BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6984
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/378 (58%), Positives = 265/378 (70%), Gaps = 60/378 (15%)
Query: 1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
M TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L
Sbjct: 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 82
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
+GHSHF+SD+V+SSDG +ALSGSWD TLRLWDL G TTRRF HTKDVLSVAFS DNRQ
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
IVS SRDKTIKLWNTL CK+T+ ++ HS+WVSCVRFSPN NPIIVS GWD++VKVWNL
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
NCKLK NH GHTGYLNTVTVSPDGSLCASGGKD AMLWDLN+GKHL
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------------ 250
Query: 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
Y ++ G D+++ NR + +
Sbjct: 251 --------------------------YTLDGG-----------DIINALCFSPNRYWLCA 273
Query: 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF 360
+ +IK+W DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLF
Sbjct: 274 ATGPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 361 AGYSDNTIRVWQVSVTSR 378
AGY+DN +RVWQV++ +R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)
Query: 3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
HSHF+SD+V+SSDG +ALSGSWD TLRLWDL G TTRRF HTKDVLSVAFS DNRQIV
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
S SRDKTIKLWNTL CK+T+ ++ HS+WVSCVRFSPN NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
CKLK NH GHTGYLNTVTVSPDGSLCASGGKD AMLWDLN+GKHL
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227
Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
Y ++ G D+++ NR + ++
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252
Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
+IK+W DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301
Query: 363 YSDNTIRVWQVSVTSR 378
Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 240/381 (62%), Gaps = 72/381 (18%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
L L+GT+ H VT IAT D I+S SRD ++I+WKLT+DD YGV Q+RL GHSH
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
F+ D+VLSSDG +ALSGSWD LRLWDLAAG +TRRF HTKDVLSVAFS+DNRQIVS+S
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491
Query: 126 RDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
RD+TIKLWNTL CK+TI E +GH DWVSCVRFSPN P IVSA WD+ VKVWNL+NC
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS 243
KL+ +GHTGY++TV VSPDGSLCASGGKD +LWDL +GK L++L N +I ALCFS
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303
PNR + + HG
Sbjct: 612 PNRYW----------------LCAATEHG------------------------------- 624
Query: 304 KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD---PP-------MCLSLAWS 353
IK+W+ LE+K +VE+L+ D+ +++ KAD P C SL WS
Sbjct: 625 --IKIWD-----------LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 354 TDGQTLFAGYSDNTIRVWQVS 374
DG TLF+GY+D IRVW +
Sbjct: 672 ADGSTLFSGYTDGVIRVWGIG 692
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 291 bits (744), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 211/377 (55%), Gaps = 70/377 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDT---ILSCSRDNTLIIWKLTRD----DTNYGVPQ 57
+ G L GH GWVT +A P+ P+T ++S SRD TL+ W D + +YG+P
Sbjct: 2 AVAYEGQLTGHRGWVTSLAC-PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPD 60
Query: 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD 117
+RL+GHS F+SD+ LS++GN+A+S SWD +LRLW+L G+ +F HTKDVLSVAFS D
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 118 NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
NRQIVS RD +++WN C T+ H+DWVSCVRFSP+ P+IVS GWD +VKV
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
W+L +L + GHT Y+ +VTVSPDGSLCAS KD A LWDL G+ L + I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297
+CFSP NR
Sbjct: 241 NQICFSP-------------------------------------------------NRYW 251
Query: 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ 357
+ ++ +K I+ I DLE K ++ EL P+ Q +K P C+S+AWS DG
Sbjct: 252 MCAATEKGIR-----------IFDLENKDIIVELAPE--HQGSKKIVPECVSIAWSADGS 298
Query: 358 TLFAGYSDNTIRVWQVS 374
TL++GY+DN IRVW VS
Sbjct: 299 TLYSGYTDNVIRVWGVS 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S E L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + K
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GHSH + D L++DG YALS SWDKTLRLWD+A G+T +RF H DV+SV I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
+S SRDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+MVK
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
WNL +++ + GH +NT+T SPDG+L AS GKD MLW+L K ++TL D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
+L FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
+ + + D I++W +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
V + D +S+S DKT++LW+ + SD +S + + +I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
D+ +KVW + L GH +++ V V P D S G D W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
N + + HN I L SP+ + I+ + ++L+ + K S
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
+V S+AFS NR ++++ IK+++ L+ + +V++LRP+ S
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYSAA 284
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
A+P +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 285 AEP-HAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S E L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + K
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GHSH + D L++DG YALS SWDKTLRLWD+A G+T +RF H DV+SV I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
+S SRDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+MVK
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
WNL +++ + GH +NT+T SPDG+L AS GKD MLW+L K ++TL D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
+L FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
+ + + D I++W +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 154/332 (46%), Gaps = 37/332 (11%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
V + D +S+S DKT++LW+ + SD +S + + +I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
D+ +KVW + L GH +++ V V P D S G D W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
N + + HN I L SP+ + I+ + ++L+ + K S
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
+V S+AFS NR ++++ IK + L+ + +V++LRP+ S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIK-----------VFSLDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
A P +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S E L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + K
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GHSH + D L++DG YALS SWDKTLRLWD+A G+T +RF H DV+SV I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
+S SRDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+MVK
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
WNL +++ + GH +NT+T SPDG+L AS GKD MLW+L K ++TL D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
+L FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
+ + + D I++W +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
V + D +S+S DKT++LW+ + SD +S + + +I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
D+ +KVW + L GH +++ V V P D S G D W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
N + + HN I L SP+ + I+ + ++L+ + K S
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
+V S+AFS NR ++++ IK+++ L+ + +V++LRP+ S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
A P +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 194/316 (61%), Gaps = 11/316 (3%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S E L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + K
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GHSH + D L++DG YALS SWDKTLRLWD+A G+T +RF H DV+SV I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
+S SRDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+MVK
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
WNL +++ + GH +NT+T SPDG+L AS GKD MLW+L K ++TL D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
+L FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWN 310
+ + + D I++W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 37/331 (11%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
V + D +S+S DKT++LW+ + SD +S + + +I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
D+ +KVW + L GH +++ V V P D S G D W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
N + + HN I L SP+ + I+ + ++L+ + K S
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
+V S+AFS NR ++++ IK + L+ + +V++LRP+ S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIK-----------VFSLDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372
A P +SLAWS DGQTLFAGY+DN IRVWQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 139/314 (44%), Positives = 193/314 (61%), Gaps = 11/314 (3%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + KGHSH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
+ D L++DG YALS SWDKTLRLWD+A G+T +RF H DV+SV I+S S
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKVWNLT 181
RDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+MVK WNL
Sbjct: 121 RDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241
+++ + GH +NT+T SPDG+L AS GKD MLW+L K ++TL D + +L
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Query: 242 FSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDNRQIV 298
FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D + +
Sbjct: 239 FSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 299 SSSRDKTIKLWNTL 312
+ D I++W +
Sbjct: 297 AGYTDNVIRVWQVM 310
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
V + D +S+S DKT++LW+ + SD +S + + +I+S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 118
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
D+ +KVW + L GH +++ V V P D S G D W+L
Sbjct: 119 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
N + + HN I L SP+ + I+ + ++L+ + K S
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 230
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
+V S+AFS NR ++++ IK+++ L+ + +V++LRP+ S K
Sbjct: 231 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYS-K 277
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
A P +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 190/316 (60%), Gaps = 11/316 (3%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S E L LRGTL GHNGWVT +AT+ P+ +LS SRD TLI WKLT DD +GVP + K
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GHSH + D L++DG YALS SWDKTLRLWD+A G+T +RF H DV SV I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
+S SRDKTIK+W C T++ GH+DWVS VR PN + + I+SAG D+ VK
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
WNL +++ + GH +NT+T SPDG+L AS GKD LW+L K +TL D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
+L FSPNR + + + ++ +L Y ++ + E +S + +S+A+S D
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWN 310
+ + + D I++W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 156/335 (46%), Gaps = 43/335 (12%)
Query: 55 VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
V + L+GH+ +++ + S+ N LS S DKTL W L G R F+ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLA---HCKFTIVEDGHSDWVSCVRFSPNHQNPI 165
V + D +S+S DKT++LW+ + +F GH V V + +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVXSVDI--DKKASX 121
Query: 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAML 219
I+S D+ +KVW + L GH +++ V V P D S G D
Sbjct: 122 IISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 220 WDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF 278
W+LN + + HN I L SP+ + I+ + + L+ + K
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIXLWNL-AAKKAXYT 233
Query: 279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ 338
S +V S+AFS NR ++++ IK+++ L+ + +V++LRP+
Sbjct: 234 LSAQDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGY 281
Query: 339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
S KA P +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 282 S-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 234 bits (597), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 200/386 (51%), Gaps = 74/386 (19%)
Query: 9 RGTLNGHNGWVTQIAT------NPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRL 60
RG L GH+ WVT I N P ++S SRD T++IWKL ++ N +G+P K L
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
GH+HF+SD+ LS + +A+S SWDKTLRLWDL G T +RF H +V SVAFS DNRQ
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQN--------PIIVSAGW 171
I+S+ ++ IKLWN L CKF+ E + HSDWVSCVR+SP ++ P S GW
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
D +KVWN TN +++ H +N +++SP+G A+GGKD ++WD
Sbjct: 193 DGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD---------- 241
Query: 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS 291
I L + P R F D T+ + +AF+
Sbjct: 242 -----ILNLTY-PQREF-----DAGSTINQ--------------------------IAFN 264
Query: 292 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351
Q V+ D+ +K++N + K + +E + P ++ K P C SLA
Sbjct: 265 -PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE-------PITKAEGQKGKNPQCTSLA 316
Query: 352 WSTDGQTLFAGYSDNTIRVWQVSVTS 377
W+ G+ LFAG++D IR + ++
Sbjct: 317 WNALGKKLFAGFTDGVIRTFSFETSA 342
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 60/241 (24%)
Query: 146 DGHSDWVSCV--RFS--PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV 201
+GHSDWV+ + FS N +P+++S D+ V +W K+ GY
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW-------KLYEEEQNGYFGI--- 67
Query: 202 SPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQK 261
P +L HN ++ L S F IS + K
Sbjct: 68 -PHKALTG-----------------------HNHFVSDLALSQENCFA-----ISSSWDK 98
Query: 262 SNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD 321
+ L L+ + G F +V SVAFS DNRQI+S+ ++ IKLWN L CKF+ +
Sbjct: 99 T-LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 322 LETKK-MVEELR-PDVVSQSTKADP--PMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS 377
E V +R ++ + K P P S+ W D ++VW +
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW------------DGRLKVWNTNFQI 205
Query: 378 R 378
R
Sbjct: 206 R 206
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 176/386 (45%), Gaps = 42/386 (10%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
QL TL GH+ V +A +P TI S S D T+ +W G + L GHS
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN------RNGQLLQTLTGHSSS 264
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
++ + DG S S DKT++LW+ G+ + H+ V VAFS D + I S+S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
DKT+KLWN T+ GHS V V FSP+ Q I SA D+ VK+WN N +L
Sbjct: 324 DKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLL 378
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN 245
+GH+ + V SPDG AS D LW+ N G+ L TL H+ + + FSP+
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD 437
Query: 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT 305
I+ + L+ N G++ V VAFS D + I S+S DKT
Sbjct: 438 DQT------IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD--------------------PP 345
+KLWN T+ + PD + ++ +D
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Query: 346 MCLSLAWSTDGQTLFAGYSDNTIRVW 371
+A+S DGQT+ + SD T+++W
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 149/305 (48%), Gaps = 22/305 (7%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
QL TL GH+ V +A +P TI S S D T+ +W G + L GHS
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN------RNGQHLQTLTGHSSS 346
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + S DG S S DKT++LW+ G+ + H+ V VAFS D + I S+S
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
DKT+KLWN T+ GHS V V FSP+ Q I SA D+ VK+WN N +L
Sbjct: 406 DKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQ--TIASASDDKTVKLWNR-NGQLL 460
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN 245
+GH+ + V SPDG AS D LW+ N G+ L TL H+ + + FSP+
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD 519
Query: 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT 305
I+ + L+ N G++ V VAFS D + I S+S DKT
Sbjct: 520 GQT------IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572
Query: 306 IKLWN 310
+KLWN
Sbjct: 573 VKLWN 577
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 171/384 (44%), Gaps = 42/384 (10%)
Query: 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
R L H+ V +A +P TI S S D T+ +W G + L GHS +
Sbjct: 9 RNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVW 61
Query: 69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
+ S DG S S DKT++LW+ G+ + H+ V VAFS D + I S+S DK
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 129 TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN 188
T+KLWN T+ GHS V V FSP+ Q I SA D+ VK+WN N +L
Sbjct: 121 TVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQT 175
Query: 189 HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRS 247
+GH+ + V SPDG AS D LW+ N G+ L TL H+ + + FSP+
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 248 FQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK 307
I+ + L+ N G++ V VAF D + I S+S DKT+K
Sbjct: 235 T------IASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD--------------------PPMC 347
LWN T+ + PD + ++ +D
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSV 347
Query: 348 LSLAWSTDGQTLFAGYSDNTIRVW 371
+A+S DGQT+ + D T+++W
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLW 371
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 127/276 (46%), Gaps = 35/276 (12%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
K R E H+ V VAFS D + I S+S DKT+KLWN T+ GHS V V
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVA 64
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN 216
FSP+ Q I SA D+ VK+WN N +L +GH+ + V SPDG AS D
Sbjct: 65 FSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 217 AMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME 275
LW+ N G+ L TL H+ + + FSP+ I+ + L+ N G++
Sbjct: 122 VKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQT------IASASDDKTVKLWNRN-GQLL 173
Query: 276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV 335
V VAFS D + I S+S DKT+KLWN R
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---------------------RNGQ 212
Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW 371
+ Q+ +A+S DGQT+ + D T+++W
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 139/322 (43%), Gaps = 38/322 (11%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
L+GH VT++ +P F ++S S D T+ +W D G ++ LKGH+ + DI
Sbjct: 103 ALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDI 156
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
G S S D T++LWD + R H +V SV+ + IVS+SRDKTI
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 131 KLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
K+W +C T GH +WV VR PN +I S D+ V+VW + + K
Sbjct: 217 KMWEVQTGYCVKTFT--GHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 190 SGHTGYLNTVTVSPD--------------------GSLCASGGKDMNAMLWDLNDGKHLH 229
H + ++ +P+ G SG +D +WD++ G L
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 230 TLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV 288
TLV H++ + + F F I L ++ + + + V S+
Sbjct: 333 TLVGHDNWVRGVLFHSGGKF------ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 289 AFSVDNRQIVSSSRDKTIKLWN 310
F +V+ S D+T+K+W
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVWE 408
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 19/234 (8%)
Query: 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS 206
GH V+ V F P ++VSA D +KVW+ + GHT + ++ G
Sbjct: 106 GHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 207 LCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI 265
L AS DM LWD + + T+ H+ ++++ PN I + +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH------IVSASRDKTIK 217
Query: 266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVD--- 321
++ + G F V V + D I S S D+T+++W CK + +
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 322 -LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
+E E +S++T ++ G L +G D TI++W VS
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKS-----GKPGPFLLSGSRDKTIKMWDVS 326
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 37 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 264
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 265 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 323 NDKTIKLWKS 332
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 78 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 131
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 248
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 242 FSPNRSF 248
P +
Sbjct: 309 CHPTENI 315
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 156
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 213
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 214 ----NPPVSF---------------------------------------VKFSPNGKYIL 230
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 271
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 272 KWIVSGSEDNLVYIWNL 288
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 38 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 148
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 149 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 208 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 244
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 32 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 85
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 146 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 259
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 260 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 318 NDKTIKLWKS 327
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 73 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 126
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 187 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 243
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 242 FSPNRSF 248
P +
Sbjct: 304 CHPTENI 310
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 151
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 208
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 209 ----NPPVSF---------------------------------------VKFSPNGKYIL 225
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 226 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 266
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 267 KWIVSGSEDNLVYIWNL 283
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 33 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 143
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 144 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 203 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 239
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 20 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 73
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 134 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 247
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 248 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 306 NDKTIKLWKS 315
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 61 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 114
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 175 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 231
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 242 FSPNRSF 248
P +
Sbjct: 292 CHPTENI 298
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 139
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 196
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 197 ----NPPVSF---------------------------------------VKFSPNGKYIL 213
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 254
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 255 KWIVSGSEDNLVYIWNL 271
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 21 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 131
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 132 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 191 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 227
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 39 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 92
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 153 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 266
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 267 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 325 NDKTIKLWKS 334
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 80 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 133
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 194 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 250
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 242 FSPNRSF 248
P +
Sbjct: 311 CHPTENI 317
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 158
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 215
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 216 ----NPPVSF---------------------------------------VKFSPNGKYIL 232
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 273
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 274 KWIVSGSEDNLVYIWNL 290
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 40 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 150
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 151 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 210 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 246
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 62 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 115
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 232
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 242 FSPNRSF 248
P +
Sbjct: 293 CHPTENI 299
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 140
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 197
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 198 ----NPPVSF---------------------------------------VKFSPNGKYIL 214
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 255
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 256 KWIVSGSEDNLVYIWNL 272
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 22 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 11 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 64
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 125 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 238
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 239 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 297 NDKTIKLWKS 306
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 52 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 105
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 222
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 242 FSPNRSF 248
P +
Sbjct: 283 CHPTENI 289
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 130
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 187
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 188 ----NPPVSF---------------------------------------VKFSPNGKYIL 204
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 205 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 245
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 246 KWIVSGSEDNLVYIWNL 262
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 12 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 122
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 123 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 182 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 218
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 62 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 115
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 232
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 242 FSPNRSF 248
P +
Sbjct: 293 CHPTENI 299
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 140
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 197
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 198 ----NPPVSF---------------------------------------VKFSPNGKYIL 214
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 255
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 256 KWIVSGSEDNLVYIWNL 272
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 22 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 62 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 115
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 232
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 242 FSPNRSF 248
P +
Sbjct: 293 CHPTENI 299
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 73/332 (21%)
Query: 45 KLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED 104
K T NY + + L GH+ +S + S +G + S S DK +++W GK +
Sbjct: 11 KPTPVKPNYAL-KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163
H + VA+S D+ +VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QS 125
Query: 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN 223
+IVS +D V++W++ K H+ ++ V + DGSL S D +WD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR 283
G+ L TL+ +D +P SF
Sbjct: 186 SGQCLKTLIDDD-------NPPVSF----------------------------------- 203
Query: 284 DVLSVAFSVDNRQIVSSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKA 342
V FS + + I++++ D T+KLW+ + C T + +K
Sbjct: 204 ----VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--------------- 244
Query: 343 DPPMCLSLAWS-TDGQTLFAGYSDNTIRVWQV 373
C+ +S T G+ + +G DN + +W +
Sbjct: 245 ----CIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 22 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 16 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 69
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 130 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 243
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 244 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 302 NDKTIKLWKS 311
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 57 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 110
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 171 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 227
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 242 FSPNRSF 248
P +
Sbjct: 288 CHPTENI 294
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 135
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 192
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 193 ----NPPVSF---------------------------------------VKFSPNGKYIL 209
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 250
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 251 KWIVSGSEDNLVYIWNL 267
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 17 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 127
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 128 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 187 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 223
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 68
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 242
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 243 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 301 NDKTIKLWKS 310
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 56 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 109
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 226
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 242 FSPNRSF 248
P +
Sbjct: 287 CHPTENI 293
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 134
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 191
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 192 ----NPPVSF---------------------------------------VKFSPNGKYIL 208
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 249
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 250 KWIVSGSEDNLVYIWNL 266
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 16 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 126
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 127 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 186 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 222
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 14 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 67
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 128 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 241
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 242 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 300 NDKTIKLWKS 309
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 55 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 108
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 169 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 225
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 242 FSPNRSF 248
P +
Sbjct: 286 CHPTENI 292
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 133
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 190
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 191 ----NPPVSF---------------------------------------VKFSPNGKYIL 207
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 208 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 248
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 249 KWIVSGSEDNLVYIWNL 265
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 15 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 125
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 126 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 185 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 221
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 68
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 242
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 243 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 301 NDKTIKLWKS 310
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 56 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 109
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 226
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 242 FSPNRSF 248
P +
Sbjct: 287 CHPTENI 293
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 134
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 191
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 192 ----NPPVSF---------------------------------------VKFSPNGKYIL 208
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 249
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 250 KWIVSGSEDNLVYIWNL 266
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 16 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 126
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 127 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 186 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 222
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 18/309 (5%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D + LWD + GK L T H + C
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--R 302
N S K +S + + + + ++ + ++ V+S A I S++
Sbjct: 246 NFSVTGGKWIVSGS-EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 303 DKTIKLWNT 311
DKTIKLW +
Sbjct: 305 DKTIKLWKS 313
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 59 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ G + H+ V +V F+ D IVSSS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNDLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNRSF 248
P +
Sbjct: 290 CHPTENI 296
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D +KLW+ + C T + +K C+ +S T G
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 253 KWIVSGSEDNMVYIWNL 269
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Query: 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
FT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 20 FTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTL 259
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSF 130
Query: 260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFT 318
+S + ++ + G + V +V F+ D IVSSS D ++W+T + C T
Sbjct: 131 DES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
++D + +PP+ + +S +G+ + A DN +++W S
Sbjct: 190 LIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNDLKLWDYS 225
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + + S D + IW G +K + GH I
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLAASSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 132 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
N S K +S + + NL+ ++ + ++ V+S A I S++
Sbjct: 246 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 302 RDKTIKLWNT 311
DKTIKLW +
Sbjct: 304 NDKTIKLWKS 313
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 59 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNRSF 248
P +
Sbjct: 290 CHPTENI 296
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + + S DK +++W GK + H + VA+S D+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + SA D+++K+W + K + SGH ++ V
Sbjct: 19 KFTLA--GHTKAVSSVKFSPNGEWLAASSA--DKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 59 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNR 246
P
Sbjct: 290 CHPTE 294
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 132 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230
K ++ V SP+G + D LWD + GK L T
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 19 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS---SDGN 77
+ + N K+ IL+ + DNTL +W D + G K GH + I + + G
Sbjct: 202 KFSPNGKY---ILAATLDNTLKLW-----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLWNT 135
+ +SGS D + +W+L + ++ + HT V+S A I S++ DKTIKL+ +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 59 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ GK + H+ V +V F+ D IVSSS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNR 246
P
Sbjct: 290 CHPTE 294
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ K H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L+ TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 132 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230
K ++ V SP+G + D LWD + GK L T
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
KFT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 19 KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
+S + ++ + GK + V +V F+ D IVSSS D ++W+T + C
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
T++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS---SDGN 77
+ + N K+ IL+ + DNTL +W D + G K GH + I + + G
Sbjct: 202 KFSPNGKY---ILAATLDNTLKLW-----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLWNT 135
+ +SGS D + +W+L + ++ + HT V+S A I S++ DKTIKL+ +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 18/309 (5%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L TL GH V+ + +P + + S S D + IW G +K + GH I
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
SD+ SSD N +S S DKTL++WD+++GK + + H+ V F+ + IVS S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
+++++W+ C T+ HSD VS V F N +IVS+ +D + ++W+ + + L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
K ++ V SP+G + D LWD + GK L T H + C
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--R 302
N S K +S + + + + ++ + ++ V+S A I S++
Sbjct: 246 NFSVTGGKWIVSGS-EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 303 DKTIKLWNT 311
DKTIKLW +
Sbjct: 305 DKTIKLWKS 313
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 14/247 (5%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
+ T++GH ++ +A + + ++S S D TL IW D + G K LKGHS++
Sbjct: 59 KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N +SGS+D+++R+WD+ G + H+ V +V F+ D IVSSS
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D ++W+T + C T+++D + VS V+FSPN + I++A D +K+W+ + K
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
++GH + + G SG +D +W+L + + L H D++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNRSF 248
P +
Sbjct: 290 CHPTENI 296
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 72/317 (22%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L GH+ +S + S +G + S S DK +++W GK + H + VA+S D+
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+VS+S DKT+K+W+ + C T+ GHS++V C F+P Q+ +IVS +D V++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
++ H+ ++ V + DGSL S D +WD G+ L TL+ +D
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
+P SF V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
+++ D T+KLW+ + C T + +K C+ +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
+ + +G DN + +W +
Sbjct: 253 KWIVSGSEDNMVYIWNL 269
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 32/236 (13%)
Query: 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
FT+ GH+ VS V+FSPN + + S+ D+++K+W + K + SGH ++ V
Sbjct: 20 FTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTL 259
S D +L S D +WD++ GK L TL H++ + F+P + L +S +
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSF 130
Query: 260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFT 318
+S + ++ + G + V +V F+ D IVSSS D ++W+T + C T
Sbjct: 131 DES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
++D + +PP+ + +S +G+ + A DNT+++W S
Sbjct: 190 LIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 134/329 (40%), Gaps = 45/329 (13%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
++ H+ + S DG S DKTL+++ G+ + H +VL AFS D+R
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
I + S DK +K+WN++ + D HS+ V+C F+ + + ++ + D +K+W+
Sbjct: 677 FIATCSVDKKVKIWNSMTG-ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
L + + GHT +N SPD L AS D LWD ++
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 240 LCFSPNRSFQKI------KLDISRTL--QKSNLILYPINH----GKMETPFFSLFRDVLS 287
L P + I D +R + K+ + L+ I+ G++ T S +
Sbjct: 796 L-EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQ---Y 851
Query: 288 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMC 347
FS N V + ++LWNT S+S AD
Sbjct: 852 CDFSPQNHLAVVALSQYCVELWNT------------------------DSRSKVADCRGH 887
Query: 348 LS----LAWSTDGQTLFAGYSDNTIRVWQ 372
LS + +S DG + D TIR+W+
Sbjct: 888 LSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 21/203 (10%)
Query: 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN 77
W Q + K T++S S D + +W D + L+GH + D L +
Sbjct: 1013 WHIQFTADEK---TLISSSDDAEIQVWNWQLDKCIF------LRGHQETVKDFRLLKNSR 1063
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137
LS S+D T+++W++ G + F H VLS S D + S+S DKT K+W+
Sbjct: 1064 L-LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Query: 138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-----KINHSG- 191
+ GH+ V C FS + + ++ + + +++WN++N +L ++ G
Sbjct: 1123 LLPLHELR-GHNGCVRCSAFSVD--STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGA 1179
Query: 192 --HTGYLNTVTVSPDGSLCASGG 212
H G++ + SPDG + S G
Sbjct: 1180 ATHGGWVTDLCFSPDGKMLISAG 1202
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 151/385 (39%), Gaps = 79/385 (20%)
Query: 36 SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95
S D L +W L + + + + GH++ ++ S D S S D TL+LWD +
Sbjct: 726 SSDCFLKLWDLNQKEC-----RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 96 GKTTR---------RFEDHTKD----VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
+ ED +D V ++S D +I+ ++++K I L++
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLG 839
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTV 201
+ GH + FSP QN + V A V++WN T+ + K+ + GH +++ V
Sbjct: 840 EIHTGHHSTIQYCDFSP--QNHLAVVALSQYCVELWN-TDSRSKVADCRGHLSWVHGVMF 896
Query: 202 SPDGSLCASGGKDMNAMLWDLND---------GKHLHTLVHNDIITALCFSPNRSFQKI- 251
SPDGS + D LW+ + + + + + L R Q I
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 252 ----KLDISRTLQKSNLILYPI--------NHGKMET-------PFFSLF---RDVLSVA 289
++D Q S L P +G +E F S F + V +
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 290 FSVDNRQIVSSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL 348
F+ D + ++SSS D I++WN L C F ET K L+ +
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRL------------ 1064
Query: 349 SLAWSTDGQTLFAGYSDNTIRVWQV 373
L+WS DG T++VW +
Sbjct: 1065 -LSWSFDG----------TVKVWNI 1078
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+S LS Y G + + + +L + + H K V + F+ D + ++SSS
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 127 DKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
D I++WN L C F GH + V R N + ++S +D VKVWN+
Sbjct: 1030 DAEIQVWNWQLDKCIFL---RGHQETVKDFRLLKNSR---LLSWSFDGTVKVWNIITGNK 1083
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFS 243
+ + H G + + +S D + +S D A +W + LH L HN + FS
Sbjct: 1084 EKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS 1142
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 132/290 (45%), Gaps = 31/290 (10%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
I+S RDNT+ IW D N ++ L GH+ + + L D ++GS D T+R+W
Sbjct: 146 IVSGLRDNTIKIW-----DKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVW 198
Query: 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI--VEDGHS 149
D+ G+ H + VL + F +N +V+ S+D++I +W+ + T+ V GH
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256
Query: 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA 209
V+ V F + IVSA DR +KVWN + C+ +GH + + L
Sbjct: 257 AAVNVVDFDDKY----IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 310
Query: 210 SGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQ-----KIKL-DISRTLQKS 262
SG D LWD+ G L L H +++ + F R KIK+ D+ L
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 263 NLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312
P + T R V + F D QIVSSS D TI +W+ L
Sbjct: 371 A----PAGTLCLRTLVEHSGR-VFRLQF--DEFQIVSSSHDDTILIWDFL 413
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
S + LR L GH V + + K+ I+S S D T+ +W +T+ + L
Sbjct: 242 SPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVW-----NTSTCEFVRTLN 293
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GH I+ L +SGS D T+RLWD+ G R E H + V + F DN++I
Sbjct: 294 GHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRI 349
Query: 122 VSSSRDKTIKLWNTLAH----------CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
VS + D IK+W+ +A C T+VE HS V ++F IVS+
Sbjct: 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQFDEFQ----IVSSSH 403
Query: 172 DRMVKVWNLTN 182
D + +W+ N
Sbjct: 404 DDTILIWDFLN 414
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 106/271 (39%), Gaps = 93/271 (34%)
Query: 113 AFSVDNRQIVSSSRDKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG 170
D+++IVS RD TIK+W NTL CK + GH+ V C+++ +I++
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILT--GHTGSVLCLQYDER----VIITGS 190
Query: 171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230
D V+V WD+N G+ L+T
Sbjct: 191 SDSTVRV------------------------------------------WDVNTGEMLNT 208
Query: 231 LVHN-DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL--- 286
L+H+ + + L F+ N D S I M +P R VL
Sbjct: 209 LIHHCEAVLHLRFN-NGMMVTCSKDRS------------IAVWDMASPTDITLRRVLVGH 255
Query: 287 SVAFSV---DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD 343
A +V D++ IVS+S D+TIK+WNT + C+F K+ +
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNT-STCEFVRTLNGHKRGI--------------- 299
Query: 344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
CL + + +G SDNTIR+W +
Sbjct: 300 --ACLQYR----DRLVVSGSSDNTIRLWDIE 324
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
++ H+ + S DG S DKTL+++ G+ + H +VL AFS D+
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
I + S DK +K+W++ A K D HS+ V+C F+ + ++ + D +K+W+
Sbjct: 671 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222
L + + GHT +N SPD L AS D LWD+
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 62/225 (27%)
Query: 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90
T++S S D+ + +W D + L+ H + D L D LS S+D T+++
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVF------LQAHQETVKDFRLLQDSRL-LSWSFDGTVKV 1069
Query: 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD 150
W++ G+ R F H VLS A S D + S+S DKT K+W+ F ++
Sbjct: 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS------FDLL------ 1117
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS 210
SP H+ LK GH G + S DG L A+
Sbjct: 1118 -------SPLHE----------------------LK----GHNGCVRCSAFSLDGILLAT 1144
Query: 211 GGKDMNAMLWDLNDGKHLH----------TLVHNDIITALCFSPN 245
G + +W+++DG+ LH T H +T +CFSP+
Sbjct: 1145 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1189
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 55/321 (17%)
Query: 36 SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95
S D L +W L + + + + GH++ ++ S D S S D TLRLWD+ +
Sbjct: 720 SNDFFLKLWDLNQKEC-----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 96 GKT-----TRRF----EDHTKDVLSV----AFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
+RF ED +DV + ++S D +I+ ++++K + L++
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA 833
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTV 201
+ GH + FSP +I + + V++WN+ + +LK+ + GH +++ V
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNI-DSRLKVADCRGHLSWVHGVMF 890
Query: 202 SPDGSLCASGGKDMNAMLWDLND---------GKHLHTLVHNDIITALCFSPNRSFQKI- 251
SPDGS + D +W+ + + + + L R Q I
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 252 ----KLDISRTLQKSNLILYP----INHGK-------METPFFSLF-------RDVLSVA 289
++D Q S L P + G +E P +F + V +
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010
Query: 290 FSVDNRQIVSSSRDKTIKLWN 310
F+ D + ++SSS D I++WN
Sbjct: 1011 FTADGKTLISSSEDSVIQVWN 1031
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 126/328 (38%), Gaps = 63/328 (19%)
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
+GH ++ ++ S DG+ L+ S D+T+R+W+ K + K + V F +
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETM 936
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-----VSCVRFSPNHQNPIIVSAGWDRMV 175
+++ + ++L + G D+ VSC SP+ + + D +
Sbjct: 937 VLAVDNIRGLQL---------IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAI 985
Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
K+ L N ++ + GH + + + DG S +D +W+ G ++ H +
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045
Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLI---------LYPINHGKMETPFFSLFRDVL 286
+ R LQ S L+ ++ + G++E F VL
Sbjct: 1046 TVKDF----------------RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089
Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
S A S D + S+S DKT K+W+ DL L P K
Sbjct: 1090 SCAISSDATKFSSTSADKTAKIWS---------FDL--------LSP---LHELKGHNGC 1129
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
A+S DG L G + IR+W VS
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 12/221 (5%)
Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL 207
H+D V FS + Q I S G D+ ++V+ + ++ H + S D S
Sbjct: 614 HTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 208 CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267
A+ D +WD GK +HT + C N+S L ++ L L+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH---LLLATGSNDFFLKLW 728
Query: 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM 327
+N + F V FS D+ + S S D T++LW+ + + ++++ +
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI 368
E P+ V K C S WS DG + + +
Sbjct: 789 SSEDPPEDVEVIVK-----CCS--WSADGDKIIVAAKNKVL 822
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
++ H+ + S DG S DKTL+++ G+ + H +VL AFS D+
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
I + S DK +K+W++ A K D HS+ V+C F+ + ++ + D +K+W+
Sbjct: 678 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222
L + + GHT +N SPD L AS D LWD+
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 62/225 (27%)
Query: 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90
T++S S D+ + +W D + L+ H + D L D LS S+D T+++
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVF------LQAHQETVKDFRLLQDSRL-LSWSFDGTVKV 1076
Query: 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD 150
W++ G+ R F H VLS A S D + S+S DKT K+W+ F ++
Sbjct: 1077 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS------FDLL------ 1124
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS 210
SP H+ LK GH G + S DG L A+
Sbjct: 1125 -------SPLHE----------------------LK----GHNGCVRCSAFSLDGILLAT 1151
Query: 211 GGKDMNAMLWDLNDGKHLH----------TLVHNDIITALCFSPN 245
G + +W+++DG+ LH T H +T +CFSP+
Sbjct: 1152 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1196
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 55/321 (17%)
Query: 36 SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95
S D L +W L + + + + GH++ ++ S D S S D TLRLWD+ +
Sbjct: 727 SNDFFLKLWDLNQKEC-----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 96 GKT-----TRRF----EDHTKDVLSV----AFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
+RF ED +DV + ++S D +I+ ++++K + L++
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA 840
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTV 201
+ GH + FSP +I + + V++WN+ + +LK+ + GH +++ V
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNI-DSRLKVADCRGHLSWVHGVMF 897
Query: 202 SPDGSLCASGGKDMNAMLWDLND---------GKHLHTLVHNDIITALCFSPNRSFQKI- 251
SPDGS + D +W+ + + + + L R Q I
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 252 ----KLDISRTLQKSNLILYP----INHGK-------METPFFSLF-------RDVLSVA 289
++D Q S L P + G +E P +F + V +
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1017
Query: 290 FSVDNRQIVSSSRDKTIKLWN 310
F+ D + ++SSS D I++WN
Sbjct: 1018 FTADGKTLISSSEDSVIQVWN 1038
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 126/328 (38%), Gaps = 63/328 (19%)
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
+GH ++ ++ S DG+ L+ S D+T+R+W+ K + K + V F +
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETM 943
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-----VSCVRFSPNHQNPIIVSAGWDRMV 175
+++ + ++L + G D+ VSC SP+ + + D +
Sbjct: 944 VLAVDNIRGLQL---------IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAI 992
Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
K+ L N ++ + GH + + + DG S +D +W+ G ++ H +
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1052
Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLI---------LYPINHGKMETPFFSLFRDVL 286
+ R LQ S L+ ++ + G++E F VL
Sbjct: 1053 TVKDF----------------RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1096
Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
S A S D + S+S DKT K+W+ DL L P K
Sbjct: 1097 SCAISSDATKFSSTSADKTAKIWS---------FDL--------LSP---LHELKGHNGC 1136
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
A+S DG L G + IR+W VS
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 12/221 (5%)
Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL 207
H+D V FS + Q I S G D+ ++V+ + ++ H + S D S
Sbjct: 621 HTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 208 CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267
A+ D +WD GK +HT + C N+S L ++ L L+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH---LLLATGSNDFFLKLW 735
Query: 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM 327
+N + F V FS D+ + S S D T++LW+ + + ++++ +
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI 368
E P+ V K C S WS DG + + +
Sbjct: 796 SSEDPPEDVEVIVK-----CCS--WSADGDKIIVAAKNKVL 829
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
+I + S DG + +G+ D+ +R+WD+ K + H +D+ S+ + ++VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 126 RDKTIKLWN-TLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
D+T+++W+ C T+ +EDG V+ V SP I + DR V+VW+
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDG----VTTVAVSPG-DGKYIAAGSLDRAVRVWDSETG 239
Query: 184 KL-------KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI 236
L + +GH + +V + DG SG D + LW+L +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---------- 289
Query: 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
N+S K N G E + VLSVA + ++
Sbjct: 290 --------NKSDSKTP-----------------NSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 297 IVSSSRDKTIKLWN 310
I+S S+D+ + W+
Sbjct: 325 ILSGSKDRGVLFWD 338
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT--TRRFEDHTKDVLSVAFSV- 116
L+GH I + G+ +SGS D+T+R+WDL G+ T ED V +VA S
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPG 217
Query: 117 DNRQIVSSSRDKTIKLWNTLAHCKFTIVED------GHSDWVSCVRFSPNHQNPIIVSAG 170
D + I + S D+ +++W++ ++ GH D V V F+ + Q+ +VS
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVSGS 275
Query: 171 WDRMVKVWNLTNCKLK------------INHSGHTGYLNTVTVSPDGSLCASGGKDMNAM 218
DR VK+WNL N K + + GH ++ +V + + SG KD +
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 219 LWDLNDGKHLHTL 231
WD G L L
Sbjct: 336 FWDKKSGNPLLML 348
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 30/250 (12%)
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
H+ + + S+DG Y +G +KT +++ ++ G R D
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSD------------------ 103
Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
S+ +K + NT + + ++ V FSP+ + + + DR++++W++ N
Sbjct: 104 DSAANKDPENLNTSSSPSSDL-------YIRSVCFSPDGK--FLATGAEDRLIRIWDIEN 154
Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
K+ + GH + ++ P G SG D +WDL G+ TL D +T +
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214
Query: 243 SPNRSFQKIKLDISRTLQK-SNLILYPINHGKMETPFFSLFRD-VLSVAFSVDNRQIVSS 300
SP + R ++ + + + E + +D V SV F+ D + +VS
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 301 SRDKTIKLWN 310
S D+++KLWN
Sbjct: 275 SLDRSVKLWN 284
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--- 61
T Q TL+ +G VT +A +P I + S D + +W D+ G +RL
Sbjct: 196 TGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVW-----DSETGFLVERLDSEN 249
Query: 62 ----GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA------------AGKTTRRFEDH 105
GH + +V + DG +SGS D++++LW+L +G + H
Sbjct: 250 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 106 TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV 155
VLSVA + ++ I+S S+D+ + W+ + +++ GH + V V
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISV 358
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 31 TILSCSRDNTLIIWKLTRDDT-------NYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83
+++S S D ++ +W L + N G + GH F+ + + + Y LSGS
Sbjct: 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Query: 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
D+ + WD +G + H V+SVA +
Sbjct: 330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6 LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
++ R TL GH + + T+ + +LS S+D LIIW + + +P +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRL---LLSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
S ++ + GNY G D +++L + +R HT LS +D+
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QIV+SS D T LW+ + + T GH+ V + +P+ + + VS D K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + +GH +N + P+G+ A+G D L+DL + L T H++II
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
C + SF K + N ++ V + + D + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
S D +K+WN
Sbjct: 330 GSWDSFLKIWN 340
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
+T R H + ++ + D+R ++S+S+D + +W++ K + S WV
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
++P+ + G D + ++NL N ++ +GHTGYL+ D + S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
D LWD+ G+ T H + +L +P+ R F D S L + +
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
G F D+ ++ F + + S D T +L+ +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
LR D + D +C S+++S G+ L AGY D VW R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6 LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
++ R TL GH + + T+ + +LS S+D LIIW + + +P +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRL---LLSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
S ++ + GNY G D +++L + +R HT LS +D+
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QIV+SS D T LW+ + + T GH+ V + +P+ + + VS D K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + +GH +N + P+G+ A+G D L+DL + L T H++II
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
C + SF K + N ++ V + + D + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
S D +K+WN
Sbjct: 330 GSWDSFLKIWN 340
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
+T R H + ++ + D+R ++S+S+D + +W++ K + S WV
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
++P+ + G D + ++NL N ++ +GHTGYL+ D + S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
D LWD+ G+ T H + +L +P+ R F D S L + +
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
G F D+ ++ F + + S D T +L+ +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
LR D + D +C S+++S G+ L AGY D VW R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 40/307 (13%)
Query: 12 LNGHNGWVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
L GH+ + T +F + I+S S DNTL +W G + L GH+ +
Sbjct: 114 LKGHD---DHVITCLQFCGNRIVSGSDDNTLKVWSAV-----TGKCLRTLVGHTGGVWSS 165
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
+ N +SGS D+TL++W+ G+ HT V + +++VS SRD T+
Sbjct: 166 QMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATL 221
Query: 131 KLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
++W+ C ++ GH V CV++ +VS +D MVKVW+
Sbjct: 222 RVWDIETGQCLHVLM--GHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTL 275
Query: 190 SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN--- 245
GHT + ++ DG SG D + +WD+ G +HTL H + + + N
Sbjct: 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333
Query: 246 --RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303
+ +K+ +T Q + P H T + +++SS D
Sbjct: 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT------------CLQFNKNFVITSSDD 381
Query: 304 KTIKLWN 310
T+KLW+
Sbjct: 382 GTVKLWD 388
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 48 RDDTNYGVPQ----KRLKGHS-HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102
R DTN+ + K LKGH H I+ L GN +SGS D TL++W GK R
Sbjct: 98 RIDTNWRRGELKSPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155
Query: 103 EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNH 161
HT V S DN I+S S D+T+K+WN C T+ GH+ V C+
Sbjct: 156 VGHTGGVWSSQMR-DN-IIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHEKR 211
Query: 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
+VS D ++VW++ + GH + V DG SG D +WD
Sbjct: 212 ----VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 222 LNDGKHLHTLV-HNDIITALCF 242
LHTL H + + +L F
Sbjct: 266 PETETCLHTLQGHTNRVYSLQF 287
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 49/288 (17%)
Query: 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVEDGHS 149
W K+ + + H V++ NR IVS S D T+K+W+ + C T+V GH+
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLV--GHT 159
Query: 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA 209
V +S ++ II+S DR +KVWN + GHT + + +
Sbjct: 160 GGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 213
Query: 210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
SG +D +WD+ G+ LH L+ + C ++ D R + + + +
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLM-GHVAAVRC---------VQYDGRRVVSGAYDFMVKV 263
Query: 270 NHGKMETPFFSL---FRDVLSVAFSVDNRQIVSSSRDKTIKLWNT-LAHCKFTIVDLETK 325
+ ET +L V S+ F D +VS S D +I++W+ +C T+ ++
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
EL+ ++ L +G +D+T+++W +
Sbjct: 322 TSGMELKDNI-----------------------LVSGNADSTVKIWDI 346
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
ET TL GH V + + ++S S D ++ +W D G L GH
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVW-----DVETGNCIHTLTGH 318
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IV 122
S + L N +SG+ D T+++WD+ G+ + + K +V N+ ++
Sbjct: 319 QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 376
Query: 123 SSSRDKTIKLWN 134
+SS D T+KLW+
Sbjct: 377 TSSDDGTVKLWD 388
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 6 LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
++ R TL GH + + T+ + ++S S+D LIIW + + +P +
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 107
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
S ++ + GNY G D +++L + +R HT LS +D+
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 166
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QIV+SS D T LW+ + + T GH+ V + +P+ + + VS D K+W+
Sbjct: 167 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 223
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + +GH +N + P+G+ A+G D L+DL + L T H++II
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 283
Query: 240 L 240
+
Sbjct: 284 I 284
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
+T R H + ++ + D+R +VS+S+D + +W++ K + S WV
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 115
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
++P+ + G D + ++NL N ++ +GHTGYL+ D + S G
Sbjct: 116 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
D LWD+ G+ T H + +L +P+ R F D S L + +
Sbjct: 174 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 225
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
G F D+ ++ F + + S D T +L+ +
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 265
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
LR D + D +C S+++S G+ L AGY D VW R G
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 317
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN 77
WV A P + + DN I+ L + N V + L GH+ ++S D N
Sbjct: 110 WVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDD-N 166
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL- 136
++ S D T LWD+ G+ T F HT DV+S++ + D R VS + D + KLW+
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTG 194
C+ T GH ++ + F PN + D ++++L + + +H
Sbjct: 227 GMCRQTFT--GHESDINAICFFPN--GNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 282
Query: 195 YLNTVTVSPDGSLCASGGKDMNAMLWD 221
+ +V+ S G L +G D N +WD
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6 LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
++ R TL GH + + T+ + ++S S+D LIIW + + +P +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
S ++ + GNY G D +++L + +R HT LS +D+
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QIV+SS D T LW+ + + T GH+ V + +P+ + + VS D K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + +GH +N + P+G+ A+G D L+DL + L T H++II
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
C + SF K + N ++ V + + D + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
S D +K+WN
Sbjct: 330 GSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
+T R H + ++ + D+R +VS+S+D + +W++ K + S WV
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
++P+ + G D + ++NL N ++ +GHTGYL+ D + S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
D LWD+ G+ T H + +L +P+ R F D S L + +
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
G F D+ ++ F + + S D T +L+ +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
LR D + D +C S+++S G+ L AGY D VW R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6 LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
++ R TL GH + + T+ + ++S S+D LIIW + + +P +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
S ++ + GNY G D +++L + +R HT LS +D+
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QIV+SS D T LW+ + + T GH+ V + +P+ + + VS D K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + +GH +N + P+G+ A+G D L+DL + L T H++II
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
C + SF K + N ++ V + + D + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
S D +K+WN
Sbjct: 330 GSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
+T R H + ++ + D+R +VS+S+D + +W++ K + S WV
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
++P+ + G D + ++NL N ++ +GHTGYL+ D + S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
D LWD+ G+ T H + +L +P+ R F D S L + +
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
G F D+ ++ F + + S D T +L+ +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
LR D + D +C S+++S G+ L AGY D VW R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 11 TLNGHNGWVTQI-ATNPKFPDTILSCSRDNTLIIWKLTRDDTN------------YGVPQ 57
GHN V + K I++ SRDNTL +WKL ++ + + P+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 58 KR------LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
+ L+GH + + S GN +SGS+D TL +WD+A K HT + S
Sbjct: 258 ENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
+ + ++ +S+S D TI++W+ L + + GH+ V +R S + +VSA
Sbjct: 316 TIYDHERKRCISASXDTTIRIWD-LENGELXYTLQGHTALVGLLRLS----DKFLVSAAA 370
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
D ++ W+ + K ++ HT T ++ SG ++ +++L GK +H
Sbjct: 371 DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHAN 428
Query: 232 VHND 235
+ D
Sbjct: 429 ILKD 432
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
R TL GH T + T +F D + D+ I D N + L GH +
Sbjct: 114 RTTLRGH---XTSVITCLQFEDNYVITGADDKXI---RVYDSINKKFLLQ-LSGHDGGVW 166
Query: 69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV--LSVAFSVDNRQIVSSSR 126
+ + G +SGS D+T+R+WD+ G T FE H V L + + + IV+ SR
Sbjct: 167 ALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 127 DKTIKLWNTLAHCK----------------------FTIVEDGHSDWVSCVRFSPNHQNP 164
D T+ +W F V GH + VR H N
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHX---ASVRTVSGHGN- 281
Query: 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224
I+VS +D + VW++ K SGHT + + + C S D +WDL +
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 225 GKHLHTL 231
G+ +TL
Sbjct: 342 GELXYTL 348
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 11 TLNGHNGWVTQI-ATNPKFPDTILSCSRDNTLIIWKLTRDDTN------------YGVPQ 57
GHN V + K I++ SRDNTL +WKL ++ + + P+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 58 KR------LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
+ L+GH + + S GN +SGS+D TL +WD+A K HT + S
Sbjct: 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
+ + ++ +S+S D TI++W+ L + + GH+ V +R S + +VSA
Sbjct: 316 TIYDHERKRCISASMDTTIRIWD-LENGELMYTLQGHTALVGLLRLS----DKFLVSAAA 370
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
D ++ W+ + K ++ HT T ++ SG ++ +++L GK +H
Sbjct: 371 DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHAN 428
Query: 232 VHND 235
+ D
Sbjct: 429 ILKD 432
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 36/247 (14%)
Query: 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
R TL GH +T + T +F D + D+ +I D N + L GH +
Sbjct: 114 RTTLRGH---MTSVITCLQFEDNYVITGADDKMI---RVYDSINKKFLLQ-LSGHDGGVW 166
Query: 69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV--LSVAFSVDNRQIVSSSR 126
+ + G +SGS D+T+R+WD+ G T FE H V L + + + IV+ SR
Sbjct: 167 ALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 127 DKTIKLWNTLAHCK----------------------FTIVEDGHSDWVSCVRFSPNHQNP 164
D T+ +W F V GH ++ VR H N
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH---MASVRTVSGHGN- 281
Query: 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224
I+VS +D + VW++ K SGHT + + + C S D +WDL +
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 225 GKHLHTL 231
G+ ++TL
Sbjct: 342 GELMYTL 348
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L T GH +V +A NPK P T S D T+ +W L + N+ + + +G ++
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
D D Y ++ S D T+++WD E H +V F I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
T+K+WN+ + + G W C+ P + I S G+D V +L N +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGNDE-- 304
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246
T+++ P G L SGGK+ A +DI TA+ R
Sbjct: 305 ----------PTLSLDPVGKLVWSGGKNAAA----------------SDIFTAVI----R 334
Query: 247 SFQKIKLDISRTLQKSNL 264
++++ D +LQ L
Sbjct: 335 GNEEVEQDEPLSLQTKEL 352
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
N+ + GS D +R+++ G+ FE H + S+A ++S S D T+KLWN
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
+ +GH +V CV F+P ++P ++G DR VKVW+L N L
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
Y++ + PD + D+ +WD + TL
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
G M F++F L + I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 52 NYGVPQK--RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKD 108
NY +K + H +I I + Y LSGS D T++LW+ + FE H
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 109 VLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV 167
V+ VAF+ D S D+T+K+W+ + G V+ V + P P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
+A D +K+W+ GH ++ P + SG +D +W+ + K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 228 LHTL 231
TL
Sbjct: 263 EKTL 266
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
+ F + + V + F ++++ ++LWN + ++ + V +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
+N IIV + D ++V+N + ++ H Y+ ++ V P SG D+ L
Sbjct: 66 -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
W+ + L H + + F+P + RT++ +L TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
F+L R V V + D ++++S D TIK+W D +TK V L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
+ + S P + +G D T+++W S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L T GH +V +A NPK P T S D T+ +W L + N+ + + +G ++
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
D D Y ++ S D T+++WD E H +V F I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
T+K+WN+ + + G W C+ P + I S G+D V +L N +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGNDE-- 304
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246
T+++ P G L SGGK+ A +DI TA+ R
Sbjct: 305 ----------PTLSLDPVGKLVWSGGKNAAA----------------SDIFTAVI----R 334
Query: 247 SFQKIKLDISRTLQKSNL 264
++++ D +LQ L
Sbjct: 335 GNEEVEQDEPLSLQTKEL 352
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
N+ + GS D +R+++ G+ FE H + S+A ++S S D T+KLWN
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
+ +GH +V CV F+P ++P ++G DR VKVW+L N L
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
Y++ + PD + D+ +WD + TL
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
G M F++F L + I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 52 NYGVPQK--RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKD 108
NY +K + H +I I + Y LSGS D T++LW+ + FE H
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 109 VLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV 167
V+ VAF+ D S D+T+K+W+ + G V+ V + P P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
+A D +K+W+ GH ++ P + SG +D +W+ + K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 228 LHTL 231
TL
Sbjct: 263 EKTL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
+ F + + V + F ++++ +++WN + ++ + V +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
+N IIV + D ++V+N + ++ H Y+ ++ V P SG D+ L
Sbjct: 66 -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
W+ + L H + + F+P + RT++ +L TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
F+L R V V + D ++++S D TIK+W D +TK V L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
+ + S P + +G D T+++W S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 32/289 (11%)
Query: 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
KT R + H VL + + D R+IVSSS+D + +W++ K V WV
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACA 113
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCK------LKINHSGHTGYLNTVTVSPDGSLCAS 210
++P+ I G D V+ LT K K + + HT YL+ + + +
Sbjct: 114 YAPS--GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT 171
Query: 211 GGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
D LWD+ G+ L + H + L +P+ + +S K ++ + +
Sbjct: 172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF---VSGGCDKKAMV-WDM 227
Query: 270 NHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE 329
G+ F + DV SV + S S D T +L++ A + I E+
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES----- 282
Query: 330 ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR 378
++ ++ D +S G+ LFAGY+D TI VW V SR
Sbjct: 283 -----IIFGASSVD--------FSLSGRLLFAGYNDYTINVWDVLKGSR 318
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH--FISDIVLSSDGNYALSGSWDKTLR 89
IL+ S D T +W D G + GH D+ S GN +SG DK
Sbjct: 169 ILTASGDGTCALW-----DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS 149
+WD+ +G+ + FE H DV SV + S S D T +L++ A + I
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 150 DW-VSCVRFSPNHQNPIIVSAGW-DRMVKVWN-LTNCKLKINHSGHTGYLNTVTVSPDGS 206
+ S V FS + + ++ AG+ D + VW+ L ++ I GH ++T+ VSPDG+
Sbjct: 284 IFGASSVDFSLSGR---LLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGT 339
Query: 207 LCASGGKDMNAMLW 220
SG D +W
Sbjct: 340 AFCSGSWDHTLRVW 353
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 117/315 (37%), Gaps = 26/315 (8%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
++ R TL GH V + K I+S S+D +I+W + + V
Sbjct: 54 MKTRRTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-----CT 107
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT------RRFEDHTKDVLSVAFSVDNR 119
++ + G G D ++ L K + HT + + +F+ +
Sbjct: 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
QI+++S D T LW+ + + GH V C+ +P+ VS G D+ VW+
Sbjct: 168 QILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
+ + + H +N+V P G ASG D L+DL + + II
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPIN-----HGKMETPFFSLFRDVLSVAFSVDN 294
+ +S L + Y IN G + F V ++ S D
Sbjct: 287 A--------SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Query: 295 RQIVSSSRDKTIKLW 309
S S D T+++W
Sbjct: 339 TAFCSGSWDHTLRVW 353
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV 71
L GH G+ + P +++ S D T ++W +T + GH+ + +
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 72 LSS-DGNYALSGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
++S + N +SGS D T+RLWDL + R + H D+ SV F D ++ + S D T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 130 IKLWNTLAHCKFTIV------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRM-VKVWNLTN 182
+L++ + + D V+ V FS + + ++ AG+ VW+
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLL 329
Query: 183 CKLKIN----HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
++ +N + H G ++ + +S DGS +G D N +W
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 140/341 (41%), Gaps = 56/341 (16%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIW-KLTRDDTNYGVPQKRLKGHSHFISD 69
TL GH+G V + P+ + I+S S+D LI+W LT T+ +K H ++ +
Sbjct: 61 TLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTH------AIKLHCPWVME 113
Query: 70 IVLSSDGNYALSGSWDKTLRLWDLAAGK-------TTRRFEDHTKDVLSVAFSVDNR-QI 121
+ +G G D +++L++ +R H S + D ++
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 122 VSSSRDKTIKLWNTLAHCKFTIV----EDGHSDWVSCVRFSPNHQNP-IIVSAGWDRMVK 176
++ S D+T LW+ + +I GH+ V + S N N + +S D V+
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSINSLNANMFISGSCDTTVR 231
Query: 177 VWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN 234
+W+L T+ ++ H GH G +N+V PDG +G D L+D+ G L V+N
Sbjct: 232 LWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ--VYN 288
Query: 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYP------------------INHGKMET 276
P+R+ ++ + S S +L+ +N G ++
Sbjct: 289 R-------EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 277 PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 317
S + + S D + + S DK +K+W H K
Sbjct: 342 ---SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 46/339 (13%)
Query: 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD 117
+ L+GHS + + + + N+ +S S D L +W+ + T + H V+ AF+ +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 118 NRQIVSSSRDKTIKLWNTLAHC------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
+ + D ++N + + V GH + S ++ P+ + +I +G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG- 178
Query: 172 DRMVKVWNLTNCKLKIN------HSGHTGYLNTVTV-SPDGSLCASGGKDMNAMLWDLND 224
D+ +W++T + +I+ SGHT + ++++ S + ++ SG D LWDL
Sbjct: 179 DQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 225 GKHLHTLVH---NDIITALCFSPNRSF------QKIKLDISRTLQKSNLILYPINHGKME 275
H DI + F + F +L RT + + + E
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297
Query: 276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV 335
P V SVAFS+ R + + + +W+TL +++L T + E R
Sbjct: 298 LPI------VTSVAFSISGRLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRIS- 348
Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
CL L S+DG L G D +++W S
Sbjct: 349 -----------CLGL--SSDGSALCTGSWDKNLKIWAFS 374
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 191 GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN-RSF 248
GH+G + ++ +P+ + S +D ++W+ + H + +H + F+PN +S
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 249 QKIKLDISRTLQKSNLILYPINHGKME-TPFFSLFRDVLSVAFSVDNRQ--IVSSSRDKT 305
LD + ++ NL G M + + + S V +++ +++ S D+T
Sbjct: 124 ACGGLDSACSI--FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD 365
LW+ + +I E DV+S S S + +G D
Sbjct: 182 CVLWDVTTGQRISIFGSE---FPSGHTADVLSLSIN-----------SLNANMFISGSCD 227
Query: 366 NTIRVWQVSVTSR 378
T+R+W + +TSR
Sbjct: 228 TTVRLWDLRITSR 240
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
N+ + GS D +R+++ G+ FE H + S+A ++S S D T+KLWN
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
+ +GH +V CV F+P ++P ++G DR VKVW+L N L
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
Y++ + PD + D+ +WD + TL
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
G M F++F L + I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 6/176 (3%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L T GH +V +A NPK P T S D T+ +W L + N+ + + +G ++
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
D D Y ++ S D T+++WD E H +V F I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
T+K+WN+ + + G W C+ P + I S G+D V +L N
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGN 302
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 52 NYGVPQK--RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKD 108
NY +K + H +I I + Y LSGS D T++LW+ + FE H
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 109 VLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV 167
V+ VAF+ D S D+T+K+W+ + G V+ V + P P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
+A D +K+W+ GH ++ P + SG +D +W+ + K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 228 LHTL 231
TL
Sbjct: 263 EKTL 266
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
+ F + + V + F ++++ ++LWN + ++ + V +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
+N IIV + D ++V+N + ++ H Y+ ++ V P SG D+ L
Sbjct: 66 -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
W+ + L H + + F+P + RT++ +L TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
F+L R V V + D ++++S D TIK+W D +TK V L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
+ + S P + +G D T+++W S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
N+ + GS D +R+++ G+ FE H + S+A ++S S D T+KLWN
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
+ +GH +V CV F+P ++P ++G DR VKVW+L N L
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
Y++ + PD + D+ +WD + TL
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
G M F++F L + I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 6/176 (3%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
L T GH +V +A NPK P T S D T+ +W L + N+ + + +G ++
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
D D Y ++ S D T+++WD E H +V F I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
T+K+WN+ + + G W C+ P + I S G+D V +L N
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGN 302
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 52 NYGVPQK--RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKD 108
NY +K + H +I I + Y LSGS D T++LW+ + FE H
Sbjct: 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 109 VLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV 167
V+ VAF+ D S D+T+K+W+ + G V+ V + P P ++
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
+A D +K+W+ GH ++ P + SG +D +W+ + K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 228 LHTL 231
TL
Sbjct: 263 EKTL 266
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
+ F + + V + F ++++ ++LWN + ++ + V +F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
+N IIV + D ++V+N + ++ H Y+ ++ V P SG D+ L
Sbjct: 66 -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
W+ + L H + + F+P + RT++ +L TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
F+L R V V + D ++++S D TIK+W D +TK V L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
+ + S P + +G D T+++W S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
+L+ + DN++ +W + D + +++ +IS + +GNY G+ ++LW
Sbjct: 38 VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
D+ K R H+ V S+++ N I+SS SR I + GHS
Sbjct: 95 DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
V +R++P+ ++ + S G D +V VW + + H G + V P
Sbjct: 152 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
++ A+GG D + +W++ G L + + + ++ +SP+ +L ++
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 265
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
L+++ VLS+ S D + S++ D+T++LW
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 54 GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA 113
G + L FI I S DG Y SG+ D + ++D+A GK E H + S+
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 114 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN 160
FS D++ +V++S D IK+++ + H GH+ WV V F P+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYD-VQHANLAGTLSGHASWVLNVAFCPD 259
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 14/295 (4%)
Query: 18 WVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
W TN K +T+++ S D+ + +WK + + Q L+GH + + +S
Sbjct: 36 WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---QWSLEGHQLGVVSVDISHTL 92
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
A S S D +RLWDL GK + + D ++AFS D++ + + + + ++ +
Sbjct: 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG-V 151
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL 196
K D ++ + +SP+ + S D ++ ++++ KL GH +
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDI 255
++T SPD L + D ++D+ TL H + + F P+ +
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH------F 263
Query: 256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
+ ++ ++ + FF V V ++ + +IVS D+ I +++
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
+L+ + DN++ +W + D + +++ +IS + +GNY G+ ++LW
Sbjct: 129 VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
D+ K R H+ V S+++ N I+SS SR I + GHS
Sbjct: 186 DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
V +R++P+ ++ + S G D +V VW + + H G + V P
Sbjct: 243 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
++ A+GG D + +W++ G L + + + ++ +SP+ +L ++
Sbjct: 301 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 356
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
L+++ VLS+ S D + S++ D+T++LW
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
+L+ + DN++ +W + D + +++ +IS + +GNY G+ ++LW
Sbjct: 118 VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
D+ K R H+ V S+++ N I+SS SR I + GHS
Sbjct: 175 DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
V +R++P+ ++ + S G D +V VW + + H G + V P
Sbjct: 232 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
++ A+GG D + +W++ G L + + + ++ +SP+ +L ++
Sbjct: 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 345
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
L+++ VLS+ S D + S++ D+T++LW
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
L GH ++ NP +LS S D+T+ +W + + V + GH+ + D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 70 IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
+ + +L GS D+ L +WD T++ + HT +V ++F+ + I+++
Sbjct: 237 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
S DKT+ LW+ L + K + + H D + V++SP H I+ S+G DR + VW+L+
Sbjct: 296 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 353
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDL 222
+L H GHT ++ + +P+ + S +D +W +
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
+ + GH V +A + S + D L+IW TR++ N P + H+
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-TRNN-NTSKPSHTVDAHTA 278
Query: 66 FISDIVLSSDGNYALS-GSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAFSVDNRQIVS 123
++ + + + L+ GS DKT+ LWDL K FE H ++ V +S N I++
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 124 SS-RDKTIKLWNTLAHCKFTIVED-------------GHSDWVSCVRFSPNHQNPIIVSA 169
SS D+ + +W+ + ED GH+ +S ++PN + II S
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWIICSV 397
Query: 170 GWDRMVKVWNLT 181
D +++VW +
Sbjct: 398 SEDNIMQVWQMA 409
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ 57
GH ++ + NP P I S S DN + +W++ + N P+
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPE 419
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
L GH ++ NP +LS S D+T+ +W + + V + GH+ + D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 70 IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
+ + +L GS D+ L +WD T++ + HT +V ++F+ + I+++
Sbjct: 239 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
S DKT+ LW+ L + K + + H D + V++SP H I+ S+G DR + VW+L+
Sbjct: 298 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 355
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPD 204
+L H GHT ++ + +P+
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
+ + GH V +A + S + D L+IW TR++ N P + H+
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-TRNN-NTSKPSHTVDAHTA 280
Query: 66 FISDIVLSSDGNYALS-GSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAFSVDNRQIVS 123
++ + + + L+ GS DKT+ LWDL K FE H ++ V +S N I++
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 124 SS-RDKTIKLWNTLAHCKFTIVED-------------GHSDWVSCVRFSPNHQNPIIVSA 169
SS D+ + +W+ + ED GH+ +S ++PN + II S
Sbjct: 341 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWIICSV 399
Query: 170 GWDRMVKVWNLT 181
D +++VW +
Sbjct: 400 SEDNIMQVWQMA 411
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ 57
GH ++ + NP P I S S DN + +W++ + N P+
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPE 421
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
L GH ++ NP +LS S D+T+ +W + + V + GH+ + D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 70 IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
+ + +L GS D+ L +WD T++ + HT +V ++F+ + I+++
Sbjct: 241 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
S DKT+ LW+ L + K + + H D + V++SP H I+ S+G DR + VW+L+
Sbjct: 300 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 357
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPD 204
+L H GHT ++ + +P+
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
+ + GH V +A + S + D L+IW TR++ N P + H+
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-TRNN-NTSKPSHTVDAHTA 282
Query: 66 FISDIVLSSDGNYALS-GSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAFSVDNRQIVS 123
++ + + + L+ GS DKT+ LWDL K FE H ++ V +S N I++
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 124 SS-RDKTIKLWNTLAHCKFTIVED-------------GHSDWVSCVRFSPNHQNPIIVSA 169
SS D+ + +W+ + ED GH+ +S ++PN + II S
Sbjct: 343 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWIICSV 401
Query: 170 GWDRMVKVWNLT 181
D +++VW +
Sbjct: 402 SEDNIMQVWQMA 413
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP 56
GH ++ + NP P I S S DN + +W++ + N P
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 422
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
L GH ++ NP +LS S D+T+ +W ++ V + GH+ + D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 70 I---VLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQI 121
+ +L + +L GS D+ L +WD + T++ + HT +V ++F+ + I
Sbjct: 233 VSWHLL----HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 122 VSS-SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
+++ S DKT+ LW+ L + K + + H D + V++SP H I+ S+G DR + VW+
Sbjct: 289 LATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLNVWD 346
Query: 180 LTNC--------------KLKINHSGHTGYLNTVTVSPD 204
L+ +L H GHT ++ + +P+
Sbjct: 347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 101 RFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVED------GHSDWVS 153
R H K+ ++++ + + ++S+S D TI LW+ A K V D GH+ V
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 154 CVRFSPNHQNPIIVSAGWDRMVKVWNL-TNCKLKINHS--GHTGYLNTVTVSPDGS-LCA 209
V + H++ + S D+ + +W+ +N K +HS HT +N ++ +P + A
Sbjct: 232 DVSWHLLHES-LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 210 SGGKDMNAMLWDLNDGK-HLHTLV-HNDIITALCFSPN 245
+G D LWDL + K LH+ H D I + +SP+
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ 57
GH ++ + NP P I S S DN + +W++ + N P+
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPE 415
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
L+GHS + + SDG SG D +++WD + +H V +VA+
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 120 QIVSS---SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-DRMV 175
++++ + DK I WN + V+ G V+ + +SP H I+ + G+ D +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSP-HSKEIMSTHGFPDNNL 329
Query: 176 KVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228
+W+ ++ L +++ H + +SPDG + ++ D N W + DG H+
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 350 LAWSTDGQTLFAGYSDNTIRVW 371
LAW +DG L +G +DN +++W
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIW 244
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 110/278 (39%), Gaps = 25/278 (8%)
Query: 43 IWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102
+W ++ V Q ++I L DG + G TL +WDLAA +
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 103 E--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN 160
E ++A S D++ S D I +W+ L + GH+D SC+ S +
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD-LHNQTLVRQFQGHTDGASCIDISND 194
Query: 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
+ + G D V+ W+L + ++ T + ++ P G A G + N +
Sbjct: 195 GTK--LWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 221 DLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-F 279
+N +H + +L F+ + + K NL+ TP+
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKW-------FVSTGKDNLL------NAWRTPYGA 298
Query: 280 SLFR-----DVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312
S+F+ VLS SVD++ IV+ S DK ++ +
Sbjct: 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 16/255 (6%)
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG---KTTRRFEDHTKD--VLSVAFSVD 117
H + + +S+ + +G +++WD++ + + +D + S D
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 118 NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
++ T+ +W+ LA I + S +C + + + + S D + V
Sbjct: 109 GCTLIVGGEASTLSIWD-LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
W+L N L GHT + + +S DG+ +GG D WDL +G+ L I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD-VLSVAFSVDNRQ 296
+L + P + ++ ++ SN+ + +N K + L VLS+ F+ +
Sbjct: 228 FSLGYCPTGEW------LAVGMESSNVEVLHVN--KPDKYQLHLHESCVLSLKFAYCGKW 279
Query: 297 IVSSSRDKTIKLWNT 311
VS+ +D + W T
Sbjct: 280 FVSTGKDNLLNAWRT 294
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 12/222 (5%)
Query: 1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
++ T +++ L +A +P SC D + +W L ++
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTL-----VRQF 179
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
+GH+ S I +S+DG +G D T+R WDL G+ ++ D T + S+ +
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEW 238
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
+ +++ + K+ + H V ++F+ + VS G D ++ W
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWR- 293
Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222
T I S + + + +S D +G D A ++++
Sbjct: 294 TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 32/155 (20%)
Query: 225 GKHLHTLVHNDIITALCFS-PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL-- 281
+ ++TL H +++ A+ S P R T K + ++ I+H ++P L
Sbjct: 42 ARQINTLNHGEVVCAVTISNPTRHV--------YTGGKGCVKVWDISHPGNKSPVSQLDC 93
Query: 282 -FRD--VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ 338
RD + S D ++ T+ +W+ A T ++ EL
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------PTPRIKAEL------- 137
Query: 339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
+ P C +LA S D + F+ SD I VW +
Sbjct: 138 --TSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
++A S D++ S D I +W DL + +V + + D
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVW-----------DLHNQTLVRQFQ-------GHTDGAS 187
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQV 373
C+ + S DG L+ G DNT+R W +
Sbjct: 188 CIDI--SNDGTKLWTGGLDNTVRSWDL 212
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-------KGHS 64
L GH ++ N +LS S D+T+ +W D N G + ++ GHS
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW-----DINAGPKEGKIVDAKAIFTGHS 229
Query: 65 HFISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNR 119
+ D+ + +L GS D+ L +WD + T++ + HT +V ++F+ +
Sbjct: 230 AVVEDVAWHL-LHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 120 QIVSS-SRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
I+++ S DKT+ LW+ L + K + + H D + V +SP H I+ S+G DR + V
Sbjct: 289 FILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP-HNETILASSGTDRRLNV 346
Query: 178 WNLTNC--------------KLKINHSGHTGYLNTVTVSPD 204
W+L+ +L H GHT ++ + +P+
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPN 387
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 49/243 (20%)
Query: 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR-----DDTNYGVPQKRLKGHSHFISD 69
H G V + P+ P I + + + ++++ T+ D + P RL+GH
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 70 IVLSSD-GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
+ +S+ + LS S D T+ LWD+ AG + VD + I +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI-------------VDAKAIFT----- 226
Query: 129 TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL-TNCKLKI 187
GHS V V + H++ + S D+ + +W+ +N K
Sbjct: 227 ------------------GHSAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRSNTTSKP 267
Query: 188 NH--SGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTLV-HNDIITALCF 242
+H HT +N ++ +P + A+G D LWDL + K LHT H D I + +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 243 SPN 245
SP+
Sbjct: 328 SPH 330
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN 52
GH ++ + NP P I S S DN + IW++ + N
Sbjct: 374 GHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 412
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-------KGHS 64
L GH ++ N +LS S D+T+ +W D N G + ++ GHS
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW-----DINAGPKEGKIVDAKAIFTGHS 229
Query: 65 HFISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNR 119
+ D+ + +L GS D+ L +WD + T++ + HT +V ++F+ +
Sbjct: 230 AVVEDVAWHL-LHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 120 QIVSS-SRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
I+++ S DKT+ LW+ L + K + + H D + V +SP H I+ S+G DR + V
Sbjct: 289 FILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP-HNETILASSGTDRRLNV 346
Query: 178 WNLTNC--------------KLKINHSGHTGYLNTVTVSPD 204
W+L+ +L H GHT ++ + +P+
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPN 387
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 49/243 (20%)
Query: 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR-----DDTNYGVPQKRLKGHSHFISD 69
H G V + P+ P I + + + ++++ T+ D + P RL+GH
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 70 IVLSSD-GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
+ +S+ + LS S D T+ LWD+ AG + VD + I +
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI-------------VDAKAIFT----- 226
Query: 129 TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL-TNCKLKI 187
GHS V V + H++ + S D+ + +W+ +N K
Sbjct: 227 ------------------GHSAVVEDVAWHLLHES-LFGSVADDQKLXIWDTRSNTTSKP 267
Query: 188 NH--SGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTLV-HNDIITALCF 242
+H HT +N ++ +P + A+G D LWDL + K LHT H D I + +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 243 SPN 245
SP+
Sbjct: 328 SPH 330
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 76 GNYALSGSWDKTLRLWDLA-AGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133
GN+ ++GSW +R W++ +G+T + + HT VL V +S D ++ ++S DKT K+W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 134 NTLAHCKFTIVEDGHSDWVSCVRF--SPNHQNPIIVSAGWDRMVKVWN 179
+ ++ I + H V + + +PN+ +++ WD+ +K W+
Sbjct: 114 DLSSNQAIQIAQ--HDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWD 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 26 PKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84
P P L + S N + W++ D+ +P K + H+ + D+ S DG+ + S
Sbjct: 50 PTLPGNFLIAGSWANDVRCWEV--QDSGQTIP-KAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAF--SVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
DKT ++WDL++ + + H V ++ + + + +++ S DKT+K W+T +
Sbjct: 107 DKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
+++ + + V + P+ V A +R + V+ L N
Sbjct: 166 VLQLPERCYCADVIY------PMAVVATAERGLIVYQLEN 199
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 150 DWVSCVRFSPNH-QNPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGS 206
D + C+ FSP +++ W V+ W + + I + HTG + V S DGS
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
+ D A +WDL+ + + H+ + +
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTI 133
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 80 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 139
+SGS D T+ +++ K F +HTK V SV ++ D S+ D TI L+N +
Sbjct: 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223
Query: 140 KFTIVED------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
K + ED HS V + +SP+ I SA D+ +K+WN+ K++
Sbjct: 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTK--IASASADKTIKIWNVATLKVE 274
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 132/345 (38%), Gaps = 81/345 (23%)
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKDVLSVAFSVD 117
HSH + S G Y SG +R+WD T F KD+ ++ +
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI---SWDSE 114
Query: 118 NRQI--VSSSRDKT--IKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172
+++I V R++ + L++T ++ T G + ++ V F P+ II S D
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLT----GQARAMNSVDFKPSRPFRII-SGSDD 169
Query: 173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232
V ++ K K HT ++++V +PDGSL AS G D +L++ DG T V
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGV 227
Query: 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292
D D + + S V + +S
Sbjct: 228 FED------------------DSLKNVAHSG--------------------SVFGLTWSP 249
Query: 293 DNRQIVSSSRDKTIKLWNT---------------------LAHCKFTIVDLETKKMVEEL 331
D +I S+S DKTIK+WN + K +V + + +
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309
Query: 332 RPDV--VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
P++ + Q +L+ S DG+TLF+ ++ I W +S
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 86/247 (34%), Gaps = 68/247 (27%)
Query: 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL------ 228
V V +LT+ ++ HS T T SP G CASG N +WD H+
Sbjct: 44 VPVGSLTDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 229 -----------------------------HTLVHND------------IITALCFSPNRS 247
H + + + ++ F P+R
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160
Query: 248 FQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK 307
F+ I T+ ++ K ++ F + V SV ++ D S+ D TI
Sbjct: 161 FRIISGSDDNTVA-----IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215
Query: 308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT 367
L+N + K + + ++ K V A L WS DG + + +D T
Sbjct: 216 LYNGVDGTKTGVFEDDSLKNV-------------AHSGSVFGLTWSPDGTKIASASADKT 262
Query: 368 IRVWQVS 374
I++W V+
Sbjct: 263 IKIWNVA 269
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/398 (20%), Positives = 140/398 (35%), Gaps = 106/398 (26%)
Query: 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK-RLK--G 62
+ + T H +V + NP S D T++++ D T GV + LK
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNVA 237
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR------RFED------------ 104
HS + + S DG S S DKT+++W++A K + R ED
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 105 -------------------------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 139
H K + +++ S D + + S+ + I W+
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV---------------------- 177
+ D H+ ++ ++ + + + WD +KV
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414
Query: 178 ----------WNLTNCKLKINHSGHTGYLNTVTVSPDGS---------LCASGGKDMNAM 218
+ C I H G L V +S + S A GG+D
Sbjct: 415 LGLAVSADGDIAVAACYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH 473
Query: 219 LWDLNDG--KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTL----QKSNLILYPINHG 272
++ L+ + T+VH IT++ FS N +F + D SR + +N L N
Sbjct: 474 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL-VATDQSRKVIPYSVANNFELAHTNSW 532
Query: 273 KMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
T V V++S DN ++ + S D ++ +WN
Sbjct: 533 TFHT------AKVACVSWSPDNVRLATGSLDNSVIVWN 564
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG 96
+D+ + ++KL+ V + + H I+ + S++G + ++ + + + +A
Sbjct: 468 QDSKVHVYKLS----GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 523
Query: 97 ---KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS 153
T + HT V V++S DN ++ + S D ++ +WN I+ G + +S
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-AHAMS 582
Query: 154 CVRFSPNHQNPIIVSAGWDRMVKVWNL 180
V IVSAG D +K WN+
Sbjct: 583 SVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 44/314 (14%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS 73
GHN +T ++++ T+ S + + W ++ +N P H+ I+ I +
Sbjct: 322 GHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDV----HATMITGIKTT 376
Query: 74 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV--------LSVAFSVDNRQIVSSS 125
S G+ + SWD L++ + AG + D +K V L +A S D V++
Sbjct: 377 SKGDL-FTVSWDDHLKV--VPAGGSGV---DSSKAVANKLSSQPLGLAVSADGDIAVAAC 430
Query: 126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
K I ++ +H K T V ++ SCV S + Q + G D V V+ L+ +
Sbjct: 431 Y-KHIAIY---SHGKLTEVPISYNS--SCVALSNDKQ--FVAVGGQDSKVHVYKLSGASV 482
Query: 186 -KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL-NDGKHLHT---LVHNDIITAL 240
++ H + +V S +G+ + + + + + N+ + HT H + +
Sbjct: 483 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 542
Query: 241 CFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV---DNRQ 296
+SP N LD S + N P +H P +S SV +
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNMN---KPSDH-----PIIIKGAHAMSSVNSVIWLNETT 594
Query: 297 IVSSSRDKTIKLWN 310
IVS+ +D IK WN
Sbjct: 595 IVSAGQDSNIKFWN 608
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 17/208 (8%)
Query: 22 IATNPKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL 80
+A NP T+L SC D + IW D ++ +GH + + S GNY
Sbjct: 22 LAWNPA--GTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLA 77
Query: 81 SGSWDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138
S S+D T +W + E H +V SVA++ + + SRDK++ +W
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137
Query: 139 CKFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN----CKLKINHSGH 192
++ V + H+ V V + P+ + ++ SA +D VK++ C + GH
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLE--GH 193
Query: 193 TGYLNTVTVSPDGSLCASGGKDMNAMLW 220
+ ++ P G AS D +W
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
TL GH V +A P + + +CSRD ++ +W++ +D V L H+ + +
Sbjct: 100 TLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECV--SVLNSHTQDVKHV 156
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
V S S+D T++L+ E H V S+AF +++ S S D+
Sbjct: 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 129 TIKLW 133
T+++W
Sbjct: 217 TVRIW 221
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 121 IVSSSRDKTIKLWNTLAH---CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
+ S D+ I++W T CK +++ +GH V V +SP + SA +D +
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICK-SVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87
Query: 178 W--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL---- 231
W N + + GH + +V +P G+L A+ +D + +W++++ +
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 232 VHNDIITALCFSPNRS-FQKIKLDISRTL---QKSNLILYPINHGKMETPFFSLFRDVLS 287
H + + + P++ D + L ++ + + G T V S
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--------VWS 199
Query: 288 VAFSVDNRQIVSSSRDKTIKLW 309
+AF +++ S S D+T+++W
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW 221
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 37/230 (16%)
Query: 154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTN----CKLKINHSGHTGYLNTVTVSPDGSLCA 209
C + N ++ S G DR +++W CK ++ GH + V SP G+ A
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLA 77
Query: 210 SGGKDMNAMLWDLN--DGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL 266
S D +W N D + + TL H + + ++ ++P+ + ++ + ++ +
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL------LATCSRDKSVWV 131
Query: 267 YPINHGKMETPFFSLF----RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322
+ ++ + E S+ +DV V + + S+S D T+KL+
Sbjct: 132 WEVDE-EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR------------ 178
Query: 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372
EE V + + SLA+ GQ L + D T+R+W+
Sbjct: 179 ------EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD 50
H+ V +A NPK P + SCS D + WK R +
Sbjct: 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 51/173 (29%)
Query: 56 PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSV 112
P L GH + LS +SGSWDKT ++W G + H D V
Sbjct: 96 PLYTLIGHQGNVCS--LSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVV 151
Query: 113 AFSVDNRQIVSSSRDKTIKLWNTLAHCK------------FTIVED-------------- 146
+FS + +++S DKTIKLW K +V+D
Sbjct: 152 SFS--ENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209
Query: 147 -------------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
GH +V C++ PN IVS G DR V++W+ N LK
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSLK 259
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL---NTVTVSP 203
GH V + F Q+ +++S WD+ KVW L N H + V+ S
Sbjct: 102 GHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 204 DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK------IKL---- 253
+ L AS K + LW + + +HND++ L + F IKL
Sbjct: 156 NKFLTASADKTIK--LWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXH 213
Query: 254 --DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
D+ RT + +Y I + N IVS D+T+++W+
Sbjct: 214 TGDVLRTYEGHESFVYCIKL--------------------LPNGDIVSCGEDRTVRIWS 252
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD--MNAM-LWDL 222
+ S D V++W+ + L G+LN+V + L GGKD +N + L+
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
+ L+TL+ H + +L F ++ ++ +L+ H +
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHN-------AS 144
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
D V+FS + +++S DKTIKLW
Sbjct: 145 VWDAKVVSFS--ENKFLTASADKTIKLWQ 171
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4 ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
ET +L TL GH G V ++ +PKF + SCS D ++IWK + N Q +
Sbjct: 41 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHA 96
Query: 63 -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
HS ++ + + G L S D + + + TT + H V S +++
Sbjct: 97 VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
++R+ V+ D +K+W + + ++E +GHSDWV V +SP
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
+ S DR +W N K + L + S G++ A G D
Sbjct: 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
Query: 216 NAMLWDLN-DGK 226
LW N +GK
Sbjct: 277 KVTLWKENLEGK 288
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 3 TETLQLRGTLNGHNGWVTQIATNPK--FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
+T L TL GH+ WV +A +P + S S+D T IIW D G +K L
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT---QDNEQGPWKKTL 247
Query: 61 KGHSHFISDIV----LSSDGN-YALSGSWDKTLRLW 91
F D++ S GN ALSG D + LW
Sbjct: 248 LKEEKF-PDVLWRASWSLSGNVLALSGG-DNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4 ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
ET +L TL GH G V ++ +PKF + SCS D ++IWK + N Q +
Sbjct: 43 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHA 98
Query: 63 -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
HS ++ + + G L S D + + + TT + H V S +++
Sbjct: 99 VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
++R+ V+ D +K+W + + ++E +GHSDWV V +SP
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
+ S DR +W N K + L + S G++ A G D
Sbjct: 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278
Query: 216 NAMLWDLN-DGK 226
LW N +GK
Sbjct: 279 KVTLWKENLEGK 290
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 3 TETLQLRGTLNGHNGWVTQIATNPK--FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
+T L TL GH+ WV +A +P + S S+D T IIW D G +K L
Sbjct: 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT---QDNEQGPWKKTL 249
Query: 61 KGHSHFISDIVLSS---DGN-YALSGSWDKTLRLW 91
F + +S GN ALSG D + LW
Sbjct: 250 LKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLW 283
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 36/255 (14%)
Query: 81 SGSWDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138
S S+DKTL++WD +T FE+ S + + +R ++L + L
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD-LKS 175
Query: 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL---TNCKLKIN-HSG--- 191
+ + GH + V +SP + + I+ +A D VK+W++ + C + ++ H+G
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 192 ---------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
H G +N + + DG + G D LW+ ++G+ +TLV+ +
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVC---- 288
Query: 243 SPNRSFQKIKLDISRTLQK--------SNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294
N S + +K +S S + +Y + G+ T ++ V F +
Sbjct: 289 --NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346
Query: 295 RQIVSSSRDKTIKLW 309
+++ S SRD I W
Sbjct: 347 QELYSGSRDCNILAW 361
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD-------DTNYGVPQKRLK--- 61
L GH + ++ +P++ + + S D+ + +W + R D + G + ++
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 62 -GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT----RRFEDHTKDVLSVAFSV 116
H+ ++ + +SDG + L+ D +RLW+ + G+ T + +++K L S
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
Query: 117 D-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
+ + V TI ++ + + T+++ GH V C F N Q + S D +
Sbjct: 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQE--LYSGSRDCNI 358
Query: 176 KVW 178
W
Sbjct: 359 LAW 361
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 33/255 (12%)
Query: 1 MSTETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR 59
+ ET +L TL GH G V ++ +PKF + SCS D ++IWK + N Q
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIA 93
Query: 60 LKG-HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAF 114
+ HS ++ + + G L S D + + + TT + H V S ++
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 115 SV-------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFS 158
+ ++R+ V+ D +K+W + + ++E +GHSDWV V +S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 159 PN-HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
P + S DR +W N K + L + S G++ A G
Sbjct: 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 213 KDMNAMLWDLN-DGK 226
D LW N +GK
Sbjct: 274 GDNKVTLWKENLEGK 288
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4 ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
ET +L TL GH G V ++ +PKF + SCS D ++IWK + N Q +
Sbjct: 41 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK----EENGRWSQIAVHA 96
Query: 63 -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
HS ++ + + G L S D + + + TT + H V S +++
Sbjct: 97 VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
++R+ V+ D +K+W + + ++E +GHSDWV V +SP
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
+ S DR +W N K + L + S G++ A G D
Sbjct: 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
Query: 216 NAMLWDLN-DGK 226
LW N +GK
Sbjct: 277 KVTLWKENLEGK 288
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 19 VTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
V++I FP + ++S S+D L IW + +D +N + L GH ++DI + G
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN----PRTLIGHRATVTDIAIIDRG 193
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVD-NRQI--VSSSRDKTI 130
LS S D T+RLW+ G T F E+ V S+A V +RQ+ +S+S+ +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253
Query: 131 KLWNTLAHCKFTIVEDGHSDWV---------------------SCVRFSPNHQNPIIVSA 169
+ + K+ I GH V SC + + N + A
Sbjct: 254 EFG---TYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308
Query: 170 GWDR-MVKVWNL 180
G++ M+ W+L
Sbjct: 309 GYENGMLAQWDL 320
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 50 DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV 109
D+N+ + ++ + H I+ + G +S S D L++W + G R H V
Sbjct: 125 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184
Query: 110 LSVAFSVDNRQIVSSSRDKTIKLW 133
+A R ++S+S D TI+LW
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLW 208
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP 203
++ H ++ ++F P+ + ++S+ D +K+W++ + GH + + +
Sbjct: 134 IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191
Query: 204 DGSLCASGGKDMNAMLWDLNDGKHLHTL 231
G S D LW+ G +HT
Sbjct: 192 RGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 19 VTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
V++I FP + ++S S+D L IW + +D +N + L GH ++DI + G
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN----PRTLIGHRATVTDIAIIDRG 190
Query: 77 NYALSGSWDKTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVD-NRQI--VSSSRDKTI 130
LS S D T+RLW+ G T F E+ V S+A V +RQ+ +S+S+ +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 250
Query: 131 KLWNTLAHCKFTIVEDGHSDWVSCV 155
+ + K+ I GH V V
Sbjct: 251 EFG---TYGKYVIA--GHVSGVITV 270
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 50 DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV 109
D+N+ + ++ + H I+ + G +S S D L++W + G R H V
Sbjct: 122 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 181
Query: 110 LSVAFSVDNRQIVSSSRDKTIKLW 133
+A R ++S+S D TI+LW
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLW 205
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP 203
++ H ++ ++F P+ + ++S+ D +K+W++ + GH + + +
Sbjct: 131 IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 188
Query: 204 DGSLCASGGKDMNAMLWDLNDGKHLHTL 231
G S D LW+ G +HT
Sbjct: 189 RGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI- 121
H + + + SDG A+SG D ++++WDL+ + + H+ +V VA I
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV-SCVRFSPNHQNPIIV--SAGWDRMVKVW 178
+S D I LW+T T ++ SD + + V + P + G +V +
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 179 NLTNCKLKINHSGH-TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
N + + HS + TG + SP AS +D + D + + L H D +
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSP---FLASISEDCTVAVLDADFSEVFRDLSHRDFV 314
Query: 238 TALCFSP 244
T + +SP
Sbjct: 315 TGVAWSP 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 33/240 (13%)
Query: 116 VDNRQIVSSSRDKTIKLWNTLAH-----CKFTIVEDGHSDWVSCVR-FSPNHQNPIIVSA 169
V + I+ +S ++LW L KF E H D V + FS Q VS
Sbjct: 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYE--HDDIVKTLSVFSDGTQ---AVSG 157
Query: 170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGK-- 226
G D VKVW+L+ + +++ H+ +N V P ++ S G+D +LWD K
Sbjct: 158 GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217
Query: 227 -HLHTLVHNDIITALCFSP-------------NRSFQKIK-LDISRTLQKSNLILYPINH 271
+ + I T++ + P N S IK D ++T + + + +
Sbjct: 218 TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277
Query: 272 GKMETPFF-SLFRDVLSVAFSVDNRQIVS--SSRDKTIKL-WNTLAHCKFTIVDLETKKM 327
+PF S+ D D ++ S RD + W+ L H KFT V + K +
Sbjct: 278 SYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
+ N H+ V +A P LSC D +++W DT P R+ SD
Sbjct: 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW-----DTRKPKPATRID---FCASDT 227
Query: 71 VLSS-------DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS 123
+ +S D +A G + L ++ + + H++++ +A+S + ++
Sbjct: 228 IPTSVTWHPEKDDTFAC-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLA 286
Query: 124 S-SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGWDRMV 175
S S D T+ + + A + H D+V+ V +SP +H + GWD V
Sbjct: 287 SISEDCTVAVLD--ADFSEVFRDLSHRDFVTGVAWSPLDHSK--FTTVGWDHKV 336
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS- 124
F++ I +S G L KT R+ K HT VL +A+ N +++S
Sbjct: 46 FMALIXEASGGGAFLVLPLGKTGRV-----DKNVPLVXGHTAPVLDIAWXPHNDNVIASG 100
Query: 125 SRDKTIKLWN------TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
S D T+ +W L + I +GH+ V V + P QN +++SAG D ++ VW
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGXDNVILVW 159
Query: 179 NLTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225
++ L + H + +V S DG+L + +D + + G
Sbjct: 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHSHFI 67
+ GH V IA P + I S S D T+++W++ D +P + L+GH+ +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP--DGGLVLPLREPVITLEGHTKRV 134
Query: 68 SDIVL-SSDGNYALSGSWDKTLRLWDLAAGKT--TRRFEDHTKDVLSVAFSVDNRQIVSS 124
+ + N LS D + +WD+ G T + H + SV +S D I +S
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 125 SRDKTIKL 132
RDK +++
Sbjct: 195 CRDKRVRV 202
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
TL GH V +A +P + +LS DN +++W + T V H I +
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV---GTGAAVLTLGPDVHPDTIYSV 182
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSSSR- 126
S DG + DK +R+ + G R + T+ V +V S SR
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242
Query: 127 -DKTIKLWNT 135
++ + LW+T
Sbjct: 243 SERQVALWDT 252
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
IL S + +W+L ++T V + H +S + + S G A+SGS D +++W
Sbjct: 96 ILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
Query: 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNT 135
DLA + H V VA S + +S S D I LW+T
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 87 TLRLWDLAAGKT--TRRFEDHTKD--VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
+ LW+L +T +F + D V +V+ Q VS S+D IK+W+ LA
Sbjct: 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD-LAQQVVL 162
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT--GYLNT-V 199
H+ V+CV SP H++ + +S D + +W+ T C + G + GYL T +
Sbjct: 163 SSYRAHAAQVTCVAASP-HKDSVFLSCSEDNRILLWD-TRCPKPASQIGCSAPGYLPTSL 220
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKH----LHTLVHNDIITALCFSPN 245
P S G D N + L D K L + VH+ +T L FSP+
Sbjct: 221 AWHPQQSEVFVFG-DENGTV-SLVDTKSTSCVLSSAVHSQCVTGLVFSPH 268
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
+ H VT +A +P LSCS DN +++W DT P ++ +
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW-----DTRCPKPASQIGCSAPGYLPT 218
Query: 71 VLS---SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SR 126
L+ + G + T+ L D + H++ V + FS + ++S S
Sbjct: 219 SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE 278
Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGWDRMV 175
D ++ + ++ F H D+V +SP NH ++ + GWD V
Sbjct: 279 DCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHS--LLTTVGWDHQV 324
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 102/255 (40%), Gaps = 33/255 (12%)
Query: 1 MSTETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR 59
+ ET +L TL GH G V ++ +PKF + SCS D + IWK + N Q
Sbjct: 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK----EENGRWSQIA 93
Query: 60 LKG-HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAF 114
+ HS ++ + + G L S D + + + TT + H V S ++
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 115 SV-------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFS 158
+ ++R+ V+ D +K+W + + ++E +GHSDWV V +S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 159 PN-HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
P S DR +W N K + L + S G++ A G
Sbjct: 214 PTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 213 KDMNAMLWDLN-DGK 226
D LW N +GK
Sbjct: 274 GDNKVTLWKENLEGK 288
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS- 124
F++ I +S G L KT R+ K HT VL +A+ N +++S
Sbjct: 46 FMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 125 SRDKTIKLWN------TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
S D T+ +W L + I +GH+ V V + P QN +++SAG D ++ VW
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVW 159
Query: 179 NLTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225
++ L + H + +V S DG+L + +D + + G
Sbjct: 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHSHFISD 69
GH V IA P + I S S D T+++W++ D +P + L+GH+ +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP--DGGLVLPLREPVITLEGHTKRVGI 136
Query: 70 IVL-SSDGNYALSGSWDKTLRLWDLAAGKT--TRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
+ + N LS D + +WD+ G T + H + SV +S D I +S R
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 127 DKTIKL 132
DK +++
Sbjct: 197 DKRVRV 202
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
TL GH V +A +P + +LS DN +++W + T V H I +
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV---GTGAAVLTLGPDVHPDTIYSV 182
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSSSR- 126
S DG + DK +R+ + G R + T+ V +V S SR
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242
Query: 127 -DKTIKLWNT 135
++ + LW+T
Sbjct: 243 SERQVALWDT 252
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 56 PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
P +L GH IS + + LS S D TLR+W G + F H++ ++S ++
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV 298
Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174
D++ ++S S D +++LW+ + + + DG + R S + Q + A D
Sbjct: 299 GDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVP--IFAGRISQDGQKYAV--AFMDGQ 353
Query: 175 VKVWNLT--NCKLKINHSGHTGYLNTVTV 201
V V++L N K + + G LN + +
Sbjct: 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPI 382
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 282 FRDVLSVAFSVDNRQIVSSS---RDKTIKLW---NTLAH-CKFTIVDLETKK-----MVE 329
F +L +DN IVSS+ D++I + N++A + D E KK ++
Sbjct: 35 FVKILKEIVKLDN--IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIA 92
Query: 330 ELR-PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW 371
ELR P +S S+ LAWS DG ++ G + +R+W
Sbjct: 93 ELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 73 SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKL 132
S DGN ++G + LRLW+ G H ++SV ++ D I+S + L
Sbjct: 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL 175
Query: 133 WNTLAHC---KFTIVEDGHS 149
WN ++ F + E G S
Sbjct: 176 WNVISGTVMQHFELKETGGS 195
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 4 ETLQLRGT------LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ 57
E L +G+ L GH +TQ+ N K D + SCS+D++ +W Y +
Sbjct: 14 ENLYFQGSHMKAIKLTGHERPLTQVKYN-KEGDLLFSCSKDSSASVW--------YSLNG 64
Query: 58 KRL---KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK 97
+RL GH+ I I + Y ++GS D +++LWD++ G+
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS 206
GH ++ V++ N + ++ S D VW N + GHTG + ++ V
Sbjct: 30 GHERPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP 244
C +G D + LWD+++G+ + T + + FSP
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP 125
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 17/156 (10%)
Query: 73 SSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIK 131
S+ G Y ++G D + +D++ + + H K + + FS D ++SSRD
Sbjct: 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243
Query: 132 LWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKLKIN 188
L + +++ +D + II+ G D N + +
Sbjct: 244 LVDV---STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300
Query: 189 H----------SGHTGYLNTVTVSPDGSLCASGGKD 214
H GH G LNTV +SP G+ ASGG+D
Sbjct: 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
+L GH ++ + + +G+ S S D + +W G+ + HT + S+
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 119 RQIVSSSRDKTIKLWN 134
+ V+ S D +IKLW+
Sbjct: 87 KYCVTGSADYSIKLWD 102
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL---------VHNDII 237
I +GH L V + +G L S KD +A +W +G+ L TL + D
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 238 TALCFSPNRSFQKIKL-DISR----TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292
T C + + + IKL D+S KS + + + F ++ +V+ S+
Sbjct: 86 TKYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAW 352
+ +I RD E K+ EE ++ T W
Sbjct: 145 NIYEI---ERDSATH---------------ELTKVSEEPIHKII---THEGLDAATVAGW 183
Query: 353 STDGQTLFAGYSDNTIRVWQVS 374
ST G+ + AG+ D I + VS
Sbjct: 184 STKGKYIIAGHKDGKISKYDVS 205
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGVPQKRLKG 62
T+Q GH + ++ +P+ P+ +LS S+D+ L +W + D +G ++G
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----GVEG 195
Query: 63 HSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
H D VLS+D G +S D +L+LW + ++R + K+ + N
Sbjct: 196 H----RDEVLSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKESYDYNPNKTN 247
Query: 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF 157
R +S H D H ++V CVR+
Sbjct: 248 RPFISQK-----------IHFPDFSTRDIHRNYVDCVRW 275
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 103 EDHTKDVLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDWVS 153
EDH + + V F+ +++ + ++ + L+ + + +++ D ++ +
Sbjct: 51 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 110
Query: 154 CV-RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG 211
C + N +P++ AG ++++ N + ++ GH +N + P D +L S
Sbjct: 111 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 170
Query: 212 GKDMNAMLWDL 222
KD LW++
Sbjct: 171 SKDHALRLWNI 181
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGVPQKRLKG 62
T+Q GH + ++ +P+ P+ +LS S+D+ L +W + D +G ++G
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----GVEG 159
Query: 63 HSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
H D VLS+D G +S D +L+LW + ++R + K+ + N
Sbjct: 160 H----RDEVLSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKESYDYNPNKTN 211
Query: 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF 157
R +S H D H ++V CVR+
Sbjct: 212 RPFISQK-----------IHFPDFSTRDIHRNYVDCVRW 239
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 103 EDHTKDVLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDWVS 153
EDH + + V F+ +++ + ++ + L+ + + +++ D ++ +
Sbjct: 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 74
Query: 154 CV-RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG 211
C + N +P++ AG ++++ N + ++ GH +N + P D +L S
Sbjct: 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 134
Query: 212 GKDMNAMLWDLN 223
KD LW++
Sbjct: 135 SKDHALRLWNIQ 146
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGVPQKRLKG 62
T+Q GH + ++ +P+ P+ +LS S+D+ L +W + D +G ++G
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----GVEG 158
Query: 63 HSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
H D VLS+D G +S D +L+LW + ++R + K+ + N
Sbjct: 159 H----RDEVLSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKESYDYNPNKTN 210
Query: 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF 157
R +S H D H ++V CVR+
Sbjct: 211 RPFISQK-----------IHFPDFSTRDIHRNYVDCVRW 238
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 103 EDHTKDVLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDWVS 153
EDH + + V F+ +++ + ++ + L+ + + +++ D ++ +
Sbjct: 14 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 73
Query: 154 CV-RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG 211
C + N +P++ AG ++++ N + ++ GH +N + P D +L S
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 133
Query: 212 GKDMNAMLWDLN 223
KD LW++
Sbjct: 134 SKDHALRLWNIQ 145
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGVPQKRLKG 62
T+Q GH + ++ +P+ P+ +LS S+D+ L +W + D +G ++G
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----GVEG 158
Query: 63 HSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
H D VLS+D G +S D +L+LW + ++R + K+ + N
Sbjct: 159 H----RDEVLSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKESYDYNPNKTN 210
Query: 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF 157
R +S H D H ++V CVR+
Sbjct: 211 RPFISQK-----------IHFPDFSTRDIHRNYVDCVRW 238
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 103 EDHTKDVLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDWVS 153
EDH + + V F+ +++ + ++ + L+ + + +++ D ++ +
Sbjct: 14 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 73
Query: 154 CV-RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG 211
C + N +P++ AG ++++ N + ++ GH +N + P D +L S
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 133
Query: 212 GKDMNAMLWDLN 223
KD LW++
Sbjct: 134 SKDHALRLWNIQ 145
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGVPQKRLKG 62
T+Q GH + ++ +P+ P+ +LS S+D+ L +W + D +G ++G
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG----GVEG 154
Query: 63 HSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
H D VLS+D G +S D +L+LW + ++R + K+ + N
Sbjct: 155 H----RDEVLSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKESYDYNPNKTN 206
Query: 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF 157
R +S H D H ++V CVR+
Sbjct: 207 RPFISQK-----------IHFPDFSTRDIHRNYVDCVRW 234
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 103 EDHTKDVLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDWVS 153
EDH + + V F+ +++ + ++ + L+ + + +++ D ++ +
Sbjct: 10 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 69
Query: 154 CV-RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG 211
C + N +P++ AG ++++ N + ++ GH +N + P D +L S
Sbjct: 70 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 129
Query: 212 GKDMNAMLWDL 222
KD LW++
Sbjct: 130 SKDHALRLWNI 140
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR----FEDHTKDVLSVAFS 115
++GH + + + S+DG Y + S DK++ +W+ ++H++DV V +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165
+ SSS D T+++W +D DW CV H+ +
Sbjct: 163 PSEALLASSSYDDTVRIW-----------KDYDDDW-ECVAVLNGHEGTV 200
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 81 SGSWDKTLRLW--DLAAGKTTRR-----FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133
+GS+D T+ +W + +A +T E H +V VA+S D + + SRDK++ +W
Sbjct: 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Query: 134 NT-----LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN----CK 184
T C + E HS V V + P+ ++ S+ +D V++W + C
Sbjct: 135 ETDESGEEYECISVLQE--HSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECV 190
Query: 185 LKINHSGHTG 194
+N GH G
Sbjct: 191 AVLN--GHEG 198
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD 343
+V VA+S D + + SRDK++ +W ET + EE V Q D
Sbjct: 109 EVKGVAWSNDGYYLATCSRDKSVWIW-------------ETDESGEEYECISVLQEHSQD 155
Query: 344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372
+ W L + D+T+R+W+
Sbjct: 156 VKHVI---WHPSEALLASSSYDDTVRIWK 181
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 85 DKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFS-VDNRQIVSSSRDKTIKLWNTLAHCKF 141
D ++ +WDL T + + H K +LS+ + D ++SS RD T+ LWN + +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
+ +W +F+P + + A +D ++V L N
Sbjct: 299 SQFP-ARGNWCFKTKFAPEAPD-LFACASFDNKIEVQTLQN 337
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 25/220 (11%)
Query: 32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRL 90
I++ + DN + T + N R HS + + ++ + L SG + + +
Sbjct: 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140
Query: 91 WDLAAGKTTRRFEDHTK-----------DVLSVAFSVDNRQIVSSSRDKTI-KLWNTLA- 137
WD+ K T ++T +V+S+A++ + +S+ +W+ A
Sbjct: 141 WDM--NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198
Query: 138 ----HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNL--TNCKLKINH 189
H +T G +S V + P + + + G D + +W+L N L+ +
Sbjct: 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN 258
Query: 190 SGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228
GH G L+ D L S G+D +LW+ + L
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 110/275 (40%), Gaps = 60/275 (21%)
Query: 75 DGNYALSGSWDKTLRLWDLAAGKTTR---------RFED----HTKDVLSVAFSVDNRQI 121
D N++ D +L LW L A + + +F D H + +A ++DN +
Sbjct: 38 DANFST----DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKI--IAGALDNGSL 91
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT 181
S ++ N++A +F+ HS V V+F+ N ++ S G + + +W++
Sbjct: 92 ELYSTNEANNAINSMA--RFS----NHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMN 144
Query: 182 NC-KLKINHSGHTGYLNTVTVSPDGSLC---------ASGGKDMNAMLWDLNDGK---HL 228
C + N++ T + +V SL AS G A +WDL K HL
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204
Query: 229 HTLVHNDII----TALCFSPNRSFQKIKLDISRT--------LQKSNLILYPINHGKMET 276
N I + + + P S + S L+ +N L +N G
Sbjct: 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ-- 262
Query: 277 PFFSLFRDVLSVAFS-VDNRQIVSSSRDKTIKLWN 310
+ +LS+ + D ++SS RD T+ LWN
Sbjct: 263 ------KGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 8 LRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
L L GH G V Q+A +P + + + SCS D +IIW R++ GH
Sbjct: 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW---REENGTWEKSHEHAGHDSS 105
Query: 67 ISDIVLSSDGNYAL---SGSWDKTLRLWDLAAG---KTTRRFEDHTKDVLSVAFS----- 115
++ + + +Y L GS D + L + + HT +V+++
Sbjct: 106 VNSVCWAPH-DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164
Query: 116 ---VDN---------RQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNH 161
+D+ ++ S D IKLW ++ + + HSDWV V ++P+
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224
Query: 162 QNP--IIVSAGWDRMVKVW 178
P I S D V +W
Sbjct: 225 GLPTSTIASCSQDGRVFIW 243
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
++ + S D+++K+++ + I + GH V V ++ I+ S +DR V +W
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 179 NLTNCKLKIN--HSGHTGYLNTVTVSPD--GSLCASGGKDMNAML--------WDLNDGK 226
N + + H+GH +N+V +P G + A G D L W++
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146
Query: 227 HLHTLVHNDIITALCFSPN 245
+ HT+ N + A P
Sbjct: 147 NAHTIGCNAVSWAPAVVPG 165
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 12 LNGHNGWVTQIATNPKF---PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
L H+ WV +A P TI SCS+D + IW +N P K L + +
Sbjct: 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP-KLLHKFNDVVW 266
Query: 69 DIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV 116
+ S N A+SG D + LW + D K SV+ SV
Sbjct: 267 HVSWSITANILAVSGG-DNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCAS 210
V ++ S HQ I+++ D +K+ + C + GH +++++ D L ++
Sbjct: 201 VHLIKDSDGHQ--FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSA 258
Query: 211 GGKDMNAMLWDLNDGKHLHTLVHNDIITALC----FSPNRSFQK-----IKLDISRTLQK 261
GG D WD GK+L T +N +I +P R FQ I+ +S+ ++
Sbjct: 259 GGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR-FQNENNDIIEFAVSKIIKS 316
Query: 262 SNL 264
NL
Sbjct: 317 KNL 319
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 103
L GH HF+S I D LS D + WD GK F+
Sbjct: 237 LFGHKHFVSSICCGKDY-LLLSAGGDDKIFAWDWKTGKNLSTFD 279
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED----HTKDVLSVAFSVD 117
GH + D+V G + + S D+ ++++ L + D H ++++ ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 118 N--RQIVSSSRDKTIKLWNT---LAHC------KFTIVEDGHSDWVSCVRFSPNHQNPII 166
R I S+S DKT+KLW C K + D S V+F+P H +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS-VKFAPAHLGLKL 127
Query: 167 VSAGWDRMVKVWN 179
G D ++++++
Sbjct: 128 ACLGNDGILRLYD 140
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED----HTKDVLSVAFSVD 117
GH + D+V G + + S D+ ++++ L + D H ++++ ++
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 118 N--RQIVSSSRDKTIKLWNT---LAHC------KFTIVEDGHSDWVSCVRFSPNHQNPII 166
R I S+S DKT+KLW C K + D S V+F+P H +
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS-VKFAPAHLGLKL 125
Query: 167 VSAGWDRMVKVWN 179
G D ++++++
Sbjct: 126 ACLGNDGILRLYD 138
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 108/286 (37%), Gaps = 58/286 (20%)
Query: 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK----RLKGHSHFISDIVLSS 74
T +A +P P T+ S+ +++W N+G+ K + G I+ + +
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLW-------NFGIKDKPTFIKGIGAGGSITGLKFNP 174
Query: 75 -DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-----SVDNRQIVSSSRDK 128
+ N + S + T RL D G R F + D +++ F S +R +V+
Sbjct: 175 LNTNQFYASSMEGTTRLQDF-KGNILRVFA--SSDTINIWFCSLDVSASSRMVVTGDNVG 231
Query: 129 TI--------KLWNTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+ +LWN H K + + DW + +A D+ VK+W
Sbjct: 232 NVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-------------FLATASVDQTVKIW 278
Query: 179 NLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
+L + K + H +N SPDG+ + D +++ D
Sbjct: 279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWD 329
Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLIL---YPINHGKMETPF 278
L P+R FQ + + + NLI+ YP + K TP+
Sbjct: 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 375
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 108/286 (37%), Gaps = 58/286 (20%)
Query: 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK----RLKGHSHFISDIVLSS 74
T +A +P P T+ S+ +++W N+G+ K + G I+ + +
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLW-------NFGIKDKPTFIKGIGAGGSITGLKFNP 175
Query: 75 -DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-----SVDNRQIVSSSRDK 128
+ N + S + T RL D G R F + D +++ F S +R +V+
Sbjct: 176 LNTNQFYASSMEGTTRLQDF-KGNILRVFA--SSDTINIWFCSLDVSASSRMVVTGDNVG 232
Query: 129 TI--------KLWNTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+ +LWN H K + + DW + +A D+ VK+W
Sbjct: 233 NVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-------------FLATASVDQTVKIW 279
Query: 179 NLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
+L + K + H +N SPDG+ + D +++ D
Sbjct: 280 DLRQVRGKASFLYSLPHRHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWD 330
Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLIL---YPINHGKMETPF 278
L P+R FQ + + + NLI+ YP + K TP+
Sbjct: 331 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 376
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED----HTKDVLSVAFSVD 117
GH + D+V G + + S D+ ++++ L + D H ++++ ++
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 118 N--RQIVSSSRDKTIKLWNT---LAHC------KFTIVEDGHSDWVSCVRFSPNHQNPII 166
R I S+S DKT+KLW C K + D S V+F+P H +
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS-VKFAPAHLGLKL 127
Query: 167 VSAGWDRMVKVWN 179
G D ++++++
Sbjct: 128 ACLGNDGILRLYD 140
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 108/286 (37%), Gaps = 58/286 (20%)
Query: 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK----RLKGHSHFISDIVLSS 74
T +A +P P T+ S+ +++W N+G+ K + G I+ + +
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLW-------NFGIKDKPTFIKGIGAGGSITGLKFNP 174
Query: 75 -DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-----SVDNRQIVSSSRDK 128
+ N + S + T RL D G R F + D +++ F S +R +V+
Sbjct: 175 LNTNQFYASSMEGTTRLQDF-KGNILRVFA--SSDTINIWFCSLDVSASSRMVVTGDNVG 231
Query: 129 TI--------KLWNTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
+ +LWN H K + + DW + +A D+ VK+W
Sbjct: 232 NVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-------------FLATASVDQTVKIW 278
Query: 179 NLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
+L + K + H +N SPDG+ + D +++ D
Sbjct: 279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWD 329
Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLIL---YPINHGKMETPF 278
L P+R FQ + + + NLI+ YP + K TP+
Sbjct: 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 375
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84
D T++ W + +DT Y +PQ + G IS L + G + G W
Sbjct: 182 DTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQF--DGKW 226
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84
D T++ W + +DT Y +PQ + G IS L + G + G W
Sbjct: 182 DTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQF--DGKW 226
>pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
pdb|4GOP|Z Chain Z, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
pdb|4GNX|C Chain C, Structure Of
pdb|4GNX|Z Chain Z, Structure Of
Length = 444
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 44 WKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 103
W+ + D +Y P+ R + +S V + G LSG + +L ++AG+ + E
Sbjct: 328 WRCEKCDRSYATPEYR-----YILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLRE 382
Query: 104 DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC 154
+ + + NR + + R K + +N A ++TI D+
Sbjct: 383 ESESEFSAALHRAANRMYMFNCRAK-MDTFNDTARVRYTISRAAPVDFAKA 432
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 123/316 (38%), Gaps = 50/316 (15%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
T++GHN +T + NP ++S S D + W + + HS+ I +
Sbjct: 334 TISGHNKGITALTVNP-----LISGSYDGRIXEWSSSSXHQD----------HSNLIVSL 378
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK-T 129
S Y+ S SWD TL++ G T F K + S++ D T
Sbjct: 379 DNSKAQEYS-SISWDDTLKV----NGITKHEFGSQPK-------------VASANNDGFT 420
Query: 130 IKLWNTLAHCKFTIVEDGHSDWVSCVRF-SPN-----HQNPIIVSAGWDRMVKVWNLTNC 183
L N I++ D + VR SP QN + V ++V+ L++
Sbjct: 421 AVLTN---DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477
Query: 184 KLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN--DGKHLHTLVHNDIITAL 240
++ + + + +++SP + A+G +L+DL + K I A+
Sbjct: 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAI 537
Query: 241 CFSPNR---SFQKIKLDISRTLQ-KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
+ P + ++I+ D+ T +N+ +Y + + +D ++
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPST 597
Query: 297 IVSSSRDKTIKLWNTL 312
+VSS D IK WN +
Sbjct: 598 LVSSGADACIKRWNVV 613
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV---DNRQIVSSSRDKTIKLWNTLAHCKF 141
D T+R+WD+ K +++ + + + V N +I+S S D T+ + L H +
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE-LGHDEV 331
Query: 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
GH+ ++ + +P ++S +D + W
Sbjct: 332 LKTISGHNKGITALTVNP------LISGSYDGRIXEW 362
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-------QIVSSSRDKTI 130
Y +G + L +W+L A + K++++ + +IV+ SRD T+
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 131 KLW------NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM-VKVWNLTNC 183
K+W + +A+ + E+ W + N Q +V AG+D +K+++L N
Sbjct: 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNM 200
Query: 184 KLK 186
L+
Sbjct: 201 ALR 203
>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 426
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLN 197
P+ S+GWD + + + LK+ H GYLN
Sbjct: 96 PVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLN 129
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 124/316 (39%), Gaps = 50/316 (15%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
T++GHN +T + NP ++S S D ++ W + + HS+ I +
Sbjct: 334 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSS----------SMHQDHSNLIVSL 378
Query: 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK-T 129
S Y+ S SWD TL++ G T F K + S++ D T
Sbjct: 379 DNSKAQEYS-SISWDDTLKV----NGITKHEFGSQPK-------------VASANNDGFT 420
Query: 130 IKLWNTLAHCKFTIVEDGHSDWVSCVRF-SPN-----HQNPIIVSAGWDRMVKVWNLTNC 183
L N I++ D + VR SP QN + V ++V+ L++
Sbjct: 421 AVLTN---DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 477
Query: 184 KLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN--DGKHLHTLVHNDIITAL 240
++ + + + +++SP + A+G +L+DL + K I A+
Sbjct: 478 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 537
Query: 241 CFSPNR---SFQKIKLDISRTLQ-KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
+ P + ++I+ D+ T +N+ +Y + + +D ++
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 597
Query: 297 IVSSSRDKTIKLWNTL 312
+VSS D IK WN +
Sbjct: 598 LVSSGADACIKRWNVV 613
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV---DNRQIVSSSRDKTIKLWNTLAHCKF 141
D T+R+WD+ K +++ + + + V N +I+S S D T+ + L H +
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE-LGHDEV 331
Query: 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
GH+ ++ + +P ++S +D + W+
Sbjct: 332 LKTISGHNKGITALTVNP------LISGSYDGRIMEWS 363
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
++ E HS WV + F N + SAGWD ++ W++
Sbjct: 284 SLGEFAHSSWVMSLSF--NDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
++ E HS WV + F N + SAGWD ++ W++
Sbjct: 294 SLGEFAHSSWVMSLSF--NDSGETLCSAGWDGKLRFWDV 330
>pdb|3ZUL|A Chain A, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|B Chain B, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|C Chain C, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|D Chain D, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|E Chain E, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|F Chain F, Padron On (Fluorescent) Icis Intermediate State
Length = 221
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 38 DNTLIIWKLTRDDTNYG----VPQKR-----LKGHSHFISDIVLSSDGNYALS 81
D I+++ D N+ V QKR L ++ D VL SDGNYALS
Sbjct: 107 DGDCYIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALS 159
>pdb|3ZUF|A Chain A, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|B Chain B, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|C Chain C, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|D Chain D, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|E Chain E, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|F Chain F, Padron Off (Non-Fluorescent) Btrans
Length = 215
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 38 DNTLIIWKLTRDDTNYG----VPQKR-----LKGHSHFISDIVLSSDGNYALS 81
D I+++ D N+ V QKR L ++ D VL SDGNYALS
Sbjct: 107 DGDCYIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALS 159
>pdb|3ZUJ|A Chain A, Padron On (Fluorescent) Abcis
pdb|3ZUJ|B Chain B, Padron On (Fluorescent) Abcis
pdb|3ZUJ|C Chain C, Padron On (Fluorescent) Abcis
pdb|3ZUJ|D Chain D, Padron On (Fluorescent) Abcis
pdb|3ZUJ|E Chain E, Padron On (Fluorescent) Abcis
pdb|3ZUJ|F Chain F, Padron On (Fluorescent) Abcis
Length = 214
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 38 DNTLIIWKLTRDDTNYG----VPQKR-----LKGHSHFISDIVLSSDGNYALS 81
D I+++ D N+ V QKR L ++ D VL SDGNYALS
Sbjct: 107 DGDCYIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALS 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,997,458
Number of Sequences: 62578
Number of extensions: 488667
Number of successful extensions: 2898
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 523
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)