RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6983
(210 letters)
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 86.1 bits (214), Expect = 4e-21
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 62 VEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ 121
VEGNIG+GK+T + EPV DV+G+ L YE+ RW+ FQ
Sbjct: 4 VEGNIGAGKSTLAKELAEHLGYEVVPEPVE--PDVEGNPFLEKFYEDPKRWAFPFQLYFL 61
Query: 122 KTMLEVHLD----QPITPIKMMERSIHSARWELTQCQICSQALMYEN 164
+ L+ + D ++ERSI S R + ++A + E
Sbjct: 62 LSRLKQYKDALEHLSTGQGVILERSIFSDR-------VFAEANLKEG 101
Score = 49.9 bits (120), Expect = 1e-07
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 159 ALMYENASRWSLTFQTMVQKTMLEVHLD----QPITPIKMMERSIHSARFVLV 207
YE+ RW+ FQ + L+ + D ++ERSI S R
Sbjct: 43 EKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQGVILERSIFSDRVFAE 95
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 39.4 bits (92), Expect = 7e-04
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS-GD-ITAYAEPVNLWRDVKGHNLLALM 105
++ V K +F+EG +G GKTT L++ GD + + EP+ W +V N L +
Sbjct: 248 LTEYVPYKPACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVY-SNCLKEI 306
Query: 106 YENASRW 112
Y+
Sbjct: 307 YKLVKPG 313
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 36.9 bits (86), Expect = 0.004
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 19/92 (20%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN-LLALMYENASR 111
N V +EG IG+GK+T + + E V N L L YE+ R
Sbjct: 1 MNVAMVIV-IEGMIGAGKSTLAQALAEHLGFKVFYELVE-------DNPFLDLFYEDPER 52
Query: 112 WSLTFQTMV-------QKTMLE---VHLDQPI 133
++ Q K L LD+ I
Sbjct: 53 YAFLLQIYFLLNRFKKIKKALSDKNNILDRSI 84
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 36.2 bits (84), Expect = 0.008
Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 29/171 (16%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNLWRDVKGHNLLALM 105
+ F + + G GSGKT+FL D + + + W + +A +
Sbjct: 13 VEPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHIVY-FDPWLFSGQDDAVASL 71
Query: 106 YEN------ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQA 159
+L + ++ K L + + + ++
Sbjct: 72 LAALADALEEEYSALATKLLIGK-KLLALVIGAKIGGNFGVGTAL--ALTGLVASVEGKS 128
Query: 160 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHS--ARFVLVI 208
L + QT +++ + ++ R V++I
Sbjct: 129 LKLLSIEPL-KKLQTEIEELR------------TDIASTLDDLQKRIVVII 166
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 32.0 bits (74), Expect = 0.12
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 56 KPFTVFVEGNIGSGKTTFLDYFNKSG 81
+ + G IGSGK+T + F + G
Sbjct: 1 MMLIIGLTGGIGSGKSTVANLFAELG 26
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 32.1 bits (74), Expect = 0.12
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 64 GNIGSGKTTFLDYFNKSG------DITA---YAEPVNLWRDVKGH 99
G IGSGK+T + G D A Y + +
Sbjct: 6 GGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEA 50
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 30.4 bits (69), Expect = 0.13
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 59 TVFVEGNIGSGKTTFL 74
+ + G GSGK+T
Sbjct: 1 IIAITGGSGSGKSTVA 16
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and
chromosome partitioning / Cytoskeleton].
Length = 373
Score = 31.5 bits (72), Expect = 0.24
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 42 NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFL 74
N +R FT+ V G G GKTTF+
Sbjct: 8 NLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFI 40
>gnl|CDD|132864 cd07225, Pat_PNPLA6_PNPLA7, Patatin-like phospholipase domain
containing protein 6 and protein 7. Patatin-like
phospholipase domain containing protein 6 (PNPLA6) and
protein 7 (PNPLA7) are 60% identical to each other.
PNPLA6 is commonly known as Neuropathy Target Esterase
(NTE). NTE has at least two functional domains: the
N-terminal domain putatively regulatory domain and the
C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. PNPLA7 is an insulin-regulated
phospholipase that is homologous to Neuropathy Target
Esterase (NTE or PNPLA6) and is also known as
NTE-related esterase (NRE). Human NRE is predominantly
expressed in prostate, white adipose, and pancreatic
tissue. NRE hydrolyzes sn-1 esters in
lysophosphatidylcholine and lysophosphatidic acid, but
shows no lipase activity with substrates like
triacylglycerols (TG), cholesteryl esters, retinyl
esters (RE), phosphatidylcholine (PC), or
monoacylglycerol (MG). This family includes PNPLA6 and
PNPLA7 from Homo sapiens, YMF9 from Yeast, and Swiss
Cheese protein (sws) from Drosophila melanogaster.
Length = 306
Score = 31.2 bits (71), Expect = 0.35
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVN----LWRDVK 97
N+ ++F + I + +L YF + DITA A V+ LWR V+
Sbjct: 104 NRSIHSIFGDKQI---EDLWLPYFTITTDITASAMRVHTDGSLWRYVR 148
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.6 bits (69), Expect = 0.38
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 55 KKPFTVFVEGNIGSGKTTFLD 75
K T+ G GSGKTT LD
Sbjct: 18 SKGLTLIY-GPNGSGKTTILD 37
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 30.7 bits (70), Expect = 0.40
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSG 81
+ + G IGSGK+T + G
Sbjct: 5 IGLTGGIGSGKSTVAKILAELG 26
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 29.7 bits (67), Expect = 0.42
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNL 101
V V G+ GSGK++ L E +++G L
Sbjct: 2 VVVIGDKGSGKSSLLSQL-------VGGEFPPEPLEIQGDTL 36
>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related
GTPases. These proteins are found in bacteria,
eukaryotes, and archaea. They all exhibit a circular
permutation of the GTPase signature motifs so that the
order of the conserved G box motifs is G4-G5-G1-G2-G3,
with G4 and G5 being permuted from the C-terminal region
of proteins in the Ras superfamily to the N-terminus of
YlqF-related GTPases.
Length = 146
Score = 29.7 bits (67), Expect = 0.56
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP--VNLWRDVKGHNLLALM 105
+ KK V V G GK++F++ + + P L +DVK + L
Sbjct: 83 KLKLKYKKGIRVGVVGLPNVGKSSFINALLNKFKLKVGSIPGTTKLQQDVKLDKEIYLY 141
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 30.4 bits (69), Expect = 0.64
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81
+ +PF + + G GKTT L K
Sbjct: 33 LDLRPFIILILGPRQVGKTTLLKLLIKGL 61
>gnl|CDD|165405 PHA03133, PHA03133, thymidine kinase; Provisional.
Length = 368
Score = 30.3 bits (68), Expect = 0.68
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 37 ASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTT----FLDYFNKSGDITAYAEPVNL 92
N+ R ++V+G G GKTT + DI EP+
Sbjct: 20 PGHNNRRAASRPRRQQKASALLRIYVDGPHGLGKTTTAAALAAALGRRDDIEYVPEPMAY 79
Query: 93 WRDVKGHNLLALMYENASR 111
W+ + G +A +++ R
Sbjct: 80 WQVLGGSETIARIFDAQHR 98
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 29.6 bits (67), Expect = 0.80
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSG 81
PF V V G IGSGK+T + + G
Sbjct: 2 RSLPFLVGVTGGIGSGKSTVCRFLAEMG 29
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 27.5 bits (62), Expect = 0.94
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 57 PFTVFVEGNIGSGKTTFLD 75
P + G GSGK+T +D
Sbjct: 21 PKGTLLTGPSGSGKSTLID 39
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 29.7 bits (67), Expect = 1.1
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 5 VGAFKLSGAGALFKCF-PSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVE 63
+ + GAL + H L+ VP + T + S S K V V
Sbjct: 22 ILGLREVEGGALSVARVRTTYHQLVEVPEDRSEPLEEIADTWESKSESAG--KVGVVMVV 79
Query: 64 GNIGSGKTTFLDYF-NKSG 81
G + SGK+T Y NK
Sbjct: 80 GPVDSGKSTLTTYLANKLL 98
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.4 bits (63), Expect = 1.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 60 VFVEGNIGSGKTTF 73
+ + G GSGK+T
Sbjct: 2 ILITGPPGSGKSTL 15
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the
ABC transporter family include the Walker A and Walker
B motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known
as the ABC signature sequence.
Length = 204
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTFLD 75
S + P T+ V G G+GKTT ++
Sbjct: 15 RSEIEFFSPLTLIV-GQNGAGKTTIIE 40
>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 28.7 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 57 PFTVFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNL 92
+ VF G GSGKTT D+ + G A VNL
Sbjct: 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI---VNL 38
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 28.4 bits (64), Expect = 2.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 59 TVFVEGNIGSGKTTFL 74
TV ++G GSGKTT L
Sbjct: 2 TVILQGEAGSGKTTLL 17
>gnl|CDD|217618 pfam03568, Peptidase_C50, Peptidase family C50.
Length = 382
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 21 PSQLHILLSVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVF-VEGNIGSGKTTFLDYFNK 79
PS LH L S + S K +VN+K+ F V +G++ + F +F
Sbjct: 233 PS-LHSLFS-------LLKRRKSQIKPGIVTVNDKRGFYVLNPDGDLPRTQERFRSFFEN 284
Query: 80 SGDITAYAE 88
Sbjct: 285 WNGWKGVVG 293
>gnl|CDD|165410 PHA03138, PHA03138, thymidine kinase; Provisional.
Length = 340
Score = 28.8 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 60 VFVEGNIGSGKTT----FLDYFN-KSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
++++G G GKTT FL F I EP+ WR++ G + + +Y +R
Sbjct: 15 IYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPLMYWRNLAGDDAICGIYGTQTR 71
>gnl|CDD|227326 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 29.0 bits (65), Expect = 2.4
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP 89
M+ +V K + V G GS T DY + AYA P
Sbjct: 737 MTYTVAGGKQYVVISAGGHGSFGTKMGDY------VIAYALP 772
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 27.9 bits (62), Expect = 2.4
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82
+ P +V + G G+GKT+ L +
Sbjct: 17 RRARSGGPPSVLLTGPSGTGKTSLLRELLEGLL 49
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 28.4 bits (64), Expect = 2.6
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 58 FTVFVEGNIGSGKTTFL----DYFNKSGDITAYAE-PVNLWRDVKGHNLLALMYENASRW 112
+ V G GSGKTT L + N + E PV + ++G N + L N
Sbjct: 130 GNILVSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEI--QLEGPNQVQL---NTRLA 184
Query: 113 SLTFQTMVQKTM 124
+TF +++ +
Sbjct: 185 GVTFADLLRAAL 196
>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction
only].
Length = 187
Score = 27.8 bits (62), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFL 74
++S+ N + V G +G+GKTTF+
Sbjct: 1 LTSAANKMIETKIVVIGPVGAGKTTFV 27
>gnl|CDD|188042 TIGR00333, nrdI, ribonucleoside-diphosphate reductase 2, operon
protein nrdI. Ribonucleotide reductases (RNRs) are
enzymes that provide the precursors of DNA synthesis.
The three characterized classes of RNRs differ by their
metal cofactor and their stable organic radical. The
exact function of nrdI within the ribonucleotide
reductases has not yet been fully characterised
[Purines, pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 127
Score = 27.5 bits (61), Expect = 3.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 26 ILLSVPFCFLCASQNHNSTGKRMSSSVN---NKKPFTVFVEGNIGSGKTTFLDYFNKSGD 82
I + P+ +C + T + V NKK + G I SG F D F +GD
Sbjct: 32 IHVDQPYVLICPTYTGGGTAGAVPKQVISFLNKKHNRALLRGVIASGNKNFGDNFGLAGD 91
Query: 83 ITA 85
+ +
Sbjct: 92 VIS 94
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 28.6 bits (64), Expect = 3.1
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 64 GNIGSGKTTFLDYFNKSGDITAYA 87
G GSGKTTFL
Sbjct: 229 GAPGSGKTTFLQRLALWLAQRTLE 252
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 28.2 bits (63), Expect = 3.5
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 56 KPFTVFVEGNIGSGKTTFLD 75
+ V G G+GK++ LD
Sbjct: 25 SGIFLIV-GPNGAGKSSILD 43
>gnl|CDD|129254 TIGR00150, T6A_YjeE, tRNA threonylcarbamoyl adenosine
modification protein YjeE. This protein family belongs
to a four-gene system responsible for the
threonylcarbamoyl adenosine (t6A) tRNA modification.
Members of this family have a conserved
nucleotide-binding motif GXXGXGKT and a
nucleotide-binding fold. Member protein YjeE of
Haemophilus influenzae (HI0065) was shown to have
(weak) ATPase activity [Protein synthesis, tRNA and
rRNA base modification].
Length = 133
Score = 27.4 bits (61), Expect = 3.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYA 87
V ++G++G+GKTT + + I
Sbjct: 25 VLLKGDLGAGKTTLVQGLLQGLGIQGNV 52
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 27.9 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTT 72
T + SS K PF FV G GSGK T
Sbjct: 29 ITLEERGSSSKEKTPFITFVLGGPGSGKGT 58
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 52 VNNKKPFTVFVEGNIGSGKTTFL 74
+ ++K + + G GSGKTTFL
Sbjct: 141 IASRK--NIIISGGTGSGKTTFL 161
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 27.7 bits (62), Expect = 4.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 64 GNIGSGKTTFLDYFN 78
G GSGKTTF+++ N
Sbjct: 40 GQTGSGKTTFIEHLN 54
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the
cells of red pigments, which are synthesized from
guanine, and brown pigments, which are synthesized from
tryptophan. The pigment precursors are encoded by the
white, brown, and scarlet genes, respectively. Evidence
from genetic and biochemical studies suggest that the
White and Brown proteins function as heterodimers to
import guanine, while the White and Scarlet proteins
function to import tryptophan. However, a recent study
also suggests that White may be involved in the
transport of a metabolite, such as 3-hydroxykynurenine,
across intracellular membranes. Mammalian ABC
transporters belonging to the White subfamily (ABCG1,
ABCG5, and ABCG8) have been shown to be involved in the
regulation of lipid-trafficking mechanisms in
macrophages, hepatocytes, and intestinal mucosa cells.
ABCG1 (ABC8), the human homolog of the Drosophila white
gene is induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 27.6 bits (62), Expect = 4.2
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 64 GNIGSGKTTFLDYF--------NKSGDITAYAEPVN--LWRDVKGH 99
G+ GSGKTT LD SG I +P ++ +
Sbjct: 40 GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 27.9 bits (62), Expect = 4.3
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 102 LALMYENA-SRWSLTFQTMVQK---TMLEVHLDQPITPIKMMERSIHSARWELTQCQICS 157
L L+ +A SRW T + + L++ D+ I P + + S W + IC+
Sbjct: 263 LGLVLVHAHSRWIACNSTELSRDVLLDLDLLTDKRIEPSMPLWQFYLSRMWPMDLEYICT 322
Query: 158 QALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHS 201
L AS++ Q + T+ + D + P+ ++ +
Sbjct: 323 LCLAGVLASKYIFFSQGETESTVSLKNGDPVVNPVSTDKKQLEY 366
>gnl|CDD|177538 PHA03136, PHA03136, thymidine kinase; Provisional.
Length = 378
Score = 27.7 bits (61), Expect = 4.5
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 29 SVPFCFLCASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTT----FLDYFNKSGDIT 84
+PFC +N +S +R+ ++++G G+GKTT ++ +
Sbjct: 19 GMPFC--SEFENDDSDFRRL---------VLLYLDGPFGTGKTTTAKLLMEMPDTLAARL 67
Query: 85 AYAEPVNLWRD-VKGHNLLALMYENASR 111
AEP+ WR+ G +++ + E
Sbjct: 68 YLAEPMAAWRNHFGGADMIKEINEIQEL 95
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42)
is a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner
mitochondrial membrane. The main function of the
complex is to transport electrons from NADH to
ubiquinone, which is accompanied by the translocation
of protons from the mitochondrial matrix to the inter
membrane space.
Length = 219
Score = 27.3 bits (61), Expect = 4.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 62 VEGNIGSGKTTF 73
V+GNI SGK
Sbjct: 4 VDGNIASGKGKL 15
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 27.2 bits (61), Expect = 4.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 55 KKPFTVFVEGNIGSGKTTF 73
K V + G++G+GKTT
Sbjct: 23 KAGDVVLLSGDLGAGKTTL 41
>gnl|CDD|218199 pfam04665, Pox_A32, Poxvirus A32 protein. The A32 protein is
thought to be involved in viral DNA packaging.
Length = 241
Score = 27.3 bits (61), Expect = 4.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 NKKPFTVFVEGNIGSGKTTFL 74
PF + + G GSGKTT+L
Sbjct: 10 LAAPFRMAIVGGSGSGKTTYL 30
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 27.5 bits (61), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
Query: 61 FVEGNIGSGKTTFLDYFN-----KSGDI 83
F+ GN GSGK+T + +FN K G I
Sbjct: 56 FIIGNSGSGKSTLVTHFNGLIKSKYGTI 83
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport
systems, ATPase components [Amino acid transport and
metabolism].
Length = 309
Score = 27.3 bits (61), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNK-----SGDITAYAEPVNLWRDVK 97
F V + G GSGKTT L N+ SG+I E ++ V+
Sbjct: 29 FLVLI-GPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE 72
>gnl|CDD|216657 pfam01712, dNK, Deoxynucleoside kinase. This family consists of
various deoxynucleoside kinases cytidine EC:2.7.1.74,
guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and
thymidine kinase EC:2.7.1.21 (which also phosphorylates
deoxyuridine and deoxycytosine.) These enzymes catalyze
the production of deoxynucleotide 5'-monophosphate from
a deoxynucleoside. Using ATP and yielding ADP in the
process.
Length = 146
Score = 26.9 bits (60), Expect = 5.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 172 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARFV 205
QT + + L + ++ERSI+S R++
Sbjct: 1 LQTYFLNSRFKQQLSAARDEVVILERSIYSDRYI 34
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 27.1 bits (60), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGD 82
K+ T F+ G G GK+TFL FN+ D
Sbjct: 30 KREVTAFI-GPSGCGKSTFLRCFNRMND 56
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24.
This enzyme uses ATP in its reaction.
Length = 179
Score = 26.9 bits (60), Expect = 6.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 64 GNIGSGKTTFLDYF 77
G IGSGK+T + F
Sbjct: 7 GGIGSGKSTVANLF 20
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 27.2 bits (61), Expect = 6.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 47 RMSSSVNNKKPFTVFVEGNIGSGKTT 72
R + N ++PF + + G++ GK+T
Sbjct: 72 RFLGTNNQQRPFIIGIAGSVAVGKST 97
>gnl|CDD|223024 PHA03252, PHA03252, DNA packaging tegument protein UL25;
Provisional.
Length = 589
Score = 27.4 bits (61), Expect = 6.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 83 ITAYAEPVNLWRDVKGHNLLALMYENASRWSLTF 116
IT + D +G L+ M+ NA W+ +F
Sbjct: 139 ITQNDPFIRFTTDFRGE-LINTMFNNAQMWTFSF 171
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 58 FTVFVEGNIGSGKTTFLDYF 77
F VE N+G + TFL +F
Sbjct: 194 FVEGVEPNLGKERPTFLYHF 213
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter
that serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the
transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition, to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 242
Score = 26.9 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNK-----SGDITAYAEPVNLWRDVK 97
F V + G GSGKTT + N+ SG+I E + V+
Sbjct: 29 FLVLI-GPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE 72
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 27.2 bits (61), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 60 VFVEGNIGSGKTTFL----DYFNK 79
+ V G GSGK+T L DY NK
Sbjct: 128 ILVTGPTGSGKSTTLAAMIDYINK 151
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 26.6 bits (59), Expect = 7.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 62 VEGNIGSGKTTFLDYFNKSGDIT 84
+ G IGSGK+T +Y
Sbjct: 4 LTGGIGSGKSTVANYLADKYHFP 26
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 27.1 bits (60), Expect = 7.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 38 SQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS 80
+ N ++T +S+N +P V + G++ GKTT LD K+
Sbjct: 227 TSNLDNTSAFTENSIN--RPPIVTILGHVDHGKTTLLDKIRKT 267
>gnl|CDD|234184 TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812) [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 301
Score = 27.0 bits (60), Expect = 8.1
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 129 LDQPITPIKMMERSIHSAR----WELTQCQICSQALMYENASRWSLTFQTMVQKTMLEVH 184
L+ + ++ R W L ++ QA E A + + + ++
Sbjct: 229 LEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA----QQLYAALDQQIQQLG 284
Query: 185 LDQ 187
L +
Sbjct: 285 LAE 287
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 26.5 bits (59), Expect = 8.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 55 KKPFTVFVEGNIGSGKTTFL 74
K +F+ G G GKTT +
Sbjct: 3 KMAMKIFITGRPGVGKTTLV 22
>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is
unkown. The amino acid sequence of YjiA protein in E.
coli contains several conserved motifs that
characterizes it as a P-loop GTPase. YijA gene is among
the genes significantly induced in response to
DNA-damage caused by mitomycin. YijA gene is a
homologue of the CobW gene which encodes the cobalamin
synthesis protein/P47K.
Length = 158
Score = 26.4 bits (59), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 57 PFTVFVEGNIGSGKTTFLDYF 77
P TV + G +G+GKTT L++
Sbjct: 1 PVTV-LTGFLGAGKTTLLNHI 20
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are
polypeptides of 30-65kDa with three characteristic
GTPase motifs (G-1, G-3 and G-4) that are similar to
those of the Ras family. The G-4 motif is strictly
conserved with a unique septin consensus of AKAD. Most
septins are thought to have at least one coiled-coil
region, which in some cases is necessary for
intermolecular interactions that allow septins to
polymerise to form rod-shaped complexes. In turn, these
are arranged into tandem arrays to form filaments. They
are multifunctional proteins, with roles in
cytokinesis, sporulation, germ cell development,
exocytosis and apoptosis.
Length = 280
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 57 PFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEP 89
FT+ V G G GKTT ++ + I P
Sbjct: 4 DFTLMVVGESGLGKTTLINTLFLTDLIPERGIP 36
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 26.4 bits (59), Expect = 9.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 60 VFVEGNIGSGKTTFLD 75
+F+ G G GKTT +
Sbjct: 2 IFITGPPGVGKTTLVK 17
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 26.5 bits (58), Expect = 9.5
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 28/102 (27%)
Query: 64 GNIGSGKTTFLDYFN-----KSGDITAYAEPVNLWRDVKGH-------------NLLALM 105
G+ GSGK+TFL N G I + +NL RD G L ++
Sbjct: 38 GSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97
Query: 106 YENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR 147
+++ + WS T+++ M PI+++ S AR
Sbjct: 98 FQHFNLWS--HMTVLENVME--------APIQVLGLSKQEAR 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.132 0.401
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,046,788
Number of extensions: 853219
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1291
Number of HSP's successfully gapped: 75
Length of query: 210
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 117
Effective length of database: 6,812,680
Effective search space: 797083560
Effective search space used: 797083560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.6 bits)