RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6983
(210 letters)
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 99.0 bits (246), Expect = 7e-26
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 43 STGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKS-GDITAYAEPVNLWRDVKGHNL 101
S ++ + +PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G NL
Sbjct: 6 SCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNL 65
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALM 161
L LMY++ +W++ FQ+ V TML+ H +K+MERSI SAR+ + + +L
Sbjct: 66 LELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLE 125
Query: 162 YENASRWSLTFQTMVQKTMLEVHL 185
+ ++ + + ++ L
Sbjct: 126 QGMYNTLEEWYKFIEESIHVQADL 149
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 94.9 bits (235), Expect = 2e-23
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 34/167 (20%)
Query: 48 MSSSVNN--KKPFTVFVEGNIGSGKTTFLDYFNKS-----GDITAYAEPVNLWRDVKGHN 100
MS+ + ++++G G GKTT + F I EP++ WR++ G +
Sbjct: 1 MSTDKTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGED 60
Query: 101 LLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL 160
+ +Y +R + S A+ Q +
Sbjct: 61 AICGIYGTQTRRLNG------------------------DVSPEDAQRLTAHFQSLFCSP 96
Query: 161 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARFVLV 207
A + M T V +++ I + +R ++
Sbjct: 97 H---AIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFP 140
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 91.7 bits (227), Expect = 2e-22
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 30/123 (24%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG----DITAYAEPVNLWRDVKGHNLLALMYENAS 110
++++G G GK+T + + EP+ WR + ++++ +Y+ +
Sbjct: 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQN 64
Query: 111 RW---------SLTFQTMVQKTML-----------------EVHLDQPITPIKMMERSIH 144
R + Q + + +R
Sbjct: 65 RKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPV 124
Query: 145 SAR 147
++
Sbjct: 125 AST 127
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 85.2 bits (210), Expect = 5e-20
Identities = 24/150 (16%), Positives = 37/150 (24%), Gaps = 32/150 (21%)
Query: 59 TVFVEGNIGSGKTTFLDYFNK---SGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLT 115
V+++G G GKTT DI EP+ WR + +A +Y R
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRL--- 62
Query: 116 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTM 175
E S A +T Q + +
Sbjct: 63 ---------------------DQGEISAGDAAVVMTSAQ-----ITMGMPYAVTDAVLAP 96
Query: 176 VQKTMLEVHLDQPITPIKMMERSIHSARFV 205
P + +R +A
Sbjct: 97 HIGGEAGSSHAPPPALTLIFDRHPIAALLC 126
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 81.4 bits (200), Expect = 5e-19
Identities = 42/186 (22%), Positives = 64/186 (34%), Gaps = 31/186 (16%)
Query: 47 RMSSSVNNKKPFTVFVEGNIGSGKTTFLDYF-NKSGDITAYAEPVNLWRDVK-------- 97
S+S + + +EGNI +GK+TF++ D EPV W +V+
Sbjct: 14 SFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEE 73
Query: 98 -------GHNLLALMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSI 143
G N+L +MYE RWS TFQT + + L P+ ERS+
Sbjct: 74 LTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSV 133
Query: 144 HSAR---WELTQCQICSQALMYENASRWSLTFQTMVQ---KTMLEVHLDQPITPIKMMER 197
+S R C + W + ++L P + R
Sbjct: 134 YSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQAT--PETCLHR 191
Query: 198 SIHSAR 203
R
Sbjct: 192 IYLRGR 197
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 83.0 bits (204), Expect = 5e-19
Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 30/123 (24%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNK---SGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
V+++G G GKTT DI EP+ WR + +A +Y R
Sbjct: 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 106
Query: 112 W---------SLTFQTMVQKTM------------------LEVHLDQPITPIKMMERSIH 144
+ T Q TM P + +R
Sbjct: 107 LDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPI 166
Query: 145 SAR 147
+A
Sbjct: 167 AAL 169
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 80.0 bits (197), Expect = 6e-19
Identities = 15/140 (10%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 62 VEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ 121
+ G +G+GK+T +K + EPV Y++ + Q +
Sbjct: 5 IFGTVGAGKSTISAEISKKLGYEIFKEPVEEN------PYFEQYYKDLKKTVFKMQIYML 58
Query: 122 KTMLEVHLDQPITPIKMMERSIHS--ARWELTQCQICSQALMYENASRWSLTFQTMVQKT 179
+ + +R++ ++ Y + + +V +
Sbjct: 59 TARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDF---YNNVVLEN 115
Query: 180 MLEVHLDQPITPIKMMERSI 199
+ + + S
Sbjct: 116 LKIPENKLSFDIVIYLRVST 135
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 77.9 bits (191), Expect = 8e-18
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 57 PFTVFVEGNIGSGKTTFLDYF-NKSGDITAYAEPVNLWRDVKGH------------NLLA 103
P + +EGNI GK+TF+ + EPV W++++ NLL
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 104 LMYENASRWSLTFQTMVQKTMLEVHLD-------QPITPIKMMERSIHSARW 148
+MY +RWS TFQT + L+V L+ Q P+++ ERS++S R+
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRY 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 32.6 bits (75), Expect = 0.053
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 52 VNNKKPFTVFVEGNIGSGKTTF 73
++ KPF + + G SGKTT
Sbjct: 1 MSAPKPFVIGIAGGTASGKTTL 22
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.6 bits (71), Expect = 0.13
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79
+ V G GSGKTT F +
Sbjct: 6 HHHHHGMASMIVVFVGTAGSGKTTLTGEFGR 36
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 31.0 bits (70), Expect = 0.19
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSG 81
+ + G GSGK+ F + G
Sbjct: 4 ILITGMPGSGKSEFAKLLKERG 25
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 30.6 bits (69), Expect = 0.30
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 53 NNKKPFTVFVEGNIGSGKTTF 73
N +PF + V G SGK++
Sbjct: 18 NGGEPFLIGVSGGTASGKSSV 38
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.2 bits (68), Expect = 0.31
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 38 SQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTF 73
+H+ K F + + G SGKTT
Sbjct: 2 GSSHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTL 37
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.5 bits (69), Expect = 0.33
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 53 NNKKPFTVFVEGNIGSGKTTF 73
+ +PF + V G SGK+T
Sbjct: 21 QSMRPFLIGVSGGTASGKSTV 41
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.6 bits (67), Expect = 0.47
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTTF 73
++ + ++G SGKTT
Sbjct: 15 LAIKTAGRLVLGIDGLSRSGKTTL 38
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 29.5 bits (67), Expect = 0.50
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTTF 73
++ +K V++ G++G+GKTT
Sbjct: 26 LKLHTEKAIMVYLNGDLGAGKTTL 49
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 29.8 bits (68), Expect = 0.50
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSG 81
K P + + GNIGSGK+T G
Sbjct: 2 GHEAKHPIIIGITGNIGSGKSTVAALLRSWG 32
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 29.5 bits (66), Expect = 0.60
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 55 KKPFTVFVEGNIGSGKTTF 73
+ P + V G+ +GKTT
Sbjct: 3 QTPALIIVTGHPATGKTTL 21
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.4 bits (65), Expect = 0.78
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTTFLDY-FNKSGDITAYAEP-VNLWRDVKGHNLLALMYEN 108
+ + FT+ V G G GK+T ++ F Y P + + V+ L+ E
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG 61
Query: 109 ASRWSLTF 116
+ LT
Sbjct: 62 GVQLLLTI 69
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 29.1 bits (66), Expect = 0.82
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 64 GNIGSGKTTFLDYFN-----KSGDITAYAEPVNLW 93
GN GSGK+T L SGD+ E +
Sbjct: 40 GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.4 bits (65), Expect = 1.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 56 KPFTVFVEGNIGSGKTTFLDYF 77
V V G +GKT+F+ Y
Sbjct: 64 GKPMVLVAGQYSTGKTSFIQYL 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.9 bits (65), Expect = 1.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 TVFVEGNIGSGKTTFL 74
V V G GSGKTT++
Sbjct: 173 NVIVCGGTGSGKTTYI 188
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 28.8 bits (65), Expect = 1.3
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSG 81
+ + + G GSGK++ G
Sbjct: 73 SGLYVLGLTGISGSGKSSVAQRLKNLG 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.3
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 60 VFVEGNIGSGKTTF-LDYFNKSGDITAYAEPVNLWRDVKGHN----LLALMYENASRWSL 114
V ++G +GSGKT LD + W ++K N +L ++ L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEML------QKL 205
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENA 165
+Q D + IHS + EL + + S+ YEN
Sbjct: 206 LYQID---PNWTSRSDHSSNI----KLRIHSIQAELRR-LLKSK--PYENC 246
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.6 bits (63), Expect = 1.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 42 NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLD 75
N + SV FT+ V G G GK+T ++
Sbjct: 3 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLIN 36
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.8 bits (65), Expect = 1.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 59 TVFVEGNIGSGKTTFL 74
+ V G GSGKTT +
Sbjct: 177 VIVVAGETGSGKTTLM 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics,
transferase; HET: ATP; 2.00A {Haemophilus influenzae}
SCOP: c.37.1.1
Length = 206
Score = 28.2 bits (64), Expect = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 64 GNIGSGKTTFLDYFNKSG 81
G IGSGKTT + F G
Sbjct: 9 GGIGSGKTTIANLFTDLG 26
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 64 GNIGSGKTTFLDYFNKSG 81
G IGSGK+T + F G
Sbjct: 11 GGIGSGKSTVANAFADLG 28
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 64 GNIGSGKTTFLDYFNKSG 81
GNIG GK+T F + G
Sbjct: 8 GNIGCGKSTVAQMFRELG 25
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.2 bits (62), Expect = 1.7
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 60 VFVEGNIGSGKTTFLD-YFNKSGDITAYAEPVNLW---RDVKGHNLLALMYENASRWSLT 115
V G G GK+T L + + +N A + + S+
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 116 FQTMVQKT 123
Q +Q
Sbjct: 64 KQKKLQID 71
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.1 bits (62), Expect = 1.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNK 79
MS KK + V G+ G+G +T F++
Sbjct: 1 MS-----KKHPIISVTGSSGAGTSTVKHTFDQ 27
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.2 bits (62), Expect = 2.0
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 41 HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLW--RDVKG 98
N + SV FT+ V G G GK+T ++ + + + + V+
Sbjct: 15 ANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV 74
Query: 99 HNLLALMYENASRWSLTF 116
L+ E + LT
Sbjct: 75 EQSKVLIKEGGVQLLLTI 92
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 27.9 bits (63), Expect = 2.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYF 77
++ + V G IG+GK+T +
Sbjct: 8 HHHHHMVIGVTGKIGTGKSTVCEIL 32
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 60 VFVEGNIGSGKTTFL 74
V G SGKTT L
Sbjct: 263 AIVVGETASGKTTTL 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 27.6 bits (62), Expect = 2.6
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 58 FTVFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNLW-----RDVKGHNLL-----A 103
F EG GSGK++ D+ D+ + W ++ K +LL +
Sbjct: 6 LIAF-EGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFS 64
Query: 104 LMYENASRW 112
L++
Sbjct: 65 LIHA-TDFS 72
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.9 bits (61), Expect = 2.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 41 HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLD 75
N + SV FT+ V G G GK+T ++
Sbjct: 21 ANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLIN 55
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 27.6 bits (62), Expect = 2.9
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 37 ASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTT-------FLDYFNKSGDITAYAEP 89
A +H+ G + + F F EG GSGKTT +L ++ EP
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMFITF-EGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREP 60
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.4 bits (61), Expect = 3.1
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 53 NNKKPFTVFVEGNIGSGKTTF 73
V + G GSGK+T
Sbjct: 18 RQPGRQLVALSGAPGSGKSTL 38
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 3.2
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 41 HNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN 100
+ + ++ SV+ F + G G GK+T +D + A V+ +
Sbjct: 26 DSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQ--PGVQLQS 83
Query: 101 LLALMYENASRWSLTF 116
+ E+ R LT
Sbjct: 84 NTYDLQESNVRLKLTI 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 27.6 bits (60), Expect = 3.5
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYF---------NKSGDITAYAEPVNLWRDVKG 98
+ S+ + + ++ S K ++ K I Y ++
Sbjct: 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIH-IDALELAGM 94
Query: 99 HNLLALMYENASRWSLT 115
L ++ S+ +L
Sbjct: 95 DALYEKIWFAISKENLC 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.3 bits (60), Expect = 3.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 48 MSSSVNNKKPFTVFVEGNIGSGKTTFLDYF 77
++ +KP +F+ G G+GKT + +
Sbjct: 36 LAPLYREEKPNNIFIYGLTGTGKTAVVKFV 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.4 bits (60), Expect = 3.8
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTFLDYF 77
V N+ F+ G G+GKT Y
Sbjct: 37 RYFVKNEVKFSNLFLGLTGTGKTFVSKYI 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 27.6 bits (61), Expect = 3.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 56 KPFTVFVEGNIGSGKTTFL 74
+ V G G+GKT F
Sbjct: 38 IGRSTLVSGTSGTGKTLFS 56
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (58), Expect = 4.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTF 73
NK P +F G GSGK+
Sbjct: 23 WFETGNKCPLFIFFSGPQGSGKSFT 47
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.5 bits (58), Expect = 4.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 60 VFVEGNIGSGKTTFL 74
+ + G G GKTT +
Sbjct: 3 IIITGEPGVGKTTLV 17
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.8 bits (60), Expect = 4.8
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFL 74
N G IGSGKT +
Sbjct: 34 NKHGVVAFDFMGAIGSGKTLLI 55
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 26.8 bits (59), Expect = 5.0
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 37 ASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTF 73
++ + ++ + + P+ + + G++ GK+T
Sbjct: 60 SNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTT 96
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFL 74
V + G IGSGKT +
Sbjct: 26 RESGTVAVNIMGAIGSGKTLLI 47
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 26.6 bits (58), Expect = 5.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 60 VFVEGNIGSGKTTFL 74
VF+ G G GKTT +
Sbjct: 4 VFLTGPPGVGKTTLI 18
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 26.2 bits (58), Expect = 6.4
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 48 MSS--SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDV---KGHNLL 102
MS+ N + F + G SGKTT L + E V+L + + L
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62
Query: 103 ALMYENASRWSLTFQ 117
L + F
Sbjct: 63 PLDIGEVKGFKTRFH 77
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 26.4 bits (58), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 TVFVEGNIGSGKTTFL 74
TV + G G+GKTTF
Sbjct: 32 TVLLTGGTGTGKTTFA 47
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 26.6 bits (59), Expect = 6.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 59 TVFVEGNIGSGKTTFL 74
V + G G+GKT F
Sbjct: 25 VVLLSGGPGTGKTIFS 40
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 26.7 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 52 VNNKKPFTVFVEGNIGSGKTT 72
V K PF + + G G GKTT
Sbjct: 288 VEGKAPFVILMVGVNGVGKTT 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 26.2 bits (57), Expect = 7.4
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 42 NSTGKRMSSSVNNKKPFTVFVEGNIGSGKTT 72
+ S + + V V G GSGKTT
Sbjct: 14 GTENLYFQSMMTGEPTRHVVVMGVSGSGKTT 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 26.4 bits (59), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 67 GSGKTTFLDYFNK-----SGDITAYAEPVNLWRDVKGHNLLA 103
GSGK+TFL N G I + +NL RD G +A
Sbjct: 42 GSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 8.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 54 NKKPFTVFVEGNIGSGKTTFL 74
+ F + V G++ GK+TFL
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFL 86
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 26.1 bits (58), Expect = 8.7
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 56 KPFTVFVEGNIGSGKTTFLD 75
+ + + G GSGK++ LD
Sbjct: 23 EGINLII-GQNGSGKSSLLD 41
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 26.1 bits (58), Expect = 9.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 59 TVFVEGNIGSGKTTFL 74
+ + G G+GKT F
Sbjct: 25 FIALTGEPGTGKTIFS 40
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 26.0 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTT 72
+V + PF + V G G+GKTT
Sbjct: 98 NVPPEPPFVIMVVGVNGTGKTT 119
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.0 bits (57), Expect = 9.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 39 QNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTFLD 75
N S S + +K + G GSGK++ +
Sbjct: 11 NNFKSHVN---SRIKFEKGIVAII-GENGSGKSSIFE 43
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 25.4 bits (56), Expect = 9.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 64 GNIGSGKTTFLD 75
G GSGK++ LD
Sbjct: 30 GQNGSGKSSLLD 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.132 0.401
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,975,193
Number of extensions: 152018
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 69
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.4 bits)