RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6983
(210 letters)
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 70.8 bits (173), Expect = 3e-15
Identities = 15/122 (12%), Positives = 39/122 (31%), Gaps = 30/122 (24%)
Query: 56 KPFTVFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASR 111
++++G G GK+T + + EP+ WR + ++++ +Y+ +R
Sbjct: 5 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNR 64
Query: 112 W-------------SLTFQTMVQKTMLEVH-------------LDQPITPIKMMERSIHS 145
+ +Q+ L +H + +R +
Sbjct: 65 KQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVA 124
Query: 146 AR 147
+
Sbjct: 125 ST 126
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 70.8 bits (173), Expect = 3e-15
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 32/151 (21%)
Query: 60 VFVEGNIGSGKTTFL----DYFNKSG-DITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
++++G G GKTT +F + I EP++ WR++ G + + +Y +R
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLN 67
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
+ S A+ Q + ++ S
Sbjct: 68 G------------------------DVSPEDAQRLTAHFQSLFCSPHAIMHAKIS---AL 100
Query: 175 MVQKTMLEVHLDQPITPIKMMERSIHSARFV 205
M T V +++ I + +R ++
Sbjct: 101 MDTSTSDLVQVNKEPYKIMLSDRHPIASTIC 131
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 65.0 bits (158), Expect = 3e-13
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 33/168 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNK---SGDITAYAEPVNLWRDVKGHNLLALMYENASRW---- 112
V+++G G GKTT DI EP+ WR + +A +Y R
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGE 66
Query: 113 ---------SLTFQTMVQKTMLEVHLDQ--------------PITPIKMMERSIHSARWE 149
+ Q + P + +R +A
Sbjct: 67 ISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLC 126
Query: 150 LTQCQICSQALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMER 197
+ ++ + + + T + V P + ++R
Sbjct: 127 YPAARYLMGSMTPQAVLAFVALIPPTLPGTNI-VLGALP--EDRHIDR 171
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 62.0 bits (149), Expect = 1e-12
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKS-GDITAYAEPVNLWRDVKGHNLLALMYENASR 111
+PFTV +EGNIGSGKTT+L++F K DI EPV WR+V G NLL LMY++ +
Sbjct: 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKK 64
Query: 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLT 171
W++ FQ+ V TML+ H +K+MERSI SAR+ + + +L +
Sbjct: 65 WAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEW 124
Query: 172 FQTMVQKTMLEVHLD 186
++ + + ++ L
Sbjct: 125 YKFIEESIHVQADLI 139
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 53.9 bits (128), Expect = 2e-09
Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 62 VEGNIGSGKTTFLDYF-NKSGDITAYAEPVNLWRDVK---------------GHNLLALM 105
+EGNI +GK+TF++ D EPV W +V+ G N+L +M
Sbjct: 7 IEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMM 66
Query: 106 YENASRWSLTFQTMV-------QKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQ 158
YE RWS TFQT Q L L P+ ERS++S R+ S+
Sbjct: 67 YEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESE 126
Query: 159 ALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR 203
+ + + M + + LD I E +H
Sbjct: 127 CMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIY 171
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 50.4 bits (119), Expect = 2e-08
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 16/159 (10%)
Query: 57 PFTVFVEGNIGSGKTTFLDYF-NKSGDITAYAEPVNLWRDVK------------GHNLLA 103
P + +EGNI GK+TF+ + EPV W++++ NLL
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 104 LMYENASRWSLTFQTMVQKTMLEVHLDQPITPI---KMMERSIHSARWELTQCQICSQAL 160
+MY +RWS TFQT + L+V L+ + + + + + +
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFE 121
Query: 161 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSI 199
+ +Q + E + ++ S
Sbjct: 122 NGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASP 160
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 36.5 bits (83), Expect = 0.001
Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 3/156 (1%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
K P + + GNIGSGK+T G + L + + L
Sbjct: 1 KHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLD--ALAARARENKEEELKRLFPEAVVG 58
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
L + + ++ + ++ + + E + ++
Sbjct: 59 GRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEG 118
Query: 175 MVQKTMLEVHLDQPITPIKMMERSIHSARFVLVIEK 210
L V ++M RS S VL E+
Sbjct: 119 R-LHGTLLVAAPLEERVRRVMARSGLSREEVLARER 153
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 36.3 bits (82), Expect = 0.001
Identities = 11/149 (7%), Positives = 37/149 (24%), Gaps = 2/149 (1%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENAS 110
++ + ++G SGKTT + +++ + V D N
Sbjct: 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEE 75
Query: 111 RWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSAR--WELTQCQICSQALMYENASRW 168
+ + + + Q ++ + ++
Sbjct: 76 WFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFL 135
Query: 169 SLTFQTMVQKTMLEVHLDQPITPIKMMER 197
++ + + I + ++
Sbjct: 136 QRKEWRPFFDFVVYLDCPREIRFARENDQ 164
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 33.3 bits (75), Expect = 0.012
Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 12/152 (7%)
Query: 58 FTVFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVN-LWRDVKGHNLLALMYENASRW 112
+ EG +GKTT + + + E + + + +
Sbjct: 5 LILI-EGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAI 63
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTF 172
L F + + ++ D +M+R ++S + W L
Sbjct: 64 HLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYS------GVAYSAAKGTNGMDLDWCLQP 117
Query: 173 QTMVQKTMLEVHLDQPITPIKMMERSIHSARF 204
+ K L + L + R+
Sbjct: 118 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY 149
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 32.6 bits (73), Expect = 0.020
Identities = 23/159 (14%), Positives = 41/159 (25%), Gaps = 8/159 (5%)
Query: 58 FTVFVEGNIGSGKTTFL----DYFNKSG--DITAYAEPVNLWRDVKGHNLLALMYENASR 111
+ V EG G+GKTT + + G D+ EP K +LL L ++
Sbjct: 4 YIVI-EGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLL-LDIKSVGD 61
Query: 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLT 171
+T + V + Q T
Sbjct: 62 EVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLAT 121
Query: 172 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARFVLVIEK 210
+ V ++ + + + IE+
Sbjct: 122 LRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ 160
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 32.5 bits (73), Expect = 0.021
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 50 SSVNNKKPFTVFVEGNIGSGKTT----FLDYFNKSGDITAYAEPVNLWRDVKGHNL 101
+ + N++ T+++ G SGK+T + + AY + R +L
Sbjct: 17 TELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDL 72
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.0 bits (71), Expect = 0.035
Identities = 14/155 (9%), Positives = 33/155 (21%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
KK + G +GKTT L ++ + ++
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 70
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
+ + L + + + ++
Sbjct: 71 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130
Query: 175 MVQKTMLEVHLDQPITPIKMMERSIHSARFVLVIE 209
++ L T + +AR + V
Sbjct: 131 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 165
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 31.6 bits (70), Expect = 0.053
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 62 VEGNIGSGKTTFL----DYFNKSG-DITAYAEPVNLWRDVKGHNLLALMYENASRWSLTF 116
+EG G+GK T + F +G + A P AL E+ S +
Sbjct: 5 IEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVY 64
Query: 117 QTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL 160
+ I + + R+ + + L
Sbjct: 65 AMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARL 108
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 31.0 bits (69), Expect = 0.069
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81
+ V + G IGSGK+T + F G
Sbjct: 3 RYIVALTGGIGSGKSTVANAFADLG 27
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 30.2 bits (67), Expect = 0.11
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 57 PFTVFVEGNIGSGKTTFLDYFNKSG 81
+ V + G IGSGKTT + F G
Sbjct: 2 TYIVGLTGGIGSGKTTIANLFTDLG 26
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 29.5 bits (65), Expect = 0.23
Identities = 15/133 (11%), Positives = 30/133 (22%), Gaps = 9/133 (6%)
Query: 64 GNIGSGKTTFLDYFNKSGDIT--AYAEPVNLWRDVKGHNLLALMYENASRWSLTFQ-TMV 120
G SGK T D+ + A P+ A
Sbjct: 8 GVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYD 67
Query: 121 QKTMLEVHLDQPI----TPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMV 176
++T L + + I + + + + + A +
Sbjct: 68 RETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEG--KESVNFVAFNKITDVINNI 125
Query: 177 QKTMLEVHLDQPI 189
+ L Q +
Sbjct: 126 EDQWSVRRLMQAL 138
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.24
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 14/132 (10%)
Query: 60 VFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLT 115
V V G G G TT D K G ++ +V L + +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 116 FQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTM 175
Q +QK + ++ + W L
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHSTV----------STPKGYLPGLPSWVLNELNP 113
Query: 176 VQKTMLEVHLDQ 187
++E D+
Sbjct: 114 DLIIVVETTGDE 125
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.28
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHN 100
N + V + G +GKTT L F+ + + + ++ +N
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 0.30
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 56 KPFTVFVEGNIGSGKTTFLDYF-NKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
+P ++ + G SGKT+ L S T ++ D G + + + +
Sbjct: 3 QP-SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQ 152
++ V + + + + + L
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 99
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 29.3 bits (65), Expect = 0.32
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 37 ASQNHNSTGKRMSSSVNNKKPFTVFVEGNIGSGKTTF 73
++ + ++ + + P+ + + G++ GK+T
Sbjct: 60 SNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTT 96
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.9 bits (64), Expect = 0.36
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 52 VNNKKPFTVFVEGNIGSGKTTFL 74
V K PF + + G G GKTT +
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTI 26
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.0 bits (64), Expect = 0.41
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDY 76
NK P +F G GSGK+
Sbjct: 23 GNKCPLFIFFSGPQGSGKSFTSIQ 46
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.8 bits (63), Expect = 0.43
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 57 PFTVFVEGNIGSGKTTF 73
PF + V G SGK++
Sbjct: 2 PFLIGVSGGTASGKSSV 18
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.1 bits (62), Expect = 0.56
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 45 GKRMSS---SVNNKKPFTVFVEGNIGSGKTTF 73
GK+ + ++ +K V++ G++G+GKTT
Sbjct: 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTL 49
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.4 bits (62), Expect = 0.61
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 60 VFVEGNIGSGKTTFLDYFNK 79
V G GSGKTT F +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 0.64
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 47 RMSSSVNNKKPFTVFVEGNIGSGKTTFL-----DYFNKSGDITAYAEPVNLWRDVKGHNL 101
++ S + K + + G +GKTT L + + +++VK +
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 102 LALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMME 140
+ + T Q + V + +
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.0 bits (61), Expect = 0.84
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 59 TVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQT 118
+ G G+GKT + F + A + NA W + F+
Sbjct: 28 IILATGATGTGKTLLVSRF-----VENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 82
Query: 119 MVQKTMLEV-HLDQPITPIKMMERSIHSARWEL 150
M ++ +L++ ++ + I S +
Sbjct: 83 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDF 115
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 0.92
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 52 VNNKKPFTVFVEGNIGSGKTTFL 74
+ +K P+ + + G G+GK T
Sbjct: 7 IPDKIPYVIMLVGVQGTGKATTA 29
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.7 bits (60), Expect = 0.94
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 47 RMSSSVNNKKPFTVFVEGNIGSGKTT 72
++ + + TV++ G G+GKTT
Sbjct: 9 QVVGTRGGFRGCTVWLTGLSGAGKTT 34
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.2 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDY 76
N T+ G +G+GKTT L +
Sbjct: 1 NPIAVTLLT-GFLGAGKTTLLRH 22
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.5 bits (60), Expect = 1.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDYF 77
+ V + G G GK+T +D
Sbjct: 48 TGRAIRVGITGVPGVGKSTTIDAL 71
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.0 bits (59), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTTFL 74
+V + PF + V G G+GKTT
Sbjct: 5 NVPPEPPFVIMVVGVNGTGKTTSC 28
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.9 bits (58), Expect = 1.4
Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 10/143 (6%)
Query: 60 VFVEGNIGSGKTTFLD-----YFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
+ + G G GKTT + ++ + G ++ + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 115 TFQTMVQKTMLEVHLDQPITPIKM-MERSIHSARWELTQCQIC----SQALMYENASRWS 169
F + V++ +ER+ A+ + + I L +
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 170 LTFQTMVQKTMLEVHLDQPITPI 192
++ + + P+
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPL 145
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 26.8 bits (58), Expect = 1.5
Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 10/151 (6%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
KK +FV G GSGK T + + T + G L A + ++R +
Sbjct: 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLS---------TGDLLRAEVSSGSARGKM 56
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
+ M + ++ + + M+ + S + L E +
Sbjct: 57 LSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGF-LIDGYPREVKQGEEFERKIGQPTLL 115
Query: 175 MVQKTMLEVHLDQPITPIKMMERSIHSARFV 205
+ E + + + R + +
Sbjct: 116 LYVDAGPETMTKRLLKRGETSGRVDDNEETI 146
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYF 77
KK + V G+ G+G +T F
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTF 24
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 1.7
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 11/137 (8%)
Query: 60 VFVEGNIGSGKTTFLD----YFNKSGDITA--YAEPVNLWRDVKGHNLLAL-----MYEN 108
VF+ G G GKTT + SG Y E V G +++ L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 109 ASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRW 168
+ + V L + R+ + + + + E S+
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 169 SLTFQTMVQKTMLEVHL 185
+ T + L
Sbjct: 124 FIQAVRQTLSTPGTIIL 140
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.6 bits (57), Expect = 1.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 54 NKKPFTVFVEGNIGSGKTT 72
+ FT+F+ G + SGK
Sbjct: 3 ATQGFTIFLTGYMNSGKDA 21
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 26.5 bits (57), Expect = 2.3
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 56 KPFTVFVEGNIGSGKTTFLD 75
+ T G G+GK+T +
Sbjct: 24 ELVTTLS-GGNGAGKSTTMA 42
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.5 bits (57), Expect = 2.3
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 2/142 (1%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
KP VFV G GSGK T + + L ++ + + M +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
++V +L+ +D K E + +
Sbjct: 64 IVPSIVTVKLLKNAIDANQG--KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPE 121
Query: 175 MVQKTMLEVHLDQPITPIKMME 196
V L + +E
Sbjct: 122 EVMTQRLLKRGESSGRSDDNIE 143
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.2 bits (57), Expect = 2.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 54 NKKPFTVFVEGNIGSGKTTFL 74
K V V G G GKTT +
Sbjct: 3 EPKGRVVLVVGVNGVGKTTTI 23
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 2.4
Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 11/123 (8%)
Query: 54 NKKPFTVFVEGNIGSGKTTF---------LDYFNKSGDITAYAEPVNLWRDVKGHNLLAL 104
+ + + G+ GSGK+T + + D + R
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD--LWGYIKHGRIDPWLPQSHQ 58
Query: 105 MYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYEN 164
+ + K V LD + P + + + + + +
Sbjct: 59 QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERC 118
Query: 165 ASR 167
R
Sbjct: 119 LDR 121
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.0 bits (56), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 49 SSSVNNKKPFTVFVEGNIGSGKTTF 73
SSS+ + P V G G+GK+TF
Sbjct: 6 SSSLLSPNPEVVVAVGFPGAGKSTF 30
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 26.4 bits (57), Expect = 2.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 54 NKKPFTVFVEGNIGSGKTTFLDYF 77
+ V G G+GK+TFL+ F
Sbjct: 51 CGNTLRLGVTGTPGAGKSTFLEAF 74
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.1 bits (56), Expect = 2.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAY 86
+ K + + G G+GKTT L +T
Sbjct: 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK 46
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.3 bits (56), Expect = 3.0
Identities = 6/94 (6%), Positives = 19/94 (20%), Gaps = 1/94 (1%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119
+ G +GKT + + + E + +
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 84
Query: 120 VQKTMLEVHLDQPITPIKMMERSIHSARWELTQC 153
+ V + + ++ +
Sbjct: 85 GSDVLDNVAYARAFNTDHQTQLLYQASAMMVESR 118
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 3.2
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 12/108 (11%)
Query: 60 VFVEGNIGSGKTTFLDYF-------NKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112
V G SGKT ++ + A L+ L + R+
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQAL 160
L + + +D +R + L Q I S AL
Sbjct: 63 QLLDRFKSSARAVVFVVD-----SAAFQREVKDVAEFLYQVLIDSMAL 105
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.1 bits (56), Expect = 3.4
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 55 KKPFTVFVEGNIGSGKTT 72
++ + +EG +GK+T
Sbjct: 1 RRGALIVLEGVDRAGKST 18
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.5 bits (54), Expect = 3.6
Identities = 9/109 (8%), Positives = 28/109 (25%), Gaps = 2/109 (1%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119
+ G GSGK+T+ F + + + H + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 120 VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRW 168
+ L + ++ + + ++ ++ +
Sbjct: 65 --FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKV 111
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.0 bits (57), Expect = 3.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 58 FTVFVEGNIGSGKTTFLDYFNK-----SGDITAYAEPVNLWRDVKGHNLLA---LMYENA 109
+ G+ GSGK+TFL N G I + +NL RD G +A +
Sbjct: 30 VISII-GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 88
Query: 110 SRWSLTFQ 117
+R ++ FQ
Sbjct: 89 TRLTMVFQ 96
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.4 bits (54), Expect = 4.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 56 KPFTVFVEGNIGSGKTTFLDYFNK 79
+ + + G +GKTT L FN
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNG 24
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 25.7 bits (55), Expect = 4.7
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 8/150 (5%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAE--PVNLWRDVKGHNLLALMYENASRWSLTFQ 117
V V G+ G+GK+T + E PV+ + ++ N R
Sbjct: 31 VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVV 90
Query: 118 TMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQ 177
+ + E + + + + + + L + E + +
Sbjct: 91 D-LPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDE-----CNLLEDHIV 144
Query: 178 KTMLEVHLDQPITPIKMMERSIHSARFVLV 207
+L+V + H ARFVLV
Sbjct: 145 DLLLDVAQSGENVVERDGLSIRHPARFVLV 174
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.3 bits (54), Expect = 4.8
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 58 FTVFVEGNIGSGKTTFL-----DYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRW 112
F V + G+ G GK++ + + F+ T E +N +V GH + +++ A +
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 113 SLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQ 152
+ L +++ + + E
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 106
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.4 bits (54), Expect = 4.9
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 6/99 (6%)
Query: 64 GNIGSGKTTFLDYF--NKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTMVQ 121
G +GKTT L ++ + P + + + ++
Sbjct: 7 GLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFP 66
Query: 122 KTMLE----VHLDQPITPIKMMERSIHSARWELTQCQIC 156
+ D +E EL
Sbjct: 67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 105
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 25.1 bits (55), Expect = 5.1
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 107 ENASRWSLTFQTMVQKTMLEVHLDQPITP--IKMMERSIHSARWELTQCQICSQALMYEN 164
ENA +W ++K +VH ++ +E I L Q Q S + + E
Sbjct: 9 ENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEER 68
Query: 165 ASRW 168
+
Sbjct: 69 VQKS 72
Score = 24.8 bits (54), Expect = 6.2
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 163 ENASRWSLTFQTMVQKTMLEVHLDQPITPIKM 194
ENA +W ++K +VH +
Sbjct: 9 ENAPKWRGLLVPALKKVQGQVHPTLESNDDAL 40
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 25.0 bits (53), Expect = 5.5
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 54 NKKPFTVFVEGNIGSGKTTF 73
N + G GSGK+
Sbjct: 3 NHDHHIYVLMGVSGSGKSAV 22
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.1 bits (55), Expect = 5.7
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 46 KRMSSSVNNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDV 96
+ ++ + + P+ +E I + ++D+FNK+ IT + L V
Sbjct: 75 EDLTPAAKTELPY--VIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGV 123
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/138 (8%), Positives = 27/138 (19%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119
V + G SGK+ ++ + T+ E + K M +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69
Query: 120 VQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQTMVQKT 179
+ + ++E + L
Sbjct: 70 YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129
Query: 180 MLEVHLDQPITPIKMMER 197
L + +
Sbjct: 130 DGLRSLGSQKQRQQFQQL 147
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.0 bits (53), Expect = 6.4
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 60 VFVEGNIGSGKTTFL----DYFNKSGDITAYAEPVNLWRDVKGHNLLALMYEN 108
V G G GK+T L + + G + A +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDE 56
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 25.3 bits (54), Expect = 6.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 55 KKPFTVFVEGNIGSGKTTF 73
+ P + G GSGKT+
Sbjct: 30 ESPTAFLLGGQPGSGKTSL 48
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.1 bits (54), Expect = 6.9
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITA 85
+ + + G SGK+T + + +
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQM-RILHVVL 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 24.7 bits (52), Expect = 6.9
Identities = 15/128 (11%), Positives = 39/128 (30%)
Query: 55 KKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSL 114
+ + + G G+GKTT L +T V NL +++ S+
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 115 TFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLTFQT 174
+ + + + + S + + + +A++ A++ +
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 175 MVQKTMLE 182
+
Sbjct: 123 TSSEMANS 130
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
5507]}
Length = 400
Score = 25.2 bits (55), Expect = 7.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 40 NHNSTGKRMSSSVNNKKPFTV---FVEGNIGS 68
+ G+ V++ + FTV FV G
Sbjct: 248 VTDFYGRGKQYKVDSTRKFTVTSQFVANKQGD 279
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 24.6 bits (52), Expect = 7.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 56 KPFTVFVEGNIGSGKTT 72
K + + G G+GKT+
Sbjct: 4 KGINILITGTPGTGKTS 20
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 24.6 bits (52), Expect = 7.7
Identities = 14/74 (18%), Positives = 22/74 (29%)
Query: 60 VFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALMYENASRWSLTFQTM 119
+ G G GK+T D +AY E + V G + + T
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 120 VQKTMLEVHLDQPI 133
+ L D +
Sbjct: 65 LTVNFLLAQNDVVL 78
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
34413]}
Length = 399
Score = 25.2 bits (55), Expect = 7.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 40 NHNSTGKRMSSSVNNKKPFTV---FVEGNIGS 68
+ G+ VN KPFTV F+ G
Sbjct: 248 VTDYYGRGEEFKVNTLKPFTVVTQFLANRRGK 279
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 25.2 bits (53), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 51 SVNNKKPFTVFVEGNIGSGKTTFLD 75
V K+ + + G GSGK++ LD
Sbjct: 18 VVEFKEGINLII-GQNGSGKSSLLD 41
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 122
Score = 24.3 bits (53), Expect = 8.1
Identities = 2/19 (10%), Positives = 9/19 (47%)
Query: 54 NKKPFTVFVEGNIGSGKTT 72
K+ F++ + ++ +
Sbjct: 3 PKQGFSIVLGNSLTVSREQ 21
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 24.9 bits (54), Expect = 9.1
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 93 WRDVKGHNLLALMYENASRWSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELT 151
W++V + + L + + T ++V + + I+ H+++W T
Sbjct: 14 WKNVPSNYHYCPSSSD-----LNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTT 67
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 24.6 bits (52), Expect = 9.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 56 KPFTVFVEGNIGSGKTT 72
K + ++G SGK+T
Sbjct: 2 KTIQIAIDGPASSGKST 18
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 24.9 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 56 KPFTVFVEGNIGSGKTTFLD 75
K FT V G GSGK+ D
Sbjct: 26 KGFTAIV-GANGSGKSNIGD 44
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.3 bits (51), Expect = 9.5
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 2/124 (1%)
Query: 53 NNKKPFTVFVEGNIGSGKTTFLDYFNKSGDITAYAEPVNLWRDVKGHNLLALM-YENASR 111
F V G GK+T L+ P + ++G
Sbjct: 2 KTYSGFVAIV-GKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60
Query: 112 WSLTFQTMVQKTMLEVHLDQPITPIKMMERSIHSARWELTQCQICSQALMYENASRWSLT 171
L ++ + + + + + + + ++ ++AL L
Sbjct: 61 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 120
Query: 172 FQTM 175
Sbjct: 121 VGNK 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.132 0.401
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 725,655
Number of extensions: 29794
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 103
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.2 bits)