=56.53 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 265
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.42 E-value=5.9e-05 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCc
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDI 83 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i 83 (210)
-.+|+|.|++||||||+.+.|+..+++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 347999999999999999999986343
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.42 E-value=5.5e-05 Score=65.65 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.4
Q ss_pred ccccCCCCeE--EEEEcCCCCcHHHHHHHHhcCC
Q psy6983 50 SSVNNKKPFT--VFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 50 ~~~~~~~g~~--i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+++.+++|+. |+|+|++||||||++++|++.+
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3445567767 9999999999999999999864
No 267
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.38 E-value=0.0002 Score=65.43 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.+.+|.++|++||||||+++.|+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999875
No 268
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.36 E-value=8.9e-05 Score=67.64 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=27.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+ +|+.++|+||+|+|||||+++|++...
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34444 788999999999999999999998754
No 269
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.35 E-value=0.00051 Score=62.33 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=24.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+.+.+.++..+.|.|.+||||||++++|..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 344446677899999999999999999874
No 270
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.35 E-value=9.1e-05 Score=57.12 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999985
No 271
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.34 E-value=0.00017 Score=62.18 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.++.+|+|+||+|||||||...|+..++
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999998765
No 272
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.32 E-value=5.4e-05 Score=69.86 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+..|+.+.|+||+|+|||||+++|++...
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 556668889999999999999999999999864
No 273
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.32 E-value=5.5e-05 Score=63.64 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.+|+|.|+|||||||+++.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999874
No 274
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.00011 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
-+.|.||+|+||||++++|++..+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998644
No 275
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.00014 Score=55.78 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 276
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.27 E-value=0.00013 Score=57.84 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
+.+|+|+|++||||||+++.|+..+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3479999999999999999999865543
No 277
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.25 E-value=0.00015 Score=57.69 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~ 78 (210)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999985
No 278
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.24 E-value=0.00017 Score=61.81 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=31.7
Q ss_pred hhhHHHHHHh-------------hccCccEEEEecCCC--CHHH------HHHhhhhcCceeEEee
Q psy6983 165 ASRWSLTFQT-------------MVQKTMLEVHLDQPI--TPIK------MMERSIHSARFVLVIE 209 (210)
Q Consensus 165 ~~~~s~~~~~-------------~~~~Pdl~I~Ld~~~--~pe~------~l~Ri~~R~r~~~~~~ 209 (210)
..++|+++++ ++..|++++++||+. ||.. .++++..++..++++.
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3457777754 235899999999987 6643 4566667788888874
No 279
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.23 E-value=0.00018 Score=68.65 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=27.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+.+|+.+.|.||+|||||||+++|++..+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3568889999999999999999999999865
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.22 E-value=0.00015 Score=61.28 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++..+ |++++++|++|+||||++..|++.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 344445 899999999999999999999975
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.22 E-value=0.00017 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+++|+|++|||||||+..|++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999998864
No 282
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.19 E-value=0.0002 Score=61.78 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|+|+||+|||||||++.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999997654
No 283
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.18 E-value=8.2e-05 Score=67.32 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++.+.+| +.+|+|+||||||||+.+|...
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 45566888 9999999999999999999644
No 284
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.18 E-value=0.00017 Score=65.29 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+++.+.+| +.|.||+|+|||||+++|++..+
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 45556776 88999999999999999998754
No 285
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.16 E-value=0.00017 Score=56.44 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=23.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+++..++. .|+|+|++|+|||||++.+.+
T Consensus 19 ~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 19 LGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred hhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34444555 478999999999999999986
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.16 E-value=0.00031 Score=59.98 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+|+|+||+|||||||+..|+...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999997654
No 287
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.14 E-value=0.00025 Score=60.73 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+|+|+||+|||||||.+.|+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998654
No 288
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.14 E-value=0.00019 Score=62.27 Aligned_cols=28 Identities=25% Similarity=0.070 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
=+.+|+++.|.||+|||||||+..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999864
No 289
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.00023 Score=59.75 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=26.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+.++..+.|.||+|+|||||++++++..+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356777899999999999999999998754
No 290
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.14 E-value=0.00037 Score=59.92 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999994
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.12 E-value=0.00038 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-.|..++|+||||||||||+..|+..+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999999764
No 292
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.10 E-value=0.00029 Score=62.54 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=25.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++. ++++++++|++||||||++..|++.
T Consensus 93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444 7899999999999999999999976
No 293
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00012 Score=62.41 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=25.5
Q ss_pred ccccCCCCeE--EEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFT--VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~--i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++..++.|++ +.+.||+|+||||+++++++.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344466666 899999999999999999986
No 294
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.07 E-value=0.00027 Score=57.03 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999985
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.02 E-value=0.00046 Score=58.83 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+++|+||+|||||||+..|+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45899999999999999999997654
No 296
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.00 E-value=0.00032 Score=57.85 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|||||||++.|.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.99 E-value=0.00036 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.96 E-value=0.0004 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 299
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.95 E-value=0.00047 Score=54.60 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+..+.|.||+|+||||+++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0004 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.95 E-value=0.00038 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-++|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999999864
No 302
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00051 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+..+.|.||+|+||||+++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44457889999999999999999875
No 303
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.94 E-value=0.00047 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.. .|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3444 5789999999999999999873
No 304
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.94 E-value=0.00034 Score=67.01 Aligned_cols=58 Identities=9% Similarity=0.000 Sum_probs=40.4
Q ss_pred HHHHcchh---hHHhhhhHHHHHHhh-------ccCc--cEEEEecCCC--------CHHHHHHhhhhcCceeEEeeC
Q psy6983 153 CQICSQAL---MYENASRWSLTFQTM-------VQKT--MLEVHLDQPI--------TPIKMMERSIHSARFVLVIEK 210 (210)
Q Consensus 153 ~L~~~gl~---~~~~~~~~s~~~~~~-------~~~P--dl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~~ 210 (210)
.|..+|+. .......+|++.+++ ...| +++|++|||+ .....+++++.+|..++|||.
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 45566664 233456788887664 4567 4999999988 223456689999999999983
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.93 E-value=0.00044 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.92 E-value=0.00045 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.00045 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 308
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.00047 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999875
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.91 E-value=0.00065 Score=51.24 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.-.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34446899999999999999999863
No 310
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.91 E-value=0.00044 Score=59.87 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~ 78 (210)
-+.+|.|||||||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999986
No 311
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.00048 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
No 312
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.91 E-value=0.00044 Score=61.20 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-.++|+|+||||||||++.|.|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999863
No 313
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00036 Score=59.18 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy6983 60 VFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~ 79 (210)
+.|.||+|+||||+++++++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.88 E-value=0.00052 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
No 315
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.88 E-value=0.0005 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.88 E-value=0.00052 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 317
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.87 E-value=0.00049 Score=64.25 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=24.8
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.+.+++.++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 34578899999999999999999999964
No 318
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.87 E-value=0.00051 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.87 E-value=0.00053 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 320
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.86 E-value=0.00059 Score=56.55 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++..+.|.||+|+||||+++++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998754
No 321
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.86 E-value=0.00044 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+.+|+++.|.||+|||||||+..++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999888874
No 322
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.86 E-value=0.00054 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.86 E-value=0.00053 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 324
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.86 E-value=0.00051 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++|+|++|||||||++.|++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999863
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.86 E-value=0.00053 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.85 E-value=0.00055 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 327
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.85 E-value=0.0006 Score=54.13 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
.+|+|.|++||||||+.+.|+..+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 3899999999999999999998776544
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.00052 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.82 E-value=0.00058 Score=52.50 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 330
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.82 E-value=0.00067 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+.|.||+|+|||||++.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999875
No 331
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.82 E-value=0.00055 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 332
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.82 E-value=0.00073 Score=57.95 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=26.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 50 ~~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+..-+.+|+++.|.||+|||||||+..++..
T Consensus 115 LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 115 LGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp TTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345789999999999999999999988863
No 333
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.82 E-value=0.00059 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999875
No 334
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.81 E-value=0.0052 Score=55.54 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcc-----eeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDIT-----AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+.|-+|++.|.-||||+|.++.|...++.. ....|... ...+ ..+|. ....
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~---------------E~~~--~yl~R-----~~~~-- 96 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDE---------------ELER--PPQWR-----FWRR-- 96 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHH---------------HHTS--CTTHH-----HHHH--
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh---------------hccC--Chhhh-----HHHh--
Confidence 667899999999999999999999876532 22222211 0011 01121 1111
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHHcchhhHHhhhhHHHHH---HhhccCccEEEEecCCCCHHHHHHhhhhcCc
Q psy6983 130 DQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTF---QTMVQKTMLEVHLDQPITPIKMMERSIHSAR 203 (210)
Q Consensus 130 ~~~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~~~~~s~~~---~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~r 203 (210)
....+...+++|+-.+.. .+......+.-.++...-++..-+ ...-+.|++.+||+. ++++..+|+.+|..
T Consensus 97 lP~~G~IvIfdRSwYs~~-~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~i--s~eeq~kRl~~R~~ 170 (500)
T 3czp_A 97 LPPKGRTGIFFGNWYSQM-LYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHL--SKKQLKERLKALEK 170 (500)
T ss_dssp CCCTTCEEEEESCHHHHH-HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--CHHHHHHCC-----
T ss_pred CCCCCeEEEEeCchhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEC--CHHHHHHHHHHHhc
Confidence 111234567777766542 112111111101222222222122 223468999999999 99999999998854
No 335
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.80 E-value=0.00058 Score=57.94 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 55778999999999999999999874
No 336
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.80 E-value=0.00061 Score=59.88 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+..+..++|+|++|+|||||++.|.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567778999999999999999999986
No 337
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.79 E-value=0.00064 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999874
No 338
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.79 E-value=0.00067 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.78 E-value=0.00066 Score=51.99 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 340
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.77 E-value=0.00069 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 341
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.77 E-value=0.00069 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 342
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.76 E-value=0.00056 Score=66.05 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHcchh---hHHhhhhHHHHHHhh-------ccCcc--EEEEecCCC--CH------HHHHHhhhhcCceeEEee
Q psy6983 152 QCQICSQAL---MYENASRWSLTFQTM-------VQKTM--LEVHLDQPI--TP------IKMMERSIHSARFVLVIE 209 (210)
Q Consensus 152 ~~L~~~gl~---~~~~~~~~s~~~~~~-------~~~Pd--l~I~Ld~~~--~p------e~~l~Ri~~R~r~~~~~~ 209 (210)
+.|..+|+. ......++|++++++ +..|+ ++|++|||. +| ...+++++..|.++++|+
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 445556664 234466788887664 34555 999999987 33 446677878899999987
No 343
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.75 E-value=0.00085 Score=55.75 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
...+.|.||+|+||||++++|++.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357899999999999999999975
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.75 E-value=0.00078 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 345
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.75 E-value=0.0011 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 346
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.75 E-value=0.00082 Score=58.31 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+..++|+|++||||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999863
No 347
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.75 E-value=0.00064 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+..+.|.||+|+||||+++.++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999875
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.75 E-value=0.00073 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.75 E-value=0.0007 Score=60.16 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++.+++++|++||||||++..|+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.74 E-value=0.00076 Score=50.14 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q psy6983 60 VFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~ 79 (210)
++|+|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.74 E-value=0.00074 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 352
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.00069 Score=60.90 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=23.8
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+.+| +.|.||+|+|||||++++++..+
T Consensus 46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 46 ARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 344554 78999999999999999998654
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.73 E-value=0.00076 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
-|+|+|++|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998764
No 354
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.73 E-value=0.00066 Score=65.88 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=40.3
Q ss_pred HHHHcchh---hHHhhhhHHHHHHhh-------ccC--ccEEEEecCCC--C------HHHHHHhhhhcCceeEEee
Q psy6983 153 CQICSQAL---MYENASRWSLTFQTM-------VQK--TMLEVHLDQPI--T------PIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 153 ~L~~~gl~---~~~~~~~~s~~~~~~-------~~~--Pdl~I~Ld~~~--~------pe~~l~Ri~~R~r~~~~~~ 209 (210)
.|..+|+. .......+|++++++ ... |+++|++|||+ + ....++|++..|.+++|||
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 580 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 35666664 233456788887664 234 68999999998 3 3445678888999999998
No 355
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.72 E-value=0.00065 Score=65.77 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=40.4
Q ss_pred HHHHcchh---hHHhhhhHHHHHHhh-------ccC--ccEEEEecCCC--------CHHHHHHhhhhcCceeEEee
Q psy6983 153 CQICSQAL---MYENASRWSLTFQTM-------VQK--TMLEVHLDQPI--------TPIKMMERSIHSARFVLVIE 209 (210)
Q Consensus 153 ~L~~~gl~---~~~~~~~~s~~~~~~-------~~~--Pdl~I~Ld~~~--------~pe~~l~Ri~~R~r~~~~~~ 209 (210)
.|..+|+. .......+|++++++ ... |+++|++|||+ .....+++++..|.+|+|||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 563 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35666664 233456788888664 233 69999999998 23445678888999999998
No 356
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.72 E-value=0.00078 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 357
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.72 E-value=0.00079 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 358
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.72 E-value=0.00082 Score=55.91 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 359
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.00094 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+.-+.|.||+|+||||+++.++...+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4555788999999999999999998765
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.71 E-value=0.0011 Score=51.96 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|.-+.|.|+||+|||||+..|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 45667999999999999999988765
No 361
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.00084 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.70 E-value=0.00095 Score=58.82 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.+|+|+||+|||||||+..|+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 479999999999999999998653
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.69 E-value=0.00086 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 364
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.68 E-value=0.00085 Score=54.73 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|.+|+|||||++.|.+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999875
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.67 E-value=0.00088 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 366
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.00096 Score=53.71 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~ 78 (210)
.+|+.++|+||+||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 568899999999999999887664
No 367
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.67 E-value=0.00095 Score=56.92 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.0
Q ss_pred CCCe--EEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPF--TVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~--~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..+. .+.|.||+|+|||||++.+++..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445 89999999999999999998753
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.67 E-value=0.0009 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 369
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.66 E-value=0.00086 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+.-.|+|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999975
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.66 E-value=0.00096 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-..++|+|.+|||||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.65 E-value=0.00092 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.505 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-|+|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999987765
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.65 E-value=0.00092 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 373
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.65 E-value=0.00072 Score=58.49 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~ 80 (210)
|+|+|++|+|||||++.|.+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 699999999999999999775
No 374
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.65 E-value=0.00076 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.|+|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.65 E-value=0.00093 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|++|+|||||++.|.+.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.64 E-value=0.00094 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 377
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.63 E-value=0.0069 Score=54.73 Aligned_cols=120 Identities=12% Similarity=0.018 Sum_probs=66.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcc-----eeeccccccccccCcchHHHHHhcccceeeeehhhHhhhHHHHHH
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDIT-----AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHL 129 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vfQ~~~l~~~~~~~~ 129 (210)
+.+-+|++.|.-||||+|.++.|...++.. ....|.... ..+ +++. ....
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E---------------~~~-------~yl~---R~~~ 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEE---------------RAQ-------PYLW---RFWR 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHH---------------HTS-------CTTH---HHHT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhh---------------hcc-------hHHH---HHHH
Confidence 567899999999999999999999876532 222332210 001 1111 1111
Q ss_pred cC-CCCcccccccchhhhHHHHHHHHHHcchhhHHh-hhhHHHHH--HhhccCccEEEEecCCCCHHHHHHhhhhcC
Q psy6983 130 DQ-PITPIKMMERSIHSARWELTQCQICSQALMYEN-ASRWSLTF--QTMVQKTMLEVHLDQPITPIKMMERSIHSA 202 (210)
Q Consensus 130 ~~-~~~~~~~~~~s~~e~~~~~~~~L~~~gl~~~~~-~~~~s~~~--~~~~~~Pdl~I~Ld~~~~pe~~l~Ri~~R~ 202 (210)
.. ..+...+++|+-.+.. .+......+.-.++.. +.+..... ....+.|++.++|+. ++++..+|+.+|.
T Consensus 353 ~lP~~G~i~IfDRswY~~~-~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~i--s~eeQ~~R~~~R~ 426 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRV-LVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAI--DKQTQMERFKERE 426 (500)
T ss_dssp TCCCTTCEEEEESCGGGGG-THHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEC--CHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCcchhhH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEEC--CHHHHHHHHHHHh
Confidence 11 1233467777766642 1121111111112222 22221111 122467999999999 9999999999884
No 378
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.62 E-value=0.0013 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+.-+.|.||+|+||||+++.++...+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334578999999999999999998643
No 379
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.62 E-value=0.00088 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 380
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.62 E-value=0.0011 Score=58.86 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.-+.+|+++.|.|++|+|||||+..++..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999988764
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.001 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999863
No 382
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.62 E-value=0.0011 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+.|.||+|+||||+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.60 E-value=0.0011 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.535 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.001 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.60 E-value=0.0011 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-|+|+|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.60 E-value=0.001 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|||||||++.|.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 388
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.60 E-value=0.001 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.60 E-value=0.0011 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 390
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.59 E-value=0.0012 Score=54.37 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 391
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.58 E-value=0.001 Score=60.36 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++|..|.|+|.|||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999998654
No 392
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.56 E-value=0.0012 Score=50.10 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.|+|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
No 393
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
--|+|+|++|+|||||++.+.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999999874
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.56 E-value=0.0012 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 395
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.55 E-value=0.0012 Score=55.58 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+++|+|.+|+|||||++.|.+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.55 E-value=0.0012 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.55 E-value=0.0015 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|.-++|.|+||+||||++..|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5788999999999999999999875
No 398
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.55 E-value=0.001 Score=56.45 Aligned_cols=29 Identities=21% Similarity=0.175 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.-+.+|+++.|.||+|||||||+..++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 34688999999999999999999988753
No 399
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.54 E-value=0.0013 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 400
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.54 E-value=0.00098 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+..+.|.||+|+|||||++.+++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456889999999999999999875
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0012 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999864
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 403
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.001 Score=51.06 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 404
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0013 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 405
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.51 E-value=0.0013 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 406
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.51 E-value=0.0015 Score=52.91 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCCcce
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGDITA 85 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~i~~ 85 (210)
..+|+|.|++||||||+.+.|+..+++.+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 45899999999999999999998655443
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.51 E-value=0.0013 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 408
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.50 E-value=0.0014 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999999853
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.50 E-value=0.0013 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 410
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.50 E-value=0.0018 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 411
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.50 E-value=0.0017 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 412
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.50 E-value=0.0011 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0014 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
--|+|+|++|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.48 E-value=0.0014 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 415
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.48 E-value=0.0014 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.48 E-value=0.0014 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 417
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.47 E-value=0.0013 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0014 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.|.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 419
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.47 E-value=0.0013 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 420
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.46 E-value=0.0015 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.0015 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.44 E-value=0.0015 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 423
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0015 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 424
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.43 E-value=0.0011 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 425
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.42 E-value=0.00084 Score=54.77 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.|.||+|+||||++++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999975
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.42 E-value=0.0016 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 427
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.42 E-value=0.0018 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.-+.|.||+|+|||++++.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3457899999999999999998763
No 428
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.42 E-value=0.0017 Score=53.79 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|||||||++.|.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 429
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.0019 Score=53.95 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.+..+.|.||+|+|||+|+++++...+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445677889999999999999998654
No 430
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999988764
No 431
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0023 Score=48.90 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-.|+|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.41 E-value=0.0023 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.-.|+|+|++|+|||||++.+.+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34446899999999999999999753
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.41 E-value=0.0017 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 434
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.40 E-value=0.0015 Score=56.89 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++|+|++|+|||||++.|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.--|+|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 335899999999999999999864
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.39 E-value=0.0021 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.-.|+|+|++|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 437
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.39 E-value=0.0017 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|..|||||||++.|.|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 438
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.39 E-value=0.0023 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.-.|+|+|.+|+|||||++.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999988864
No 439
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.38 E-value=0.0017 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.37 E-value=0.0018 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998874
No 442
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.34 E-value=0.0019 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 443
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.33 E-value=0.0023 Score=54.12 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=24.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.-+.+|+++.|.|++|+|||||+..++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3479999999999999999999988874
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.32 E-value=0.0011 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
No 445
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.0019 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+.+|+++.|.|++|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 458899999999999999999988874
No 446
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.002 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 447
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0021 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.|.||+|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999864
No 448
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.28 E-value=0.0025 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+.-+.|.||+|+||||+++.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44456889999999999999988865
No 449
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.0028 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.308 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYF 77 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L 77 (210)
|.++.+.||.||||||++.-+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 678999999999999998433
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.0021 Score=51.33 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFN 78 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~ 78 (210)
+.+|+++.|.|++|+||||++..++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999986554
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.26 E-value=0.0021 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|.+|+|||||++.|.|.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.24 E-value=0.0024 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+++|++|+|||||++.|.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 453
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0022 Score=54.42 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
..+..+.|.||+|+||||+++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999998753
No 454
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.002 Score=54.29 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.+.|.||+|+||||+++.+++.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999875
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.21 E-value=0.0024 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|.+|+|||||++.|.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
No 456
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
No 457
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0026 Score=54.48 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
+.-+.|.||+|+||||++++|+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34578999999999999999998754
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.18 E-value=0.0027 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
....-+.|.||+|+||||+++.++...+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455788999999999999999997643
No 459
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.16 E-value=0.0023 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+..+.|.||+|+|||||++++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999875
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.0032 Score=53.36 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.++.-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 344568899999999999999999765
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.15 E-value=0.0027 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.-.|+|+|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999998875
No 462
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.15 E-value=0.0028 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..++|+|.+|+|||||++.|.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999984
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0027 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 464
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.12 E-value=0.0025 Score=57.18 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 52 VNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 52 ~~~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+.+|+.++|.|+||+|||||++.|+..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 45578899999999999999999988753
No 465
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0029 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.12 E-value=0.0014 Score=62.49 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.0
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 51 ~~~~~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++.+.+++.+.|.||+|+|||||+++|++..+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 44457788899999999999999999998643
No 467
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.11 E-value=0.0012 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-|+|+|++|+|||||++.|.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999885
No 468
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.10 E-value=0.0012 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 469
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.09 E-value=0.003 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 470
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.08 E-value=0.003 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
-|+|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.08 E-value=0.0023 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.+|+|+|++|+||||++..|++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.06 E-value=0.0031 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.-+.|.||+|+||||+++.++...+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999997643
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.05 E-value=0.0031 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999965
No 474
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.03 E-value=0.0039 Score=56.52 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
....+|.++|.+||||||+.+.|+..+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999998753
No 475
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.00 E-value=0.0043 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++..+|+|+|+.|+|||||+..|+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999753
No 476
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0041 Score=55.34 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
++.+|+++|++||||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5789999999999999999999853
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.00 E-value=0.004 Score=55.49 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
....+|.++|.+||||||+++.|+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999875
No 478
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.99 E-value=0.0037 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+|..+.|.||+|+||||+++.++...
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999764
No 479
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.98 E-value=0.0021 Score=47.82 Aligned_cols=24 Identities=42% Similarity=0.701 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
-+.|.||+|+|||++++.++....
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999988654
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.97 E-value=0.0043 Score=52.31 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
++.-+.|.||+|+|||+|+++++...+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 344688999999999999999998644
No 481
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0044 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34558999999999999999999874
No 482
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.96 E-value=0.0041 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
..++++|.+|+|||||++.|.+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 47899999999999999999985
No 483
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.95 E-value=0.0043 Score=53.26 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+.-+.|.||+|+|||||+++++...+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455788999999999999999998755
No 484
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.94 E-value=0.0034 Score=55.72 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
.|+|+|.+|+|||||++.|.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999874
No 485
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.86 E-value=0.0058 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+|.++.+.|+.|+||||++..++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999999998765543
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.86 E-value=0.0043 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
-+.+.||+|+||||+++.|++..+..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 37799999999999999999876543
No 487
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.83 E-value=0.0054 Score=54.24 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 53 NNKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 53 ~~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
-+.+|+++.|.|++|+||||++..++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 368999999999999999999988765
No 488
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.82 E-value=0.0041 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.025 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
+.+|+++.|.|++|+|||||+..++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999988874
No 489
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0048 Score=54.70 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
.++.=+.+.||+|+|||+|++++|+..+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 334457899999999999999999876533
No 490
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.77 E-value=0.0061 Score=52.39 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 54 NKKPFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 54 ~~~g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.+|+++.|.|++|+|||||+..++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999888753
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.76 E-value=0.0047 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 59 TVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 59 ~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
.+.|.||+|+||||+++.++...+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 578999999999999999997654
No 492
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.0074 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNK 79 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~ 79 (210)
.+|.+..+.||.||||||.+--++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~ 30 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIR 30 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 6688999999999999998765554
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.75 E-value=0.006 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q psy6983 57 PFTVFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 57 g~~i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999864
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.75 E-value=0.0057 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.-+.|.||+|+|||++++.++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 457899999999999999998764
No 495
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.74 E-value=0.0071 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
+.+-.++++|.+|+|||||++.|.+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 344579999999999999999999863
No 496
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.74 E-value=0.005 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q psy6983 58 FTVFVEGNIGSGKTTFLDYFNKSGD 82 (210)
Q Consensus 58 ~~i~IiG~sGsGKSTLlk~L~~~~~ 82 (210)
..+.|.||+|+||||+++.|+...+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 497
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0053 Score=54.55 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
.+..=+-+.||+|+|||+|++++|+..+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 444457789999999999999999876543
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.72 E-value=0.0049 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q psy6983 60 VFVEGNIGSGKTTFLDYFNKS 80 (210)
Q Consensus 60 i~IiG~sGsGKSTLlk~L~~~ 80 (210)
+.|+|++||||||++..|+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999854
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.71 E-value=0.007 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCC
Q psy6983 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81 (210)
Q Consensus 56 ~g~~i~IiG~sGsGKSTLlk~L~~~~ 81 (210)
.|.-+.|.|+||+||||++-.|...+
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G 171 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKN 171 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 46679999999999999998887653
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0055 Score=54.41 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhcCCCcc
Q psy6983 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDIT 84 (210)
Q Consensus 55 ~~g~~i~IiG~sGsGKSTLlk~L~~~~~i~ 84 (210)
+.+.=+-+-||+|+|||+|++++|+..+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 444557899999999999999999976533
Done!