Query psy6984
Match_columns 380
No_of_seqs 251 out of 2288
Neff 11.3
Searched_HMMs 29240
Date Fri Aug 16 23:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aow_A Guanine nucleotide-bind 100.0 3.1E-50 1.1E-54 353.6 44.9 317 2-378 24-340 (340)
2 3frx_A Guanine nucleotide-bind 100.0 2.6E-50 9E-55 351.0 43.9 312 2-376 3-318 (319)
3 1nr0_A Actin interacting prote 100.0 9.6E-49 3.3E-53 370.4 46.5 346 5-376 48-568 (611)
4 1nr0_A Actin interacting prote 100.0 1.7E-48 5.7E-53 368.8 44.2 334 9-374 140-610 (611)
5 3ow8_A WD repeat-containing pr 100.0 1.9E-48 6.7E-53 339.2 41.0 296 6-374 22-320 (321)
6 1vyh_C Platelet-activating fac 100.0 6E-48 2.1E-52 347.6 41.1 289 9-373 101-409 (410)
7 2xzm_R RACK1; ribosome, transl 100.0 9.6E-47 3.3E-51 332.0 44.7 316 5-377 10-342 (343)
8 1got_B GT-beta; complex (GTP-b 100.0 4.7E-47 1.6E-51 333.5 42.2 292 6-372 45-340 (340)
9 2pbi_B Guanine nucleotide-bind 100.0 1.3E-46 4.5E-51 332.2 42.9 295 6-372 54-354 (354)
10 3dm0_A Maltose-binding peripla 100.0 2E-46 6.9E-51 360.0 42.5 319 6-374 372-692 (694)
11 2ynn_A Coatomer subunit beta'; 100.0 6.9E-46 2.4E-50 320.9 41.1 294 6-374 3-301 (304)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-46 8.9E-51 329.4 37.6 326 4-377 3-337 (345)
13 3iz6_a 40S ribosomal protein R 100.0 6.2E-47 2.1E-51 337.8 34.0 311 2-375 52-375 (380)
14 2ymu_A WD-40 repeat protein; u 100.0 8E-45 2.7E-49 341.9 46.7 324 7-372 253-577 (577)
15 2hes_X YDR267CP; beta-propelle 100.0 2.8E-44 9.6E-49 314.4 40.2 306 5-375 3-328 (330)
16 4gqb_B Methylosome protein 50; 100.0 1.4E-44 4.8E-49 317.2 37.5 290 13-375 27-331 (344)
17 2ymu_A WD-40 repeat protein; u 100.0 2.1E-43 7.4E-48 332.2 46.9 325 7-373 212-537 (577)
18 4ery_A WD repeat-containing pr 100.0 4.7E-43 1.6E-47 304.4 44.5 297 5-374 12-311 (312)
19 4g56_B MGC81050 protein; prote 100.0 3E-44 1E-48 317.5 35.7 291 12-375 38-343 (357)
20 1erj_A Transcriptional repress 100.0 5.8E-43 2E-47 313.5 42.6 308 8-376 57-390 (393)
21 1r5m_A SIR4-interacting protei 100.0 2E-43 6.9E-48 319.4 38.7 347 13-374 42-424 (425)
22 1gxr_A ESG1, transducin-like e 100.0 4.2E-42 1.4E-46 301.2 40.4 323 15-374 8-336 (337)
23 2pm9_A Protein WEB1, protein t 100.0 2.9E-44 9.8E-49 324.5 25.1 351 15-375 11-414 (416)
24 1sq9_A Antiviral protein SKI8; 100.0 6.4E-42 2.2E-46 307.2 37.8 336 1-376 1-396 (397)
25 3ei3_B DNA damage-binding prot 100.0 1.5E-41 5.3E-46 303.4 37.0 313 4-375 61-382 (383)
26 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-41 6E-46 332.2 40.6 346 11-376 12-520 (902)
27 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-41 2.1E-45 341.7 44.3 358 9-375 608-1116(1249)
28 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-40 4E-45 325.9 42.4 354 6-374 3-385 (814)
29 3vl1_A 26S proteasome regulato 100.0 6.8E-41 2.3E-45 302.8 37.7 330 19-375 59-419 (420)
30 1vyh_C Platelet-activating fac 100.0 2.5E-41 8.5E-46 304.5 34.4 254 4-311 138-409 (410)
31 3ow8_A WD repeat-containing pr 100.0 5.2E-41 1.8E-45 292.3 35.2 251 5-311 69-319 (321)
32 3gre_A Serine/threonine-protei 100.0 6.4E-42 2.2E-46 311.3 30.6 340 5-372 51-437 (437)
33 4gqb_B Methylosome protein 50; 100.0 4.8E-41 1.6E-45 294.8 34.8 247 14-312 80-330 (344)
34 2ynn_A Coatomer subunit beta'; 100.0 1.3E-40 4.5E-45 287.8 34.9 248 58-374 7-258 (304)
35 3sfz_A APAF-1, apoptotic pepti 100.0 8.8E-41 3E-45 340.6 39.1 338 4-376 645-1159(1249)
36 3zwl_B Eukaryotic translation 100.0 2E-39 6.8E-44 287.7 42.3 298 8-314 24-347 (369)
37 1pgu_A Actin interacting prote 100.0 1.1E-39 3.9E-44 308.9 42.9 333 7-375 151-614 (615)
38 4e54_B DNA damage-binding prot 100.0 6.9E-42 2.3E-46 310.7 26.6 312 8-376 111-431 (435)
39 3k26_A Polycomb protein EED; W 100.0 1.4E-40 4.9E-45 294.9 34.0 313 11-374 13-365 (366)
40 3i2n_A WD repeat-containing pr 100.0 1E-40 3.5E-45 294.8 31.7 319 8-377 10-355 (357)
41 1got_B GT-beta; complex (GTP-b 100.0 3E-39 1E-43 283.8 38.5 249 58-374 49-300 (340)
42 1pgu_A Actin interacting prote 100.0 2.4E-39 8.2E-44 306.7 40.4 353 7-374 54-518 (615)
43 1gxr_A ESG1, transducin-like e 100.0 2.1E-38 7.2E-43 277.6 43.1 288 11-311 46-335 (337)
44 3v7d_B Cell division control p 100.0 5.2E-38 1.8E-42 287.8 47.4 325 7-374 112-462 (464)
45 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-39 4.5E-44 318.9 38.5 342 7-373 90-659 (902)
46 1k8k_C P40, ARP2/3 complex 41 100.0 6E-39 2.1E-43 285.2 39.2 310 12-375 4-361 (372)
47 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-38 8.9E-43 288.2 43.9 324 8-375 110-442 (445)
48 2pm7_B Protein transport prote 100.0 1.7E-39 5.8E-44 279.9 33.6 258 9-312 2-284 (297)
49 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-38 4.2E-43 276.3 39.0 287 5-376 7-297 (313)
50 3dwl_C Actin-related protein 2 100.0 8.8E-41 3E-45 297.8 25.2 309 14-373 9-377 (377)
51 4g56_B MGC81050 protein; prote 100.0 7.5E-40 2.6E-44 289.3 30.9 251 10-312 88-342 (357)
52 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-41 3.1E-45 307.3 25.2 329 15-375 132-517 (524)
53 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-38 4.8E-43 311.2 41.6 359 4-374 43-459 (814)
54 2pm7_B Protein transport prote 100.0 7E-39 2.4E-43 276.0 33.9 257 60-374 5-284 (297)
55 3zwl_B Eukaryotic translation 100.0 1.5E-37 5.3E-42 275.5 42.1 287 58-375 26-346 (369)
56 4aez_A CDC20, WD repeat-contai 100.0 1.7E-38 5.9E-43 285.4 36.1 292 8-376 83-381 (401)
57 4a11_B DNA excision repair pro 100.0 2E-38 6.7E-43 285.2 35.5 301 6-314 33-366 (408)
58 2hes_X YDR267CP; beta-propelle 100.0 3.6E-38 1.2E-42 275.7 35.8 259 7-311 47-326 (330)
59 2pbi_B Guanine nucleotide-bind 100.0 8.6E-38 2.9E-42 275.9 36.7 254 6-310 96-354 (354)
60 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.3E-38 1.1E-42 277.7 33.5 263 58-375 9-283 (345)
61 3dw8_B Serine/threonine-protei 100.0 2.2E-38 7.6E-43 288.6 33.4 320 15-373 27-444 (447)
62 3frx_A Guanine nucleotide-bind 100.0 2.3E-37 7.9E-42 269.3 37.1 255 7-312 56-316 (319)
63 3bg1_A Protein SEC13 homolog; 100.0 2.3E-39 7.7E-44 281.6 23.9 257 8-311 5-291 (316)
64 3iz6_a 40S ribosomal protein R 100.0 1.5E-38 5E-43 283.6 29.2 265 4-314 96-376 (380)
65 3bg1_A Protein SEC13 homolog; 100.0 1.6E-38 5.3E-43 276.3 25.8 256 59-374 8-292 (316)
66 4gga_A P55CDC, cell division c 100.0 9.2E-37 3.1E-41 275.8 38.3 281 19-313 108-395 (420)
67 1erj_A Transcriptional repress 100.0 5.4E-37 1.8E-41 274.8 35.6 243 18-311 125-387 (393)
68 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-38 3.6E-43 293.6 24.8 290 9-312 200-516 (524)
69 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-38 3.2E-42 274.5 29.6 304 8-315 3-339 (351)
70 4ery_A WD repeat-containing pr 100.0 1.8E-36 6.1E-41 263.0 37.2 252 5-311 54-310 (312)
71 2pm9_A Protein WEB1, protein t 100.0 3.5E-38 1.2E-42 284.6 27.2 291 14-312 65-413 (416)
72 4h5i_A Guanine nucleotide-exch 100.0 2.2E-37 7.5E-42 274.2 31.1 285 65-374 15-342 (365)
73 2xzm_R RACK1; ribosome, transl 100.0 2E-36 7E-41 266.1 35.9 260 7-312 67-339 (343)
74 1yfq_A Cell cycle arrest prote 100.0 6.1E-37 2.1E-41 269.1 32.2 289 8-367 3-315 (342)
75 1r5m_A SIR4-interacting protei 100.0 2.9E-36 1E-40 272.4 36.0 279 15-311 107-423 (425)
76 4ggc_A P55CDC, cell division c 100.0 1.9E-35 6.5E-40 256.9 39.5 280 19-312 28-314 (318)
77 3jrp_A Fusion protein of prote 100.0 1.1E-36 3.7E-41 271.1 30.0 261 7-313 2-287 (379)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-36 4.7E-41 273.2 30.5 290 18-375 36-342 (402)
79 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-35 4.9E-40 269.3 36.5 286 11-376 128-415 (435)
80 3jrp_A Fusion protein of prote 100.0 5.7E-36 1.9E-40 266.5 33.3 260 58-375 5-287 (379)
81 3v7d_B Cell division control p 100.0 7.9E-35 2.7E-39 266.6 40.2 282 58-375 115-421 (464)
82 4gga_A P55CDC, cell division c 100.0 1.3E-34 4.6E-39 261.6 40.8 278 66-374 107-394 (420)
83 3vl1_A 26S proteasome regulato 100.0 3.5E-35 1.2E-39 265.4 36.9 288 11-312 93-418 (420)
84 4a11_B DNA excision repair pro 100.0 2.1E-35 7.2E-40 265.5 33.9 307 37-376 21-366 (408)
85 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-35 1.3E-39 257.7 33.7 274 58-376 5-338 (351)
86 4ggc_A P55CDC, cell division c 100.0 5.4E-34 1.8E-38 247.7 40.4 278 66-374 27-314 (318)
87 4h5i_A Guanine nucleotide-exch 100.0 7.6E-36 2.6E-40 264.3 27.8 252 10-313 67-343 (365)
88 3gre_A Serine/threonine-protei 100.0 5E-36 1.7E-40 272.4 25.2 319 5-376 6-360 (437)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-34 2.5E-38 258.8 38.0 283 4-313 147-442 (445)
90 3mmy_A MRNA export factor; mRN 100.0 2.3E-34 7.7E-39 255.0 33.5 289 57-372 32-343 (368)
91 3dm0_A Maltose-binding peripla 100.0 2.7E-34 9.1E-39 275.8 35.6 265 8-311 422-691 (694)
92 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-35 4.8E-40 267.0 24.8 308 14-364 13-350 (588)
93 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-34 2E-38 253.1 32.8 264 60-375 4-274 (372)
94 4aez_A CDC20, WD repeat-contai 100.0 1.4E-33 4.7E-38 253.5 34.9 252 8-315 125-382 (401)
95 3dwl_C Actin-related protein 2 100.0 5.7E-35 1.9E-39 260.3 25.2 210 7-223 46-280 (377)
96 1sq9_A Antiviral protein SKI8; 100.0 2.7E-34 9.1E-39 257.6 29.5 275 8-312 54-394 (397)
97 3mmy_A MRNA export factor; mRN 100.0 1.1E-33 3.6E-38 250.7 31.6 290 6-311 29-344 (368)
98 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-33 5E-38 248.9 31.6 303 8-377 11-338 (355)
99 3ei3_B DNA damage-binding prot 100.0 1E-33 3.6E-38 252.7 30.9 245 12-312 114-381 (383)
100 3k26_A Polycomb protein EED; W 100.0 9.2E-34 3.1E-38 251.0 30.3 245 15-311 68-364 (366)
101 3i2n_A WD repeat-containing pr 100.0 4E-34 1.4E-38 252.6 27.7 265 14-312 63-352 (357)
102 3odt_A Protein DOA1; ubiquitin 100.0 9.3E-33 3.2E-37 239.3 35.8 250 4-314 47-297 (313)
103 3jro_A Fusion protein of prote 100.0 1.7E-34 5.7E-39 279.0 26.6 259 9-313 2-285 (753)
104 2xyi_A Probable histone-bindin 100.0 1.6E-33 5.4E-38 255.3 31.3 262 58-374 122-409 (430)
105 4aow_A Guanine nucleotide-bind 100.0 2.4E-32 8.2E-37 239.6 36.9 259 7-314 77-338 (340)
106 2xyi_A Probable histone-bindin 100.0 1.8E-33 6.1E-38 255.0 30.1 269 10-312 122-409 (430)
107 3bws_A Protein LP49; two-domai 100.0 2.1E-32 7E-37 248.3 36.7 280 65-374 123-431 (433)
108 3jro_A Fusion protein of prote 100.0 5.6E-34 1.9E-38 275.3 26.9 259 59-375 4-285 (753)
109 3dw8_B Serine/threonine-protei 100.0 1.9E-33 6.5E-38 256.0 28.4 269 62-374 26-372 (447)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-33 1.8E-37 253.5 31.0 316 17-375 5-391 (450)
111 4gq1_A NUP37; propeller, trans 100.0 1.2E-33 4.2E-38 252.8 25.4 252 69-373 94-387 (393)
112 4e54_B DNA damage-binding prot 100.0 9.9E-34 3.4E-38 257.1 23.4 254 8-314 156-431 (435)
113 3lrv_A PRE-mRNA-splicing facto 100.0 4.6E-33 1.6E-37 244.7 25.4 263 29-372 48-330 (343)
114 1yfq_A Cell cycle arrest prote 100.0 1.8E-32 6.2E-37 240.6 28.5 257 60-374 7-281 (342)
115 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-31 4.6E-36 240.6 33.1 256 9-274 74-345 (402)
116 3bws_A Protein LP49; two-domai 100.0 1.4E-30 4.8E-35 236.2 37.5 298 6-311 113-430 (433)
117 1l0q_A Surface layer protein; 100.0 1.3E-29 4.4E-34 226.8 41.6 277 30-321 3-283 (391)
118 4gq1_A NUP37; propeller, trans 100.0 9.4E-33 3.2E-37 247.1 20.8 233 29-311 101-387 (393)
119 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-31 1.2E-35 240.5 30.9 252 3-313 160-414 (435)
120 2j04_A TAU60, YPL007P, hypothe 100.0 1E-31 3.6E-36 242.0 22.8 247 14-302 83-350 (588)
121 2w18_A PALB2, fancn, partner a 100.0 2.5E-30 8.6E-35 219.2 30.0 302 2-373 21-355 (356)
122 1l0q_A Surface layer protein; 100.0 9.7E-29 3.3E-33 221.0 37.6 266 77-374 3-274 (391)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-30 4.1E-35 229.3 23.2 234 72-375 44-292 (343)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.6E-29 1.2E-33 228.1 32.3 227 11-246 97-366 (450)
125 2w18_A PALB2, fancn, partner a 100.0 8E-29 2.7E-33 210.0 25.8 177 38-222 156-355 (356)
126 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-28 4.3E-33 217.3 28.2 252 90-376 3-272 (355)
127 1nir_A Nitrite reductase; hemo 100.0 4.5E-27 1.6E-31 217.9 35.1 325 24-375 145-514 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.1E-28 2.4E-32 216.8 28.1 308 16-357 62-410 (415)
129 2ecf_A Dipeptidyl peptidase IV 100.0 1.8E-25 6.3E-30 216.2 34.6 321 16-373 36-457 (741)
130 1k32_A Tricorn protease; prote 99.9 2.5E-25 8.5E-30 222.6 33.2 322 10-374 46-460 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.5E-29 196.2 28.8 279 65-374 63-386 (415)
132 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-24 4.1E-29 209.9 28.4 320 17-362 17-427 (723)
133 1nir_A Nitrite reductase; hemo 99.9 6.6E-24 2.2E-28 196.7 31.5 302 3-315 166-516 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3E-24 1E-28 207.7 30.3 284 64-375 36-413 (741)
135 3u4y_A Uncharacterized protein 99.9 2.5E-23 8.4E-28 181.6 33.2 277 23-313 4-304 (331)
136 1k32_A Tricorn protease; prote 99.9 1.8E-23 6.2E-28 209.2 33.9 286 10-312 197-501 (1045)
137 1ri6_A Putative isomerase YBHE 99.9 4.6E-23 1.6E-27 180.5 32.2 280 31-374 7-307 (343)
138 3vgz_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 175.8 37.5 271 65-365 41-334 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-23 6.3E-28 201.1 31.0 319 19-374 28-434 (706)
140 1pby_B Quinohemoprotein amine 99.9 1.4E-22 4.9E-27 177.0 29.8 270 77-374 2-309 (337)
141 3u4y_A Uncharacterized protein 99.9 2.4E-22 8.3E-27 175.3 30.9 283 71-375 4-304 (331)
142 1xfd_A DIP, dipeptidyl aminope 99.9 6.6E-24 2.3E-28 204.8 22.0 287 67-376 19-394 (723)
143 2ojh_A Uncharacterized protein 99.9 3.7E-23 1.3E-27 177.1 23.7 257 81-366 17-293 (297)
144 2ojh_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 176.7 22.4 259 34-304 17-293 (297)
145 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-22 1.1E-26 192.4 30.0 284 17-315 82-437 (706)
146 3hfq_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 171.8 30.6 278 37-375 14-317 (347)
147 3o4h_A Acylamino-acid-releasin 99.9 1E-22 3.5E-27 191.6 23.8 271 64-373 21-311 (582)
148 3vgz_A Uncharacterized protein 99.9 1.5E-20 5.2E-25 165.2 33.2 272 16-304 40-335 (353)
149 1jmx_B Amine dehydrogenase; ox 99.9 5E-21 1.7E-25 168.0 28.8 271 70-374 5-324 (349)
150 1pby_B Quinohemoprotein amine 99.9 4.9E-21 1.7E-25 167.1 28.3 266 30-317 2-314 (337)
151 1z68_A Fibroblast activation p 99.9 3.8E-22 1.3E-26 192.4 23.1 323 21-374 20-442 (719)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 6.7E-21 2.3E-25 171.9 29.7 243 66-311 38-331 (434)
153 3scy_A Hypothetical bacterial 99.9 3.9E-20 1.3E-24 163.4 32.5 279 31-375 15-337 (361)
154 1ri6_A Putative isomerase YBHE 99.9 6.3E-20 2.2E-24 160.5 30.1 271 14-294 35-334 (343)
155 3pe7_A Oligogalacturonate lyas 99.9 6.7E-20 2.3E-24 163.4 29.3 310 6-377 20-384 (388)
156 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-21 6.5E-26 175.5 19.0 204 16-225 36-279 (434)
157 3hfq_A Uncharacterized protein 99.9 2E-19 6.9E-24 157.9 27.4 249 13-311 36-315 (347)
158 4a5s_A Dipeptidyl peptidase 4 99.9 1E-18 3.5E-23 168.7 33.3 328 16-373 16-447 (740)
159 3o4h_A Acylamino-acid-releasin 99.9 1.7E-19 5.9E-24 169.6 25.8 267 16-312 21-314 (582)
160 1jmx_B Amine dehydrogenase; ox 99.9 5E-19 1.7E-23 155.2 26.4 265 22-316 5-328 (349)
161 3scy_A Hypothetical bacterial 99.9 7.7E-18 2.6E-22 148.6 33.8 245 15-311 48-335 (361)
162 1z68_A Fibroblast activation p 99.8 1.2E-19 4.2E-24 174.9 23.9 279 69-375 20-391 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.7E-18 9.3E-23 151.8 26.8 280 31-313 4-341 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.2E-18 2.5E-22 149.0 27.3 274 78-374 4-340 (365)
165 3azo_A Aminopeptidase; POP fam 99.8 7.9E-18 2.7E-22 160.7 26.7 251 11-311 18-321 (662)
166 3c5m_A Oligogalacturonate lyas 99.8 2.7E-18 9.4E-23 153.3 21.1 213 4-227 18-276 (396)
167 1q7f_A NHL, brain tumor CG1071 99.8 4.5E-16 1.5E-20 132.6 33.0 244 61-375 26-280 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.8 2.3E-16 7.8E-21 137.3 31.6 244 65-311 24-320 (329)
169 1q7f_A NHL, brain tumor CG1071 99.8 4.3E-16 1.5E-20 132.7 32.5 246 14-312 27-279 (286)
170 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-17 7.7E-22 159.4 26.4 236 67-311 19-351 (740)
171 2oiz_A Aromatic amine dehydrog 99.8 7.7E-16 2.6E-20 135.5 30.1 263 37-314 29-335 (361)
172 2dg1_A DRP35, lactonase; beta 99.8 1E-15 3.4E-20 133.5 30.5 293 16-375 5-314 (333)
173 3pe7_A Oligogalacturonate lyas 99.8 2E-16 6.8E-21 140.9 25.4 266 90-374 14-328 (388)
174 3fvz_A Peptidyl-glycine alpha- 99.7 3.5E-15 1.2E-19 129.8 29.6 244 106-375 23-322 (329)
175 3c5m_A Oligogalacturonate lyas 99.7 1.4E-16 4.9E-21 142.1 18.7 260 65-374 36-328 (396)
176 2gop_A Trilobed protease; beta 99.7 1.6E-14 5.6E-19 126.4 30.5 264 65-374 15-330 (347)
177 1qks_A Cytochrome CD1 nitrite 99.7 1.3E-13 4.4E-18 127.7 37.6 327 30-374 168-537 (567)
178 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.2E-20 143.2 25.4 173 63-240 128-341 (662)
179 2oiz_A Aromatic amine dehydrog 99.7 1.1E-14 3.8E-19 128.1 25.7 277 3-295 38-360 (361)
180 2z2n_A Virginiamycin B lyase; 99.7 2E-12 6.7E-17 110.5 38.4 278 11-310 9-292 (299)
181 2z2n_A Virginiamycin B lyase; 99.7 5.2E-12 1.8E-16 107.8 39.2 278 63-375 13-295 (299)
182 3dsm_A Uncharacterized protein 99.7 9.3E-14 3.2E-18 120.6 27.7 262 37-312 15-301 (328)
183 1rwi_B Serine/threonine-protei 99.7 1.1E-13 3.7E-18 116.7 25.3 237 66-312 25-263 (270)
184 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.3E-18 131.0 29.9 246 62-315 122-416 (710)
185 3e5z_A Putative gluconolactona 99.6 1.3E-13 4.3E-18 118.0 25.2 229 60-304 23-278 (296)
186 2gop_A Trilobed protease; beta 99.6 1.9E-13 6.6E-18 119.6 26.2 256 17-311 15-329 (347)
187 2dg1_A DRP35, lactonase; beta 99.6 2.5E-12 8.4E-17 111.9 32.5 230 7-247 35-292 (333)
188 2bkl_A Prolyl endopeptidase; m 99.6 5.6E-14 1.9E-18 134.7 23.5 274 73-374 76-396 (695)
189 2qc5_A Streptogramin B lactona 99.6 4.7E-11 1.6E-15 101.9 37.7 274 64-373 19-298 (300)
190 3e5z_A Putative gluconolactona 99.6 1.9E-12 6.5E-17 110.7 27.9 221 11-247 22-269 (296)
191 3no2_A Uncharacterized protein 99.6 1.9E-12 6.4E-17 109.3 27.3 214 75-301 4-231 (276)
192 2qc5_A Streptogramin B lactona 99.6 6.3E-11 2.2E-15 101.1 37.2 278 12-310 15-297 (300)
193 1qks_A Cytochrome CD1 nitrite 99.6 1.4E-11 4.7E-16 114.1 34.9 301 3-313 184-538 (567)
194 2xdw_A Prolyl endopeptidase; a 99.6 9.2E-13 3.1E-17 126.6 28.1 248 14-273 122-416 (710)
195 2bkl_A Prolyl endopeptidase; m 99.6 1E-12 3.4E-17 126.0 26.2 247 14-274 118-400 (695)
196 2mad_H Methylamine dehydrogena 99.6 5.9E-11 2E-15 104.5 34.5 273 29-375 32-350 (373)
197 3no2_A Uncharacterized protein 99.5 5.8E-12 2E-16 106.2 25.8 191 29-232 5-203 (276)
198 1rwi_B Serine/threonine-protei 99.5 6.6E-12 2.3E-16 105.6 25.6 220 18-247 25-246 (270)
199 3dsm_A Uncharacterized protein 99.5 3.6E-12 1.2E-16 110.6 23.1 231 2-242 70-319 (328)
200 1yr2_A Prolyl oligopeptidase; 99.5 4.7E-12 1.6E-16 122.2 25.2 275 73-374 115-440 (741)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.7E-11 1.9E-15 102.2 28.3 206 13-226 14-258 (314)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.2E-10 4.1E-15 100.1 29.9 240 107-375 18-299 (314)
203 3g4e_A Regucalcin; six bladed 99.5 1.4E-10 4.8E-15 99.0 29.2 228 9-247 5-254 (297)
204 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-12 4E-17 114.6 16.1 176 18-210 39-230 (388)
205 1yr2_A Prolyl oligopeptidase; 99.5 4.2E-11 1.4E-15 115.6 28.6 243 62-315 160-443 (741)
206 2mad_H Methylamine dehydrogena 99.5 5.4E-10 1.9E-14 98.3 31.5 255 2-316 53-353 (373)
207 3sjl_D Methylamine dehydrogena 99.4 2E-10 6.9E-15 100.1 27.4 278 23-316 39-366 (386)
208 3hrp_A Uncharacterized protein 99.4 3.9E-10 1.3E-14 100.6 30.0 266 65-374 131-409 (409)
209 3sjl_D Methylamine dehydrogena 99.4 8.9E-11 3.1E-15 102.3 24.8 279 70-374 38-362 (386)
210 3g4e_A Regucalcin; six bladed 99.4 1.3E-09 4.6E-14 92.9 31.4 231 65-364 13-261 (297)
211 3hrp_A Uncharacterized protein 99.4 4.8E-10 1.6E-14 100.1 28.6 250 17-310 131-407 (409)
212 1xip_A Nucleoporin NUP159; bet 99.4 1.3E-11 4.3E-16 108.0 16.7 169 66-250 39-229 (388)
213 2qe8_A Uncharacterized protein 99.3 1.6E-10 5.5E-15 100.9 21.0 263 65-366 17-312 (343)
214 3c75_H MADH, methylamine dehyd 99.3 7.6E-10 2.6E-14 98.2 24.7 274 29-316 84-405 (426)
215 3iuj_A Prolyl endopeptidase; h 99.3 5.5E-10 1.9E-14 106.9 24.5 245 61-314 125-406 (693)
216 2ghs_A AGR_C_1268P; regucalcin 99.3 1.1E-08 3.8E-13 88.5 30.3 216 17-247 49-284 (326)
217 3dr2_A Exported gluconolactona 99.3 2.3E-09 7.7E-14 91.9 25.1 229 60-306 40-300 (305)
218 3c75_H MADH, methylamine dehyd 99.3 1.2E-09 4.2E-14 96.8 23.4 267 73-374 81-401 (426)
219 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.3E-08 2.5E-12 85.0 31.7 305 29-372 53-375 (376)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 3.4E-08 1.2E-12 85.4 28.8 220 67-302 51-291 (326)
221 3dr2_A Exported gluconolactona 99.2 6.9E-09 2.4E-13 88.9 23.5 220 12-247 40-289 (305)
222 2qe8_A Uncharacterized protein 99.2 1.3E-08 4.4E-13 88.7 25.5 234 6-247 9-303 (343)
223 3iuj_A Prolyl endopeptidase; h 99.1 8.2E-09 2.8E-13 98.8 22.9 242 14-273 126-407 (693)
224 2ece_A 462AA long hypothetical 99.1 2.6E-07 8.7E-12 81.3 28.9 236 116-363 93-399 (462)
225 1kb0_A Quinohemoprotein alcoho 99.1 1.2E-07 3.9E-12 90.2 28.8 283 29-318 77-512 (677)
226 1yiq_A Quinohemoprotein alcoho 99.1 1E-07 3.5E-12 90.7 28.4 284 29-318 70-510 (689)
227 2hz6_A Endoplasmic reticulum t 99.1 3.9E-11 1.3E-15 105.7 4.6 149 75-232 8-157 (369)
228 3hxj_A Pyrrolo-quinoline quino 99.1 7.3E-09 2.5E-13 89.6 18.6 318 4-376 7-325 (330)
229 2hz6_A Endoplasmic reticulum t 99.1 3.7E-11 1.2E-15 105.9 3.1 193 29-238 9-206 (369)
230 1mda_H Methylamine dehydrogena 99.1 1.3E-08 4.4E-13 88.8 19.0 264 31-316 34-349 (368)
231 1yiq_A Quinohemoprotein alcoho 99.0 1.9E-07 6.4E-12 89.0 26.6 155 76-232 70-292 (689)
232 1kb0_A Quinohemoprotein alcoho 99.0 5.5E-08 1.9E-12 92.4 22.6 151 76-232 77-300 (677)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.0 3.7E-06 1.3E-10 74.0 31.4 226 75-316 52-299 (376)
234 1npe_A Nidogen, entactin; glyc 98.9 5.1E-06 1.7E-10 69.4 29.5 220 17-245 36-261 (267)
235 1npe_A Nidogen, entactin; glyc 98.9 1.1E-05 3.6E-10 67.4 30.8 248 39-295 10-263 (267)
236 1mda_H Methylamine dehydrogena 98.9 1.4E-07 4.7E-12 82.3 17.1 232 2-243 52-365 (368)
237 3hxj_A Pyrrolo-quinoline quino 98.9 5.8E-07 2E-11 77.5 21.2 263 15-310 58-321 (330)
238 2ece_A 462AA long hypothetical 98.8 2E-06 6.9E-11 75.7 23.3 222 26-250 93-396 (462)
239 1fwx_A Nitrous oxide reductase 98.8 5.6E-06 1.9E-10 75.5 26.0 190 116-313 99-361 (595)
240 2iwa_A Glutamine cyclotransfer 98.8 2.5E-05 8.5E-10 64.4 27.5 158 66-232 22-189 (266)
241 4a2l_A BT_4663, two-component 98.7 0.00021 7.2E-09 69.5 40.2 323 16-373 214-569 (795)
242 1kv9_A Type II quinohemoprotei 98.7 3.8E-06 1.3E-10 79.7 23.6 152 76-233 66-288 (668)
243 2iwa_A Glutamine cyclotransfer 98.7 5.2E-05 1.8E-09 62.5 26.3 222 98-375 11-237 (266)
244 4a2l_A BT_4663, two-component 98.7 0.00035 1.2E-08 67.9 42.6 275 17-312 310-613 (795)
245 1kv9_A Type II quinohemoprotei 98.7 3.6E-05 1.2E-09 73.1 28.7 283 29-318 66-493 (668)
246 2fp8_A Strictosidine synthase; 98.6 0.00017 5.9E-09 61.8 29.3 238 67-311 21-311 (322)
247 2fp8_A Strictosidine synthase; 98.6 7.1E-05 2.4E-09 64.2 26.1 240 108-374 20-312 (322)
248 2p4o_A Hypothetical protein; p 98.6 0.00014 4.8E-09 61.9 27.6 226 4-243 20-263 (306)
249 3nol_A Glutamine cyclotransfer 98.6 5.8E-05 2E-09 61.6 23.6 174 65-247 43-237 (262)
250 2p4o_A Hypothetical protein; p 98.6 0.0002 6.9E-09 60.9 28.4 226 65-303 32-278 (306)
251 2ad6_A Methanol dehydrogenase 98.6 0.00014 4.9E-09 67.6 29.3 155 75-233 114-344 (571)
252 1w6s_A Methanol dehydrogenase 98.6 0.00016 5.5E-09 67.3 29.0 198 30-232 63-350 (599)
253 1fwx_A Nitrous oxide reductase 98.5 3.6E-06 1.2E-10 76.8 16.8 236 31-275 104-435 (595)
254 3nok_A Glutaminyl cyclase; bet 98.5 5.2E-05 1.8E-09 61.9 21.9 173 65-247 55-247 (268)
255 3nol_A Glutamine cyclotransfer 98.5 0.00017 5.8E-09 58.8 24.3 126 98-231 33-162 (262)
256 1k3i_A Galactose oxidase precu 98.5 1.6E-05 5.5E-10 75.5 21.3 158 69-228 190-382 (656)
257 3qqz_A Putative uncharacterize 98.5 0.00028 9.6E-09 57.8 24.9 205 10-222 20-251 (255)
258 2ad6_A Methanol dehydrogenase 98.4 9.1E-05 3.1E-09 68.9 24.1 151 76-232 62-289 (571)
259 3v9f_A Two-component system se 98.4 0.0017 5.9E-08 62.9 36.8 279 17-312 258-567 (781)
260 3v9f_A Two-component system se 98.4 0.0018 6.1E-08 62.8 38.2 320 17-373 211-566 (781)
261 3v64_C Agrin; beta propeller, 98.4 0.00052 1.8E-08 59.5 26.0 206 18-231 74-282 (349)
262 1w6s_A Methanol dehydrogenase 98.4 0.00037 1.3E-08 64.9 26.2 153 76-232 62-295 (599)
263 3nok_A Glutaminyl cyclase; bet 98.4 0.00035 1.2E-08 57.0 22.7 126 98-232 45-172 (268)
264 1flg_A Protein (quinoprotein e 98.3 0.0011 3.8E-08 61.7 28.4 161 29-190 117-363 (582)
265 3mbr_X Glutamine cyclotransfer 98.3 0.00086 2.9E-08 54.2 25.2 173 65-246 21-215 (243)
266 3v65_B Low-density lipoprotein 98.3 0.00057 1.9E-08 60.2 24.6 207 17-231 116-325 (386)
267 2xe4_A Oligopeptidase B; hydro 98.3 0.00022 7.5E-09 68.8 23.7 160 61-224 169-354 (751)
268 3mbr_X Glutamine cyclotransfer 98.2 0.0015 5E-08 52.8 26.3 127 98-232 11-141 (243)
269 3v64_C Agrin; beta propeller, 98.2 0.0024 8.4E-08 55.3 28.8 240 68-318 37-280 (349)
270 3sov_A LRP-6, low-density lipo 98.2 0.0023 7.9E-08 54.6 25.3 207 18-231 36-245 (318)
271 3v65_B Low-density lipoprotein 98.2 0.0029 9.8E-08 55.7 28.0 241 68-319 80-324 (386)
272 1ijq_A LDL receptor, low-densi 98.2 0.0026 8.9E-08 54.3 27.4 211 17-231 30-245 (316)
273 3tc9_A Hypothetical hydrolase; 98.1 0.0036 1.2E-07 55.9 26.8 154 66-223 138-300 (430)
274 1k3i_A Galactose oxidase precu 98.1 0.00045 1.5E-08 65.6 20.5 114 111-226 190-325 (656)
275 2xe4_A Oligopeptidase B; hydro 98.1 0.0015 5.2E-08 62.9 24.3 194 18-222 175-398 (751)
276 4hw6_A Hypothetical protein, I 98.1 0.0061 2.1E-07 54.5 26.7 154 66-223 140-303 (433)
277 3p5b_L Low density lipoprotein 98.0 0.0067 2.3E-07 53.6 30.2 213 16-232 111-328 (400)
278 4hw6_A Hypothetical protein, I 98.0 0.0059 2E-07 54.5 24.6 196 18-222 140-372 (433)
279 3tc9_A Hypothetical hydrolase; 97.9 0.0095 3.3E-07 53.2 25.4 154 18-181 138-300 (430)
280 1flg_A Protein (quinoprotein e 97.9 0.0057 2E-07 56.9 23.9 164 69-236 250-528 (582)
281 3sov_A LRP-6, low-density lipo 97.9 0.009 3.1E-07 50.9 27.4 186 31-224 7-197 (318)
282 3m0c_C LDL receptor, low-densi 97.9 0.022 7.5E-07 54.9 28.3 211 17-231 424-639 (791)
283 3qqz_A Putative uncharacterize 97.9 0.0073 2.5E-07 49.4 24.4 186 59-247 21-236 (255)
284 2xbg_A YCF48-like protein; pho 97.8 0.013 4.3E-07 50.2 33.2 271 16-310 35-319 (327)
285 2p9w_A MAL S 1 allergenic prot 97.8 0.0055 1.9E-07 51.8 20.0 159 63-223 11-214 (334)
286 3m0c_C LDL receptor, low-densi 97.7 0.036 1.2E-06 53.3 30.6 181 38-226 403-591 (791)
287 1ijq_A LDL receptor, low-densi 97.7 0.02 6.9E-07 48.7 31.4 223 86-318 10-243 (316)
288 3p5b_L Low density lipoprotein 97.7 0.027 9.1E-07 49.7 32.0 186 31-225 85-278 (400)
289 1n7d_A LDL receptor, low-densi 97.6 0.00052 1.8E-08 65.4 11.7 209 18-231 407-621 (699)
290 3amr_A 3-phytase; beta-propell 97.5 0.033 1.1E-06 47.6 23.7 145 75-223 39-209 (355)
291 2p9w_A MAL S 1 allergenic prot 97.5 0.036 1.2E-06 46.9 20.7 169 12-183 8-216 (334)
292 3kya_A Putative phosphatase; s 97.5 0.06 2.1E-06 48.5 28.1 153 67-222 141-339 (496)
293 1n7d_A LDL receptor, low-densi 97.4 0.002 6.8E-08 61.4 13.5 157 66-224 407-571 (699)
294 4a0p_A LRP6, LRP-6, low-densit 97.4 0.099 3.4E-06 49.0 29.5 223 84-315 13-239 (628)
295 2ism_A Putative oxidoreductase 97.2 0.09 3.1E-06 45.4 24.7 140 66-211 32-220 (352)
296 3s94_A LRP-6, low-density lipo 97.2 0.16 5.4E-06 47.6 34.8 207 17-230 40-249 (619)
297 1tl2_A L10, protein (tachylect 97.1 0.036 1.2E-06 43.7 14.9 142 66-218 42-204 (236)
298 3amr_A 3-phytase; beta-propell 97.0 0.099 3.4E-06 44.6 17.7 172 7-181 60-262 (355)
299 4a0p_A LRP6, LRP-6, low-densit 96.9 0.29 1E-05 45.9 30.9 183 37-226 13-199 (628)
300 2ism_A Putative oxidoreductase 96.9 0.18 6.3E-06 43.4 21.0 103 18-125 32-153 (352)
301 2xbg_A YCF48-like protein; pho 96.8 0.21 7E-06 42.6 32.4 270 66-372 37-319 (327)
302 2xzh_A Clathrin heavy chain 1; 96.6 0.25 8.6E-06 41.6 21.6 129 172-312 48-188 (365)
303 3pbp_A Nucleoporin NUP82; beta 96.6 0.21 7.2E-06 43.7 17.4 135 39-177 41-207 (452)
304 2vpj_A Kelch-like protein 12; 96.6 0.27 9.4E-06 41.1 22.1 146 75-227 14-187 (301)
305 3s94_A LRP-6, low-density lipo 96.5 0.56 1.9E-05 43.9 27.3 201 18-226 350-553 (619)
306 3kya_A Putative phosphatase; s 96.3 0.56 1.9E-05 42.3 26.3 159 18-180 140-339 (496)
307 2xn4_A Kelch-like protein 2; s 96.2 0.43 1.5E-05 39.9 20.3 144 77-227 17-185 (302)
308 2g8s_A Glucose/sorbosone dehyd 96.2 0.51 1.7E-05 40.6 24.6 116 107-223 18-172 (353)
309 2vpj_A Kelch-like protein 12; 95.9 0.6 2.1E-05 38.9 20.7 144 75-226 112-280 (301)
310 3a9g_A Putative uncharacterize 95.9 0.76 2.6E-05 39.6 25.8 141 66-211 30-215 (354)
311 3pbp_A Nucleoporin NUP82; beta 95.6 1.1 3.7E-05 39.3 20.2 151 71-223 27-211 (452)
312 3sre_A PON1, serum paraoxonase 95.2 1.3 4.6E-05 38.0 21.6 154 66-224 51-252 (355)
313 1cru_A Protein (soluble quinop 95.2 1.7 5.7E-05 38.9 19.7 58 66-123 28-96 (454)
314 3ii7_A Kelch-like protein 7; p 95.0 1.3 4.5E-05 36.9 23.3 142 78-226 14-180 (306)
315 2xn4_A Kelch-like protein 2; s 94.7 1.6 5.5E-05 36.3 19.8 145 75-226 108-278 (302)
316 1tl2_A L10, protein (tachylect 94.4 1.5 5.1E-05 34.7 14.4 105 17-131 41-157 (236)
317 2g8s_A Glucose/sorbosone dehyd 94.4 2.2 7.6E-05 36.6 24.9 51 66-117 19-76 (353)
318 3ii7_A Kelch-like protein 7; p 94.2 2.1 7.1E-05 35.7 18.7 145 75-226 101-274 (306)
319 1zgk_A Kelch-like ECH-associat 94.0 2.3 7.9E-05 35.5 15.4 144 75-226 121-289 (308)
320 3sre_A PON1, serum paraoxonase 93.8 2.9 0.0001 35.9 25.6 181 37-223 81-297 (355)
321 3a9g_A Putative uncharacterize 93.7 3 0.0001 35.8 27.1 102 107-212 29-153 (354)
322 3das_A Putative oxidoreductase 93.7 3 0.0001 35.6 28.3 143 66-211 33-219 (347)
323 3ei3_A DNA damage-binding prot 93.6 7 0.00024 39.6 39.1 113 66-181 515-635 (1158)
324 1zgk_A Kelch-like ECH-associat 93.3 3.1 0.0001 34.7 20.4 143 75-226 24-195 (308)
325 3sbq_A Nitrous-oxide reductase 92.9 5.4 0.00018 36.4 19.5 88 280-375 320-408 (638)
326 1xi4_A Clathrin heavy chain; a 92.5 3.7 0.00013 42.0 15.2 128 172-311 47-186 (1630)
327 3ei3_A DNA damage-binding prot 92.5 10 0.00035 38.4 38.0 174 174-374 808-998 (1158)
328 4asc_A Kelch repeat and BTB do 92.0 4.7 0.00016 33.7 19.1 133 75-214 98-253 (315)
329 4asc_A Kelch repeat and BTB do 91.3 5.7 0.00019 33.2 20.3 140 79-226 8-176 (315)
330 3das_A Putative oxidoreductase 90.7 7.2 0.00025 33.3 15.3 53 193-245 31-90 (347)
331 2be1_A Serine/threonine-protei 90.7 7.1 0.00024 33.2 15.1 113 77-190 11-138 (339)
332 2xzh_A Clathrin heavy chain 1; 88.7 10 0.00035 32.1 32.1 220 85-316 48-293 (365)
333 2woz_A Kelch repeat and BTB do 87.7 11 0.00038 31.4 19.7 133 75-214 109-263 (318)
334 1xi4_A Clathrin heavy chain; a 87.7 28 0.00096 36.0 18.9 132 85-226 47-190 (1630)
335 2uvk_A YJHT; unknown function, 87.1 13 0.00044 31.5 17.8 52 75-127 65-128 (357)
336 2woz_A Kelch repeat and BTB do 86.6 13 0.00044 31.0 22.4 135 87-226 25-186 (318)
337 2be1_A Serine/threonine-protei 86.4 5.9 0.0002 33.7 10.1 116 119-234 11-140 (339)
338 1cru_A Protein (soluble quinop 86.1 18 0.00062 32.2 16.7 105 107-212 27-162 (454)
339 3sbq_A Nitrous-oxide reductase 85.0 12 0.00041 34.2 11.5 114 107-225 323-479 (638)
340 2zwa_A Leucine carboxyl methyl 84.1 29 0.001 32.9 17.1 150 75-226 451-637 (695)
341 1bpo_A Protein (clathrin); cla 83.6 23 0.0008 31.3 26.0 197 18-224 107-331 (494)
342 1bpo_A Protein (clathrin); cla 83.4 24 0.00081 31.3 31.7 222 85-316 47-292 (494)
343 2zwa_A Leucine carboxyl methyl 80.4 40 0.0014 31.9 20.8 151 74-226 396-579 (695)
344 4gq2_M Nucleoporin NUP120; bet 80.0 12 0.00041 37.0 10.8 39 284-322 237-275 (950)
345 2wg3_C Hedgehog-interacting pr 79.0 35 0.0012 30.4 24.3 51 67-117 16-79 (463)
346 3s25_A Hypothetical 7-bladed b 77.2 30 0.001 28.7 21.9 113 173-303 88-204 (302)
347 3b7f_A Glycosyl hydrolase, BNR 76.3 37 0.0013 29.2 21.5 153 16-173 54-254 (394)
348 2uvk_A YJHT; unknown function, 72.9 42 0.0014 28.3 17.6 40 173-214 86-128 (357)
349 3ott_A Two-component system se 71.4 72 0.0025 30.4 38.3 267 16-309 21-303 (758)
350 3s25_A Hypothetical 7-bladed b 70.8 44 0.0015 27.7 20.6 141 70-226 58-218 (302)
351 3zwu_A Alkaline phosphatase PH 63.0 34 0.0012 31.6 8.8 57 68-124 479-548 (592)
352 4gq2_M Nucleoporin NUP120; bet 61.6 14 0.00047 36.6 6.4 37 66-102 237-273 (950)
353 2wg3_C Hedgehog-interacting pr 60.3 93 0.0032 27.7 14.9 111 18-128 15-160 (463)
354 3f7f_A Nucleoporin NUP120; nuc 58.7 84 0.0029 29.8 10.6 32 291-322 228-259 (729)
355 4a9v_A PHOX; hydrolase, beta-p 56.3 67 0.0023 29.5 9.3 60 66-125 477-549 (592)
356 4fhn_B Nucleoporin NUP120; pro 49.5 15 0.0005 37.3 4.5 37 66-102 239-275 (1139)
357 3ott_A Two-component system se 47.8 1.9E+02 0.0064 27.5 33.9 271 17-310 146-445 (758)
358 3f7f_A Nucleoporin NUP120; nuc 47.1 34 0.0012 32.3 6.1 35 67-103 224-258 (729)
359 3qhy_B Beta-lactamase inhibito 43.1 1.3E+02 0.0046 24.4 17.5 181 18-222 64-244 (282)
360 3b7f_A Glycosyl hydrolase, BNR 40.6 1.7E+02 0.0058 24.9 22.0 145 18-168 116-296 (394)
361 4fhn_B Nucleoporin NUP120; pro 38.2 29 0.00099 35.1 4.6 37 196-232 240-276 (1139)
362 3qhy_B Beta-lactamase inhibito 38.0 1.6E+02 0.0055 23.9 19.2 143 66-223 25-167 (282)
363 3q6k_A 43.2 kDa salivary prote 24.8 3.3E+02 0.011 23.4 23.2 169 40-211 124-341 (381)
364 4a9v_A PHOX; hydrolase, beta-p 22.1 4.7E+02 0.016 24.1 9.8 60 151-212 477-549 (592)
365 3zwu_A Alkaline phosphatase PH 20.3 3.8E+02 0.013 24.7 8.2 54 109-162 478-543 (592)
No 1
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-50 Score=353.61 Aligned_cols=317 Identities=68% Similarity=1.178 Sum_probs=266.0
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS 81 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 81 (380)
.+++++|..+|.||.+.|++|+|+|+.+++|+|||.||+|++||+.........+...+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 46788999999999999999999998778999999999999999987655555566678899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
++.|+.|++|+............+...+....+++++..+++++.|+.+++||............+|...+.+++|+++.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999999988888888888999999999999999999999999999887777667777899999999999988
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 241 (380)
...++++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++|+.|+.|++||+.+.+.+..+.+.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~------- 256 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG------- 256 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-------
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-------
Confidence 8888999999999999999999988888999999999999999999999999999999999887765444322
Q ss_pred eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984 242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD 321 (380)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 321 (380)
..+.++.|+|++.+ ++++.|+.|++||+.....
T Consensus 257 -----------------------------------------~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~----- 289 (340)
T 4aow_A 257 -----------------------------------------DIINALCFSPNRYW-LCAATGPSIKIWDLEGKII----- 289 (340)
T ss_dssp -----------------------------------------SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEE-----
T ss_pred -----------------------------------------ceEEeeecCCCCce-eeccCCCEEEEEECCCCeE-----
Confidence 23456677777654 5566799999998754433
Q ss_pred cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984 322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR 378 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~ 378 (380)
+..+...........+...|.+++|+|||++|++|+.||.|+||++..+++
T Consensus 290 ------~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 290 ------VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp ------EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred ------EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 222332222233456778899999999999999999999999999998764
No 2
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-50 Score=350.99 Aligned_cols=312 Identities=51% Similarity=0.850 Sum_probs=258.2
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS 81 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 81 (380)
+.+.+.+..+|.||.+.|++++++|..+++|++|+.|++|++|++.........+...+.+|...|.+++|+|++++|++
T Consensus 3 ~~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp -CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 35678899999999999999999997678999999999999999875443344455678899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
|+.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.|+.|++||+...... ...+|...|.++++.|..
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~--~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA--TLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECCC-
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEeccCCcEEEEEEccCC
Confidence 999999999999999999999999999999999999999999999999999998654332 335789999999999864
Q ss_pred C----CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984 162 Q----NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237 (380)
Q Consensus 162 ~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i 237 (380)
. ...+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 236 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---- 236 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC----
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence 2 34799999999999999999888888889999999999999999999999999999999988765543321
Q ss_pred EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 317 (380)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 317 (380)
...+.+++|+|++.+|++++. ..+++|+......
T Consensus 237 --------------------------------------------~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~- 270 (319)
T 3frx_A 237 --------------------------------------------QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYL- 270 (319)
T ss_dssp --------------------------------------------CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEE-
T ss_pred --------------------------------------------CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCee-
Confidence 124668899999999988775 4599998654322
Q ss_pred eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
...+++... .....+...+.+++|+|||++|++|+.||.|+||++.+.
T Consensus 271 ----------~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 ----------VDDLRPEFA-GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ----------EEEECCCCT-TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ----------eeccCcccc-ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 222221110 011223456789999999999999999999999999754
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.6e-49 Score=370.39 Aligned_cols=346 Identities=24% Similarity=0.359 Sum_probs=270.9
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc-------------------------------
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY------------------------------- 53 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~------------------------------- 53 (380)
+.++...|.+|.+.|++++++|+ +++||+|+.||+|++||+.......
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CcccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 34566788999999999999998 7899999999999999985321100
Q ss_pred ----------ccccccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE
Q psy6984 54 ----------GVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122 (380)
Q Consensus 54 ----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 122 (380)
......+.+|...|++++|+|++. +|++|+.|+.|++||..+++....+.+|...|.+++|+|++++++
T Consensus 127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 001123568999999999999986 699999999999999999988999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCcceEEEeeC------CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE---------
Q psy6984 123 SSSRDKTIKLWNTLAHCKFTIVED------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--------- 187 (380)
Q Consensus 123 s~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------- 187 (380)
+++.|++|++||...+.....+.. +|...|.+++|+|+++ +|++++.|++|++||+.+.+...
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 999999999999877665555433 7999999999999765 79999999999999998754322
Q ss_pred ----------------------------------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--
Q psy6984 188 ----------------------------------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-- 231 (380)
Q Consensus 188 ----------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-- 231 (380)
...+|...|.+++|+|+|++|++++.|+.|++||+.+++....+
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence 23478889999999999999999999999999999877654432
Q ss_pred EecCceEE------------------------------------------------------------------------
Q psy6984 232 VHNDIITA------------------------------------------------------------------------ 239 (380)
Q Consensus 232 ~~~~~i~~------------------------------------------------------------------------ 239 (380)
.|...+.+
T Consensus 365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 12233333
Q ss_pred ---------EEeecCcccceeeeeeeeeccccceEEEEcCCceee-eeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984 240 ---------LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME-TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309 (380)
Q Consensus 240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 309 (380)
++|+|++.+ +.....++.+.+|++..+... .....|...|.+++|+|+|++|++++.|++|++|
T Consensus 445 ~~~~~~v~~va~spdg~~------lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 445 VPISYNSSCVALSNDKQF------VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp EECSSCEEEEEECTTSCE------EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eecCCCceEEEEeCCCCE------EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence 333333322 122334667889988776542 1225677889999999999999999999999999
Q ss_pred ecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 310 NTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
+.....+ .... .....|...|.+++|+|||++||+|+.|+.|++|++..+
T Consensus 519 ~~~~~~~----------~~~~-------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 519 SVANNFE----------LAHT-------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EGGGTTE----------ESCC-------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EcCCCCc----------eeee-------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 8643111 1100 011236778999999999999999999999999998643
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-48 Score=368.77 Aligned_cols=334 Identities=25% Similarity=0.375 Sum_probs=269.0
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL 88 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 88 (380)
..++.+|.+.|++++|+|+.+.+|++|+.|++|++|+..... ....+.+|...|++++|+|+|++|++|+.|+.|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i 214 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 214 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence 456889999999999999855579999999999999965321 234578999999999999999999999999999
Q ss_pred EEEECCCCceeeeec-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE-------------------
Q psy6984 89 RLWDLAAGKTTRRFE-------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT------------------- 142 (380)
Q Consensus 89 ~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~------------------- 142 (380)
++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+.....
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence 999999998888774 799999999999999999999999999999976543221
Q ss_pred -----------------------EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-e--------
Q psy6984 143 -----------------------IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-S-------- 190 (380)
Q Consensus 143 -----------------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~-------- 190 (380)
....+|...|.+++|+|+++ +|++++.|++|++||+.+.+..... .
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~--~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence 12347889999999999765 7999999999999998754321110 0
Q ss_pred -------------------------------------------------------------------------CCccceE
Q psy6984 191 -------------------------------------------------------------------------GHTGYLN 197 (380)
Q Consensus 191 -------------------------------------------------------------------------~~~~~i~ 197 (380)
.|...+.
T Consensus 373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 452 (611)
T 1nr0_A 373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS 452 (611)
T ss_dssp EEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred EEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence 1223467
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC-cee
Q psy6984 198 TVTVSPDGSLCASGGKDMNAMLWDLNDGKH--LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH-GKM 274 (380)
Q Consensus 198 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (380)
+++|+|+|++|++|+.|+.|++||+..+.. .....|...|.+++|+|++.+.. ....+..+.+|+... ++.
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la------s~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV------ATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE------EEETTSCEEEEEGGGTTEE
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE------EEcCCCCEEEEEcCCCCce
Confidence 899999999999999999999999987653 23456888999999999987633 334578899999976 554
Q ss_pred eee-eec-cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCC-CCceEEEE
Q psy6984 275 ETP-FFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD-PPMCLSLA 351 (380)
Q Consensus 275 ~~~-~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 351 (380)
... ... |...|.+++|+||+++|++|+.|++|++|++..+.+.. .. ....| ...|.+++
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~---------~~---------~~~~h~~~~v~~v~ 588 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP---------II---------IKGAHAMSSVNSVI 588 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC---------EE---------ETTSSTTSCEEEEE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc---------ch---------hhccCcccCeeEEE
Confidence 433 333 78899999999999999999999999999875432100 00 11234 56789999
Q ss_pred EecCCCEEEEEeeCCeEEEEEee
Q psy6984 352 WSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 352 ~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
|+||++ |++|+.|+.|++|++.
T Consensus 589 fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 589 WLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTE-EEEEETTSCEEEEECC
T ss_pred EcCCCE-EEEecCCCCEEEEecc
Confidence 999999 9999999999999984
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=339.18 Aligned_cols=296 Identities=22% Similarity=0.352 Sum_probs=250.1
Q ss_pred eEEeEEecCcccceEEEEeCCC---CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPK---FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 82 (380)
..+...+.+|.+.|++++|+|+ .+.+|+||+.|++|++|++..... .....+.+|...|.++.+++++.+++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence 4456677899999999999874 246899999999999999864321 1223578999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
+.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++.|+.+++|++......... ..+...+.+++|+|+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK 177 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSS
T ss_pred eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999998776655443 36777899999999764
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||++.++....
T Consensus 178 --~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~------------ 243 (321)
T 3ow8_A 178 --YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT------------ 243 (321)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE------------
T ss_pred --EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE------------
Confidence 799999999999999999998888899999999999999999999999999999999987654322
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
+.+|...|.+++|+|++++|++|+.|++|++||+..+..
T Consensus 244 -----------------------------------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~------ 282 (321)
T 3ow8_A 244 -----------------------------------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC------ 282 (321)
T ss_dssp -----------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------
T ss_pred -----------------------------------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE------
Confidence 123445688999999999999999999999998754432
Q ss_pred ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
+..+ ..|...|.+++|+|+|++|++++.||.|++||..
T Consensus 283 -----~~~~---------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 283 -----VHTF---------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -----EEEE---------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -----EEEE---------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 2222 2345678899999999999999999999999974
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-48 Score=347.62 Aligned_cols=289 Identities=29% Similarity=0.507 Sum_probs=250.0
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL 88 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 88 (380)
...+.||.+.|+++.|+|+ +.+|++|+.||+|++||+.... ....+.+|...|.+++|+|++++|++|+.|+.|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 4578899999999999998 6899999999999999986543 234578999999999999999999999999999
Q ss_pred EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+........+ .+|...|.++.++|++. +|++
T Consensus 175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~--~l~s 251 (410)
T 1vyh_C 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGT--LIAS 251 (410)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSS--EEEE
T ss_pred EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCC--EEEE
Confidence 99999999999999999999999999999999999999999999998876655443 47899999999998764 7999
Q ss_pred EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC--------------------CCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD--------------------GSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
++.|+.|++||+.+.+....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.+++.+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 999999999999998888888899999999999996 678999999999999999887654
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL 308 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 308 (380)
..+ .+|...|.+++|+|++++|++|+.||+|++
T Consensus 332 ~~~-----------------------------------------------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 332 MTL-----------------------------------------------VGHDNWVRGVLFHSGGKFILSCADDKTLRV 364 (410)
T ss_dssp EEE-----------------------------------------------ECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred EEE-----------------------------------------------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 332 133456778999999999999999999999
Q ss_pred EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
||...+..+.. + ..|...|.+++|+|++++|++|+.||.|+||++
T Consensus 365 wd~~~~~~~~~-----------~---------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 365 WDYKNKRCMKT-----------L---------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCTTSCCCEE-----------E---------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EECCCCceEEE-----------E---------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 98754322211 1 235567899999999999999999999999986
No 7
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.6e-47 Score=332.00 Aligned_cols=316 Identities=40% Similarity=0.799 Sum_probs=249.2
Q ss_pred eeEEeEEecCcccceEEEEe-----CCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccCCC
Q psy6984 5 TLQLRGTLNGHNGWVTQIAT-----NPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSDGN 77 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~-----~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (380)
.+++...|.||.+.|+++++ ++..+.+|+||+.|++|++|++...... ...+...+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45678899999999999999 6634789999999999999998653321 2234456789999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEE
Q psy6984 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVR 156 (380)
Q Consensus 78 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~ 156 (380)
+|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.|+.|++||+......... ...|...|.+++
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999998754333221 136888999999
Q ss_pred EccCCCC--------CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-E
Q psy6984 157 FSPNHQN--------PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK-H 227 (380)
Q Consensus 157 ~~~~~~~--------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~ 227 (380)
|+|.... .+|++++.|+.|++||. ..+....+.+|...|.+++|+|+|++|++|+.|+.|++||+.... .
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 9997531 58999999999999995 445566778899999999999999999999999999999984321 1
Q ss_pred EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
... +.+...|.+++|+|+++++++ +.|+.|+
T Consensus 249 ~~~------------------------------------------------~~~~~~v~~v~~sp~~~~la~-~~d~~v~ 279 (343)
T 2xzm_R 249 QRE------------------------------------------------FDAGSTINQIAFNPKLQWVAV-GTDQGVK 279 (343)
T ss_dssp SEE------------------------------------------------EECSSCEEEEEECSSSCEEEE-EESSCEE
T ss_pred cee------------------------------------------------ecCCCcEEEEEECCCCCEEEE-ECCCCEE
Confidence 000 011234778999999988765 4688899
Q ss_pred EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984 308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS 377 (380)
Q Consensus 308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~ 377 (380)
+|++.......+...... +.........+...+.+++|+|+|++|++|+.||.|++|++..+.
T Consensus 280 iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAE-------PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEESSSCCSCSEEECCCC-------SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEEeCCCCCCceEEeecC-------cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 999765433221111100 000011123466778999999999999999999999999998754
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-47 Score=333.50 Aligned_cols=292 Identities=25% Similarity=0.448 Sum_probs=246.4
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
++...+|.||.+.|+++.|+|+ +.+|++|+.||+|++||+.... ....+..|...|.+++|+|++++|++|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred chhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 4567789999999999999998 6899999999999999976432 233457788999999999999999999999
Q ss_pred CcEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 86 KTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 86 ~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
+.|++|++.++ +....+.+|...|.++.|++++. +++++.|+.|++||+.+...... ..+|...|.+++|+|++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE-EcCCCCceEEEEECCCC
Confidence 99999999875 34566788999999999998765 89999999999999877655444 35789999999999975
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 241 (380)
. ++++++.|+.|++||+++......+.+|...|.+++|+|++++|++|+.|+.|++||++.++.+..+.+.
T Consensus 197 ~--~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~------- 267 (340)
T 1got_B 197 R--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------- 267 (340)
T ss_dssp S--EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-------
T ss_pred C--EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC-------
Confidence 4 8999999999999999998888888899999999999999999999999999999999887654332211
Q ss_pred eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984 242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD 321 (380)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 321 (380)
.+...|.+++|+|++++|++|+.||.|++||.........
T Consensus 268 --------------------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~-- 307 (340)
T 1got_B 268 --------------------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-- 307 (340)
T ss_dssp --------------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred --------------------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE--
Confidence 0113477899999999999999999999998754332211
Q ss_pred cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
+ ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 308 ---------~---------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 ---------L---------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------E---------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------e---------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 1 23556789999999999999999999999996
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-46 Score=332.23 Aligned_cols=295 Identities=24% Similarity=0.407 Sum_probs=247.1
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
++...+|.||.+.|++++|+|+ +.+|+||+.||+|++||...... ...+..|...|.+++|+|++++|++|+.|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 3467889999999999999998 68999999999999999754322 23456688889999999999999999999
Q ss_pred CcEEEEECCCC------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984 86 KTLRLWDLAAG------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 86 ~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (380)
+.+++|++... .....+..|...|.+++|+|++..+++++.|++|++||+.+......+ .+|...|.++.++|
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAP 206 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEe
Confidence 99999998653 234566789999999999999999999999999999998876655443 47888999999998
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239 (380)
Q Consensus 160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 239 (380)
.....+|++|+.|+.|++||+++.+....+.+|...|++++|+|++.+|++++.|+.|++||++.++.+..+...
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~----- 281 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE----- 281 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----
Confidence 765568999999999999999999888888899999999999999999999999999999999876543222100
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeE
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 319 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 319 (380)
.+...+.+++|+|++++|++|+.|++|++||+..+..+.
T Consensus 282 ----------------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~- 320 (354)
T 2pbi_B 282 ----------------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS- 320 (354)
T ss_dssp ----------------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-
T ss_pred ----------------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-
Confidence 011246688999999999999999999999875443221
Q ss_pred eecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 320 VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
.+ ..|...|.+++|+|||++|++|+.||.|+||+
T Consensus 321 ----------~l---------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ----------IL---------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ----------EE---------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ----------EE---------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 11 24566789999999999999999999999995
No 10
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-46 Score=359.96 Aligned_cols=319 Identities=56% Similarity=0.973 Sum_probs=256.3
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
+.+...|.+|.+.|++|+++|+.+++|+|||.||+|++|++.............+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45677899999999999999986789999999999999998765444444455688999999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee--CCCcCcEEEEEEccCCCC
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNHQN 163 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 163 (380)
+.|+|||+.+++....+.+|...|.+++|+|+++.+++++.|++|++||....+...... .+|...|.|++|+|++..
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 999999999999999999999999999999999999999999999999986655444332 468889999999998766
Q ss_pred CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS 243 (380)
Q Consensus 164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~ 243 (380)
..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---------- 601 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---------- 601 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC----------
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC----------
Confidence 7899999999999999999988888899999999999999999999999999999999988765433211
Q ss_pred cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984 244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE 323 (380)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~ 323 (380)
...+.+++|+|++.+|++++ |+.|++||+..+..+..+...
T Consensus 602 --------------------------------------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 602 --------------------------------------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp --------------------------------------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCC
T ss_pred --------------------------------------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccc
Confidence 12356788999988887765 667999998766554433221
Q ss_pred cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
......... .........+...|.+++|||||++|++|+.||.|+||++.
T Consensus 643 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 643 LKAEAEKAD-NSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CC-----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccc-ccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 111000000 00000111222347899999999999999999999999985
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.9e-46 Score=320.92 Aligned_cols=294 Identities=22% Similarity=0.377 Sum_probs=242.6
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
+++..+|.+|.+.|++++|+|+ +.+|++++.||+|++||+.... ....+..|...|.++.|+|++++|++|+.|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 4577889999999999999998 6899999999999999986432 234567899999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
+.|++||+.+++.+..+..|...|.+++|+|++.++++|+.|++|++||+...........+|...|.+++|+|... ..
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~ 155 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-ST 155 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT-TE
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC-CE
Confidence 99999999999999999999999999999999999999999999999998776555555678999999999999533 37
Q ss_pred EEEEeCCCeEEEEeCCCceeeEee-eCCccceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 166 IVSAGWDRMVKVWNLTNCKLKINH-SGHTGYLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
|++|+.|++|++||++........ .+|...+..+.++| ++++|++|+.|+.|++||+++++.+..+
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~----------- 224 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----------- 224 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----------
Confidence 999999999999999876554443 35667889999986 7789999999999999999887654332
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
.+|...|.+++|+|++++|++|+.||+|++||..++.
T Consensus 225 ------------------------------------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~------- 261 (304)
T 2ynn_A 225 ------------------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK------- 261 (304)
T ss_dssp ------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------
T ss_pred ------------------------------------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------
Confidence 2344567789999999999999999999999865432
Q ss_pred ccceEEEeeCcccccccCCCCCCceEEEEEecCCC--EEEEEeeCCeEEEEEee
Q psy6984 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ--TLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~g~~dg~v~iw~~~ 374 (380)
+...+ ..+...+.+++|+|+|+ ++++|+.| .+.+|++.
T Consensus 262 ----~~~~~---------~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 262 ----VEKTL---------NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp ----EEEEE---------CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred ----eeeec---------cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence 22222 12344578899999886 46766544 47788765
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-46 Score=329.37 Aligned_cols=326 Identities=20% Similarity=0.310 Sum_probs=248.2
Q ss_pred eeeEEeEEecCccc-ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984 4 ETLQLRGTLNGHNG-WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 4 ~~~~~~~~~~~h~~-~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 82 (380)
+.+++..+|.+|.+ .|.+++|+|+ +.+|++|+.|++|++|++...... .......+|...|.+++|+|++++|++|
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred ccEEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEE
Confidence 46788999999998 9999999998 789999999999999998643211 0112236899999999999999999999
Q ss_pred eCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEEEEEc
Q psy6984 83 SWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSCVRFS 158 (380)
Q Consensus 83 ~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~ 158 (380)
+.|+.|++||+..+. ....+.+|...|.+++|+|++++|++++.|+.|++||+..... ......+|...|.+++|+
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 999999999988763 5677889999999999999999999999999999999865432 233446889999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc
Q psy6984 159 PNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI 236 (380)
Q Consensus 159 ~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 236 (380)
|++. +|++++.|+.|++||++..+ ....+.+|...|.+++|+|+|++|++++.|+.|++||....... ..
T Consensus 160 p~~~--~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~------~~ 231 (345)
T 3fm0_A 160 PSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE------QG 231 (345)
T ss_dssp SSSS--CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT------TC
T ss_pred CCCC--EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC------cc
Confidence 9765 69999999999999998764 33567789999999999999999999999999999986332110 00
Q ss_pred eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 315 (380)
Q Consensus 237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 315 (380)
+.... .+ .. .+....+.+ |...|++++|+|++..|++++.|+.|++|+.....
T Consensus 232 ~~~~~--~~----------------~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 232 VACSG--SD----------------PS--------WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CCCC---------------------CE--------EEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ceeec--cC----------------Cc--------cceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 00000 00 00 000111112 45678999999999999999999999999864321
Q ss_pred eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC-CEEEEEeeCCeEEEEEeeeec
Q psy6984 316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QTLFAGYSDNTIRVWQVSVTS 377 (380)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~g~~dg~v~iw~~~~~~ 377 (380)
... ....... ......|...|.+++|+|++ .+||+|+.||.|++|++....
T Consensus 286 ~~~---~~~~~~~--------~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 286 DPQ---QPTFSLT--------AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CTT---SCCEEEE--------EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred Ccc---eeeEEEE--------eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 100 0000000 01123567789999999998 489999999999999987544
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.2e-47 Score=337.79 Aligned_cols=311 Identities=24% Similarity=0.415 Sum_probs=251.1
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS 81 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 81 (380)
++.++.+..+|.||.+.|++++|+|+ +++|++|+.||+|++||..... ....+.+|...|.+++|+|++++|++
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccceeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEE
Confidence 34567788899999999999999997 6899999999999999975432 23456789999999999999999999
Q ss_pred EeCCCcEEEEECCCCc-------eeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee----CCCc
Q psy6984 82 GSWDKTLRLWDLAAGK-------TTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE----DGHS 149 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~----~~~~ 149 (380)
|+.|+.|++||+.+.. ....+.+|.+.|.++.|+|++ ..+++|+.|++|++||+.++....... .+|.
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 9999999999987532 345577899999999999974 579999999999999988776654432 5788
Q ss_pred CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
..|.++.+++.. ..+|++|+.|+.|++||++. .+....+.+|...|++++|+|++++|++|+.|+.|++||+++++.+
T Consensus 206 ~~v~~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 206 ADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp SCEEEEEECSSS-CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred cCeEEEEeecCC-CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 899999998743 34899999999999999984 4556677899999999999999999999999999999999988765
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL 308 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 308 (380)
..+.... .. ...+...+.+++|+|+|++|++|+.||.|++
T Consensus 285 ~~~~~~~---------~~-------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 285 QVYNREP---------DR-------------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp EEECCCC---------SS-------------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred EEecccc---------cc-------------------------------cccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 4432110 00 0011234778999999999999999999999
Q ss_pred EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
||...+... ..+. .....|...|.+++|+|||++|++|+.||.|+||++.-
T Consensus 325 wd~~~~~~~-----------~~~~-----~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 325 WDTLLAEMV-----------LNLG-----TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EETTTCCEE-----------EEEC-----CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EECCCCceE-----------EEEe-----cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 987543221 1111 11234667789999999999999999999999999863
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8e-45 Score=341.95 Aligned_cols=324 Identities=35% Similarity=0.533 Sum_probs=272.4
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
++...+.+|...|+++.++|+ +..+++++.|++|++|+.... ....+.+|...|.+++|+|++++|++++.|+
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~ 325 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCc------EEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence 456788999999999999998 689999999999999996432 2345678999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
.|++||+.. +....+..|...+.+++|+|+++.+++++.|+.+++||.... ... ...+|...|.+++|+|+++ +|
T Consensus 326 ~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~-~~~~~~~~v~~~~~s~dg~--~l 400 (577)
T 2ymu_A 326 TVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ-TLTGHSSSVRGVAFSPDGQ--TI 400 (577)
T ss_dssp CEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EEE-EEECCSSCEEEEEECTTSS--CE
T ss_pred eEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EEE-EecCCCCCeEEEEECCCCC--EE
Confidence 999999764 456677889999999999999999999999999999996443 222 2347888999999999865 68
Q ss_pred EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984 167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN 245 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~ 245 (380)
++++.|+.|++||.. .+....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+ .|...+.+++|+|+
T Consensus 401 ~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 401 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp EEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTT
T ss_pred EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCC
Confidence 999999999999964 45666778899999999999999999999999999999974 4555444 57889999999999
Q ss_pred cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK 325 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 325 (380)
+.+.. ....++.+.+|+. .++....+..|...|.+++|+|++++|++++.||.|++||.. +.
T Consensus 479 ~~~la------s~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---------- 540 (577)
T 2ymu_A 479 GQTIA------SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------- 540 (577)
T ss_dssp SCEEE------EEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC----------
T ss_pred CCEEE------EEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC----------
Confidence 87633 2335678999995 566677788899999999999999999999999999999842 21
Q ss_pred eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
.+..+ ..|...|.+++|+|||++|++++.|+.|++||
T Consensus 541 -~~~~~---------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 -LLQTL---------TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -EEEEE---------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -EEEEE---------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 11111 23566789999999999999999999999997
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-44 Score=314.43 Aligned_cols=306 Identities=19% Similarity=0.281 Sum_probs=228.6
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccc-c-CCCcceEEEEEccCCCEEEEE
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-K-GHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~s~ 82 (380)
.+++..+|.+|.+.|.+++++|+ +|++|+.|++|++|++...... ....+ . +|...|.+++|+|++++|++|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 45688899999999999999875 8999999999999998653211 11222 3 499999999999999999999
Q ss_pred eCCCcEEEEECCC-------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-c--eEEEeeCCCcCcE
Q psy6984 83 SWDKTLRLWDLAA-------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-C--KFTIVEDGHSDWV 152 (380)
Q Consensus 83 ~~d~~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-~--~~~~~~~~~~~~v 152 (380)
+.|+.|+|||+.. .+....+.+|...|.+++|+|++++|++++.|+.|++||+... . .......+|...|
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 9999999999853 3456678899999999999999999999999999999998432 1 2233446899999
Q ss_pred EEEEEccCCCCCEEEEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcCC--CCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSPD--GSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
.+++|+|++. +|++++.|++|++||.... +....+.+|...|.+++|+|+ +.+|++++.|+.|++||+..+..
T Consensus 157 ~~v~~~p~~~--~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~- 233 (330)
T 2hes_X 157 KHVIWHPSEA--LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE- 233 (330)
T ss_dssp EEEEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT-
T ss_pred EEEEECCCCC--EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc-
Confidence 9999999754 7999999999999998765 456677899999999999998 77899999999999999753210
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
.. .. .| .....+. .|...|.+++|+++ .+|++++.||+|+
T Consensus 234 -----~~-----------~~-----------------~~-----~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~ 274 (330)
T 2hes_X 234 -----DD-----------QQ-----------------EW-----VCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLA 274 (330)
T ss_dssp -----TS-----------CE-----------------EE-----EEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEE
T ss_pred -----cc-----------cc-----------------ee-----EEeeecccccccceEEEEEcCC-CEEEEEeCCCEEE
Confidence 00 00 00 0001111 24567899999965 4899999999999
Q ss_pred EEecccceeeeEeecccceEEEeeCcccccccCCCCCC-ceEEEEEec--CCCEEEEEeeCCeEEEEEeee
Q psy6984 308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP-MCLSLAWST--DGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~g~~dg~v~iw~~~~ 375 (380)
+|+...+.. +.... ....|.. .+.+++|+| ++++||+|+.||.|++|++..
T Consensus 275 iw~~~~~~~---------~~~~~--------~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 275 VYEEVDGEW---------KVFAK--------RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTEE---------EEEEE--------ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEcCCCce---------EEEec--------cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 998643210 01100 0122343 688999999 799999999999999999864
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=317.21 Aligned_cols=290 Identities=17% Similarity=0.150 Sum_probs=224.1
Q ss_pred cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--Ccc----cccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--NYG----VPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
..|...|+++.|+|+ +.+|++++ |+++|+||...... ... ........|...|.+++|+|++ +|++|+.||
T Consensus 27 ~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 357788999999998 67888877 77889997431100 000 0011123456789999999985 788999999
Q ss_pred cEEEEECCCCceeee----ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 87 TLRLWDLAAGKTTRR----FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
.|+|||+.+++.... ..+|...|.+++|+|++++|++|+.|++|++||+.++..... ..+|...|.+++|+|++.
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~-~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS-YRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECSSCT
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCcCCceEEEEecCCCC
Confidence 999999998876543 347999999999999999999999999999999887665544 458999999999999864
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984 163 NPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 239 (380)
. +|++++.|++|++||+++.+....+ ..|...+.+++|+|+ +++|++|+.|+.|++||+++++.+..
T Consensus 183 ~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------- 252 (344)
T 4gqb_B 183 S-VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------- 252 (344)
T ss_dssp T-EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE---------
T ss_pred C-ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE---------
Confidence 3 7899999999999999987765544 345567899999994 67889999999999999987654322
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceeee
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFT 318 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~ 318 (380)
+..|...|.+++|+|++ ++|++|+.|++|++||...+.
T Consensus 253 --------------------------------------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--- 291 (344)
T 4gqb_B 253 --------------------------------------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--- 291 (344)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---
T ss_pred --------------------------------------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---
Confidence 22344568889999987 579999999999999864432
Q ss_pred EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEeeCCeEEEEEeee
Q psy6984 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~~dg~v~iw~~~~ 375 (380)
+.. ...|...|.+++|+|+|+ +|++|+.||.|++|++..
T Consensus 292 --------~~~----------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 292 --------LFR----------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp --------EEE----------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred --------EEE----------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 111 134667799999999987 567899999999999864
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-43 Score=332.19 Aligned_cols=325 Identities=35% Similarity=0.535 Sum_probs=273.3
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
++...+.+|.+.|.+++++|+ +.+|++++.|+.|++|+.... ....+.+|...|.+++|+|++++|++++.|+
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~ 284 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeCCCC------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 456788999999999999998 689999999999999985422 2345678999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
.|++||. +++....+.+|...|.+++|+|+++.+++++.|+.+++||....... ...+|...+.+++|+|++. .|
T Consensus 285 ~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~~s~~g~--~l 359 (577)
T 2ymu_A 285 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSPDGQ--TI 359 (577)
T ss_dssp CEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECTTSS--EE
T ss_pred EEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEEECCCCC--EE
Confidence 9999996 46777888999999999999999999999999999999997654432 2357888999999999765 79
Q ss_pred EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984 167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN 245 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~ 245 (380)
++++.|+.|++||.. .+....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .|...+.+++|+|+
T Consensus 360 ~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 360 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp EEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC
Confidence 999999999999964 4566677889999999999999999999999999999996 45555554 57888999999998
Q ss_pred cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK 325 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 325 (380)
+.+.. ....++.+.+|+.. ++....+..|...|.+++|+|++++|++++.|++|++|+... .
T Consensus 438 ~~~l~------~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~---------- 499 (577)
T 2ymu_A 438 DQTIA------SASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---------- 499 (577)
T ss_dssp SSEEE------EEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C----------
T ss_pred CCEEE------EEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C----------
Confidence 76532 23356778999964 556667788889999999999999999999999999998421 1
Q ss_pred eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
.+..+ ..|...|.+++|+|||++||+++.||.|++||.
T Consensus 500 -~~~~~---------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 500 -LLQTL---------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp -EEEEE---------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred -EEEEE---------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 11111 235567889999999999999999999999985
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.7e-43 Score=304.44 Aligned_cols=297 Identities=27% Similarity=0.453 Sum_probs=243.2
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
...+..++.||.+.|++++|+|+ +++|++|+.||.|++|++.... ....+.+|...|.+++|+|++++|++++.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECC
Confidence 45688899999999999999997 6899999999999999976432 23456789999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
|+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+......... ..|...|.+++|+|++.
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~-- 162 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGS-- 162 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSS--
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCC--
Confidence 999999999999999999999999999999999999999999999999998776554443 47888999999999754
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEee-eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINH-SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS 243 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~ 243 (380)
+|++++.|+.|++||+++.+..... ..+...+..++|+|++++|++++.|+.|++||+.+++.+..+....
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 234 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-------- 234 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC--------
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC--------
Confidence 7999999999999999987765544 3456789999999999999999999999999999887654432100
Q ss_pred cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984 244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE 323 (380)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~ 323 (380)
.. ...+......+++++|++|+.||.|++||+..+.
T Consensus 235 -~~-----------------------------------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-------- 270 (312)
T 4ery_A 235 -NE-----------------------------------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE-------- 270 (312)
T ss_dssp -CS-----------------------------------SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--------
T ss_pred -Cc-----------------------------------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--------
Confidence 00 0001111223578899999999999999875433
Q ss_pred cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe--eCCeEEEEEee
Q psy6984 324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY--SDNTIRVWQVS 374 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~--~dg~v~iw~~~ 374 (380)
.+..+ ..|...+.+++|+|++++|++++ .|+.|++|+.+
T Consensus 271 ---~~~~~---------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 271 ---IVQKL---------QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EEEEE---------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhhh---------hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 22222 23556788999999999999887 69999999864
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-44 Score=317.48 Aligned_cols=291 Identities=17% Similarity=0.221 Sum_probs=223.3
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeC------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSR------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
..+|.+.|++++|+|+ +.+|++||. |++|++|+......... ......+|...|.+++|+|+++ +++++.|
T Consensus 38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNES-LCTAGVQTEAGVTDVAWVSEKG-ILVASDS 114 (357)
T ss_dssp --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGG-GCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCccee-EecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence 3579999999999998 789999997 77899998654322211 1223457888999999999975 5678889
Q ss_pred CcEEEEECCCCceee----eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 86 KTLRLWDLAAGKTTR----RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
|.|+|||+.+++... ...+|...|.+++|+|++++|++++.|+.|++||..+...... ..+|...|.+++|+|++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS-YNAHSSEVNCVAACPGK 193 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEccCC
Confidence 999999998876543 2347899999999999999999999999999999877655444 35799999999999976
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~ 238 (380)
.. ++++++.|+.|++||+++.+..... ..|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..
T Consensus 194 ~~-~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-------- 264 (357)
T 4g56_B 194 DT-IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-------- 264 (357)
T ss_dssp SS-CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------
T ss_pred Cc-eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------
Confidence 43 6889999999999999887655433 346678999999997 56899999999999999977643222
Q ss_pred EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceee
Q psy6984 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKF 317 (380)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~ 317 (380)
+..+...|.+++|+|++ ++|++|+.|++|++||+..+.
T Consensus 265 ---------------------------------------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-- 303 (357)
T 4g56_B 265 ---------------------------------------SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-- 303 (357)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--
T ss_pred ---------------------------------------EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--
Confidence 12334567889999987 579999999999999875432
Q ss_pred eEeecccceEEEeeCcccccccCCCCCCceEEEEEec-CCCEEEEEeeCCeEEEEEeee
Q psy6984 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST-DGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~g~~dg~v~iw~~~~ 375 (380)
.+.. ..|...|.+++|+| |+++|++|+.||.|++|++..
T Consensus 304 ---------~~~~----------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 304 ---------VFRD----------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ---------EEEE----------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ---------EeEE----------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 2211 13566789999998 799999999999999999854
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-43 Score=313.54 Aligned_cols=308 Identities=22% Similarity=0.400 Sum_probs=235.6
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccc-------------ccccCCCcceEEEEEcc
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ-------------KRLKGHSHFISDIVLSS 74 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~-------------~~~~~h~~~v~~~~~~~ 74 (380)
+...+ +|.+.|++++|+|+ +++|++|+ ++++++|++........+.. .....+...|.+++|+|
T Consensus 57 ~~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred eEEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 34344 69999999999998 68899877 68999999865432111100 00112334599999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 154 (380)
++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.+........ +...+.+
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~ 211 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT 211 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999988765544432 4567999
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984 155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 227 (380)
++++|.. ..+|++++.|+.|++||+++......+ .+|...|.+++|+|++++|++|+.|+.|++||+.+...
T Consensus 212 ~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 212 VAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999842 248999999999999999987665444 57889999999999999999999999999999976543
Q ss_pred EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
...... + ..+.....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 291 ~~~~~~----------~-------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 291 KSDSKT----------P-------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp ---------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred cccccC----------C-------------------------CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 211100 0 00111223445667799999999999999999999999
Q ss_pred EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec------CCCEEEEEeeCCeEEEEEeeee
Q psy6984 308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST------DGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
+||...+..+..+ ..|...|.+++|++ ++++|++|+.||.|+||++...
T Consensus 336 iwd~~~~~~~~~l--------------------~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 336 FWDKKSGNPLLML--------------------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTTCCEEEEE--------------------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEECCCCeEEEEE--------------------CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9987554332211 23455678888876 7889999999999999998754
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=319.39 Aligned_cols=347 Identities=14% Similarity=0.201 Sum_probs=269.2
Q ss_pred cCcccceEEEEeCCCCCC-eEEEeeCCCeEEEeec----CCCCC------Ccccccccc------cCCCcceEEEEEccC
Q psy6984 13 NGHNGWVTQIATNPKFPD-TILSCSRDNTLIIWKL----TRDDT------NYGVPQKRL------KGHSHFISDIVLSSD 75 (380)
Q Consensus 13 ~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~vw~~----~~~~~------~~~~~~~~~------~~h~~~v~~~~~~~~ 75 (380)
..|.+.|++++|+|+ +. +|++|+.||.|++|++ ..... ...+ ...+ .+|...|++++|+|+
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC
Confidence 346699999999998 56 9999999999999999 54331 1111 1112 236789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc----
Q psy6984 76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW---- 151 (380)
Q Consensus 76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~---- 151 (380)
+++|++++.||.|++|| .+++....+..|...|.+++|+|+++++++++.|+.+++||+.......... .+...
T Consensus 120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~ 197 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSI 197 (425)
T ss_dssp SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC-------
T ss_pred CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccce
Confidence 99999999999999999 6778888889999999999999999999999999999999987765544432 34443
Q ss_pred -----------EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984 152 -----------VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220 (380)
Q Consensus 152 -----------v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 220 (380)
+.++.|+|++ .+++++.++.|++||+++.+....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp --------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 7888998863 58899999999999999988877888899999999999999999999999999999
Q ss_pred ECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984 221 DLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299 (380)
Q Consensus 221 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 299 (380)
|+.+++.+..+. +...+..++|+|++ . +.....++.+.+|++..++....+..+...+.+++|+|++++|++
T Consensus 275 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQNCFYGHSQSIVSASWVGDD-K------VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp CSSSBSCSEEECCCSSCEEEEEEETTT-E------EEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred ECCCCccceEecCCCccEEEEEECCCC-E------EEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 999888777664 78889999999987 2 122335678999999999888888888889999999999999999
Q ss_pred eeCCCcEEEEecccceeeeE-eecccceEEEeeCcccccccCCCCCC--ceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 300 SSRDKTIKLWNTLAHCKFTI-VDLETKKMVEELRPDVVSQSTKADPP--MCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 300 ~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
++.||.|++|++........ ............... .......+.. .+.+++|+|+|++|++++.||.|++|++.
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP-LYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECC-EEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccch-hhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999865431100 000000000000000 0011123333 78999999999999999999999999974
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.2e-42 Score=301.24 Aligned_cols=323 Identities=19% Similarity=0.288 Sum_probs=267.4
Q ss_pred cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA 94 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 94 (380)
|.+.|.+++++|+ +.+++++..++.+..|..... .......+|...|.+++|+|++++|++++ |+.|++||+.
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCc-----cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 5678999999998 678888887777777754321 11223457999999999999999999999 9999999998
Q ss_pred CCceeee---ec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 95 AGKTTRR---FE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 95 ~~~~~~~---~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
+++.... +. .|...|.+++|+|+++.+++++.|+.|++||...... .......|...+.+++|+|++. ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~ 158 (337)
T 1gxr_A 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFS 158 (337)
T ss_dssp STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEE
T ss_pred CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC--EEEE
Confidence 7654332 22 6889999999999999999999999999999876542 2333456888899999999754 7899
Q ss_pred EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~ 248 (380)
++.|+.|++||+++.+....+.+|...+.+++|+|+++++++++.|+.|++||+++++.+..+.+...+..++|+|++.+
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE
Confidence 99999999999999888888888999999999999999999999999999999999999988889999999999999865
Q ss_pred ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 328 (380)
... ...++.+.+|+...++.. .+..+...+.+++|+|++++|++++.||.|++|++..+.....
T Consensus 239 l~~------~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--------- 302 (337)
T 1gxr_A 239 LAV------GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--------- 302 (337)
T ss_dssp EEE------EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------
T ss_pred EEE------EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE---------
Confidence 332 235678999999877643 5567788899999999999999999999999998755433211
Q ss_pred EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
..+...+.+++|+|++++|++++.||.|++|++-
T Consensus 303 ------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 303 ------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ------------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 0123457899999999999999999999999974
No 23
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=324.45 Aligned_cols=351 Identities=16% Similarity=0.189 Sum_probs=272.4
Q ss_pred cccceEEEEeCCCCCCeEEEe----------eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 15 HNGWVTQIATNPKFPDTILSC----------SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~----------~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
+...|++++|+|+...+|+++ +.||.|++|++...... .......|...|.+++|+|++++|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---KPIASLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---SCSCCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---cEEEEEecCCceEEEEECCCCCeEEEEcc
Confidence 346799999999854599999 89999999998754211 11223458889999999999999999999
Q ss_pred CCcEEEEECCC----CceeeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcc------eEEE--eeCCCcCc
Q psy6984 85 DKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHC------KFTI--VEDGHSDW 151 (380)
Q Consensus 85 d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~------~~~~--~~~~~~~~ 151 (380)
|+.|++||+.+ .+....+..|...|.+++|+|+ +.++++++.|+.|++||+.... .... ....|...
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 99999999987 4577888899999999999998 8999999999999999987654 2111 12468888
Q ss_pred EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC------ccceEEEEEcCCC-CEEEEEcCCC---cEEEEE
Q psy6984 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH------TGYLNTVTVSPDG-SLCASGGKDM---NAMLWD 221 (380)
Q Consensus 152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d 221 (380)
|.+++|+|++. .+|++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .++++++.|+ .|++||
T Consensus 168 v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 168 VISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred eeEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 99999999743 48999999999999999998877766655 7889999999997 6899999998 999999
Q ss_pred CCCC-cEEEEEE--ecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CE
Q psy6984 222 LNDG-KHLHTLV--HNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQ 296 (380)
Q Consensus 222 ~~~~-~~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 296 (380)
++++ ..+..+. |...+.+++|+| ++.+.. ....++.+.+|++..++....+..|...|.+++|+|++ ++
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~------s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL------SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE------EEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEE------EEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 9986 4555554 788999999999 655422 23346789999999998888888888999999999999 89
Q ss_pred EEEeeCCCcEEEEecccceeeeEeec---ccc---eEEEee--------Cccc-ccccCCCCCCceEEEEEecCCCEEEE
Q psy6984 297 IVSSSRDKTIKLWNTLAHCKFTIVDL---ETK---KMVEEL--------RPDV-VSQSTKADPPMCLSLAWSTDGQTLFA 361 (380)
Q Consensus 297 l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~---~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (380)
|++++.||.|++|++........... ... ...... +... .......+...+..++|+|||++|++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 99999999999999865432211100 000 000000 0000 00111224555678999999999999
Q ss_pred EeeCCeEEEEEeee
Q psy6984 362 GYSDNTIRVWQVSV 375 (380)
Q Consensus 362 g~~dg~v~iw~~~~ 375 (380)
|+.||.|+||++.+
T Consensus 401 ~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 401 TPDGKGVSITNPKI 414 (416)
T ss_dssp CTTSSCBCCBCCCC
T ss_pred eCCCCeEEEEEecc
Confidence 99999999999875
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.4e-42 Score=307.24 Aligned_cols=336 Identities=15% Similarity=0.197 Sum_probs=253.8
Q ss_pred CcceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc-cccccccCCCcceEEEEEccC----
Q psy6984 1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG-VPQKRLKGHSHFISDIVLSSD---- 75 (380)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~---- 75 (380)
|......+...+.+|.+.|++++|+| ++|++|+.||+|++|++........ .....+.+|...|.+++|+|+
T Consensus 1 m~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 1 MSKVFIATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp --CEEEEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred CchhhhhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence 66667788899999999999999987 5899999999999999876431111 123456789999999999999
Q ss_pred C---CEEEEEeCCCcEEEEECCCCce-----eeeeccc-----CCCeEEEEEe----CCCCE-EEEEeCCCcEEEEeCCC
Q psy6984 76 G---NYALSGSWDKTLRLWDLAAGKT-----TRRFEDH-----TKDVLSVAFS----VDNRQ-IVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 76 ~---~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~-~~s~~~d~~v~iwd~~~ 137 (380)
+ ++|++++.|+.|++||+.+++. ...+..| ...|.+++|+ |++.. +++++.|+.|++||+..
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9 9999999999999999998886 7888888 5899999999 99999 99999999999999876
Q ss_pred ------cceE------EEee-----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC---C---cc
Q psy6984 138 ------HCKF------TIVE-----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG---H---TG 194 (380)
Q Consensus 138 ------~~~~------~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~---~~ 194 (380)
.... .... ..|...+.+++|+|++ +|++++.|+.|++||+++.+....+.. | ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 3322 2221 4578889999999975 799999999999999999888888888 8 89
Q ss_pred ceEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984 195 YLNTVTVSPDGSLCASGGKD---MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH 271 (380)
Q Consensus 195 ~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (380)
.|.+++|+|++++|++++.| +.|++||+.+++.+..+..... +.
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------~~-------------------------- 281 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------SS-------------------------- 281 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------------------
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc-------cc--------------------------
Confidence 99999999999999999999 9999999998876654422100 00
Q ss_pred ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEE-eeCcccccccCCCCCCceEEE
Q psy6984 272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE-ELRPDVVSQSTKADPPMCLSL 350 (380)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 350 (380)
......+.+...|.+++|+|++++|++++.||.|++||+..+..+..+......... .............|...|.++
T Consensus 282 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 282 -QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred -cccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 000011234567899999999999999999999999998766544433210000000 000000000011236778999
Q ss_pred EEecCC----------CEEEEEeeCCeEEEEEeeee
Q psy6984 351 AWSTDG----------QTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 351 ~~s~dg----------~~l~~g~~dg~v~iw~~~~~ 376 (380)
+|+|+| ++|++|+.||.|++|++..+
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999 79999999999999998643
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-41 Score=303.42 Aligned_cols=313 Identities=17% Similarity=0.245 Sum_probs=236.9
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEE
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSG 82 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 82 (380)
+..++...+.+|.+.|++++|+|+.+.+|++|+.||.|++|++...... ......+|...|.+++|+| ++++|+++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 4567888999999999999999984489999999999999998754322 1223357999999999999 78999999
Q ss_pred eCCCcEEEEECCCCceeeeecc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984 83 SWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 83 ~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (380)
+.|+.|++||+.+ +....+.. |...|.+++|+|+++.+++++.|+.|++||+... .... ..+|...|.+++|+|
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~-~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-EIFK-EKLHKAKVTHAEFNP 214 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-EEEE-EECSSSCEEEEEECS
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-EEEE-eccCCCcEEEEEECC
Confidence 9999999999986 44444443 3478999999999999999999999999998533 3322 347889999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCC----ceeeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984 160 NHQNPIIVSAGWDRMVKVWNLTN----CKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHN 234 (380)
Q Consensus 160 ~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 234 (380)
+++. +|++++.|+.|++||+++ ....... +|...|.+++|+| ++++|++++.|+.|++||+++++....+...
T Consensus 215 ~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 215 RCDW-LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SCTT-EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 7643 799999999999999987 4444434 6899999999999 9999999999999999999887654333211
Q ss_pred CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 314 (380)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 314 (380)
. ...+. +.......+.....+..++|+|++++ +|+.||.|++||+..+
T Consensus 293 ~---------~~~~~---------------------~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 293 P---------HRQFQ---------------------HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp C---------BCCCT---------------------TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred c---------ccccc---------------------cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 0 00000 00000001112234567889999998 8999999999987554
Q ss_pred eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
..+.. +.. ..+...+..++|+|+|++|++|+ ||.|+||++..
T Consensus 341 ~~~~~-----------l~~-------~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 GLVHQ-----------LRD-------PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEE-----------ECB-------TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceeee-----------ecC-------CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 43222 211 11233455679999999999996 99999999864
No 26
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=332.16 Aligned_cols=346 Identities=9% Similarity=0.086 Sum_probs=255.6
Q ss_pred EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 90 (380)
...||.+.|++++|+|+ +.+||+|+.||+|++|+..... ......|...|.+++|+| +++|++++.|+.|++
T Consensus 12 ~~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~------~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVE------VVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp EEEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCE------EEEECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred cccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcE------EEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 34589999999999998 6899999999999999865321 111234778899999999 889999999999999
Q ss_pred EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE----------eeCCCcCcEEEEEEccC
Q psy6984 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI----------VEDGHSDWVSCVRFSPN 160 (380)
Q Consensus 91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~----------~~~~~~~~v~~~~~~~~ 160 (380)
||+.+++.+..+. |...|.+++|+|+++++++|+.||.|++||+........ ...+|...|.+++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 9999999888875 668899999999999999999999999999876543211 12568889999999996
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC------------------ccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH------------------TGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
.. ..+++++.|+.| +||+++.+....+..| ...|++++|+|+|++|++++.|+.|++||+
T Consensus 163 ~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 163 DI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp EE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 42 368899999999 9999998776665544 467999999999999999999999999999
Q ss_pred CCCcEEEE--EE-----------------ecCceEEEEeecC----ccc-ceee-------------eee----------
Q psy6984 223 NDGKHLHT--LV-----------------HNDIITALCFSPN----RSF-QKIK-------------LDI---------- 255 (380)
Q Consensus 223 ~~~~~~~~--~~-----------------~~~~i~~~~~~~~----~~~-~~~~-------------~~~---------- 255 (380)
++++.+.. +. +...|.+++|++. +.. .... ...
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 99887653 21 2346889999642 111 0000 000
Q ss_pred -----------------------------------------------eeeccccceEEEEcCCceeeee-------ee--
Q psy6984 256 -----------------------------------------------SRTLQKSNLILYPINHGKMETP-------FF-- 279 (380)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~-- 279 (380)
.....++.+.+|++..+..... +.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 0001124567777655532111 11
Q ss_pred --------------------------------ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceE
Q psy6984 280 --------------------------------SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM 327 (380)
Q Consensus 280 --------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 327 (380)
++...+.+++|+|++++|+||+.|++|++||+..+.. .+...
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~------~~~~~ 474 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI------QDNAS 474 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT------TTTBC
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc------cCCce
Confidence 1222344456688999999999999999999865421 10000
Q ss_pred EEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
.. . +........|...|.+++|+|||++||+|+.||+|++|++...
T Consensus 475 ~~-~--~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 475 FE-V--NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp EE-E--EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred EE-e--echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence 00 0 0000011256678999999999999999999999999999754
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.3e-41 Score=341.67 Aligned_cols=358 Identities=21% Similarity=0.347 Sum_probs=283.5
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL 88 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 88 (380)
...+.+|.+.|++++|+|+ +.++++|+.||+|++|++.... ....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681 (1249)
T ss_dssp SEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE
Confidence 3467899999999999998 7899999999999999986543 234567999999999999999999999999999
Q ss_pred EEEECCCCceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 89 RLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
++||+.+++.+..+..|...|.+++|+| ++..+++++.|+.|++||+.+....... .+|...|.+++|+|+++ .+
T Consensus 682 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~--~l 758 (1249)
T 3sfz_A 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDE--LL 758 (1249)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTT--EE
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCC--EE
Confidence 9999999999999999999999999999 5568999999999999998876655443 47999999999999764 79
Q ss_pred EEEeCCCeEEEEeCCCceeeEe-------------------------------------------------------eeC
Q psy6984 167 VSAGWDRMVKVWNLTNCKLKIN-------------------------------------------------------HSG 191 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~~~~~~~~-------------------------------------------------------~~~ 191 (380)
++++.|+.|++||+.+.+.... ..+
T Consensus 759 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 759 ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS
T ss_pred EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC
Confidence 9999999999999875432211 126
Q ss_pred CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeee----------------
Q psy6984 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLD---------------- 254 (380)
Q Consensus 192 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~---------------- 254 (380)
|...+.+++|+|+++++++++.|+.|++||+.++..+..+ .|...+.+++|+|++........
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence 7788999999999999999999999999999999887766 47788999999998654221100
Q ss_pred ---------------------------------------------------------eeeeccccceEEEEcCCceeeee
Q psy6984 255 ---------------------------------------------------------ISRTLQKSNLILYPINHGKMETP 277 (380)
Q Consensus 255 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 277 (380)
+.....++.+.+|+...++....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~ 998 (1249)
T 3sfz_A 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998 (1249)
T ss_dssp SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE
T ss_pred eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee
Confidence 01112345677788777777777
Q ss_pred eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc--------------------cceEEEeeCccccc
Q psy6984 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE--------------------TKKMVEELRPDVVS 337 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 337 (380)
+..|...|.+++|+|++++|++++.||.|++|+...+......... ..-.+.........
T Consensus 999 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 7788889999999999999999999999999998765432211000 00001111111111
Q ss_pred ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 338 QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 338 ~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
.....+...+.+++|+|||++|++++.||.|++|++..
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSS
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 12234667788999999999999999999999999754
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-40 Score=325.89 Aligned_cols=354 Identities=20% Similarity=0.281 Sum_probs=279.3
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
+++...+.+|.+.|++++|+|+ +.+|++++.||.|++|++.... ....+.+|...|.+++|+|++++|++++.|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence 3467889999999999999998 6899999999999999976432 234567899999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc-CCCCC
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNP 164 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 164 (380)
|.|++||+.+++....+..|...|.+++|+|++..+++++.|+.|++||+...........+|...|.+++|+| ++ .
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~ 154 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--S 154 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE--E
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC--C
Confidence 99999999999999999999999999999999999999999999999998776454455567889999999999 43 3
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEeeeCC-ccceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINHSGH-TGYLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL 240 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~ 240 (380)
.|++++.|+.|++||+.+.........+ ...+..++|+| +++++++++.|+.|++||+.+++.+..+. |...+..+
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 7899999999999999877665555544 47899999999 99999999999999999999998887775 77889999
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE-EEEeeCCCcEEEEecccceeeeE
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTI 319 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~ 319 (380)
+|+|++.+.. ....++.+.+|+...++....+..+...+++++|+|+++. +++++.|+.+.+|+.........
T Consensus 235 ~~~~~~~~l~------~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (814)
T 3mkq_A 235 VFHPTLPIII------SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308 (814)
T ss_dssp EECSSSSEEE------EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEE
T ss_pred EEcCCCCEEE------EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeE
Confidence 9999987432 2335688999999998888888788889999999999873 24445577788898754433222
Q ss_pred eecccceEEEe-------------e------Ccc----cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 320 VDLETKKMVEE-------------L------RPD----VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 320 ~~~~~~~~~~~-------------~------~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
+.......... . ... ........+...+.+++|+|+|++|++++ ||.+.+|++.
T Consensus 309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 22111111100 0 000 00000122333456788888888888776 8888888753
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.8e-41 Score=302.85 Aligned_cols=330 Identities=13% Similarity=0.118 Sum_probs=255.7
Q ss_pred eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT 98 (380)
Q Consensus 19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 98 (380)
+++++|+|+ +++|++++.||.+++|++..... ...+..| ..+....+++++++|++|+.|+.|++||+.+++.
T Consensus 59 ~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 59 GKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDG-----SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CTTCEEEEE-ETTEEEEEETTEEEEEECCSEET-----TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred ccceeeeec-CCeEEEEEcCCcEEEEEecccce-----eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 447889997 68999999999999999764322 2223444 4455567899999999999999999999999988
Q ss_pred eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984 99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178 (380)
Q Consensus 99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 178 (380)
...+..|...|.+++|+|+++++++++.|+.|++||+........+ .+|...|.+++|+|++. +|++++.|+.|++|
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGR--NVLSASLDGTIRLW 208 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEe
Confidence 8888899999999999999999999999999999998776554444 47899999999999754 79999999999999
Q ss_pred eCCCceeeEeeeC---CccceEE---------------------EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE--
Q psy6984 179 NLTNCKLKINHSG---HTGYLNT---------------------VTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-- 232 (380)
Q Consensus 179 d~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-- 232 (380)
|+++.+....+.. |...+.+ ++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 9998877766653 3334444 4457899999999999999999999998877764
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee-eeeeec-cccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-ETPFFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
+...+.+++|+|++... +.....++.+.+|++..++. ...+.. +...+.++ +.+++++|++++.||.|++|+
T Consensus 289 ~~~~v~~~~~~~~~~~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANY-----IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp TSSCEEEEEECSSCTTE-----EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEE
T ss_pred cCCCceeEEEeCCCCCE-----EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEe
Confidence 56789999999997621 22233568899999988653 444555 44556666 567889999999999999999
Q ss_pred cccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC---EEEEEeeCCeEEEEEeee
Q psy6984 311 TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ---TLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~g~~dg~v~iw~~~~ 375 (380)
+........ +...... .....+...+.+++|+|+++ .|++.+.+|.+.+|+++-
T Consensus 363 ~~~~~~~~~--------~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 363 ISDPESERP--------AIEFETP---TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECCTTCCSC--------EECTTSC---EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCCCCcc--------ceeccCc---cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 754321110 1101100 01123455678999999999 777777899999999864
No 30
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-41 Score=304.45 Aligned_cols=254 Identities=25% Similarity=0.471 Sum_probs=222.1
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
++.++..++.+|.+.|++++|+|+ +++|++|+.||+|++||+.... ....+.+|...|.+++|+|++++|++|+
T Consensus 138 ~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 138 ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 344567889999999999999997 6899999999999999986432 2345679999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC-
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ- 162 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 162 (380)
.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+........ ..+|...|.+++|+|+..
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSY 290 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGG
T ss_pred CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-ecCCCceEEEEEEcCcccc
Confidence 999999999999999999999999999999999999999999999999999877655443 357889999999998632
Q ss_pred -----------------CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984 163 -----------------NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225 (380)
Q Consensus 163 -----------------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 225 (380)
..+|++|+.|+.|++||++++.....+.+|...|.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 458999999999999999999888888999999999999999999999999999999998765
Q ss_pred cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984 226 KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT 305 (380)
Q Consensus 226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 305 (380)
+.+.. +..|...|++++|+|++++|++|+.||+
T Consensus 371 ~~~~~-----------------------------------------------~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 371 RCMKT-----------------------------------------------LNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp CCCEE-----------------------------------------------EECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred ceEEE-----------------------------------------------EcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 43222 1234456889999999999999999999
Q ss_pred EEEEec
Q psy6984 306 IKLWNT 311 (380)
Q Consensus 306 v~iw~~ 311 (380)
|++|+.
T Consensus 404 i~vW~~ 409 (410)
T 1vyh_C 404 VKVWEC 409 (410)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999974
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-41 Score=292.31 Aligned_cols=251 Identities=23% Similarity=0.406 Sum_probs=220.6
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
...+...+.||...|++++++|+ ..++++++.|++|++||+.... ....+..|...+.+++|+|++++|++|+.
T Consensus 69 ~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 69 RLDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp EEEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEECTTSSEEEEECT
T ss_pred CeeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 34566789999999999999998 6799999999999999986532 23345677788999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
|+.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+...... ..+|...|.+++|+|+++
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spd~~-- 219 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQ-- 219 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCCCEEEECTTSC--
T ss_pred CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcccCCceeEEEEcCCCC--
Confidence 99999999999999998999999999999999999999999999999999887655444 357888999999999764
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP 244 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~ 244 (380)
+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~------------- 286 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF------------- 286 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-------------
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-------------
Confidence 7999999999999999998888888999999999999999999999999999999999887654332
Q ss_pred CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
..|...|++++|+|++++|++++.||+|++||.
T Consensus 287 ----------------------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 287 ----------------------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 233456788999999999999999999999984
No 32
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-42 Score=311.29 Aligned_cols=340 Identities=12% Similarity=0.172 Sum_probs=251.3
Q ss_pred eeEEeEEe-cCcccceEEEEeCC-CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984 5 TLQLRGTL-NGHNGWVTQIATNP-KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 5 ~~~~~~~~-~~h~~~v~~i~~~~-~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 82 (380)
+.++..++ .+|.+.|++++|+| + +.+|++|+.||+|++|++...............+|...|.+++|+|++++|++|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 45677788 89999999999999 6 789999999999999998641111001111122689999999999999999999
Q ss_pred eCCCcEEEEECC---CCceeeeecc------------cCCCeEEEE--EeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 83 SWDKTLRLWDLA---AGKTTRRFED------------HTKDVLSVA--FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 83 ~~d~~i~vwd~~---~~~~~~~~~~------------h~~~v~~~~--~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
+.|+.|++||+. +++....... +...+.++. +++++..+++++.|+.|++||+........+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999994 4544433321 455677777 56889999999999999999998776655554
Q ss_pred CC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEc----CCCCEEEEEcCCCcEEE
Q psy6984 146 DG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVS----PDGSLCASGGKDMNAML 219 (380)
Q Consensus 146 ~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~d~~i~i 219 (380)
.. |...|.+++|+|++ .+|++++.|+.|++||+++.+....+. .|...|.+++++ |++++|++++.|+.|++
T Consensus 210 ~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 210 NSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp CCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred cCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 32 78899999999975 479999999999999999988776654 677889999665 56889999999999999
Q ss_pred EECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec--cccceeEEEEeecCCE
Q psy6984 220 WDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS--LFRDVLSVAFSVDNRQ 296 (380)
Q Consensus 220 ~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~ 296 (380)
||+++++.+..+. +...+..+.|+|++.... ...+.+ +...|.+++|+ ++++
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE------------------------ELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGG------------------------GCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccc------------------------cceecccccCCceEEEEEC-CceE
Confidence 9999998877764 455566666666543210 001222 56679999999 8899
Q ss_pred EEEeeCCCcEEEEecccceeeeEeecccce--------------E-EEe--eCcccccccCCCCCCceEEEEEecC--CC
Q psy6984 297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKK--------------M-VEE--LRPDVVSQSTKADPPMCLSLAWSTD--GQ 357 (380)
Q Consensus 297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--------------~-~~~--~~~~~~~~~~~~~~~~~~~~~~s~d--g~ 357 (380)
|++|+.||.|++||+..+.....+...... . ... ............|...|.+++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 999999999999998776654433221000 0 000 0000000112347788999999998 78
Q ss_pred EEEEEeeCCeEEEEE
Q psy6984 358 TLFAGYSDNTIRVWQ 372 (380)
Q Consensus 358 ~l~~g~~dg~v~iw~ 372 (380)
+|++|+.||.|+||+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999995
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-41 Score=294.77 Aligned_cols=247 Identities=19% Similarity=0.243 Sum_probs=204.3
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 93 (380)
.|...|++++|+|+ ..|++|+.||+|++||+....... .......+|...|++++|+|+|++|++|+.|+.|++||+
T Consensus 80 ~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~-~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 80 QTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCcee-EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 45678999999986 489999999999999987643221 112235689999999999999999999999999999999
Q ss_pred CCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984 94 AAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIVSAGW 171 (380)
Q Consensus 94 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~ 171 (380)
.+++.+..+.+|...|.+++|+|++. .+++++.|++|++||+........+ ...+...+.+++|+|.+. .+|++|+.
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~sg~~ 235 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS-EVFVFGDE 235 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT-TEEEEEET
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC-cceEEecc
Confidence 99999999999999999999999885 7899999999999998876554443 234556789999999654 47899999
Q ss_pred CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccce
Q psy6984 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK 250 (380)
Q Consensus 172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 250 (380)
|+.|++||+++.+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++....
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-------------------- 295 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-------------------- 295 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--------------------
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--------------------
Confidence 9999999999999888899999999999999998 5799999999999999877643211
Q ss_pred eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEecc
Q psy6984 251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~ 312 (380)
.+|...|.+++|+|+++ +|+||+.||+|++|++.
T Consensus 296 ----------------------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 296 ----------------------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ----------------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ----------------------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 23455688899999886 56799999999999863
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-40 Score=287.78 Aligned_cols=248 Identities=23% Similarity=0.366 Sum_probs=207.9
Q ss_pred ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~ 137 (380)
..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.|++||..+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcC-CCCEEEEEcCCC
Q psy6984 138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSP-DGSLCASGGKDM 215 (380)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 215 (380)
......+ .+|...|.+++|+|+++ +|++++.|++|++||+++. .....+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 87 ~~~~~~~-~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 87 GEKVVDF-EAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp CCEEEEE-ECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CcEEEEE-eCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 6655444 47999999999999754 7999999999999999876 44556788999999999999 678999999999
Q ss_pred cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee--c
Q psy6984 216 NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV--D 293 (380)
Q Consensus 216 ~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 293 (380)
.|++||+..+.....+. ..+...+..++|+| +
T Consensus 164 ~v~iwd~~~~~~~~~~~----------------------------------------------~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLT----------------------------------------------TGQERGVNYVDYYPLPD 197 (304)
T ss_dssp EEEEEETTCSSCSEEEE----------------------------------------------CCCTTCEEEEEECCSTT
T ss_pred eEEEEECCCCCccceec----------------------------------------------cCCcCcEEEEEEEEcCC
Confidence 99999987654221111 01123455667765 7
Q ss_pred CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
+++|++|+.|++|++||+..+..+. .+ ..|...+..++|+|++++|++|+.||.|++||+
T Consensus 198 ~~~l~s~s~D~~i~iWd~~~~~~~~-----------~~---------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQTKSCVA-----------TL---------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEE-----------EE---------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCeEEEEeCCCCccce-----------ee---------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 7899999999999999875543222 11 234556889999999999999999999999997
Q ss_pred e
Q psy6984 374 S 374 (380)
Q Consensus 374 ~ 374 (380)
.
T Consensus 258 ~ 258 (304)
T 2ynn_A 258 S 258 (304)
T ss_dssp T
T ss_pred C
Confidence 5
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.8e-41 Score=340.58 Aligned_cols=338 Identities=24% Similarity=0.364 Sum_probs=279.6
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEE
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALS 81 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s 81 (380)
.+.+...++.+|.+.|++++|+|+ +++|++++.||+|++||+.... ....+.+|...|.++.|+| ++.++++
T Consensus 645 ~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 645 ETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred CCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCc-----eEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 445677889999999999999998 6899999999999999987542 2345678999999999999 5568999
Q ss_pred EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE-------------------
Q psy6984 82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT------------------- 142 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~------------------- 142 (380)
|+.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.......
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999964321110
Q ss_pred -----------------------------------------------------------------------------Eee
Q psy6984 143 -----------------------------------------------------------------------------IVE 145 (380)
Q Consensus 143 -----------------------------------------------------------------------------~~~ 145 (380)
...
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 011
Q ss_pred CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-------------------------------------------
Q psy6984 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN------------------------------------------- 182 (380)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~------------------------------------------- 182 (380)
.+|...|.+++|+|++. .+++++.|+.|++||+.+
T Consensus 879 ~~h~~~v~~v~~spdg~--~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGS--SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp CCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred CCCccceEEEEECCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 35667788888888654 688888888888888431
Q ss_pred ------------------------------------ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984 183 ------------------------------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK 226 (380)
Q Consensus 183 ------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 226 (380)
.+......+|...|.+++|+|+|+++++++.|+.|++||+.+++
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 11222334688889999999999999999999999999999998
Q ss_pred EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI 306 (380)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 306 (380)
......+...+.+++++|++.+. ....++.+.+|++.+++....+..|...|.+++|+|++++|++++.||+|
T Consensus 1037 ~~~~~~~~~~v~~~~~~~~~~l~-------~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A 1037 YVFLQAHQETVKDFRLLQDSRLL-------SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109 (1249)
T ss_dssp EECCBCCSSCEEEEEECSSSEEE-------EEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC
T ss_pred eEEEecCCCcEEEEEEcCCCcEE-------EEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 88777788999999999976532 22356789999999999888888899999999999999999999999999
Q ss_pred EEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
++|+...+... . ....|...+.+++|+|||++|++|+.||.|++|++...
T Consensus 1110 ~iwd~~~~~~~-----------~---------~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1110 KIWSFDLLSPL-----------H---------ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CEECSSSSSCS-----------B---------CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred EEEECCCccee-----------e---------eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99986433211 1 12345667899999999999999999999999998643
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=287.68 Aligned_cols=298 Identities=19% Similarity=0.250 Sum_probs=252.5
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT 87 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 87 (380)
....|.+|.+.|++++|+|+ +++|++++.||.|++|++.... ....+.+|...|.+++|+|++++|++++.|+.
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred ccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 44678999999999999997 7899999999999999986532 23457789999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcce---E-------EEeeCCCcC--
Q psy6984 88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCK---F-------TIVEDGHSD-- 150 (380)
Q Consensus 88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~---~-------~~~~~~~~~-- 150 (380)
|++||+.+++....+. +...+.+++|+|++..+++++.+ +.+++||+..... . ......|..
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 9999999999888887 88899999999999999999999 9999999643321 0 011113333
Q ss_pred cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH 229 (380)
Q Consensus 151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 229 (380)
.+.+++|+|++. +|++++.|+.|++||+++ .+....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 177 ~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGK--YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGC--EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCC--EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 799999999764 789999999999999998 67777788899999999999999999999999999999999999999
Q ss_pred EEEecCceEEEEeecCcccceeeeeee--------eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee
Q psy6984 230 TLVHNDIITALCFSPNRSFQKIKLDIS--------RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS 301 (380)
Q Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 301 (380)
.+.+...+..++|+|++.+........ .......+.+|+...++....+..|...|.+++|+|++++|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence 999999999999999987654432110 011122688999999988888888999999999999999999999
Q ss_pred CCCcEEEEecccc
Q psy6984 302 RDKTIKLWNTLAH 314 (380)
Q Consensus 302 ~dg~v~iw~~~~~ 314 (380)
.||.|++|++..+
T Consensus 335 ~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 335 EDGFIRLHHFEKS 347 (369)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCeEEEEECccc
Confidence 9999999987543
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-39 Score=308.93 Aligned_cols=333 Identities=16% Similarity=0.266 Sum_probs=257.2
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccC-CCEEEEE
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSD-GNYALSG 82 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~ 82 (380)
+....+.+|.+.|+++.|+|+.+.++++++.||.|++||+.... ....+.+|.. .|.+++|+|+ +++|+++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 35678889999999999999854589999999999999975432 2345678888 9999999999 9999999
Q ss_pred eCCCcEEEEECCCCceeeee-c---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC---CcCcEEEE
Q psy6984 83 SWDKTLRLWDLAAGKTTRRF-E---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG---HSDWVSCV 155 (380)
Q Consensus 83 ~~d~~i~vwd~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~ 155 (380)
+.|+.|++||+.+++.+..+ . .|...|.+++|+ ++..+++++.|+.+++||+............ +...+.++
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 99999999999999999988 6 899999999999 9999999999999999998876555444322 24567777
Q ss_pred EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC-------------------------------
Q psy6984 156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD------------------------------- 204 (380)
Q Consensus 156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------- 204 (380)
.+. + ...+++++.|+.|++||+.+.+....+.+|...|.+++| |+
T Consensus 305 ~~~-~--~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VAT-G--NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEE-E--TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeC-C--CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 775 3 347899999999999999876665555555544444443 22
Q ss_pred --CC-------------------------------------------------------------------------EEE
Q psy6984 205 --GS-------------------------------------------------------------------------LCA 209 (380)
Q Consensus 205 --~~-------------------------------------------------------------------------~l~ 209 (380)
+. +++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 460 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA 460 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEE
Confidence 33 344
Q ss_pred EEcC-CCcEEEEECCCCcEE-EEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccce
Q psy6984 210 SGGK-DMNAMLWDLNDGKHL-HTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDV 285 (380)
Q Consensus 210 ~~~~-d~~i~i~d~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 285 (380)
+++. |+.|++||+..++.. ..+ .+...+.+++|+|++.+.. ....++.+.+|++..++....+.. |...|
T Consensus 461 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~------~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 534 (615)
T 1pgu_A 461 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA------AGDVMGKILLYDLQSREVKTSRWAFRTSKI 534 (615)
T ss_dssp EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE------EEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEE------EcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence 4444 555555555444332 111 3567788888988876533 233578899999999988887777 88899
Q ss_pred eEEEEee----------cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC
Q psy6984 286 LSVAFSV----------DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD 355 (380)
Q Consensus 286 ~~~~~s~----------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 355 (380)
.+++|+| ++++|++++.||.|++|++..+. +.+.. ...|...|.+++|+|+
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~---------~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----------KIIKA---------LNAHKDGVNNLLWETP 595 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----------CCEEE---------TTSSTTCEEEEEEEET
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc----------eechh---------hhcCccceEEEEEcCC
Confidence 9999999 99999999999999999875431 11111 2345667899999999
Q ss_pred CCEEEEEeeCCeEEEEEeee
Q psy6984 356 GQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 356 g~~l~~g~~dg~v~iw~~~~ 375 (380)
|+ |++++.||.|++|++.+
T Consensus 596 ~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTSCEEEEEEC-
T ss_pred CC-eEEecCCceEEEEeeec
Confidence 99 99999999999999864
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-42 Score=310.74 Aligned_cols=312 Identities=18% Similarity=0.205 Sum_probs=225.6
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCC
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDK 86 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~ 86 (380)
+.....+|...|++|+|+|..+++||+|+.||+|+|||+...... ....+.+|...|++++|+| ++++|++|+.||
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 445667899999999999977889999999999999998654321 2234678999999999998 789999999999
Q ss_pred cEEEEECCCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 87 TLRLWDLAAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
.|++||++++........ +...+.+++|+|++.++++|+.|+.|++||+..... ....+|...|.+++|+|++. .
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--~~~~~h~~~v~~v~~~p~~~-~ 264 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--WNLRMHKKKVTHVALNPCCD-W 264 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--CCSBCCSSCEEEEEECTTCS-S
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--EEEecccceEEeeeecCCCc-e
Confidence 999999987654443333 334578999999999999999999999999865432 22357899999999999865 3
Q ss_pred EEEEEeCCCeEEEEeCCCceee---EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL 240 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~ 240 (380)
+|++++.|+.|++||+++.+.. ....+|...|++++|+|+|++|++++.|+.|++||+.+++....+. +...
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---- 340 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR---- 340 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC----
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc----
Confidence 7889999999999999875432 2335788999999999999999999999999999998876544432 1100
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeE
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTI 319 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~ 319 (380)
..... ......+........+.+++++..++.++ .++.|++||...+..
T Consensus 341 ------~~~~~---------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--- 390 (435)
T 4e54_B 341 ------HFQHL---------------------TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--- 390 (435)
T ss_dssp ------CCSSS---------------------CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE---
T ss_pred ------ccccc---------------------eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE---
Confidence 00000 00000011112233455566666555444 446799998654432
Q ss_pred eecccceEEEeeCcccccccCCCCCCceEEE-EEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 320 VDLETKKMVEELRPDVVSQSTKADPPMCLSL-AWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
+..+. ..+...|.++ +|+|+|++|++|+ |+.|+||++..+
T Consensus 391 --------~~~l~--------~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 391 --------MCQLY--------DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp --------EEEEC--------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred --------EEEEe--------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 22111 1233345555 6999999999876 889999998654
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-40 Score=294.85 Aligned_cols=313 Identities=16% Similarity=0.208 Sum_probs=237.9
Q ss_pred EecCcccceEEEEeCCC---CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC----CCEEEEEe
Q psy6984 11 TLNGHNGWVTQIATNPK---FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD----GNYALSGS 83 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~ 83 (380)
...+|.+.|++++|+|. ....+++++.++.|++|++........+.......|...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44599999999999983 345677777778999999875432221211122347788999999999 67999999
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEee--CCCcCcEEEEEEccC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPN 160 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~ 160 (380)
.||.|++||+.+++.+..+..|...|.+++|+| ++..+++++.|+.|++||+.......... .+|...|.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999999999999999999999999999 99999999999999999988766555442 578899999999997
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeeEee----------------------------eCCccceEEEEEcCCCCEEEEEc
Q psy6984 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINH----------------------------SGHTGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----------------------------~~~~~~i~~~~~~~~~~~l~~~~ 212 (380)
+. +|++++.|+.|++||+++.+....+ .+|...|.+++|+ ++++++++
T Consensus 173 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 173 GE--KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp SS--EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CC--EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 54 7999999999999999875433222 2388899999998 77999999
Q ss_pred CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
.|+.|++||+.+++...... .+. .. .......+..+...|.+++|+|
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~----------~~~---------------~~--------~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKI----------KPS---------------ES--------NVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGC----------CTT---------------CC--------CEEEEEEEECSSCCSSCCCCEE
T ss_pred cCCEEEEEeCCCcccccccc----------ccC---------------Cc--------chheeccccccCCcEEEEEEcC
Confidence 99999999987654210000 000 00 0011223445566788999999
Q ss_pred c--CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEE
Q psy6984 293 D--NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRV 370 (380)
Q Consensus 293 ~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~i 370 (380)
+ +++|++|+.||.|++|++..+.... .....+. ...+...+.+++|+|+|++|++|+.||.|++
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHK-------AKCTTLT-------HHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGG-------CEEEEEC-------CTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCcc-------ccceEEc-------ccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 9 9999999999999999975432110 0111111 1122567899999999999999999999999
Q ss_pred EEee
Q psy6984 371 WQVS 374 (380)
Q Consensus 371 w~~~ 374 (380)
||+.
T Consensus 362 wd~~ 365 (366)
T 3k26_A 362 WDRL 365 (366)
T ss_dssp EEC-
T ss_pred EEec
Confidence 9974
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=294.83 Aligned_cols=319 Identities=16% Similarity=0.173 Sum_probs=234.5
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeC---CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC---CCEEEE
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSR---DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD---GNYALS 81 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s 81 (380)
+...+.+|.+.|++++|+|+...++++++. ||.|++|++..... ......+|...|.+++|+|+ +++|++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----KLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----EEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----cceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 345567899999999999985456667776 99999999875431 11223478889999999998 699999
Q ss_pred EeCCCcEEEEECCCCc-eeeeecccCCCeEEEEE------eCCCCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCC----c
Q psy6984 82 GSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAF------SVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGH----S 149 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~----~ 149 (380)
|+.|+.|++||+.+++ ....+..|...|.+++| +|+++.+++++.|+.|++||+.... ...... .| .
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~ 164 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENK 164 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCC
Confidence 9999999999999888 88888999999999954 6899999999999999999987654 233322 22 3
Q ss_pred CcEEEEE----EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC---CCCEEEEEcCCCcEEEEEC
Q psy6984 150 DWVSCVR----FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP---DGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 150 ~~v~~~~----~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~ 222 (380)
..+.+++ |+|++ .++++++.|+.|++||+++.+... ...|...+.+++|+| +++++++++.|+.|++||+
T Consensus 165 ~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 3788888 45554 489999999999999999887643 456788999999999 9999999999999999997
Q ss_pred CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEee
Q psy6984 223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSS 301 (380)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~ 301 (380)
++++....+. ...+..+...|.+++|+|+++ +|++|+
T Consensus 242 ~~~~~~~~~~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 242 RTQHPTKGFA------------------------------------------SVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp EEEETTTEEE------------------------------------------EEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred cCCCccccee------------------------------------------eeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 5432110000 001224456788999999998 899999
Q ss_pred CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE-EEeeCCeEEEEEeeeec
Q psy6984 302 RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVSVTS 377 (380)
Q Consensus 302 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~g~~dg~v~iw~~~~~~ 377 (380)
.||.|++|++..+......+........ ............|...|.+++|+|+|++|+ +|+.||.|++|++...+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGV-AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCC-CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCcEEEeecCCCcccccccCCCCcccc-ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999997654332211111100000 000000111234566789999999999998 79999999999997654
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-39 Score=283.81 Aligned_cols=249 Identities=24% Similarity=0.406 Sum_probs=212.5
Q ss_pred ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~ 137 (380)
..+.+|...|++++|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.+++|++..
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred cc---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984 138 HC---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD 214 (380)
Q Consensus 138 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 214 (380)
.. .......+|...|.++.|++++ .+++++.|+.|++||+++.+....+.+|...|.+++|+|+++++++|+.|
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 32 2333345899999999998864 48999999999999999998888889999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984 215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 294 (380)
+.|++||+++++.+..+ ..|...|.+++|+|++
T Consensus 206 ~~v~~wd~~~~~~~~~~-----------------------------------------------~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 206 ASAKLWDVREGMCRQTF-----------------------------------------------TGHESDINAICFFPNG 238 (340)
T ss_dssp SCEEEEETTTCSEEEEE-----------------------------------------------CCCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCeeEEEE-----------------------------------------------cCCcCCEEEEEEcCCC
Confidence 99999999877543322 1234567889999999
Q ss_pred CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
++|++|+.||+|++||+..+..+..+ . .......+.+++|+|+|++|++|+.||.|++||+.
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~-----------~-------~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTY-----------S-------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEE-----------C-------CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEE-----------c-------cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 99999999999999997654332211 1 01122357899999999999999999999999974
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-39 Score=306.70 Aligned_cols=353 Identities=16% Similarity=0.203 Sum_probs=266.1
Q ss_pred EEeEEecCcccc-eEEEEeCC--CCCCeEEEeeCCCeEEEeecCCCCCC---cccccccccCCCcceEEEEEccCCCEEE
Q psy6984 7 QLRGTLNGHNGW-VTQIATNP--KFPDTILSCSRDNTLIIWKLTRDDTN---YGVPQKRLKGHSHFISDIVLSSDGNYAL 80 (380)
Q Consensus 7 ~~~~~~~~h~~~-v~~i~~~~--~~~~~l~t~~~dg~v~vw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 80 (380)
+....+.+|.+. |++++|+| + +++|++++.||+|++|++...... .......+..|...|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 567789999999 99999999 7 689999999999999998532000 0112345678999999999999999999
Q ss_pred EEeCC----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcC---cE
Q psy6984 81 SGSWD----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD---WV 152 (380)
Q Consensus 81 s~~~d----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v 152 (380)
+++.+ +.|++|| .++....+..|...|.+++|+|+++ .+++++.|+.+++||......... ..+|.. .|
T Consensus 133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~v 209 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-DRTHHKQGSFV 209 (615)
T ss_dssp EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-ECSSSCTTCCE
T ss_pred EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-ecccCCCCceE
Confidence 99988 6888888 5678888899999999999999998 899999999999999876655444 346877 89
Q ss_pred EEEEEccC-CCCCEEEEEeCCCeEEEEeCCCceeeEee-e---CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984 153 SCVRFSPN-HQNPIIVSAGWDRMVKVWNLTNCKLKINH-S---GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227 (380)
Q Consensus 153 ~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 227 (380)
.+++|+|+ +. +|++++.|+.|++||+++.+....+ . .|...|.++.|+ ++++|++++.|+.|++||+.+++.
T Consensus 210 ~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 210 RDVEFSPDSGE--FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEEECSTTCC--EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCC--EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 99999997 54 7999999999999999998877777 5 899999999999 999999999999999999999988
Q ss_pred EEEEEec-----CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc------------------
Q psy6984 228 LHTLVHN-----DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD------------------ 284 (380)
Q Consensus 228 ~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 284 (380)
+..+... ..+..+.+. ++.+ +.....++.+.+|+...++....+..|...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~~~~------l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i 359 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-GNGR------IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI 359 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-ETTE------EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred EEEEcCCCCcccCceeEEEeC-CCCe------EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence 8877654 556777775 3322 122234567777777766555555444444
Q ss_pred ---------------eeEEEEeecCCEEEEeeCCCcEEEEecccce-----------------------eeeEeecccce
Q psy6984 285 ---------------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-----------------------KFTIVDLETKK 326 (380)
Q Consensus 285 ---------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~-----------------------~~~~~~~~~~~ 326 (380)
|.+++| ++++.|++++.|+.|++|+..... .+.+++..+.+
T Consensus 360 ~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 360 MEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 455555 446777777788888888764321 11111111110
Q ss_pred E-------------------------------EEeeCccccc-ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 327 M-------------------------------VEELRPDVVS-QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 327 ~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
. +......... .....+...+.+++|+|+|++|++|+.||.|++|++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 0 0001000000 2334577789999999999999999999999999985
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-38 Score=277.65 Aligned_cols=288 Identities=21% Similarity=0.311 Sum_probs=242.9
Q ss_pred EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 90 (380)
...+|.+.|++++|+|+ +.+|++++ ||.|++|++...............+|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 33489999999999997 68899888 99999999876433222222223378899999999999999999999999999
Q ss_pred EECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 91 WDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 91 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
||+.+++ ....+..|...|.+++|+|+++.+++++.|+.|++||+.+....... ..|...+.+++|+|++. .|++
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~l~~ 200 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGT--KLWT 200 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS--EEEE
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-ecccCceEEEEECCCCC--EEEE
Confidence 9999877 56667889999999999999999999999999999998776554443 46888999999999754 7999
Q ss_pred EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~ 248 (380)
++.|+.|++||+++.+..... .+...+.+++|+|+++++++++.|+.+++||+.+++......+...+..++|+|++.+
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred EecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence 999999999999988776554 3677899999999999999999999999999999887766678899999999998875
Q ss_pred ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
.. ....++.+.+|++..++.. ....+...+.+++|+|++++|++++.||.|++|++
T Consensus 280 l~------~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 280 FV------STGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE------EEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EE------EecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 32 2334678999999888765 33456788999999999999999999999999985
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.2e-38 Score=287.75 Aligned_cols=325 Identities=23% Similarity=0.325 Sum_probs=260.1
Q ss_pred EEeEEecCcccce-EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 7 QLRGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 7 ~~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
.....+.+|.+.| +++.++ +++|++|+.||+|++||+.... ....+.+|...|.+++|++++ +|++|+.|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d 182 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTD 182 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence 3556889998884 677664 4699999999999999976432 344567999999999999988 99999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEeCCCcceE----------------------
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKF---------------------- 141 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~s~~~d~~v~iwd~~~~~~~---------------------- 141 (380)
|.|++||+.+++....+..|...|.+++|+ +++.++++++.|+.+++||+......
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 999999999999999999999999999998 57789999999999999997654321
Q ss_pred EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221 (380)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 221 (380)
.....+|...+.++... + .++++++.|+.|++||+++.+....+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus 263 ~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGH--G--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEEECCCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEccCccceEEEEcCC--C--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 23345778888877533 2 3799999999999999999998888889999999999999999999999999999999
Q ss_pred CCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe
Q psy6984 222 LNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300 (380)
Q Consensus 222 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 300 (380)
+.+++.+..+ .|...+.++++++. + +.....++.+.+|++..+...... .+...+..++|+|++++|++|
T Consensus 339 ~~~~~~~~~~~~h~~~v~~~~~~~~--~------l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 339 LENGELMYTLQGHTALVGLLRLSDK--F------LVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECSS--E------EEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCC--E------EEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEe
Confidence 9999988887 47888999998752 1 223345788999999876644332 345567788999999999999
Q ss_pred eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
+ ||.|++||+..+. .+... ...+...+.+++|+ ++.++++++.||.+.+|-++
T Consensus 410 ~-dg~i~iwd~~~g~-----------~~~~~--------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 410 S-ENQFNIYNLRSGK-----------LVHAN--------ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp E-TTEEEEEETTTCC-----------EEESC--------TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred c-CCeEEEEECCCCc-----------EEehh--------hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 8 8999999875443 22211 12345668899997 44455566778877776654
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=318.90 Aligned_cols=342 Identities=11% Similarity=0.155 Sum_probs=246.0
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-ccccc-----ccccCCCcceEEEEEccC-CCEE
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQ-----KRLKGHSHFISDIVLSSD-GNYA 79 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~-----~~~~~h~~~v~~~~~~~~-~~~l 79 (380)
++...+. |.+.|++++++|+ +++|++|+.||+|++||+...... +.++. ..+.+|...|++++|+|+ +.+|
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 4455664 7789999999998 689999999999999998754321 10000 345789999999999996 5789
Q ss_pred EEEeCCCcEEEEECCCCceeeeeccc------------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984 80 LSGSWDKTLRLWDLAAGKTTRRFEDH------------------TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 80 ~s~~~d~~i~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~ 141 (380)
++|+.|+.| +||+.+++....+..| ...|.+++|+|+|.+|++++.|+.|++||+.++...
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 9999999888877655 467999999999999999999999999998765543
Q ss_pred EEee----C-------------CCcCcEEEEEEccCCC---CCEEEEEe-------------------------------
Q psy6984 142 TIVE----D-------------GHSDWVSCVRFSPNHQ---NPIIVSAG------------------------------- 170 (380)
Q Consensus 142 ~~~~----~-------------~~~~~v~~~~~~~~~~---~~~l~s~~------------------------------- 170 (380)
.... . .|...|.+++|++... ..+|++|+
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 3211 0 1244688888854211 12334443
Q ss_pred ---------------------------------------------CCCeEEEEeCCCceeeEe-----------------
Q psy6984 171 ---------------------------------------------WDRMVKVWNLTNCKLKIN----------------- 188 (380)
Q Consensus 171 ---------------------------------------------~d~~v~iwd~~~~~~~~~----------------- 188 (380)
.|+.|++||+.++.....
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 344555555533211100
Q ss_pred ------------------------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE----EEE--------E
Q psy6984 189 ------------------------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL----HTL--------V 232 (380)
Q Consensus 189 ------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~--------~ 232 (380)
+.+|...+..++|+|++++|++|+.|+.|++||+.++... ... .
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 1122333344556789999999999999999999876421 111 3
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce---------------------------------------
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK--------------------------------------- 273 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 273 (380)
|...|.+++|+|++.+.+ ....++.+.+|++..++
T Consensus 487 h~~~V~svafspdg~~LA------sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 487 KELAVDKISFAAETLELA------VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp SSCCEEEEEEETTTTEEE------EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred CCCceeEEEecCCCCeEE------EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 567899999999987643 33457888999886552
Q ss_pred ------eeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccC-CCCCCc
Q psy6984 274 ------METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST-KADPPM 346 (380)
Q Consensus 274 ------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 346 (380)
....+..|...|++++||||| +||+|+.|++|++||+..+..+... .+ ... ..|...
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~---------~~------~~~~~gh~~~ 624 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME---------NI------REISGAQSAC 624 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEE---------EG------GGTCSSCCCC
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEe---------eh------hHhccccccc
Confidence 123445688899999999999 9999999999999986443321110 00 011 256778
Q ss_pred eEEEEEe-----cCC---CEEEEEeeCCeEEEEEe
Q psy6984 347 CLSLAWS-----TDG---QTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 347 ~~~~~~s-----~dg---~~l~~g~~dg~v~iw~~ 373 (380)
|.+++|| ||| ++|++|+.|++|++|++
T Consensus 625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999999 886 89999999999999999
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6e-39 Score=285.19 Aligned_cols=310 Identities=14% Similarity=0.161 Sum_probs=239.6
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 91 (380)
+..|.+.|++++|+|+ +++|++++.||.|++|++..... .....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 3459999999999998 68999999999999999864320 1234567899999999999999999999999999999
Q ss_pred ECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 92 DLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 92 d~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
|+.+++.... +..|...|.+++|+|+++++++++.|+.+++||+..... ......+|...|.+++|+|++. +|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV--LL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS--EE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC--EE
Confidence 9988865444 367889999999999999999999999999999876542 3344467888999999999754 79
Q ss_pred EEEeCCCeEEEEeCC------------------CceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 167 VSAGWDRMVKVWNLT------------------NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
++++.|+.|++||++ ..+....+.+|...+.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 999999999999953 45666667789999999999999999999999999999999877654
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL 308 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 308 (380)
..+. .+...+.+++|+|++++|++| .|+.|++
T Consensus 238 ~~~~-----------------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 238 ATLA-----------------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVL 269 (372)
T ss_dssp EEEE-----------------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred EEEc-----------------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence 3321 122357789999999988887 8999999
Q ss_pred Eeccc--ceeeeEeeccc--c---------eEEE--eeCcccc------cccCCCCCCceEEEEEe-cCC---CEEEEEe
Q psy6984 309 WNTLA--HCKFTIVDLET--K---------KMVE--ELRPDVV------SQSTKADPPMCLSLAWS-TDG---QTLFAGY 363 (380)
Q Consensus 309 w~~~~--~~~~~~~~~~~--~---------~~~~--~~~~~~~------~~~~~~~~~~~~~~~~s-~dg---~~l~~g~ 363 (380)
|+... +.-..+..... . .... ....... ......|...|.+++|+ ++| ++|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~ 349 (372)
T 1k8k_C 270 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 349 (372)
T ss_dssp EEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE
T ss_pred EEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec
Confidence 99765 31000000000 0 0000 0000000 11123677889999866 666 9999999
Q ss_pred eCCeEEEEEeee
Q psy6984 364 SDNTIRVWQVSV 375 (380)
Q Consensus 364 ~dg~v~iw~~~~ 375 (380)
.||.|++|++..
T Consensus 350 ~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 350 MDGGMSIWDVRS 361 (372)
T ss_dssp TTSEEEEEEHHH
T ss_pred CCCceEEEEecC
Confidence 999999999864
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-38 Score=288.17 Aligned_cols=324 Identities=25% Similarity=0.412 Sum_probs=264.6
Q ss_pred EeEEecCcccce-EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 8 LRGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 8 ~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
....+.+|.+.| +++.++ +++|++|+.||+|++||+.... ....+.+|...|.++.++ +++|++|+.||
T Consensus 110 ~~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CCEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred eeEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence 456788999874 666664 5799999999999999986543 234567999999999997 67999999999
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
.|++||+.+++....+..|...|.+++|+ +..+++++.|+.|++||+.+....... .+|...+.++.+. + ..+
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~--~--~~l 252 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYD--G--RRV 252 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEEC--S--SCE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEEC--C--CEE
Confidence 99999999999999999999999999996 578999999999999998876655444 4788899999993 2 368
Q ss_pred EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecC
Q psy6984 167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN 245 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~ 245 (380)
++++.|+.|++||+++.+....+.+|...+.++.+ +++++++++.|+.|++||+++++.+..+. +...+..+.+++.
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 330 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 330 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT
T ss_pred EEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCC
Confidence 99999999999999998888888899999999998 78999999999999999999999887774 5667777776543
Q ss_pred cccceeeeeeeeeccccceEEEEcCCceeeeeeec---cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS---LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
+ +.....++.+.+|++..++....+.. +...|.+++|+ +++|++|+.||.|++|++..+..+..+..
T Consensus 331 --~------l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 331 --I------LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp --E------EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred --E------EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 1 22334578899999988887766665 66789999885 68999999999999999765543322110
Q ss_pred ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCe----EEEEEeee
Q psy6984 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT----IRVWQVSV 375 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~----v~iw~~~~ 375 (380)
. ....+...+.+++|+|+|.+|++|+.||. |.|||+..
T Consensus 401 --------~-------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 --------L-------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp --------C-------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred --------c-------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 0 11234556889999999999999999997 99999864
No 48
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-39 Score=279.88 Aligned_cols=258 Identities=19% Similarity=0.297 Sum_probs=207.7
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCC
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDK 86 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~ 86 (380)
+..+.+|.+.|++++|+|+ +++|++|+.|++|++|++..... .....+.+|...|.+++|++ ++++|++|+.|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCc---EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 3467899999999999998 78999999999999999864221 12356789999999999986 489999999999
Q ss_pred cEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEccCC
Q psy6984 87 TLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 87 ~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
.|++||+.+++ .+..+..|...|.+++|+|+ +..+++++.|+.|++||+.... .......+|...|.+++|+|+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 99999998874 45667789999999999997 8899999999999999986542 1123345788999999999963
Q ss_pred C-----------CCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCCC---CEEEEEcCCCcEEEEECC
Q psy6984 162 Q-----------NPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPDG---SLCASGGKDMNAMLWDLN 223 (380)
Q Consensus 162 ~-----------~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~ 223 (380)
. ..+|++++.|+.|++||+++.+ ....+.+|...|.+++|+|++ .+|++++.|+.|++||+.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 1 3489999999999999997654 445677899999999999985 899999999999999986
Q ss_pred CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 224 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
.+...... . ......+...|++++|+|++++|++++.|
T Consensus 238 ~~~~~~~~--------~----------------------------------~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 238 NEQGPWKK--------T----------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp STTSCCEE--------E----------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCCccce--------e----------------------------------eeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 53210000 0 00001233568899999999999999999
Q ss_pred CcEEEEecc
Q psy6984 304 KTIKLWNTL 312 (380)
Q Consensus 304 g~v~iw~~~ 312 (380)
|+|++|+..
T Consensus 276 ~~v~lw~~~ 284 (297)
T 2pm7_B 276 NKVTLWKEN 284 (297)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999853
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=276.33 Aligned_cols=287 Identities=23% Similarity=0.319 Sum_probs=229.9
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
..++..++.+|.+.|+++++ |+ +.+|++++.||.|++|++.... ....+..|...|.+++|+|++++|++++.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 45788999999999999999 66 6799999999999999985432 23446678899999999999999999999
Q ss_pred CCcEEEEECCCC---ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 85 DKTLRLWDLAAG---KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 85 d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
|+.|++|++... +....+..|...|.+++| ++..+++++.|+.+++|| .... ......|...+.++.+.|..
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~-~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL-VYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE-EEEEECCSSCEEEEEEEETT
T ss_pred CCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE-EEecccCCCceeEEEEccCC
Confidence 999999998754 556777889999999999 578999999999999999 2222 23334688899999998832
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~ 240 (380)
...+++++.|+.|++||.. +....+.. |...+.+++++|++. +++++.|+.|++||+++++.+..+.
T Consensus 155 -~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-------- 222 (313)
T 3odt_A 155 -ENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-------- 222 (313)
T ss_dssp -TTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--------
T ss_pred -CCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--------
Confidence 2379999999999999954 33444445 888999999999998 8999999999999998776543321
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV 320 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 320 (380)
.+...+.+++|+|++ .|++++.||.|++||+..+.....+
T Consensus 223 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 223 ---------------------------------------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp ---------------------------------------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred ---------------------------------------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 233457788999998 5889999999999987554332221
Q ss_pred ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
..+...+.+++|+|+|+ +++++.||.|++|++...
T Consensus 263 --------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 263 --------------------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp --------------------ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred --------------------eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 11234578999999999 556899999999998754
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-41 Score=297.84 Aligned_cols=309 Identities=11% Similarity=0.106 Sum_probs=222.5
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 93 (380)
.|.+.|++++|+|+ +++|++|+.||.|++|++..... .....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 9 ~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp ECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred cCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 46789999999997 68999999999999999874310 134457889999999999999999999999999999999
Q ss_pred CCCc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984 94 AAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPIIV 167 (380)
Q Consensus 94 ~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~ 167 (380)
.+++ ....+..|...|.+++|+|+++.+++++.|+.|++||+..... ...+...|...|.+++|+|++. +|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV--LLA 162 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS--EEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC--EEE
Confidence 9877 5667788999999999999999999999999999999876542 3344434899999999999754 799
Q ss_pred EEeCCCeEEEEeCCC------------------ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984 168 SAGWDRMVKVWNLTN------------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH 229 (380)
Q Consensus 168 s~~~d~~v~iwd~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 229 (380)
+++.|+.|++||+.. .+....+ +|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 999999999999852 3344444 889999999999999999999999999999987764210
Q ss_pred EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984 230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309 (380)
Q Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 309 (380)
. ....+..|...|.+++|+|++++|++|+.|+.+ +|
T Consensus 242 ~-------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 242 R-------------------------------------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL 277 (377)
T ss_dssp E-------------------------------------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred e-------------------------------------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence 0 011223445678899999999999998876666 66
Q ss_pred ecccce-ee-eEeecccc--------------------------eEEEeeC----cccccccCCCCCCceEEEEEecCC-
Q psy6984 310 NTLAHC-KF-TIVDLETK--------------------------KMVEELR----PDVVSQSTKADPPMCLSLAWSTDG- 356 (380)
Q Consensus 310 ~~~~~~-~~-~~~~~~~~--------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~dg- 356 (380)
+..... +. ..++.... .+..... ..........|...|.++++.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 554221 10 00010000 0000000 000111223478889999866654
Q ss_pred C---EEEEEeeCCeEEEEEe
Q psy6984 357 Q---TLFAGYSDNTIRVWQV 373 (380)
Q Consensus 357 ~---~l~~g~~dg~v~iw~~ 373 (380)
. .|++|+.||.|+||++
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3 5999999999999985
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.5e-40 Score=289.26 Aligned_cols=251 Identities=20% Similarity=0.238 Sum_probs=205.9
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR 89 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 89 (380)
....+|...|++++|+|+ ..+++++.||+|++||+....... .......+|...|++++|+|++++|++|+.|+.|+
T Consensus 88 ~~~~~~~~~V~~~~~s~d--~~~l~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSE--KGILVASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp SEEEECSSCEEEEEEETT--TEEEEEETTSCEEEC--------C-CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cccCCCCCCEEEEEEcCC--CCEEEEECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 345678999999999997 367788999999999987543221 11223458999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEE
Q psy6984 90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIV 167 (380)
Q Consensus 90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~ 167 (380)
+||+.+++.+..+..|...|.+++|+|++. .+++++.|+.|++||+.+....... ...+...+.+++|+|++. .+|+
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~~la 243 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD-DTFA 243 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST-TEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc-ceEE
Confidence 999999999999999999999999999875 7899999999999998765443322 235667799999999754 4788
Q ss_pred EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984 168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246 (380)
Q Consensus 168 s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~ 246 (380)
+|+.|+.|++||+++.+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++.+..+
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--------------- 308 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--------------- 308 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------
Confidence 99999999999999998888888999999999999987 57999999999999999877644332
Q ss_pred ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee-cCCEEEEeeCCCcEEEEecc
Q psy6984 247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~ 312 (380)
+|...|.+++|+| ++++|+||+.||+|++|++.
T Consensus 309 ---------------------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 309 ---------------------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ---------------------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ---------------------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 2334577888888 78999999999999999864
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-41 Score=307.33 Aligned_cols=329 Identities=11% Similarity=0.060 Sum_probs=215.0
Q ss_pred cccceEEEEeCCCC-C-------CeEEE-------------------eeCCCeEEEeecCCCCCCcccccccccCCCcce
Q psy6984 15 HNGWVTQIATNPKF-P-------DTILS-------------------CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67 (380)
Q Consensus 15 h~~~v~~i~~~~~~-~-------~~l~t-------------------~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v 67 (380)
+.+.|.+|+|+|.. + .+||+ ++.|++|++|++........ ....+.+|...|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcE
Confidence 56789999998863 1 34544 56889999999865432110 112345677889
Q ss_pred EEEEEccC------CCEEEEEeCCCcEEEEECCCCce-----------eeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984 68 SDIVLSSD------GNYALSGSWDKTLRLWDLAAGKT-----------TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130 (380)
Q Consensus 68 ~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v 130 (380)
.+++|+|+ +.+||+++.||.|++||+.+++. ...+..|...|.+++|+++ ..|++|+.||+|
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV 289 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV 289 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence 99999996 57999999999999999987642 2356789999999999986 489999999999
Q ss_pred EEEeCCCcceEEEeeCCCcCcEEEEE--EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc--ceEEEEEcCCCC
Q psy6984 131 KLWNTLAHCKFTIVEDGHSDWVSCVR--FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG--YLNTVTVSPDGS 206 (380)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 206 (380)
++||+...........+|...|.+++ ++|++. .+|+|++.|++|++||+++.+....+.+|.. .+.+++|+|+++
T Consensus 290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~-~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFED-TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSC-CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred EEEECCCCCCceEEeecccccEEEEEEEcCCCCC-eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 99998754332233457999999994 555431 4899999999999999988765555555543 478999999999
Q ss_pred EEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc---
Q psy6984 207 LCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF--- 282 (380)
Q Consensus 207 ~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 282 (380)
.+++++.|+.|++||++++..+..+ .|...|.+++|+|++++.+ ....++.+.+|+...+ ....+....
T Consensus 369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~------Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~ 441 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL------AGSADGSLIITNAARR-LLHGIKNSSATQ 441 (524)
T ss_dssp EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE------EEETTTEEECCBSCSS-TTTCC------C
T ss_pred eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE------EEECCCEEEEEechHh-hccccccCccce
Confidence 9999999999999999887654333 3555566666666554321 1223445555554322 111110000
Q ss_pred --cceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC---
Q psy6984 283 --RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ--- 357 (380)
Q Consensus 283 --~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--- 357 (380)
..+++++|+|+++.+. ...+ +++|... .+. ........|...|.+|+|+|+++
T Consensus 442 ~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~----------~~g---------~~~~~l~gh~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYR-IDSS--YEVYPLT----------VND---------VSKAKIDAHGINITCTKWNETSAGGK 499 (524)
T ss_dssp CCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------------------------CCCSCCCEEECCSTTTTT
T ss_pred eeeEEEEeccCCCCCeEE-ccCC--ceecccc----------cCC---------cceeeecCCCceEEEEECCCCCCccH
Confidence 0244555555555321 1111 1111100 000 00112234567789999999965
Q ss_pred EEEEEeeCCeEEEEEeee
Q psy6984 358 TLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 358 ~l~~g~~dg~v~iw~~~~ 375 (380)
+||+|+.||.|+||++..
T Consensus 500 ~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEEECTTSEEEEEECSC
T ss_pred HHHhhccCceEEEEEccc
Confidence 999999999999999864
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-38 Score=311.17 Aligned_cols=359 Identities=18% Similarity=0.233 Sum_probs=265.9
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
.+.+....+.+|.+.|+++.|+|+ +.+|++++.||.|++|++.... ....+.+|...|.+++|+|++++|++++
T Consensus 43 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 43 ETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 345677888999999999999998 6899999999999999986542 2345678999999999999999999999
Q ss_pred CCCcEEEEECCCC-ceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 84 WDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 84 ~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.|+.|++||+............+...+.+++|+|.+
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCST
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECC
Confidence 9999999999887 66777888999999999999 889999999999999999876655555555666789999999955
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL 240 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~ 240 (380)
...++++++.|+.|++||+.+.+....+.+|...|.+++|+|+++++++++.|+.|++||+.+++.+..+. +...+.++
T Consensus 197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp TCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 55689999999999999999988888888999999999999999999999999999999999998887774 56789999
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCce----------e---------------------------------eee
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGK----------M---------------------------------ETP 277 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------------------------------~~~ 277 (380)
+|+|++....+... .+..+.+|...... . ...
T Consensus 277 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (814)
T 3mkq_A 277 ATHPTGRKNYIASG-----FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE 351 (814)
T ss_dssp EECTTCGGGEEEEE-----ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEE
T ss_pred EEccCCCceEEEEE-----eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeec
Confidence 99998763211111 11222222221110 0 001
Q ss_pred eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee-------EeecccceEEEeeCcccc--cccCCCCCCceE
Q psy6984 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------IVDLETKKMVEELRPDVV--SQSTKADPPMCL 348 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 348 (380)
+..+...+.+++|+|+|+++++++ |+.+++|++....... .+......+......... -.....+...+.
T Consensus 352 ~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~ 430 (814)
T 3mkq_A 352 LGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSV 430 (814)
T ss_dssp ECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCC
T ss_pred CCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEE
Confidence 122334578999999999999988 8999999965332111 000011111000000000 001122333455
Q ss_pred EEEEecCC---CEEEEEeeCCeEEEEEee
Q psy6984 349 SLAWSTDG---QTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 349 ~~~~s~dg---~~l~~g~~dg~v~iw~~~ 374 (380)
.++|+||| +.|++++.|+.|++||+.
T Consensus 431 ~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 431 PMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp CCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred cCCcCccceecceEEEEecCCEEEEEECC
Confidence 66677776 466667777777777764
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7e-39 Score=276.04 Aligned_cols=257 Identities=22% Similarity=0.300 Sum_probs=203.3
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeC
Q psy6984 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNT 135 (380)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~ 135 (380)
+.+|...|++++|+|+|++|++|+.|+.|+|||+.++ +.+..+.+|.++|.+++|+| ++++|++++.|++|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 5789999999999999999999999999999999743 66788899999999999986 4899999999999999998
Q ss_pred CCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcCC--------
Q psy6984 136 LAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSPD-------- 204 (380)
Q Consensus 136 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~-------- 204 (380)
.... .......+|...|.+++|+|+....+|++++.|+.|++||++... ......+|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 7542 122233578889999999997434589999999999999998653 23456789999999999997
Q ss_pred -----CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee
Q psy6984 205 -----GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF 279 (380)
Q Consensus 205 -----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (380)
+++|++|+.|+.|++||+++++.... ....+.
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~-------------------------------------------~~~~l~ 201 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV-------------------------------------------LESTLE 201 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTEEE-------------------------------------------EEEEEC
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCceEE-------------------------------------------EEEEec
Confidence 57999999999999999865431100 011233
Q ss_pred ccccceeEEEEeecC---CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC
Q psy6984 280 SLFRDVLSVAFSVDN---RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG 356 (380)
Q Consensus 280 ~~~~~v~~~~~s~~~---~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 356 (380)
+|...|.+++|+|++ ++|++|+.|++|++|+....... .....+ ....+...+.+++|+|+|
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------~~~~~~-------~~~~~~~~v~~~~~s~~g 266 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------WKKTLL-------KEEKFPDVLWRASWSLSG 266 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEES-------SSSCCSSCEEEEEECSSS
T ss_pred CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--------cceeee-------ecccCCCcEEEEEECCCC
Confidence 456678899999984 89999999999999986432100 000000 012345678899999999
Q ss_pred CEEEEEeeCCeEEEEEee
Q psy6984 357 QTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 357 ~~l~~g~~dg~v~iw~~~ 374 (380)
++||+++.||.|++|++.
T Consensus 267 ~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 267 NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEEcCCCcEEEEEEC
Confidence 999999999999999975
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=275.52 Aligned_cols=287 Identities=16% Similarity=0.235 Sum_probs=239.0
Q ss_pred ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~ 137 (380)
..+.+|...|++++|+|++++|++++.||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCce-----------eeEeeeCCcc--ceEEE
Q psy6984 138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCK-----------LKINHSGHTG--YLNTV 199 (380)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~-----------~~~~~~~~~~--~i~~~ 199 (380)
........ +...+.+++|+|++. ++++++.+ +.|++||+.... .......|.. .+.++
T Consensus 106 ~~~~~~~~--~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 106 GQCVATWK--SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CcEEEEee--cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 76655554 677899999999764 78888888 999999987542 2223344555 89999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984 200 TVSPDGSLCASGGKDMNAMLWDLND-GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277 (380)
Q Consensus 200 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (380)
+|+|+++++++++.|+.|++||+.+ .+.+..+. +...+.+++|+|++.+.. ....++.+.+|++..++....
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI------TSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE------EEETTSEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE------EecCCceEEEEECCCCceeee
Confidence 9999999999999999999999998 66666664 688899999999876532 223567899999998877655
Q ss_pred eeccccceeEEEEeecCCEEEEeeCCC--------------cEEEEecccceeeeEeecccceEEEeeCcccccccCCCC
Q psy6984 278 FFSLFRDVLSVAFSVDNRQIVSSSRDK--------------TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD 343 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (380)
+. +...+..++|+|+++++++++.++ .+++|+...+ ..+..+ ..+
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------~~~~~~---------~~~ 314 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-----------EEIGRV---------QGH 314 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-----------CEEEEE---------ECC
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-----------cchhhe---------ecc
Confidence 54 667899999999999999999998 5666654333 222222 234
Q ss_pred CCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 344 ~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
...+.+++|+|+|++|++|+.||.|++|++..
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 55688999999999999999999999999864
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=285.40 Aligned_cols=292 Identities=20% Similarity=0.308 Sum_probs=232.2
Q ss_pred EeEEecCcccc--eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 8 LRGTLNGHNGW--VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 8 ~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
......+|... ++++.|++ ..+++++.||.|++|++...... ......|...|.+++|+|++++|++|+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 155 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVS----ALAETDESTYVASVKWSHDGSFLSVGLGN 155 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEE----EEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred eeeeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEe----EeeecCCCCCEEEEEECCCCCEEEEECCC
Confidence 44455677665 45566664 45888899999999998754321 11123478899999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
|.|++||+.+++....+..|...|.+++|+ +..+++++.|+.|++||+...........+|...|.+++|+|++. +
T Consensus 156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ 231 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL--Q 231 (401)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--E
T ss_pred CeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC--E
Confidence 999999999999999999999999999994 679999999999999998754444444557899999999999654 7
Q ss_pred EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEc--CCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
|++++.|+.|++||+++.+....+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+.+.
T Consensus 232 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-------- 303 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-------- 303 (401)
T ss_dssp EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--------
T ss_pred EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--------
Confidence 99999999999999999888888888999999999999765 566654 7999999999887765443221
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE--eeCCCcEEEEecccceeeeEe
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS--SSRDKTIKLWNTLAHCKFTIV 320 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~ 320 (380)
..+.+++|+|++++|++ |+.||.|++|++..+......
T Consensus 304 ----------------------------------------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 304 ----------------------------------------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343 (401)
T ss_dssp ----------------------------------------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred ----------------------------------------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence 24667888999999998 448999999986543222111
Q ss_pred ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
. ...|...+.+++|+|+|++|++++.||.|++|++...
T Consensus 344 ~------------------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 344 D------------------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp E------------------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred E------------------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 0 1234556889999999999999999999999998643
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=285.24 Aligned_cols=301 Identities=21% Similarity=0.283 Sum_probs=234.0
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc--------cccccCCCcceEEEEEcc-CC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP--------QKRLKGHSHFISDIVLSS-DG 76 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~-~~ 76 (380)
.+....+.+|.+.|++++|+|..+++|++|+.||.|++|++.......... .....+|...|.+++|+| ++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345567889999999999999337899999999999999987644322111 111246999999999999 78
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS 153 (380)
Q Consensus 77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 153 (380)
++|++++.|+.|++||+.+++....+. +...+.++.++|. +..+++++.|+.|++||+......... ..|...|.
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~ 190 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEIL 190 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEE
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEE
Confidence 899999999999999999988887765 6788999999884 459999999999999998766554443 47888999
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEee---------------eCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984 154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINH---------------SGHTGYLNTVTVSPDGSLCASGGKDMNA 217 (380)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i 217 (380)
+++|+|++.. +|++++.|+.|++||++.... .... ..|...|.+++|+|++++|++++.|+.|
T Consensus 191 ~~~~~~~~~~-ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 191 AVSWSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEECSSCTT-EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEECCCCCc-EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 9999998643 688999999999999976541 1111 4688899999999999999999999999
Q ss_pred EEEECCCCcEEEEEEec---CceE--EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 218 MLWDLNDGKHLHTLVHN---DIIT--ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 218 ~i~d~~~~~~~~~~~~~---~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
++||+.+++........ .... ...+...... .......++.+.+|++..++....+..|...|.+++|+|
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS-----EFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS-----CEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCc-----eEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 99999987654332110 0000 1111111100 111223467899999999998888888999999999999
Q ss_pred cCCEEEEeeCCCcEEEEecccc
Q psy6984 293 DNRQIVSSSRDKTIKLWNTLAH 314 (380)
Q Consensus 293 ~~~~l~s~~~dg~v~iw~~~~~ 314 (380)
++++|++|+.||.|++|++...
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC-
T ss_pred CCCEEEEECCCCeEEEEeCCCC
Confidence 9999999999999999987544
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=275.71 Aligned_cols=259 Identities=20% Similarity=0.296 Sum_probs=196.5
Q ss_pred EEeEEe-cC-cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984 7 QLRGTL-NG-HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 7 ~~~~~~-~~-h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 82 (380)
++...+ .+ |.+.|++++|+|+ +.+|++|+.|++|++|++...... .......+.+|...|.+++|+|++++|++|
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred EEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 455556 45 9999999999998 689999999999999998532110 111234578999999999999999999999
Q ss_pred eCCCcEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEE
Q psy6984 83 SWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRF 157 (380)
Q Consensus 83 ~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~ 157 (380)
+.|+.|++||+... +.+..+..|...|.+++|+|++.+|++++.|++|++||..... .......+|...|.+++|
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence 99999999999432 4566788999999999999999999999999999999976542 233345689999999999
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCc--------eeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 158 SPNHQNPIIVSAGWDRMVKVWNLTNC--------KLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 158 ~~~~~~~~l~s~~~d~~v~iwd~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
+|+.....|++++.|++|++||+... .....+.+ |...|.+++|++++ +|++++.|+.|++||..+++..
T Consensus 206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence 99865568999999999999998653 22233334 88899999999765 8899999999999997554210
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc-ceeEEEEee--cCCEEEEeeCCCc
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR-DVLSVAFSV--DNRQIVSSSRDKT 305 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~ 305 (380)
... .....|.. .|.+++|+| ++++|++|+.||+
T Consensus 285 ~~~--------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 285 VFA--------------------------------------------KRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEE--------------------------------------------EESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred EEe--------------------------------------------ccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 000 00112333 578899999 6899999999999
Q ss_pred EEEEec
Q psy6984 306 IKLWNT 311 (380)
Q Consensus 306 v~iw~~ 311 (380)
|++|++
T Consensus 321 v~~W~~ 326 (330)
T 2hes_X 321 VNFWSL 326 (330)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999985
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.6e-38 Score=275.86 Aligned_cols=254 Identities=23% Similarity=0.329 Sum_probs=214.4
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
.+....+..|...|.+++++|+ +.++++++.|+++++|++...... .......+.+|...|.++.|+|++++|++++.
T Consensus 96 ~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 96 TNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp CCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred CCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 3456678889999999999998 789999999999999998643211 11223456789999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
|+.|++||+.+++.+..+.+|...|.+++|+| ++..+++|+.|+.|++||+.+...... ..+|...|.+++|+|++.
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-FETHESDVNSVRYYPSGD 253 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS
T ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCeEEEEEeCCCC
Confidence 99999999999999999999999999999987 578999999999999999887665444 357899999999999764
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~ 240 (380)
+|++++.|++|++||++..+....+.. +...+.+++|+|+++++++|+.|+.|++||+.+++.+..
T Consensus 254 --~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~---------- 321 (354)
T 2pbi_B 254 --AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI---------- 321 (354)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE----------
T ss_pred --EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE----------
Confidence 799999999999999998765544433 334689999999999999999999999999987754322
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
+.+|...|.+++|+|++++|++|+.||+|++|+
T Consensus 322 -------------------------------------l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 -------------------------------------LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -------------------------------------EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 223456788999999999999999999999995
No 60
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=277.66 Aligned_cols=263 Identities=21% Similarity=0.284 Sum_probs=206.1
Q ss_pred ccccCCCc-ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee---eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984 58 KRLKGHSH-FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133 (380)
Q Consensus 58 ~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw 133 (380)
..+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++... ...+|...|.+++|+|++++|++++.|+.+++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45678988 89999999999999999999999999998875432 236799999999999999999999999999999
Q ss_pred eCCCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce---eeEeeeCCccceEEEEEcCCCCEEE
Q psy6984 134 NTLAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK---LKINHSGHTGYLNTVTVSPDGSLCA 209 (380)
Q Consensus 134 d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~ 209 (380)
|..... .......+|...|.+++|+|+++ +|++++.|+.|++||+.... ....+.+|...|.+++|+|++++|+
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 976543 22334568999999999999764 79999999999999997653 3445678999999999999999999
Q ss_pred EEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE
Q psy6984 210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA 289 (380)
Q Consensus 210 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 289 (380)
+++.|+.|++||...++.... ..+.+|...|.+++
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~---------------------------------------------~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCC---------------------------------------------ATLEGHESTVWSLA 201 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEE---------------------------------------------EEECCCSSCEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEE---------------------------------------------EEecCCCCceEEEE
Confidence 999999999999765432110 11224556789999
Q ss_pred EeecCCEEEEeeCCCcEEEEecccceeeeEeec----ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC
Q psy6984 290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL----ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD 365 (380)
Q Consensus 290 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d 365 (380)
|+|++++|++|+.|++|++|+.........+.. .....+. .....|...+.+++|+|++..|++++.|
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~l~s~~~d 273 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC--------TLSGFHSRTIYDIAWCQLTGALATACGD 273 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE--------EECSSCSSCEEEEEECTTTCCEEEEETT
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE--------EecCCCCCcEEEEEEecCCCEEEEEeCC
Confidence 999999999999999999998532211000000 0000111 1122356678999999999999999999
Q ss_pred CeEEEEEeee
Q psy6984 366 NTIRVWQVSV 375 (380)
Q Consensus 366 g~v~iw~~~~ 375 (380)
+.|++|++..
T Consensus 274 ~~i~vw~~~~ 283 (345)
T 3fm0_A 274 DAIRVFQEDP 283 (345)
T ss_dssp SCEEEEEECT
T ss_pred CeEEEEEeCC
Confidence 9999999753
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=288.64 Aligned_cols=320 Identities=15% Similarity=0.274 Sum_probs=227.0
Q ss_pred cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc------ccccccccCCC------------cceEEEEEccCC
Q psy6984 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY------GVPQKRLKGHS------------HFISDIVLSSDG 76 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~------~~~~~~~~~h~------------~~v~~~~~~~~~ 76 (380)
|.+.|++++|+|+ +++|++|+.||.|++|++....... ......+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5789999999997 7899999999999999987543100 00134567898 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCcee---------------------------------------ee-ecccCCCeEEEEE
Q psy6984 77 --NYALSGSWDKTLRLWDLAAGKTT---------------------------------------RR-FEDHTKDVLSVAF 114 (380)
Q Consensus 77 --~~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~ 114 (380)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999998764331 12 3579999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCcc-eEEEe------eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--
Q psy6984 115 SVDNRQIVSSSRDKTIKLWNTLAHC-KFTIV------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-- 185 (380)
Q Consensus 115 ~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-- 185 (380)
+|+++.++++ .|+.|++||+.... ..... ..+|...|.+++|+|++. .+|++++.|+.|++||+++.+.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcCCcccc
Confidence 9999999998 89999999987432 22221 347888999999999752 3899999999999999998775
Q ss_pred --eEeeeCCcc------------ceEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEeecCcccce
Q psy6984 186 --KINHSGHTG------------YLNTVTVSPDGSLCASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCFSPNRSFQK 250 (380)
Q Consensus 186 --~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 250 (380)
...+.+|.. .|.+++|+|+|++|++++. +.|++||++. ++.+..+.....+.. ..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~-------~l-- 333 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS-------KL-- 333 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT-------TH--
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc-------cc--
Confidence 456666665 8999999999999999999 9999999986 543332221100000 00
Q ss_pred eeeeeeeeccccceEEEEcCCceeeeeee--ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984 251 IKLDISRTLQKSNLILYPINHGKMETPFF--SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV 328 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 328 (380)
...+ .....+..++|+|++++|++|+.||.|++||+..+..+.+.........
T Consensus 334 -------------------------~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 334 -------------------------CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp -------------------------HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred -------------------------cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 0000 0001234589999999999999999999999877665433211110000
Q ss_pred -EeeCcc-----------cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 329 -EELRPD-----------VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 329 -~~~~~~-----------~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
....+. ............+..++|+|+|++||+|+.++ +.+|.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 000000 00001122345678899999999999988776 777763
No 62
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-37 Score=269.27 Aligned_cols=255 Identities=22% Similarity=0.341 Sum_probs=208.9
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
.....+.+|...|+++.++|+ +.+|++|+.|++|++||+.... ....+.+|...|.+++|+|++++|++|+.|+
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 129 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred ccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCC-----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 346688999999999999998 7899999999999999986532 2345789999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCC------CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD------NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN 160 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (380)
.|++||+. ++....+.+|...|.+++|+|. +..+++++.|+.|++||+....... ...+|...|.+++|+|+
T Consensus 130 ~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPD 207 (319)
T ss_dssp CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEECTT
T ss_pred eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEcCC
Confidence 99999986 5677788899999999999985 4589999999999999987654433 34589999999999997
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240 (380)
Q Consensus 161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~ 240 (380)
+. +|++++.|+.|++||+.+.+....+.. ...+.+++|+|++.++++++.+ .+++|++.....+..+...
T Consensus 208 g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~------ 277 (319)
T 3frx_A 208 GT--LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE------ 277 (319)
T ss_dssp SS--EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC------
T ss_pred CC--EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc------
Confidence 64 799999999999999999887776664 4579999999999999888765 5999998765433222100
Q ss_pred EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
. ......+...+.+++|+|||++|++|+.||+|++|++.
T Consensus 278 -----~----------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 278 -----F----------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp -----C----------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred -----c----------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 0 00011233457899999999999999999999999853
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-39 Score=281.57 Aligned_cols=257 Identities=19% Similarity=0.342 Sum_probs=200.9
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCC
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWD 85 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d 85 (380)
+...+.+|.+.|++++|+|+ +++|++|+.|++|++||+..... .....+.+|...|.+++|++ ++++|++|+.|
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred eeeecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 34466799999999999997 78999999999999999864321 12345789999999999975 48999999999
Q ss_pred CcEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEcc
Q psy6984 86 KTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 86 ~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~ 159 (380)
+.|++||+.+++ ....+.+|...|.+++|+|+ +.++++++.|+.|++||....... .....+|...+.+++|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 999999998873 55667889999999999998 789999999999999998654322 233457888899999998
Q ss_pred CCC---------------CCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccceEEEEEcCCC----CEEEEEcCCCcE
Q psy6984 160 NHQ---------------NPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYLNTVTVSPDG----SLCASGGKDMNA 217 (380)
Q Consensus 160 ~~~---------------~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i 217 (380)
+.. ..+|++++.|+.|++||++.. +....+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 631 247899999999999999754 3455677899999999999986 789999999999
Q ss_pred EEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984 218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 297 (380)
++||+.+.... ... ...+..+...|++++|+|++++|
T Consensus 241 ~iw~~~~~~~~------------------~~~-------------------------~~~~~~~~~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 241 FIWTCDDASSN------------------TWS-------------------------PKLLHKFNDVVWHVSWSITANIL 277 (316)
T ss_dssp EEEECSSTTCC------------------CCB-------------------------CCEEEECSSCEEEEEECTTTCCE
T ss_pred EEEEccCcccc------------------chh-------------------------hhhhhcCCCcEEEEEEcCCCCEE
Confidence 99998653100 000 00011234568899999999999
Q ss_pred EEeeCCCcEEEEec
Q psy6984 298 VSSSRDKTIKLWNT 311 (380)
Q Consensus 298 ~s~~~dg~v~iw~~ 311 (380)
++++.||+|++|+.
T Consensus 278 as~~~D~~v~lw~~ 291 (316)
T 3bg1_A 278 AVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEESSSCEEEEEE
T ss_pred EEEcCCCeEEEEEE
Confidence 99999999999985
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-38 Score=283.64 Aligned_cols=265 Identities=23% Similarity=0.332 Sum_probs=216.3
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccC-CCEEE
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSD-GNYAL 80 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~l~ 80 (380)
.+.+....+.+|...|.+++|+|+ +++|++|+.|+.+++|++...... .......+.+|...|.++.|.|+ +.+|+
T Consensus 96 ~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 96 LTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp TTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred CCCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 344567889999999999999998 789999999999999998643211 11123457899999999999986 45799
Q ss_pred EEeCCCcEEEEECCCCceeeee-----cccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984 81 SGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 81 s~~~d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 154 (380)
+|+.|+.|++||+.+++.+..+ .+|...|.+++|++ ++..+++|+.|+.|++||+...........+|...|.+
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred EECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 9999999999999999888776 57889999999976 88999999999999999986433333344689999999
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC-------ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984 155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH-------TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 227 (380)
++|+|++. +|++++.|++|++||+++++....+..+ ...+.+++|+|+|+++++|+.|+.|++||+..++.
T Consensus 255 v~~~p~~~--~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 255 VKFFPDGQ--RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp EEECTTSS--EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred EEEecCCC--eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 99999764 7999999999999999988766554433 23489999999999999999999999999987765
Q ss_pred EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
+..+.. ....|...|.+++|+|++++|+||+.||+|+
T Consensus 333 ~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 333 VLNLGT-------------------------------------------LQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp EEEECC-------------------------------------------SCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred EEEEec-------------------------------------------ccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence 432210 0113456788999999999999999999999
Q ss_pred EEecccc
Q psy6984 308 LWNTLAH 314 (380)
Q Consensus 308 iw~~~~~ 314 (380)
+|++..+
T Consensus 370 iW~~~~~ 376 (380)
T 3iz6_a 370 IWAFSGH 376 (380)
T ss_dssp EEECCSS
T ss_pred EEecCCC
Confidence 9987544
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-38 Score=276.27 Aligned_cols=256 Identities=21% Similarity=0.284 Sum_probs=197.0
Q ss_pred cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEe
Q psy6984 59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWN 134 (380)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd 134 (380)
.+.+|.+.|++++|+|+|++|++|+.|+.|+|||+.+++ .+..+.+|..+|.+++|+| ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 457899999999999999999999999999999998764 4567889999999999986 489999999999999999
Q ss_pred CCCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccceEEEEEcCC------
Q psy6984 135 TLAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPD------ 204 (380)
Q Consensus 135 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~------ 204 (380)
+.... .......+|...|.+++|+|+....+|++++.|+.|++||++.... .....+|...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 87643 2233345799999999999985456799999999999999986532 2345678889999999997
Q ss_pred -----------CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 205 -----------GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 205 -----------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
+++|++|+.|+.|++||++......
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-------------------------------------------- 203 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK-------------------------------------------- 203 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE--------------------------------------------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccc--------------------------------------------
Confidence 4789999999999999986432100
Q ss_pred eeeeeeccccceeEEEEeecC----CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEE
Q psy6984 274 METPFFSLFRDVLSVAFSVDN----RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS 349 (380)
Q Consensus 274 ~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (380)
....+..|...|.+++|+|++ ++|++|+.||+|++|+........ .....+ ..+...|.+
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~----~~~~~~------------~~~~~~v~~ 267 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT----WSPKLL------------HKFNDVVWH 267 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC----CBCCEE------------EECSSCEEE
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc----hhhhhh------------hcCCCcEEE
Confidence 011223455678889999886 789999999999999864311000 000011 123456889
Q ss_pred EEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 350 LAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 350 ~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
++|+|+|++||+|+.||.|++|+..
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999999999975
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.2e-37 Score=275.79 Aligned_cols=281 Identities=21% Similarity=0.368 Sum_probs=235.7
Q ss_pred eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT 98 (380)
Q Consensus 19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 98 (380)
++.|+|++. ++|++|. |++|+|||....... ....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.
T Consensus 108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 566889864 4777665 899999998654321 1223567888999999999999999999999999999999999
Q ss_pred eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984 99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178 (380)
Q Consensus 99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 178 (380)
+..+.+|...+.+++++ +..+++|+.|+.+++||............+|...+.++.+.|++. ++++++.|+.+++|
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVW 257 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC--eeeeeeccccceEE
Confidence 99999999999988775 679999999999999998765555555568999999999999764 79999999999999
Q ss_pred eCCCce----eeEeeeCCccceEEEEEcCCCC-EEEE--EcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984 179 NLTNCK----LKINHSGHTGYLNTVTVSPDGS-LCAS--GGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 179 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
+....+ .......|...|.+++|+|.+. ++++ |+.|+.|++||+.+++....+.....+.++.|+|++.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence 997654 2345567888999999999665 4444 46899999999999999999998999999999998765332
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 313 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 313 (380)
.....++.+.+|++.+++....+.+|...|++++|+|||++|+||+.|++|++||+..
T Consensus 338 ----~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 338 ----GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ----EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ----EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 2233567899999999999888999999999999999999999999999999999754
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-37 Score=274.79 Aligned_cols=243 Identities=25% Similarity=0.487 Sum_probs=201.5
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK 97 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 97 (380)
.|++++|+|+ +++|++|+.||+|++||+.... ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRK-----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp BEEEEEECTT-SSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCc-----EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 4999999997 6899999999999999986432 234578999999999999999999999999999999999988
Q ss_pred eeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEee------CCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984 98 TTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVE------DGHSDWVSCVRFSPNHQNPIIVSAG 170 (380)
Q Consensus 98 ~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~ 170 (380)
....+. +...+.+++|+| ++.++++++.|+.|++||........... .+|...|.+++|+|+++ +|++++
T Consensus 199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s 275 (393)
T 1erj_A 199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGS 275 (393)
T ss_dssp EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS--EEEEEE
T ss_pred eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC--EEEEEe
Confidence 877765 557799999999 89999999999999999987665443331 47889999999999764 799999
Q ss_pred CCCeEEEEeCCCc------------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCce
Q psy6984 171 WDRMVKVWNLTNC------------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDII 237 (380)
Q Consensus 171 ~d~~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i 237 (380)
.|+.|++||+++. .....+.+|...|.+++++|++++|++|+.|+.|++||+.+++.+..+. |...|
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v 355 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCE
Confidence 9999999999753 2334567899999999999999999999999999999999888766553 45555
Q ss_pred EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
.+++|++.. .|+|++++|+||+.||+|++|+.
T Consensus 356 ~~v~~~~~~------------------------------------------~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 356 ISVAVANGS------------------------------------------SLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEEECSSC------------------------------------------TTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEEecCCc------------------------------------------CcCCCCCEEEEECCCCcEEECcc
Confidence 555555432 12357889999999999999985
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=293.61 Aligned_cols=290 Identities=12% Similarity=0.069 Sum_probs=214.9
Q ss_pred eEEecCcccceEEEEeCCC-----CCCeEEEeeCCCeEEEeecCCCCCC------cccccccccCCCcceEEEEEccCCC
Q psy6984 9 RGTLNGHNGWVTQIATNPK-----FPDTILSCSRDNTLIIWKLTRDDTN------YGVPQKRLKGHSHFISDIVLSSDGN 77 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~-----~~~~l~t~~~dg~v~vw~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (380)
...+.+|.+.|++++|+|. .+.+||+++.||+|++|++...... ...+...+.+|...|++++|+++ .
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~ 278 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T 278 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C
Confidence 3456788999999999985 2469999999999999998754321 11122356789999999999986 4
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeeeecccCCCeEEE--EEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEeeCCCc--Cc
Q psy6984 78 YALSGSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSV--AFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS--DW 151 (380)
Q Consensus 78 ~l~s~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~ 151 (380)
+|++|+.||.|++||+.+++ ....+..|...|.++ +|+|++ .+|+|++.|++|++||++......... +|. ..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~ 357 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSN 357 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCS
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCc
Confidence 89999999999999998764 445678999999999 568887 899999999999999987643322211 232 24
Q ss_pred EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
|.+++|+|+++ .+++++.|++|++||+++......+.+|...|++++|+|+|++|++|+.|+.|++||+.... +...
T Consensus 358 v~~v~fsp~~~--~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~ 434 (524)
T 2j04_B 358 LVPVVYCPQIY--SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGI 434 (524)
T ss_dssp CCCEEEETTTT--EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC
T ss_pred ccceEeCCCcC--eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-cccc
Confidence 78899999764 68899999999999999887766777899999999999999999999999999999986531 1111
Q ss_pred ------EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEEEEeecCC---EEEEee
Q psy6984 232 ------VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSVAFSVDNR---QIVSSS 301 (380)
Q Consensus 232 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~ 301 (380)
.....+..++|+|++..... . ....++... .+.....+.+|...|.+++|+|++. .+++|+
T Consensus 435 ~~~~~~~~~~~v~~v~~sp~g~~~~~----~-----~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 435 KNSSATQKSLRLWKWDYSIKDDKYRI----D-----SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEE----C-----CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred ccCccceeeeEEEEeccCCCCCeEEc----c-----CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 11124668888988752111 0 111122111 2444556778888999999999965 999999
Q ss_pred CCCcEEEEecc
Q psy6984 302 RDKTIKLWNTL 312 (380)
Q Consensus 302 ~dg~v~iw~~~ 312 (380)
.||+||+|++.
T Consensus 506 ~~g~vrlw~l~ 516 (524)
T 2j04_B 506 SAGLLTLEYLS 516 (524)
T ss_dssp TTSEEEEEECS
T ss_pred cCceEEEEEcc
Confidence 99999999863
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.4e-38 Score=274.46 Aligned_cols=304 Identities=17% Similarity=0.263 Sum_probs=218.8
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCC
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWD 85 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d 85 (380)
+...+.||.+.|++++|+|+ +++|++|+.||+|++|++....... .....+.+|...|.+++|+| ++++|++++.|
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcc-eecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 34567899999999999997 6899999999999999987543221 12345678999999999999 69999999999
Q ss_pred CcEEEEECCCC---------ceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceEEE-----------
Q psy6984 86 KTLRLWDLAAG---------KTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTI----------- 143 (380)
Q Consensus 86 ~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~----------- 143 (380)
+.|++||+.++ +....+..|...|.+++|+|+ +.++++++.|+.|++||+........
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999887 457778889999999999999 99999999999999999765432111
Q ss_pred -eeCCCcCcEEEEEEccCC-CCCEEEEEeCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCC----CEEEEEcCCC
Q psy6984 144 -VEDGHSDWVSCVRFSPNH-QNPIIVSAGWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDG----SLCASGGKDM 215 (380)
Q Consensus 144 -~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~ 215 (380)
....|...+.++.|+|+. ....+++++.++.+.+|+....+. ...+.+|...|.+++|+|++ ++|++++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 112567789999999962 234889999999998888877654 55667899999999999998 8999999999
Q ss_pred cEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984 216 NAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 216 ~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 294 (380)
.|++||+..+....... ..........++........ ...........++.....+....+..|...|.+++|+|++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG--RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp CEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCccccccccc--ccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 99999998764433221 11111111111211110000 0000011112223333334455566788899999999999
Q ss_pred CEEEEeeCCCcEEEEecccce
Q psy6984 295 RQIVSSSRDKTIKLWNTLAHC 315 (380)
Q Consensus 295 ~~l~s~~~dg~v~iw~~~~~~ 315 (380)
++|++|+.||.|++|++..+.
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp CCEEEEETTSCEEEEEECTTS
T ss_pred CEEEEecCCCcEEEEecCcCc
Confidence 999999999999999875543
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-36 Score=262.96 Aligned_cols=252 Identities=30% Similarity=0.478 Sum_probs=214.5
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 84 (380)
+.++...+.+|...|++++|+|+ +++|++|+.||.|++||+.... ....+.+|...|.++.|+|++++|++|+.
T Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 127 (312)
T 4ery_A 54 DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 34567788999999999999997 6899999999999999986543 23456789999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
|+.|++||+.+++....+..|..+|.+++|+|+++++++++.|+.|++||+............+...+.+++|+|+++
T Consensus 128 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 205 (312)
T 4ery_A 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-- 205 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS--
T ss_pred CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC--
Confidence 999999999999999999999999999999999999999999999999999877666655556777899999999764
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEeeeCCccce---EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL---NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 241 (380)
+|++++.|+.|++||+++.+....+.+|.... ......++++++++|+.|+.|++||+.+++.+..+
T Consensus 206 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------- 275 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL---------- 275 (312)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----------
Confidence 79999999999999999988877777776543 22333468899999999999999999877644322
Q ss_pred eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee--CCCcEEEEec
Q psy6984 242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--RDKTIKLWNT 311 (380)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~ 311 (380)
.+|...|.+++|+|++++|++++ .|++|++|+.
T Consensus 276 -------------------------------------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 276 -------------------------------------QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -------------------------------------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -------------------------------------hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 23445678899999999999987 6999999974
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=284.60 Aligned_cols=291 Identities=13% Similarity=0.209 Sum_probs=236.3
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEE
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWD 92 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd 92 (380)
+|.+.|++++|+|+ +.+|++++.||.|++|++....... .....+.+|...|.+++|+|+ +++|++++.|+.|++||
T Consensus 65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAI-NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCC-CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccc-cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 68899999999997 6899999999999999987522111 134457789999999999998 89999999999999999
Q ss_pred CCCCc------eee---eecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCC-----CcCcEEEEEE
Q psy6984 93 LAAGK------TTR---RFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-----HSDWVSCVRF 157 (380)
Q Consensus 93 ~~~~~------~~~---~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~ 157 (380)
+.+++ ... .+..|...|.+++|+|+ +..+++++.|+.|++||+............ |...+.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 98876 332 23678899999999999 789999999999999998876655444322 2678999999
Q ss_pred ccCCCCCEEEEEeCCC---eEEEEeCCCc-eeeEeee-CCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 158 SPNHQNPIIVSAGWDR---MVKVWNLTNC-KLKINHS-GHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 158 ~~~~~~~~l~s~~~d~---~v~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
+|++. .++++++.|+ .|++||+++. .....+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+
T Consensus 223 ~~~~~-~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 223 HPKNS-TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp CSSCT-TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE
T ss_pred CCCCC-CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee
Confidence 99854 3788999998 9999999985 4555566 7999999999999 9999999999999999999999988877
Q ss_pred E-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec------------------------------
Q psy6984 232 V-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS------------------------------ 280 (380)
Q Consensus 232 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 280 (380)
. |...+.+++|+|++... +.....++.+.+|++...........
T Consensus 302 ~~~~~~v~~~~~s~~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL 376 (416)
T ss_dssp ECSSSCCCCEEECTTCTTE-----EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred cCCCCceEEEEECCCCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence 4 67889999999987321 12233467788999876553221111
Q ss_pred -----cccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 281 -----LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 281 -----~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
+...+.+++|+|+|++|++++.||+|++|++.
T Consensus 377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 34567799999999999999999999999864
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.2e-37 Score=274.23 Aligned_cols=285 Identities=14% Similarity=0.141 Sum_probs=208.9
Q ss_pred cceEEEEEccCCCEEEEEeCCC-------cEEEEECCCCcee----------eeecccCCCeEEEEEeCCCCEEEEEe--
Q psy6984 65 HFISDIVLSSDGNYALSGSWDK-------TLRLWDLAAGKTT----------RRFEDHTKDVLSVAFSVDNRQIVSSS-- 125 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~-------~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~s~~-- 125 (380)
.+|++++|+||+++|++|+.|. .|++|++..+... ..+..|...|.+++++ +..+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4699999999999999998643 5999998765321 2345777888888765 55666654
Q ss_pred ---------CCCcEEEEeCCCcc-eEEEe-------eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe
Q psy6984 126 ---------RDKTIKLWNTLAHC-KFTIV-------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN 188 (380)
Q Consensus 126 ---------~d~~v~iwd~~~~~-~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 188 (380)
.|+.+++|+..... ..... ...+...+.+++|+|+++...+++++.|++|++||+++.+....
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 57789999864322 11111 12345678999999998754455677899999999999887766
Q ss_pred eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984 189 HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI 265 (380)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (380)
+. |...|.+++|+|+|+++++++.+ .+.+|+..+++.+... .+...+.+++|+|++........ .......+.
T Consensus 173 ~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~--d~~~~~~i~ 248 (365)
T 4h5i_A 173 IE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL--KKGKGIVLT 248 (365)
T ss_dssp EE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE--SSSCCEEEE
T ss_pred eC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec--CCcceeEEe
Confidence 64 77789999999999999999865 5677777777665433 35677999999999875433211 001112355
Q ss_pred EEEcCCcee----eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCC
Q psy6984 266 LYPINHGKM----ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341 (380)
Q Consensus 266 ~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (380)
.|+...... ...+..+...|++++|+|||++||+|+.|++|++||+.++. .+..+ ..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~-----------~~~~~--------~~ 309 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS-----------MSKIF--------KQ 309 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----------EEEEE--------TT
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc-----------EEEEe--------cC
Confidence 676655433 23456677889999999999999999999999999875433 22211 23
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 342 ~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
.|...|.+++|||||++||+||.|++|+||++.
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 567789999999999999999999999999985
No 73
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-36 Score=266.10 Aligned_cols=260 Identities=21% Similarity=0.314 Sum_probs=200.3
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
.....+.+|.+.|++++++|+ +.++++|+.|++|++||+.... ....+.+|...|.+++|+|++++|++++.|+
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~ 140 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQILSAGAER 140 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEEEEETTS
T ss_pred cccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC
Confidence 456688999999999999997 6899999999999999986542 2345778999999999999999999999999
Q ss_pred cEEEEECCCCceeeee---cccCCCeEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984 87 TLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDN----------RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS 153 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~----------~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 153 (380)
.|++||+.... .... ..|...|.+++|+|++ .++++++.|+.|++||.... ......+|...|.
T Consensus 141 ~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~h~~~v~ 217 (343)
T 2xzm_R 141 EIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESNVN 217 (343)
T ss_dssp CEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE--EEEEEECCSSCEE
T ss_pred EEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc--eeEEEcCccccce
Confidence 99999997433 3222 3688899999999987 78999999999999994432 2233457889999
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984 154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH 233 (380)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 233 (380)
+++|+|+++ +|++++.|+.|++||+...........+...|.+++|+|++++++++ .|+.+++||+.+++.....
T Consensus 218 ~~~~s~~g~--~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~-- 292 (343)
T 2xzm_R 218 HLSISPNGK--YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC-- 292 (343)
T ss_dssp EEEECTTSS--EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE--
T ss_pred EEEECCCCC--EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE--
Confidence 999999765 79999999999999995433222222345579999999999887655 5778999999765422110
Q ss_pred cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 234 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
. +.+.. . .......++...+.+++|+|++++|++|+.||+|++|++.
T Consensus 293 -----~--~~~~~-~------------------------~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 293 -----T--IEAEP-I------------------------TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp -----E--CCCCS-G------------------------GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred -----E--eecCc-c------------------------hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 0 00000 0 0000112345678899999999999999999999999853
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-37 Score=269.15 Aligned_cols=289 Identities=14% Similarity=0.138 Sum_probs=225.7
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCCC
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDK 86 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~ 86 (380)
......+|.+.|++++|+|+ +++|++++.||.|++|++...... .+.....+|...|.+++|+|+++ +|++|+.||
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred ceecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCcc--ccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 44455699999999999997 689999999999999998754311 12234568999999999999999 999999999
Q ss_pred cEEEEEC-CCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---------cceEEEeeCCCcCcEEE
Q psy6984 87 TLRLWDL-AAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA---------HCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 87 ~i~vwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~v~~ 154 (380)
.|++||+ .+++. ..+.. |...|.+++|+| +..+++++.|+.|++||+.. ...... ..|...+.+
T Consensus 80 ~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~ 155 (342)
T 1yfq_A 80 EILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFT 155 (342)
T ss_dssp CEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEE
T ss_pred eEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEE
Confidence 9999999 77655 66778 999999999999 99999999999999999764 322211 237788999
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEeCCC-ce--eeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-----
Q psy6984 155 VRFSPNHQNPIIVSAGWDRMVKVWNLTN-CK--LKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDG----- 225 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~----- 225 (380)
++|+|+. +++++.|+.|++||+++ .. .......|...+.+++|+| +++++++++.|+.+++|++...
T Consensus 156 ~~~~~~~----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 156 MDTNSSR----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEECSSE----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEecCCc----EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999863 88999999999999987 43 3334556788999999999 9999999999999999998765
Q ss_pred -cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984 226 -KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK 304 (380)
Q Consensus 226 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 304 (380)
+....+... ... .....+...|.+++|+|++++|++++.||
T Consensus 232 ~~~~~~~~~~------------------------------------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 232 SSKRFAFRCH------------------------------------RLN--LKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CTTCEEEECC------------------------------------CCC--TTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred cccceeeecc------------------------------------ccc--ccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 221111100 000 00012345788999999999999999999
Q ss_pred cEEEEecccceeeeEeecccceEEEeeCcccccccCCCC-CCceEEEEEecCCCEEEEEeeCCe
Q psy6984 305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD-PPMCLSLAWSTDGQTLFAGYSDNT 367 (380)
Q Consensus 305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~g~~dg~ 367 (380)
.|++||+..+..+ ..+ ..+ ...+.+++ |+|++|++|+.||.
T Consensus 274 ~i~vwd~~~~~~~-----------~~~---------~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 274 IISCWNLQTRKKI-----------KNF---------AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTTTEEE-----------EEC---------CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eEEEEcCccHhHh-----------hhh---------hcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999987544322 211 223 55677887 99999999999998
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=272.41 Aligned_cols=279 Identities=16% Similarity=0.225 Sum_probs=238.7
Q ss_pred cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA 94 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 94 (380)
|.+.|++++|+|+ +++|++++.||.|++|+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 107 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 107 TTNQVTCLAWSHD-GNSIVTGVENGELRLWNKTG------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp -CBCEEEEEECTT-SSEEEEEETTSCEEEEETTS------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCceEEEEEcCC-CCEEEEEeCCCeEEEEeCCC------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 6889999999997 68999999999999998322 1234567899999999999999999999999999999999
Q ss_pred CCceeeeecccCCC---------------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984 95 AGKTTRRFEDHTKD---------------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 95 ~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (380)
+++....+..+... +.+++|+|++ .+++++.|+.|++||+......... ..|...|.+++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPISVLEFND 257 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-CCCSSCEEEEEEET
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-ccCCCceEEEEECC
Confidence 99998888877776 9999999975 5889999999999998776544433 47888999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceE
Q psy6984 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIIT 238 (380)
Q Consensus 160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~ 238 (380)
++. +|++++.|+.|++||+++.+....+.+|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+. +...+.
T Consensus 258 ~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 258 TNK--LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTT--EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCC--EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 764 79999999999999999988877888899999999999999 99999999999999999998887775 577899
Q ss_pred EEEeecCcccceeeeeeeeeccccceEEEEcCCce--------------------eeeeeecccc--ceeEEEEeecCCE
Q psy6984 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK--------------------METPFFSLFR--DVLSVAFSVDNRQ 296 (380)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~ 296 (380)
+++|+|++.+... ...++.+.+|++..++ ....+..+.. .|.+++|+|++++
T Consensus 335 ~~~~s~~~~~l~~------~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 335 AGRISQDGQKYAV------AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp EEEECTTSSEEEE------EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred EEEEcCCCCEEEE------EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 9999998765332 2356789999998776 5666666755 8999999999999
Q ss_pred EEEeeCCCcEEEEec
Q psy6984 297 IVSSSRDKTIKLWNT 311 (380)
Q Consensus 297 l~s~~~dg~v~iw~~ 311 (380)
|++++.||.|++|++
T Consensus 409 l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEESSSCCEEEEC
T ss_pred EEEEecCceEEEEee
Confidence 999999999999985
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=256.87 Aligned_cols=280 Identities=20% Similarity=0.360 Sum_probs=233.3
Q ss_pred eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT 98 (380)
Q Consensus 19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 98 (380)
.+.|+|+++ ++||+| .|++|++||+...... ....+.+|...|++++|+|++++|++|+.|+.|++||+.+++.
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~---~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEECCCCCEE---EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 577999976 466665 5899999998754321 1223567888999999999999999999999999999999999
Q ss_pred eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984 99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178 (380)
Q Consensus 99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 178 (380)
+..+..|...+.++.+ ++..+++++.++.+++|+............+|...+.++.+.+++. ++++++.|+.|++|
T Consensus 102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVW 177 (318)
T ss_dssp EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC--EEEEEecCcceeEE
Confidence 9999999988876654 5679999999999999998766555555568899999999998764 79999999999999
Q ss_pred eCCCcee----eEeeeCCccceEEEEEcCCCCE---EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984 179 NLTNCKL----KINHSGHTGYLNTVTVSPDGSL---CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 179 d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
|+++.+. ......+...+.++.++|++.. +++++.++.|++||...........+...+..++|+|.......
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEE
Confidence 9987542 3344567788999999997663 34678899999999999998888888899999999998765332
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
.....++.+.+|++.+++....+.+|...|++++|+|++++|+||+.||+|++||+.
T Consensus 258 ----~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 ----GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ----EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ----EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 223356889999999999988999999999999999999999999999999999864
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=271.15 Aligned_cols=261 Identities=19% Similarity=0.305 Sum_probs=212.0
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEEeC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSGSW 84 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~ 84 (380)
++...+.+|.+.|++++|+|+ +.+|++|+.||.|++|++.... ......+.+|...|++++|+++ +++|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 356778999999999999998 6899999999999999986321 1223457789999999999977 999999999
Q ss_pred CCcEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEcc
Q psy6984 85 DKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 85 d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~ 159 (380)
||.|++||+.+++ ....+..|...|.+++|+|+ +..+++++.|+.|++||+.... ........|...|.+++|+|
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 9999999999887 67777889999999999999 9999999999999999987652 22333457888999999999
Q ss_pred CC-----------CCCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCC---CCEEEEEcCCCcEEEEE
Q psy6984 160 NH-----------QNPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPD---GSLCASGGKDMNAMLWD 221 (380)
Q Consensus 160 ~~-----------~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d 221 (380)
.. ...+|++++.|+.|++||++... ....+.+|...|.+++|+|+ +++|++++.|+.|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 41 23489999999999999997643 34466789999999999999 89999999999999999
Q ss_pred CCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee
Q psy6984 222 LNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS 301 (380)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 301 (380)
+..+...... .......+...+.+++|+|++++|++++
T Consensus 238 ~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 238 QDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp ESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCcccee------------------------------------------eeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 8765311000 0001112345688999999999999999
Q ss_pred CCCcEEEEeccc
Q psy6984 302 RDKTIKLWNTLA 313 (380)
Q Consensus 302 ~dg~v~iw~~~~ 313 (380)
.||.|++|++..
T Consensus 276 ~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 GDNKVTLWKENL 287 (379)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCcEEEEeCCC
Confidence 999999999864
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-36 Score=273.15 Aligned_cols=290 Identities=19% Similarity=0.261 Sum_probs=226.5
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~ 96 (380)
....++++|++..++++++.||.|++|++...... ......+.+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 34557788875445666899999999998643211 112345679999999999999 9999999999999999999987
Q ss_pred -------ceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEE
Q psy6984 97 -------KTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIV 167 (380)
Q Consensus 97 -------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~ 167 (380)
+....+.+|...|.+++|+|++ ..+++++.|+.|++||+........+. ..|...|.+++|+|++. +|+
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~ 192 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA--LIC 192 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS--CEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC--EEE
Confidence 5677888999999999999998 699999999999999988776655543 67899999999999764 689
Q ss_pred EEeCCCeEEEEeCCCceeeEee-eCCccc-eEEEEEcCCCCEEEEE---cCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 168 SAGWDRMVKVWNLTNCKLKINH-SGHTGY-LNTVTVSPDGSLCASG---GKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 168 s~~~d~~v~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
+++.|+.|++||+++.+..... .+|... +.++.|+|+++++++| +.|+.|++||+++++....
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~------------ 260 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS------------ 260 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE------------
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce------------
Confidence 9999999999999998887777 678765 8999999999999999 8999999999976532000
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE-eeCCCcEEEEeccccee-eeEe
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCK-FTIV 320 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~v~iw~~~~~~~-~~~~ 320 (380)
.. ...+...+.+++|+|++++|++ |+.||.|++|++..+.. +.
T Consensus 261 -----------------------~~----------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~-- 305 (402)
T 2aq5_A 261 -----------------------LQ----------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH-- 305 (402)
T ss_dssp -----------------------EE----------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEE--
T ss_pred -----------------------EE----------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceE--
Confidence 00 0012345778999999999864 55799999998754331 11
Q ss_pred ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
.+... .+...+.+++|+|++.++++ .++.+++|++..
T Consensus 306 ------~l~~~----------~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 306 ------YLSMF----------SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ------EEEEE----------CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred ------eeccc----------ccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 11111 13345779999999999875 466999999864
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-35 Score=269.26 Aligned_cols=286 Identities=27% Similarity=0.437 Sum_probs=225.6
Q ss_pred EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 90 (380)
...+|...|+++.+. ++++++|+.||+|++||+.... ....+.+|...|.++.+ ++++|++|+.||.|++
T Consensus 128 ~~~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 128 CRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred cccCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 345677889999884 5789999999999999986432 23456789999999988 7899999999999999
Q ss_pred EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
||+.+++....+..|...|.+++|+ +..+++++.|+.|++||+...... .....+|...|.++.+.. ..+++
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s 271 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVS 271 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET----TEEEE
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC----CEEEE
Confidence 9999999999999999999999996 459999999999999998765433 244568899999999932 37999
Q ss_pred EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~ 248 (380)
++.|+.|++||+++.+....+.+|...+.++.+ +++++++|+.|+.|++||+++++.+..+.
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------------- 333 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---------------- 333 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe----------------
Confidence 999999999999999988888999999999988 46899999999999999998876554331
Q ss_pred ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 328 (380)
.|...|.+++| ++++|++|+.||.|++||+..+..... ......+
T Consensus 334 -------------------------------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~~~~~ 378 (435)
T 1p22_A 334 -------------------------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA--PAGTLCL 378 (435)
T ss_dssp -------------------------------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS--CTTTTEE
T ss_pred -------------------------------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc--cccchhe
Confidence 22334666666 788999999999999998744321000 0000011
Q ss_pred EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
. ....|...|.+++| ++++|++|+.||.|++|++...
T Consensus 379 ~---------~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 379 R---------TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp E---------EECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred e---------eccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 1 12345567788888 8899999999999999998643
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=266.50 Aligned_cols=260 Identities=22% Similarity=0.308 Sum_probs=209.5
Q ss_pred ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEE
Q psy6984 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLW 133 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iw 133 (380)
..+.+|...|++++|+|++++|++|+.||.|++||+. +.+....+..|...|.+++|+++ +.++++++.|+.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4568999999999999999999999999999999997 55677788899999999999987 9999999999999999
Q ss_pred eCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcC-------
Q psy6984 134 NTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSP------- 203 (380)
Q Consensus 134 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~------- 203 (380)
|+..... .......|...|.+++|+|+....+|++++.|+.|++||++... ......+|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 9876542 33344578889999999997323489999999999999998763 3445678899999999999
Q ss_pred ------CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984 204 ------DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277 (380)
Q Consensus 204 ------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (380)
++.++++++.|+.|++||++.+...... ...
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~ 201 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------------------------------------------EST 201 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEE-------------------------------------------EEE
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceee-------------------------------------------EEE
Confidence 6999999999999999998754321110 112
Q ss_pred eeccccceeEEEEeec---CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec
Q psy6984 278 FFSLFRDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST 354 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 354 (380)
+..|...|.+++|+|+ +++|++++.||.|++|++..+.... .... .....+...+.+++|+|
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~------~~~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KKTL------LKEEKFPDVLWRASWSL 266 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC---------EEEE------SSSSCCSSCEEEEEECS
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc---------eeee------eccccCCCcEEEEEEcC
Confidence 2244567889999999 8999999999999999875432100 0000 11233556788999999
Q ss_pred CCCEEEEEeeCCeEEEEEeee
Q psy6984 355 DGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 355 dg~~l~~g~~dg~v~iw~~~~ 375 (380)
+|++|++++.||.|++|++..
T Consensus 267 ~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 267 SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCCEEEEESSSSEEEEEEEE
T ss_pred CCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999999874
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.9e-35 Score=266.59 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=233.2
Q ss_pred ccccCCCcce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984 58 KRLKGHSHFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136 (380)
Q Consensus 58 ~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~ 136 (380)
..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++ .+++|+.|+.|++||+.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 4577898875 55555 57899999999999999999999999999999999999999988 99999999999999988
Q ss_pred CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-----------------------eEeeeCCc
Q psy6984 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-----------------------KINHSGHT 193 (380)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----------------------~~~~~~~~ 193 (380)
+...... ..+|...|.++++++.....++++++.|+.|++||+++... .....+|.
T Consensus 192 ~~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 192 KGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTEEEEE-ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCcEEEE-ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 7655444 45789999999999755556899999999999999986542 33456787
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc
Q psy6984 194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG 272 (380)
Q Consensus 194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (380)
..+.++ +++++++++++.|+.|++||+.+++.+..+. |...+.+++|+|++.... ....++.+.+|++.++
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI------SASMDTTIRIWDLENG 342 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE------EEETTSCEEEEETTTT
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE------EEeCCCcEEEEECCCC
Confidence 777776 6789999999999999999999999888774 788899999999876532 3345788999999999
Q ss_pred eeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEE
Q psy6984 273 KMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAW 352 (380)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (380)
+....+..|...|.+++|+ +++|++++.||+|++||+......... .+...+..++|
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------~~~~~~~~~~~ 399 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------------------HHTNLSAITTF 399 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------ECTTCCCEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------cCCCCccEEEE
Confidence 9888888899999999997 689999999999999997653322111 01223446789
Q ss_pred ecCCCEEEEEeeCCeEEEEEeee
Q psy6984 353 STDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 353 s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
+|++++|++|+ ||.|++||+..
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTT
T ss_pred EeCCCEEEEec-CCeEEEEECCC
Confidence 99999999988 99999999854
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-34 Score=261.61 Aligned_cols=278 Identities=20% Similarity=0.337 Sum_probs=225.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~ 143 (380)
+.+.+.|+++ +.|++|. |+.|+|||..+++....+. .|...|++++|+|+|++|++|+.|+.|++||+.+......
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999975 5777765 9999999999998877654 6778899999999999999999999999999887665544
Q ss_pred eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
..+|...+.++.+++ .+|++|+.|+.+++||..... ....+.+|...+..+.++|+++++++++.|+.+++|+.
T Consensus 185 -~~~h~~~v~~~s~~~----~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 185 -MTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp -ECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred -EeCCCCceEEEeeCC----CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 458999999988864 379999999999999988643 44567789999999999999999999999999999999
Q ss_pred CCCcE-----EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984 223 NDGKH-----LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 223 ~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 297 (380)
..++. .....+...|.+++|+|....... ......++.+.+|++.+++....+. ....+.++.|+|+++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la---~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~l 335 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKEL 335 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE---EEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEE---EEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeE
Confidence 87652 223357788999999997654322 2233456789999999988766554 45678899999999998
Q ss_pred EEee--CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 298 VSSS--RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 298 ~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
++++ .|+.|++||+..... +..+ ..|...|.+++|+|||++|++|+.|++|+|||+.
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~-----------v~~l---------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAK-----------VAEL---------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCE-----------EEEE---------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEecCCCEEEEEECCCCcE-----------EEEE---------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 8765 689999998754332 2222 3466779999999999999999999999999985
No 83
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.5e-35 Score=265.42 Aligned_cols=288 Identities=16% Similarity=0.225 Sum_probs=225.9
Q ss_pred EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 90 (380)
.+.+| ..+....++|+ +++|++++.||.|++|++.... ....+.+|...|++++|+|++++|++|+.|+.|++
T Consensus 93 ~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 165 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI 165 (420)
T ss_dssp TSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence 34444 34444457776 6899999999999999976432 23345789999999999999999999999999999
Q ss_pred EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC--CCcCcEEEEEEccC--------
Q psy6984 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED--GHSDWVSCVRFSPN-------- 160 (380)
Q Consensus 91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~-------- 160 (380)
||+.+++....+..|...|.+++|+|+++.+++++.|+.|++||+.+......... .+...+.++++.|.
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 166 WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 99999999999999999999999999999999999999999999887665544432 34556666666432
Q ss_pred -----------CCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE
Q psy6984 161 -----------HQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKH 227 (380)
Q Consensus 161 -----------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 227 (380)
....+|++++.|+.|++||+++.+...... .|...+.+++|+|+++ +|++|+.|+.|++||+++++.
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 123478999999999999999877665554 5788999999999999 999999999999999998753
Q ss_pred -EEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee---------eeeeeccccceeEEEEeecCC
Q psy6984 228 -LHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM---------ETPFFSLFRDVLSVAFSVDNR 295 (380)
Q Consensus 228 -~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~s~~~~ 295 (380)
+..+. +...+..+.+. ++.+ +.....++.+.+|++..... ...+..+...+.+++|+|+++
T Consensus 326 ~~~~~~~~~~~~v~~~~~~-~~~~------l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 326 PVGEFLINEGTPINNVYFA-AGAL------FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp CSEEEEESTTSCEEEEEEE-TTEE------EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred chhhhhccCCCCceEEEeC-CCCE------EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 44443 56677777654 4432 22334577889999876321 223445667899999999999
Q ss_pred ---EEEEeeCCCcEEEEecc
Q psy6984 296 ---QIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 296 ---~l~s~~~dg~v~iw~~~ 312 (380)
.+++++.+|.+++|++.
T Consensus 399 ~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 399 SNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSCEEEEEETTTEEEEEESC
T ss_pred CcceEEEEcCCceEEEEecc
Confidence 77788889999999853
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=265.46 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=237.4
Q ss_pred CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeeec------------
Q psy6984 37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKTTRRFE------------ 103 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------------ 103 (380)
.++.+++|++.... ....+.+|...|++++|+| ++++|++|+.||.|++||+.+++....+.
T Consensus 21 ~~~~~~v~~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 21 AESTRRVLGLELNK-----DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHHTEEECT-----TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred ccCcceeeccccCc-----ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 34567888775432 2344678999999999999 99999999999999999999876655443
Q ss_pred -ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC-CCCEEEEEeCCCeEEEEeC
Q psy6984 104 -DHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH-QNPIIVSAGWDRMVKVWNL 180 (380)
Q Consensus 104 -~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~v~iwd~ 180 (380)
.|...|.+++|+| ++..+++++.|+.|++||+.......... +...+.++.+.|.. ...++++++.|+.|++||+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 5899999999999 77899999999999999988766555443 56678999999865 3347899999999999999
Q ss_pred CCceeeEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-EEEEE----------------EecCceEEEEe
Q psy6984 181 TNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTL----------------VHNDIITALCF 242 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~----------------~~~~~i~~~~~ 242 (380)
++.+....+.+|...|.+++|+|+++ ++++++.|+.|++||++.+. .+..+ .+...+.+++|
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 99888888889999999999999998 58999999999999998765 22222 36778999999
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-----cceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-----RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 317 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 317 (380)
+|++.+.. ....++.+.+|++..++......... ..+........+..+++++.|+.|++|++..+..+
T Consensus 254 ~~~~~~l~------~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 254 TSDGLHLL------TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp CTTSSEEE------EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCCEEE------EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 99876533 23356789999998876544332221 11112222334566777788999999987554332
Q ss_pred eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
. .+ ..|...|.+++|+|+|++|++|+.||.|++|++...
T Consensus 328 ~-----------~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 328 T-----------ML---------KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp E-----------EE---------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred e-----------ee---------ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 2 11 234567889999999999999999999999998754
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-35 Score=257.73 Aligned_cols=274 Identities=16% Similarity=0.231 Sum_probs=205.2
Q ss_pred ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEE
Q psy6984 58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIK 131 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~ 131 (380)
..+.+|...|++++|+|++++|++|+.||.|++||+.++ +....+..|...|.+++|+| ++.++++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346799999999999999999999999999999999876 45667788999999999999 699999999999999
Q ss_pred EEeCCCcc--------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-------------e
Q psy6984 132 LWNTLAHC--------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-------------S 190 (380)
Q Consensus 132 iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------------~ 190 (380)
+||+.... ........|...|.+++|+|+....+|++++.|+.|++||+++.+..... .
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99986542 23344457889999999999732458999999999999999875432211 2
Q ss_pred CCccceEEEEEcCC---CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984 191 GHTGYLNTVTVSPD---GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267 (380)
Q Consensus 191 ~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (380)
.|...+.+++|+|+ +.++++++.|+.+.+|+...++....
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 207 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA------------------------------------- 207 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE-------------------------------------
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee-------------------------------------
Confidence 57788999999997 89999999999998877655432110
Q ss_pred EcCCceeeeeeeccccceeEEEEeecC----CEEEEeeCCCcEEEEecccceeeeEeecccceE----------------
Q psy6984 268 PINHGKMETPFFSLFRDVLSVAFSVDN----RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM---------------- 327 (380)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~---------------- 327 (380)
..+..|...|.+++|+|++ ++|++|+.||.|++||+..+.............
T Consensus 208 --------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 208 --------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp --------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred --------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence 1122345678899999998 899999999999999976532111000000000
Q ss_pred --------EE--eeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 328 --------VE--ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 328 --------~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
.. .............|...|.+++|+|+|++|++|+.||.|+||++...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 00 00000011122356778999999999999999999999999998743
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=247.72 Aligned_cols=278 Identities=20% Similarity=0.338 Sum_probs=220.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~ 143 (380)
+.++++||+++ +|++| .|+.|+|||+.+++.++.+. .|...|.+++|+|+++++++|+.|+.|++||..+......
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 36789999876 66665 59999999999999887664 6778899999999999999999999999999887765544
Q ss_pred eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
. .+|...+.++.+.+ .++++++.++.+++|+..... ......+|...+..+.++++++++++++.|+.|++||+
T Consensus 105 ~-~~h~~~~~~~~~~~----~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 105 M-TSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp E-ECCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred e-cCccceEEEeecCC----CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 4 47888887776654 379999999999999987653 44566789999999999999999999999999999999
Q ss_pred CCCcEE-----EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984 223 NDGKHL-----HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 223 ~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 297 (380)
++++.. ....+...+..+.++|....... .........+.+|+........ ...+...+..+.|+|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE---EEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEE---EEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccce
Confidence 876532 22245677889999887654321 2233455678899987766543 34556778999999999988
Q ss_pred EEee--CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 298 VSSS--RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 298 ~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
++++ .|+.|++||+.++.. +..+ ..|...|.+++|+|||++||+|+.||.|+|||+.
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~-----------~~~l---------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAK-----------VAEL---------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCE-----------EEEE---------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEcCCCEEEEEECCCCcE-----------EEEE---------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 7754 799999998754332 2222 2466779999999999999999999999999984
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.6e-36 Score=264.33 Aligned_cols=252 Identities=14% Similarity=0.142 Sum_probs=194.4
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEe-----------eCCCeEEEeecCCCCCCcc----cccccccCCCcceEEEEEcc
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSC-----------SRDNTLIIWKLTRDDTNYG----VPQKRLKGHSHFISDIVLSS 74 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~-----------~~dg~v~vw~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~ 74 (380)
.+|.+|...|.++++.++ .+++| +.|+.+|+|++........ ........+...+.+++|+|
T Consensus 67 ~~l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp EECCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred EEccCCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 467899999999987643 45544 4678899998765432211 11122345667799999999
Q ss_pred CCCEEEEE--eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE
Q psy6984 75 DGNYALSG--SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV 152 (380)
Q Consensus 75 ~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v 152 (380)
||++|+++ +.|+.|+|||+.+++.+..+. |..+|.+++|+|||+++++++.++.+.+|..............|...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 99998755 478999999999999888875 778899999999999999998766554444333333444556788889
Q ss_pred EEEEEccCCCCCEEEEEeCCC----eEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984 153 SCVRFSPNHQNPIIVSAGWDR----MVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224 (380)
Q Consensus 153 ~~~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 224 (380)
.+++|+|++. .+++++.|+ .++.|++..... .....+|...|++++|+|+|++||+|+.|+.|+|||+.+
T Consensus 223 ~~v~fspdg~--~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 223 SKINFIADDT--VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEEETTE--EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCCC--EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 9999999865 678887776 688899876543 234568889999999999999999999999999999988
Q ss_pred CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984 225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK 304 (380)
Q Consensus 225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 304 (380)
++.+..+ +.+|...|++++|||||++|+|||.|+
T Consensus 301 ~~~~~~~----------------------------------------------~~gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 301 LSMSKIF----------------------------------------------KQAHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp TEEEEEE----------------------------------------------TTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred CcEEEEe----------------------------------------------cCcccCCEEEEEECCCCCEEEEEeCCC
Confidence 7654332 123556788999999999999999999
Q ss_pred cEEEEeccc
Q psy6984 305 TIKLWNTLA 313 (380)
Q Consensus 305 ~v~iw~~~~ 313 (380)
+||||++..
T Consensus 335 tvrvw~ip~ 343 (365)
T 4h5i_A 335 TIHIIKLPL 343 (365)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEcCC
Confidence 999999743
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=272.43 Aligned_cols=319 Identities=12% Similarity=0.186 Sum_probs=217.8
Q ss_pred eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEE----EeecCCCCCCcccccccc-cCCCcceEEEEEcc-CCCE
Q psy6984 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLI----IWKLTRDDTNYGVPQKRL-KGHSHFISDIVLSS-DGNY 78 (380)
Q Consensus 5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~----vw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~ 78 (380)
......++..|...+..+.+.|... .+...+.++... .|+... .....+ .+|...|++++|+| ++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~~p~~~-~~~~f~~~~~~~~~~~~w~~~g------~~~~~~~~~h~~~V~~~~~s~~~~~~ 78 (437)
T 3gre_A 6 HHHGEGDVESIEKFLSTFKILPPLR-DYKEFGPIQEIVRSPNMGNLRG------KLIATLMENEPNSITSSAVSPGETPY 78 (437)
T ss_dssp --------CCCGGGTTCC-CCCCGG-GCGGGCCCCCCCCCCCGGGCCC------CEEEEECTTTTSCEEEEEEECSSSCE
T ss_pred cccCCCChhHHHHHhccCCCCCChh-chhhcCCccccccccccccccc------eEEeeeccCCCCceEEEEECCCCCCE
Confidence 3445566667777777776665421 111112222111 476432 123345 78999999999999 9999
Q ss_pred EEEEeCCCcEEEEECCC---Cc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CcceEEEe-----
Q psy6984 79 ALSGSWDKTLRLWDLAA---GK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---AHCKFTIV----- 144 (380)
Q Consensus 79 l~s~~~d~~i~vwd~~~---~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---~~~~~~~~----- 144 (380)
|++|+.||.|++||+.+ +. ....+ .|...|.+++|+|++..+++++.|+.|++||+. .+......
T Consensus 79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i 157 (437)
T 3gre_A 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI 157 (437)
T ss_dssp EEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence 99999999999999876 43 22222 589999999999999999999999999999973 22221111
Q ss_pred ---e-CC--CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCc
Q psy6984 145 ---E-DG--HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMN 216 (380)
Q Consensus 145 ---~-~~--~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~ 216 (380)
. .. +...+.++.+.......+|++++.|+.|++||+++.+....+.+ |...|.+++|+|++++|++|+.|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 237 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI 237 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence 0 11 45567777755434455899999999999999999888877777 8899999999999999999999999
Q ss_pred EEEEECCCCcEEEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984 217 AMLWDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 217 i~i~d~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 294 (380)
|++||+++++.+..+. +...+.+++|+| .|+|++
T Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------------~~s~~~ 273 (437)
T 3gre_A 238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQ--------------------------------------------FYGKNS 273 (437)
T ss_dssp EEEEETTTTEEEEEEBCTTCEEEEEEEECT--------------------------------------------TTCTTE
T ss_pred EEEEEcCCccEEEEEecCCCCceEEEEecc--------------------------------------------ccCCCc
Confidence 9999999887665542 222333333332 234568
Q ss_pred CEEEEeeCCCcEEEEecccceeeeEeecccceEE-EeeCccc---c--cccCCCCCCceEEEEEecCCCEEEEEeeCCeE
Q psy6984 295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV-EELRPDV---V--SQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI 368 (380)
Q Consensus 295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v 368 (380)
.+|++|+.||+|++||+..+.....+........ ..+.+.. . ......+...+.+++|+ ++++|++|+.||.|
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 8999999999999999877665544432211100 0011100 0 00112266778899999 88999999999999
Q ss_pred EEEEeeee
Q psy6984 369 RVWQVSVT 376 (380)
Q Consensus 369 ~iw~~~~~ 376 (380)
++||+...
T Consensus 353 ~~wd~~~~ 360 (437)
T 3gre_A 353 VMFSLNEL 360 (437)
T ss_dssp EEEETTCG
T ss_pred EEEECCCc
Confidence 99998644
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-34 Score=258.81 Aligned_cols=283 Identities=25% Similarity=0.408 Sum_probs=240.3
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
++.++...+.+|.+.|+++.++ ++++++|+.||+|++|++.... ....+.+|...|.++.++ ++++++|+
T Consensus 147 ~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 147 VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRCMHLH--EKRVVSGS 216 (445)
T ss_dssp TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEEEEec--CCEEEEEe
Confidence 4556778899999999999997 3589999999999999986532 234567899999999985 67899999
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (380)
.|+.|++||+.+++....+..|...|.+++| ++..+++++.|+.|++||.......... .+|...|.++.+. .
T Consensus 217 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~----~ 289 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQFD----G 289 (445)
T ss_dssp TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEEC----S
T ss_pred CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe-cCCCCceEEEEEC----C
Confidence 9999999999999999999999999999998 7889999999999999998776554443 4788899999993 2
Q ss_pred CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE----ecCceEE
Q psy6984 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV----HNDIITA 239 (380)
Q Consensus 164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~i~~ 239 (380)
..+++++.|+.|++||+++.+....+.+|...+.++.+ +++++++++.|+.|++||+.+++.+..+. +...+.+
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE
Confidence 37999999999999999999888888899988888876 46799999999999999999999888875 6778999
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee-----eccccceeEEEEeecCCEEEEeeCCCc----EEEEe
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-----FSLFRDVLSVAFSVDNRQIVSSSRDKT----IKLWN 310 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~----v~iw~ 310 (380)
++|++. + +.....++.+.+|++..++....+ ..+...|++++|+|++.++++|+.||+ |.+||
T Consensus 368 ~~~~~~--~------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 368 LQFNKN--F------VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSS--E------EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEECCC--E------EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence 998643 1 223345788999999998877666 356678999999999999999999998 99998
Q ss_pred ccc
Q psy6984 311 TLA 313 (380)
Q Consensus 311 ~~~ 313 (380)
+..
T Consensus 440 f~~ 442 (445)
T 2ovr_B 440 FDV 442 (445)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=255.03 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=220.9
Q ss_pred cccccCCCcceEEEEEccC---CCEEEEEeCCCcEEEEECCC-Ccee-eeecccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy6984 57 QKRLKGHSHFISDIVLSSD---GNYALSGSWDKTLRLWDLAA-GKTT-RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIK 131 (380)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~ 131 (380)
...+.+|...|++++|+|+ |++|++|+.||.|++||+.+ ++.. ..+..|...|.+++|+|+++++++++.|+.|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3456899999999999999 69999999999999999987 5444 67788999999999999999999999999999
Q ss_pred EEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984 132 LWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 132 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
+||+........ ..|...|.+++|++.....+|++++.|+.|++||+++.+....+..+. .+.++.+. +..++++
T Consensus 112 iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 186 (368)
T 3mmy_A 112 MWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVA 186 (368)
T ss_dssp EEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEE
T ss_pred EEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEE
Confidence 999887665543 358889999999444344579999999999999999887776666554 45555555 4588889
Q ss_pred cCCCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce---eeeeeecccc--
Q psy6984 212 GKDMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK---METPFFSLFR-- 283 (380)
Q Consensus 212 ~~d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 283 (380)
+.++.+.+|++.......... .......+++.++....... +.....++.+.+|++.... ....+..+..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE--EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe--EEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 999999999998765443332 23445566665544331111 3344567888999988763 3334444443
Q ss_pred ----------ceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEe
Q psy6984 284 ----------DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS 353 (380)
Q Consensus 284 ----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 353 (380)
.|.+++|+|++++|++|+.||.|++||+..+..+ ..+ ..+...+.+++|+
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~---------~~~~~~v~~~~~s 324 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-----------KTS---------EQLDQPISACCFN 324 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----------EEC---------CCCSSCEEEEEEC
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE-----------EEe---------cCCCCCceEEEEC
Confidence 6999999999999999999999999987544322 211 2345578899999
Q ss_pred cCCCEEEEEeeCCeEEEEE
Q psy6984 354 TDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 354 ~dg~~l~~g~~dg~v~iw~ 372 (380)
|+|++|++|+.|+..+.|+
T Consensus 325 ~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 325 HNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TTSSCEEEEECCCSTTCGG
T ss_pred CCCCeEEEEeccccccccc
Confidence 9999999999988554443
No 91
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-34 Score=275.83 Aligned_cols=265 Identities=25% Similarity=0.366 Sum_probs=206.7
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT 87 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 87 (380)
....+.+|.+.|++++++|+ +.+|++|+.||+|++||+.... ....+.+|...|.+++|+|++++|++|+.|+.
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~ 495 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGV-----STRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495 (694)
T ss_dssp EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc-----ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 45678999999999999998 6899999999999999986432 23457899999999999999999999999999
Q ss_pred EEEEECCCCceeeee---cccCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 88 LRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDN--RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 88 i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~--~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
|++||.......... ..|...|.+++|+|++ ..+++++.|+.|++||+........ ..+|...|.+++|+|++.
T Consensus 496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-LAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEeCCCC
Confidence 999998655333222 4688899999999987 5899999999999999876554433 458999999999999764
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
+|++++.|+.|++||+++.+...... +...+.+++|+|++.++++++ ++.|++||+++++.+..+...........
T Consensus 575 --~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 575 --LCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp --EEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------
T ss_pred --EEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc
Confidence 79999999999999999988766554 346799999999998887765 55699999999887766532211100000
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
...+. .....+...+.+++|+|+|++|++|+.||+|++|++
T Consensus 651 ~~~~~----------------------------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 651 DNSGP----------------------------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccccc----------------------------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 00000 000011123678999999999999999999999985
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=267.01 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=226.1
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 93 (380)
+-..+|.+++|+|+ +.++||++.|++|+ +... .+.+.+|...|.+++|+|+| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~--------~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARD-GTLYLTTFPDISIG--QPKY--------AKDINCNSKNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CCSSSSCCEEECTT-SCEEEECSSSEEEE--EECC--------CSCCSSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred HhhccEEEEEECCC-CCEEEEEcCCceee--cccc--------cceecCCCccEEEEEECCCC-------CcceEEEEeC
Confidence 45689999999998 79999999999999 5321 12347899999999999999 4555555554
Q ss_pred CCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-----cEEEEEEccCCCCCEEE
Q psy6984 94 AAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-----WVSCVRFSPNHQNPIIV 167 (380)
Q Consensus 94 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~ 167 (380)
. ....+. .|...|.+++|+|+|..+|+++.||.+++||... ..... . |.. .+.+++|+|+++ +|+
T Consensus 75 ~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~--~LA 145 (588)
T 2j04_A 75 Q---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIES--SIV 145 (588)
T ss_dssp C---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSS--CEE
T ss_pred C---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCC--EEE
Confidence 3 222222 4578899999999999999999999999999533 22222 3 443 599999999876 699
Q ss_pred EEeCCCeEEEEeCCCcee-------eEee----eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE---EEEE--
Q psy6984 168 SAGWDRMVKVWNLTNCKL-------KINH----SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH---LHTL-- 231 (380)
Q Consensus 168 s~~~d~~v~iwd~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-- 231 (380)
+|+.||+|++||+.+... ...+ .+|...|.+++|+|+| +++++.|+.+++||+..+.. ...+
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 999999999999988642 2333 5678899999999999 78889999999999988763 2344
Q ss_pred EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEE--eecCCEEEEeeCCCcEEEE
Q psy6984 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAF--SVDNRQIVSSSRDKTIKLW 309 (380)
Q Consensus 232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw 309 (380)
.|...|.+++|+ + ... +.. ..+.+.+|+...++......+|...+.+++| +|++..|+++++||+ ++|
T Consensus 224 ~h~~~V~svaFs-g-~~L------ASa-~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 224 ASRRKITDLKIV-D-YKV------VLT-CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp CCSSCCCCEEEE-T-TEE------EEE-CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred cccCcEEEEEEE-C-CEE------EEE-eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 356789999998 3 221 111 2478999999988885555588899999999 999999999999999 999
Q ss_pred ecccceeeeEeecccc------eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee
Q psy6984 310 NTLAHCKFTIVDLETK------KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS 364 (380)
Q Consensus 310 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~ 364 (380)
.... +. +..... +.+.-....-.......+...|.+++|||||+.+|++++
T Consensus 294 ~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 294 LEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred eecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 8641 11 111110 000000000000111122445889999999999998763
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.7e-34 Score=253.06 Aligned_cols=264 Identities=16% Similarity=0.194 Sum_probs=207.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~ 137 (380)
+..|...|++++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++++++++.|+.|++||+..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34588899999999999999999999999999999887 7888889999999999999999999999999999999866
Q ss_pred cceE-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCCCCEEEEEc
Q psy6984 138 HCKF-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 138 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 212 (380)
.... ......|...|.+++|+|++. +|++++.|+.|++||++... ......+|...|.+++|+|++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 5433 233357888999999999754 79999999999999998765 2233356888999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
.|+.+++||+......... . + ..+. .....++....+..+...+.+++|+|
T Consensus 162 ~dg~i~~~d~~~~~~~~~~------~-----~-~~~~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERP------A-----P-TPWG-----------------SKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp TTSCEEEEECCCTTTSCCC------C-----C-BTTB-----------------SCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred CCCCEEEEEcccccccccc------c-----c-cccc-----------------cccchhhheEecCCCCCeEEEEEECC
Confidence 9999999998643210000 0 0 0000 00112223333445667899999999
Q ss_pred cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
++++|++++.||.|++||+..+..+.. + ..+...+.+++|+|+|++|++| .|+.|++|+
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~---------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKKMAVAT-----------L---------ASETLPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGTTEEEE-----------E---------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceeEE-----------E---------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 999999999999999998754432221 1 1234457899999999999887 899999999
Q ss_pred eee
Q psy6984 373 VSV 375 (380)
Q Consensus 373 ~~~ 375 (380)
+..
T Consensus 272 ~~~ 274 (372)
T 1k8k_C 272 YDS 274 (372)
T ss_dssp EET
T ss_pred ccC
Confidence 975
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=253.47 Aligned_cols=252 Identities=17% Similarity=0.283 Sum_probs=206.7
Q ss_pred EeEEecC-cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 8 LRGTLNG-HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 8 ~~~~~~~-h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
+...+.. |.+.|++++|+|+ +++|++|+.||.|++|++.... ....+.+|...|.++.| ++++|++|+.|+
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 196 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQARVGCLSW--NRHVLSSGSRSG 196 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred EeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCe-----EEEEecCCCCceEEEEE--CCCEEEEEcCCC
Confidence 3444443 8999999999997 6899999999999999986542 23456789999999999 568999999999
Q ss_pred cEEEEECC-CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 87 TLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 87 ~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
.|++||+. .+.....+..|...|.+++|+|++..+++++.|+.|++||+......... ..|...|.+++|+|++.. +
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~-l 274 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAVKAVAWCPWQSN-L 274 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-CCCSSCCCEEEECTTSTT-E
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-cCCcceEEEEEECCCCCC-E
Confidence 99999998 56677888899999999999999999999999999999998876554443 468889999999997654 6
Q ss_pred EEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984 166 IVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS--GGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241 (380)
Q Consensus 166 l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 241 (380)
+++++ .|+.|++||+.+.+....+. +...+.+++|+|+++++++ |+.|+.|++||+.+++.....
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~---------- 343 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV---------- 343 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE----------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE----------
Confidence 77765 79999999999887766664 5678999999999999998 558999999998765432211
Q ss_pred eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984 242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 315 (380)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 315 (380)
.+..|...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 344 -----------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 344 -----------------------------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp -----------------------------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred -----------------------------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 112344568899999999999999999999999976543
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-35 Score=260.26 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=169.9
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
++...+.+|.+.|++++|+|+ +++|++++.||+|++|++..... ..+...+.+|...|.+++|+|++++|++++.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 122 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGT--WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR 122 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------C--CCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred EEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCc--eeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence 677889999999999999998 68999999999999999875431 112345678999999999999999999999999
Q ss_pred cEEEEECCCCc---eeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-----------------ceEEEee
Q psy6984 87 TLRLWDLAAGK---TTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-----------------CKFTIVE 145 (380)
Q Consensus 87 ~i~vwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-----------------~~~~~~~ 145 (380)
.|++||+.+++ ....+.. |...|.+++|+|+++++++++.|+.|++||+... .......
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (377)
T 3dwl_C 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY 202 (377)
T ss_dssp CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence 99999999876 3666777 9999999999999999999999999999997421 1122222
Q ss_pred CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221 (380)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 221 (380)
+|...|.+++|+|+++ +|++++.|+.|++||+.+.+. ...+.+|...|.+++|+|++++|++++.++.+ +|+
T Consensus 203 -~~~~~v~~~~~sp~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 203 -PSGGWVHAVGFSPSGN--ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp -CCSSSEEEEEECTTSS--CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred -cCCceEEEEEECCCCC--EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 7889999999999865 699999999999999998776 66778899999999999999999999877665 676
Q ss_pred CC
Q psy6984 222 LN 223 (380)
Q Consensus 222 ~~ 223 (380)
..
T Consensus 279 ~~ 280 (377)
T 3dwl_C 279 GN 280 (377)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 96
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-34 Score=257.62 Aligned_cols=275 Identities=15% Similarity=0.131 Sum_probs=214.4
Q ss_pred EeEEecCcccceEEEEeCCC---CC---CeEEEeeCCCeEEEeecCCCCCCcccccccccCC-----CcceEEEEEc---
Q psy6984 8 LRGTLNGHNGWVTQIATNPK---FP---DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH-----SHFISDIVLS--- 73 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~---~~---~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~--- 73 (380)
+...+.+|...|+++.|+|+ .+ .+|++++.||.|++|++.............+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 56778899999999999986 25 6999999999999999876543222223456677 5889999999
Q ss_pred -cCCCE-EEEEeCCCcEEEEECCC------Cceee-----ee-------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984 74 -SDGNY-ALSGSWDKTLRLWDLAA------GKTTR-----RF-------EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133 (380)
Q Consensus 74 -~~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw 133 (380)
|++++ |++++.|+.|++||+.+ ++.+. .+ ..|...|.+++|+|++ .+++++.|+.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 99999999999999988 66655 66 4488899999999999 99999999999999
Q ss_pred eCCCcceEEEeeCC---C---cCcEEEEEEccCCCCCEEEEEeCC---CeEEEEeCCCceeeEeeeC-------------
Q psy6984 134 NTLAHCKFTIVEDG---H---SDWVSCVRFSPNHQNPIIVSAGWD---RMVKVWNLTNCKLKINHSG------------- 191 (380)
Q Consensus 134 d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~------------- 191 (380)
|+........+. . | ...+.+++|+|++. +|++++.| +.|++||+++.+....+.+
T Consensus 213 d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~--~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 213 ELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS--LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp ETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT--EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred ECCCCceeEEEe-ccccccccCCccceEEECCCCC--EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 988765554443 4 7 88899999999754 78999999 9999999999888888877
Q ss_pred CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH 271 (380)
Q Consensus 192 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (380)
|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..... ...... + ...
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~------------~-------~~~ 344 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD------DIEIEE------------D-------ILA 344 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG------GCSSGG------------G-------CCC
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccC------cccchh------------h-------hhc
Confidence 999999999999999999999999999999998877655531000 000000 0 000
Q ss_pred ceeeeeeeccccceeEEEEeecC----------CEEEEeeCCCcEEEEecc
Q psy6984 272 GKMETPFFSLFRDVLSVAFSVDN----------RQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~v~iw~~~ 312 (380)
+. ......|...|.+++|+|++ ++|++++.||.|++|++.
T Consensus 345 g~-~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 345 VD-EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp BC-TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cc-cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 10 01112235679999999998 799999999999999864
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=250.68 Aligned_cols=290 Identities=17% Similarity=0.226 Sum_probs=229.1
Q ss_pred eEEeEEecCcccceEEEEeCCCC--CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKF--PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
.+....+.+|.+.|++++|+|+. +++|++|+.||.|++|++..... .....+.+|...|.+++|+|++++|++++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 34556788999999999999985 58999999999999999875221 12245678999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEE--eCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF--SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
.|+.|++||+.+++... +..|...|.+++| +|++.++++++.|+.|++||+.......... .+ ..+.++.+.+.
T Consensus 106 ~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~- 181 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIYP- 181 (368)
T ss_dssp TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEETT-
T ss_pred CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecCC-
Confidence 99999999999887666 5679999999999 8999999999999999999987765554443 23 34666666542
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCE----EEEEcCCCcEEEEECCCC---cEEEEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSL----CASGGKDMNAMLWDLNDG---KHLHTLV 232 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~ 232 (380)
.+++++.++.+++|+++........ ..+...+.++.+.++... +++++.|+.+++||+... ..+..+.
T Consensus 182 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 182 ---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred ---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 6788889999999999875443322 223345566666655544 999999999999999876 3333332
Q ss_pred -ecC------------ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984 233 -HND------------IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299 (380)
Q Consensus 233 -~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 299 (380)
+.. .+.+++|+|++.+.. ....++.+.+|++..++....+..|...|.+++|+|++++|++
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~------s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA------TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEE------EEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred eeecccccccccccccceEEEEEecCCCEEE------EEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence 222 699999999886532 2345788999999999888888888899999999999999999
Q ss_pred eeCCCcEEEEec
Q psy6984 300 SSRDKTIKLWNT 311 (380)
Q Consensus 300 ~~~dg~v~iw~~ 311 (380)
++.|+..+.|+.
T Consensus 333 ~s~d~~~~~~~~ 344 (368)
T 3mmy_A 333 ASSYDWSKGHEF 344 (368)
T ss_dssp EECCCSTTCGGG
T ss_pred Eecccccccccc
Confidence 999987666553
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-33 Score=248.87 Aligned_cols=303 Identities=13% Similarity=0.134 Sum_probs=206.2
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCC
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDK 86 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~ 86 (380)
....+.+|.+.|++++|+|+ +.+|++|+.+ .+++|++...... ...+...+..+.+.++++++ ++++.|+
T Consensus 11 ~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~-~~~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQD-QSCLILSTLK-SFEIYNVHPVAHI-------MSQEMRHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp --------CCCCCEEEECTT-SSEEEEECSS-EEEEEEETTEEEE-------EEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred CccccccCCCceEEEEECCC-CCEEEEEcCC-EEEEEecCCccee-------eeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence 34466899999999999998 6788888876 5789997532111 11122247788899888887 5678889
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-ceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
.|++||+.+++.+..+. +..+|.+++|+++. ++.+ .|+.+++||+... .....+.. ....+++++ . +
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~---~-~ 149 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN---G-L 149 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET---T-E
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc---c-E
Confidence 99999999999988876 66789999998764 3333 4789999998765 22222111 334456666 2 4
Q ss_pred EEE--EeCCCeEEEEeCCCce----------------eeEeeeCCccceEEEEEcCCCCEEEEEcCCCc-EEEEECCCCc
Q psy6984 166 IVS--AGWDRMVKVWNLTNCK----------------LKINHSGHTGYLNTVTVSPDGSLCASGGKDMN-AMLWDLNDGK 226 (380)
Q Consensus 166 l~s--~~~d~~v~iwd~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~ 226 (380)
++. |+.||.|++||+++.. ....+.+|...|.+++|+|+|++|++|+.|+. |++||+++++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 444 6889999999998754 14567899999999999999999999999998 9999999887
Q ss_pred EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI 306 (380)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 306 (380)
.+..+... .|...|.+++|+|++++|++++.|++|
T Consensus 230 ~~~~~~~g---------------------------------------------~h~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 230 LVREFRRG---------------------------------------------LDRADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp EEEEEECT---------------------------------------------TCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred EEEEEEcC---------------------------------------------CCCCcEEEEEECCCCCEEEEEECCCEE
Confidence 65443200 033467889999999999999999999
Q ss_pred EEEecccceeeeEeecccceEEEeeCccc----ccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984 307 KLWNTLAHCKFTIVDLETKKMVEELRPDV----VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS 377 (380)
Q Consensus 307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~ 377 (380)
++|++..+........... ......... ..............++|++||+.|++++.||.+++|++....
T Consensus 265 ~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGW-INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEESSCCSCCCSEETTTT-EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEccCCCCcccccccce-eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999865421111000000 000000000 000001111223468999999999999999999999987544
No 99
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-33 Score=252.66 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=193.5
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 91 (380)
+.+|.+.|+++.|+|..+.+|++++.||+|++||+.... . .......+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-I--QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-E--EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-e--EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 347999999999999546899999999999999987421 1 1112234556889999999999999999999999999
Q ss_pred ECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCC----cceEEEeeCCCcCcEEEEEEcc-CCCCCE
Q psy6984 92 DLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLA----HCKFTIVEDGHSDWVSCVRFSP-NHQNPI 165 (380)
Q Consensus 92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 165 (380)
|+ +++....+..|...|.+++|+|+++ ++++++.|+.|++||+.. ....... +|...|.+++|+| ++. +
T Consensus 191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~--~ 265 (383)
T 3ei3_B 191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDST--K 265 (383)
T ss_dssp ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSC--E
T ss_pred EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCC--E
Confidence 99 5778888899999999999999999 999999999999999875 3333333 5888999999999 654 7
Q ss_pred EEEEeCCCeEEEEeCCCceeeEeeeCCc-----------------cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 166 IVSAGWDRMVKVWNLTNCKLKINHSGHT-----------------GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
|++++.|+.|++||+++.+....+.+|. ..+..++++|++++ +++.|+.|++||+.+++.+
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~ 343 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV 343 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence 8999999999999998766544443332 23444667777776 7789999999999888765
Q ss_pred EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984 229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL 308 (380)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 308 (380)
..+... .+...+..++|+|++++|++|+ ||.|++
T Consensus 344 ~~l~~~---------------------------------------------~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 344 HQLRDP---------------------------------------------NAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEECBT---------------------------------------------TBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred eeecCC---------------------------------------------CCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 443210 0112345679999999999997 999999
Q ss_pred Eecc
Q psy6984 309 WNTL 312 (380)
Q Consensus 309 w~~~ 312 (380)
|++.
T Consensus 378 w~~~ 381 (383)
T 3ei3_B 378 WNRE 381 (383)
T ss_dssp EECC
T ss_pred EecC
Confidence 9863
No 100
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.2e-34 Score=251.00 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=202.1
Q ss_pred cccceEEEEeCCCC---CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEE
Q psy6984 15 HNGWVTQIATNPKF---PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRL 90 (380)
Q Consensus 15 h~~~v~~i~~~~~~---~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~v 90 (380)
|.+.|++++|+|+. +.+|++|+.||.|++|++.... ....+.+|...|.+++|+| ++++|++++.||.|++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 67889999999873 2489999999999999986432 2345678999999999999 9999999999999999
Q ss_pred EECCCCceeeee---cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--------------------------
Q psy6984 91 WDLAAGKTTRRF---EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF-------------------------- 141 (380)
Q Consensus 91 wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~-------------------------- 141 (380)
||+.+++....+ ..|...|.+++|+|++..+++++.|+.|++||+......
T Consensus 143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred EEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 999999988887 689999999999999999999999999999997653221
Q ss_pred -EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--------------eEeeeCCccceEEEEEcCC--
Q psy6984 142 -TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--------------KINHSGHTGYLNTVTVSPD-- 204 (380)
Q Consensus 142 -~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~i~~~~~~~~-- 204 (380)
......|...|.+++|+. .++++++.|+.|++||+.+... ...+..|...|++++|+|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWLG----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp SEEECSSCSSCCCEEEEET----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred ccccccCCcceEEEEEEcC----CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 112234888899999982 3799999999999999876532 5566788889999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc--c
Q psy6984 205 GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL--F 282 (380)
Q Consensus 205 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 282 (380)
+++|++++.|+.|++||+.+++.... ....+..+ .
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 335 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKA-------------------------------------------KCTTLTHHKCG 335 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGC-------------------------------------------EEEEECCTTCC
T ss_pred CcEEEEEecCCcEEEEECCCCCCccc-------------------------------------------cceEEcccccC
Confidence 99999999999999999977642100 00011122 4
Q ss_pred cceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
..|.+++|+|++++|++++.||.|++||+
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 67889999999999999999999999985
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=252.56 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=205.0
Q ss_pred CcccceEEEEeCCCC--CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEE------EccCCCEEEEEeCC
Q psy6984 14 GHNGWVTQIATNPKF--PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV------LSSDGNYALSGSWD 85 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~~~d 85 (380)
+|.+.|++++|+|+. +.+|++++.||.|++|++.... .....+.+|...|.++. |+|++++|++++.|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----ccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 799999999999974 5899999999999999987543 12345678999999995 46899999999999
Q ss_pred CcEEEEECCCCc-eeeeecccCC----CeEEEE----EeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984 86 KTLRLWDLAAGK-TTRRFEDHTK----DVLSVA----FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156 (380)
Q Consensus 86 ~~i~vwd~~~~~-~~~~~~~h~~----~v~~~~----~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 156 (380)
+.|++||+.+++ ....+..|.+ .+.+++ |+|++..+++++.|+.|++||+........ ..|...+.+++
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~ 216 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLE 216 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEE
Confidence 999999999886 6777765554 788888 678999999999999999999887655333 35778899999
Q ss_pred EccCC-CCCEEEEEeCCCeEEEEeCCCceeeEee-----eCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEE
Q psy6984 157 FSPNH-QNPIIVSAGWDRMVKVWNLTNCKLKINH-----SGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLH 229 (380)
Q Consensus 157 ~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 229 (380)
|+|.. ....|++++.|+.|++||+++.+....+ .+|...|.+++|+|+++ ++++++.|+.|++||+..+....
T Consensus 217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 99931 2347899999999999999876544333 38999999999999998 89999999999999987654322
Q ss_pred EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE-EeeCCCcEEE
Q psy6984 230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV-SSSRDKTIKL 308 (380)
Q Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~i 308 (380)
... +++..... .+ ..+....+..|...|.+++|+|++++|+ +++.||.|++
T Consensus 297 ~~~-----------~~g~~~~~---------~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 297 KKD-----------SEGIEMGV---------AG--------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp -CC-----------TTSCCCCC---------CC--------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred ccc-----------CCCCcccc---------cc--------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 111 11110000 00 0112234456677899999999999998 8999999999
Q ss_pred Eecc
Q psy6984 309 WNTL 312 (380)
Q Consensus 309 w~~~ 312 (380)
|++.
T Consensus 349 w~~~ 352 (357)
T 3i2n_A 349 LIVT 352 (357)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9864
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-33 Score=239.26 Aligned_cols=250 Identities=19% Similarity=0.357 Sum_probs=209.1
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
++.++...+.+|.+.|+++.|+|+ +.+|++++.||.+++|++...... .....+.+|...|.++.| ++++|++++
T Consensus 47 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 121 (313)
T 3odt_A 47 DDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGE--DPLYTLIGHQGNVCSLSF--QDGVVISGS 121 (313)
T ss_dssp SSSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTS--CC-CEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCC--CcccchhhcccCEEEEEe--cCCEEEEEe
Confidence 344567788899999999999997 689999999999999998654321 234456889999999999 678999999
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
.|+.|++|| .++....+..|...+.+++|+| ++..+++++.|+.+++||. ..........|...+.+++|+|++.
T Consensus 122 ~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~ 197 (313)
T 3odt_A 122 WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH 197 (313)
T ss_dssp TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE
T ss_pred CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe
Confidence 999999999 6778888889999999999988 9999999999999999993 2333344444888999999999754
Q ss_pred CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 242 (380)
+++++.|+.|++||+++.+....+.+|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.
T Consensus 198 ---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---------- 263 (313)
T 3odt_A 198 ---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---------- 263 (313)
T ss_dssp ---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE----------
T ss_pred ---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe----------
Confidence 8899999999999999998888888999999999999999 58899999999999998876543332
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 314 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 314 (380)
.+...+.+++|+|+++ +++++.||.|++|++..+
T Consensus 264 -------------------------------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 264 -------------------------------------LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp -------------------------------------CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred -------------------------------------ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 1223577889999998 667899999999987554
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=278.95 Aligned_cols=259 Identities=20% Similarity=0.309 Sum_probs=208.4
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEEeCCC
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSGSWDK 86 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~ 86 (380)
...+.||.+.|++++|+|+ +++|++|+.||+|++|++.... ......+.+|...|++++|+|+ +++|++|+.||
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCC---CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 4568899999999999998 6899999999999999986321 1223457899999999999988 99999999999
Q ss_pred cEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEccCC
Q psy6984 87 TLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 87 ~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
.|++||+.+++ ....+..|...|.+++|+|+ +..+++++.|+.|++||+.... .......+|...|.+++|+|..
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 99999999886 67777889999999999999 9999999999999999986652 2223335788899999999941
Q ss_pred -----------CCCEEEEEeCCCeEEEEeCCCc----eeeEeeeCCccceEEEEEcCC---CCEEEEEcCCCcEEEEECC
Q psy6984 162 -----------QNPIIVSAGWDRMVKVWNLTNC----KLKINHSGHTGYLNTVTVSPD---GSLCASGGKDMNAMLWDLN 223 (380)
Q Consensus 162 -----------~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~ 223 (380)
....+++++.||.|++||+++. .....+.+|...|.+++|+|+ ++++++++.|+.|++||+.
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 1346999999999999999875 444566789999999999999 8999999999999999987
Q ss_pred CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 224 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
+++.... ........+...+++++|+|++++|++|+.|
T Consensus 238 ~~~~~~~------------------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 238 NEQGPWK------------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp SSSSCCB------------------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred CCCCcce------------------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 6531000 0000112344568899999999999999999
Q ss_pred CcEEEEeccc
Q psy6984 304 KTIKLWNTLA 313 (380)
Q Consensus 304 g~v~iw~~~~ 313 (380)
|.|++|++..
T Consensus 276 g~I~vwd~~~ 285 (753)
T 3jro_A 276 NKVTLWKENL 285 (753)
T ss_dssp SCEECCBCCS
T ss_pred CEEEEEecCC
Confidence 9999999864
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-33 Score=255.30 Aligned_cols=262 Identities=21% Similarity=0.339 Sum_probs=203.5
Q ss_pred ccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEECCC----------CceeeeecccCCCeEEEEEeCCCC-EEEEEe
Q psy6984 58 KRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWDLAA----------GKTTRRFEDHTKDVLSVAFSVDNR-QIVSSS 125 (380)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~ 125 (380)
.....|...|++++|+|+ +++|++++.||.|++||+.+ .+....+..|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 78999999999999999976 567778889999999999999998 999999
Q ss_pred CCCcEEEEeCCCcce----E--EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccce
Q psy6984 126 RDKTIKLWNTLAHCK----F--TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYL 196 (380)
Q Consensus 126 ~d~~v~iwd~~~~~~----~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i 196 (380)
.||.|++||+..... . .....+|...|.+++|+|... .+|++++.|+.|++||+++. +.......|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999865211 1 123347888999999999543 48899999999999999876 4555667899999
Q ss_pred EEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984 197 NTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM 274 (380)
Q Consensus 197 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (380)
++++|+|+++ ++++|+.|+.|++||++... .+.
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~--------------------------------------------- 315 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH--------------------------------------------- 315 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---------------------------------------------
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---------------------------------------------
Confidence 9999999987 68899999999999997632 111
Q ss_pred eeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEecccceeeeEe-ecccceEEEeeCcccccccCCCCCCceEEEEE
Q psy6984 275 ETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-DLETKKMVEELRPDVVSQSTKADPPMCLSLAW 352 (380)
Q Consensus 275 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (380)
.+..|...|.+++|+|+++ +|++++.||.|++|++......... +... .+.........|...+.+++|
T Consensus 316 --~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~ 386 (430)
T 2xyi_A 316 --SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED-------GPPELLFIHGGHTAKISDFSW 386 (430)
T ss_dssp --EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH-------CCTTEEEECCCCSSCEEEEEE
T ss_pred --EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc-------CCcceEEEcCCCCCCceEEEE
Confidence 1123445688999999985 6899999999999997542110000 0000 000011122345667899999
Q ss_pred ecCCC-EEEEEeeCCeEEEEEee
Q psy6984 353 STDGQ-TLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 353 s~dg~-~l~~g~~dg~v~iw~~~ 374 (380)
+|+++ +|++++.||.|+||++.
T Consensus 387 ~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 387 NPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEECCCCEEEeEcc
Confidence 99999 88999999999999985
No 105
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-32 Score=239.57 Aligned_cols=259 Identities=27% Similarity=0.410 Sum_probs=206.8
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 86 (380)
.....+.+|.+.|+++.|+|+ +++|++++.|+.|++|+..... .......+...+....+++++++|++++.|+
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 150 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGT-----TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccc-----eeeeecCCCCceeEEEEeecCccceeecCCC
Confidence 456788999999999999998 6899999999999999976432 1223456677788999999999999999999
Q ss_pred cEEEEECCCCce-eeeecccCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984 87 TLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDN--RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163 (380)
Q Consensus 87 ~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~--~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (380)
.+++||+..... ......|...+.+++|++++ ..+++++.|+.|++||......... ..+|...|.+++|+|+++
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~h~~~v~~~~~s~~~~- 228 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HIGHTGYLNTVTVSPDGS- 228 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSS-
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-ecCCCCcEEEEEECCCCC-
Confidence 999999876544 34456789999999998765 5788999999999999877655443 457999999999999764
Q ss_pred CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS 243 (380)
Q Consensus 164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~ 243 (380)
+|++++.|+.|++||+++.+....+.. ...+.++.++|++.++ +++.|+.|++||++.+..+..+....
T Consensus 229 -~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 297 (340)
T 4aow_A 229 -LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV-------- 297 (340)
T ss_dssp -EEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------
T ss_pred -EEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccc--------
Confidence 799999999999999999887766664 4579999999987655 56679999999998876554432110
Q ss_pred cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984 244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 314 (380)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 314 (380)
.......+...|.+++|+|++++|++|+.||+|++|++.++
T Consensus 298 ------------------------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 298 ------------------------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ------------------------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 01112245567899999999999999999999999987554
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-33 Score=254.95 Aligned_cols=269 Identities=23% Similarity=0.350 Sum_probs=209.1
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-----cccccccccCCCcceEEEEEccCCC-EEEEEe
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-----YGVPQKRLKGHSHFISDIVLSSDGN-YALSGS 83 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 83 (380)
..+.+|.+.|++++++|..+.+|++++.||.|++|++...... ...+...+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 4556899999999999975679999999999999998752111 0123445678999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------eeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcc--eEEEeeCCCcCcEE
Q psy6984 84 WDKTLRLWDLAAGKT-------TRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHC--KFTIVEDGHSDWVS 153 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~ 153 (380)
.||.|++||+.++.. ...+..|...|.+++|+| ++..+++++.|+.|++||+.... ........|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 455678999999999999 67899999999999999987642 22222247888999
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
+++|+|++. .+|++|+.|+.|++||+++ ......+..|...|.+++|+|+++ +|++++.|+.|++||+........
T Consensus 282 ~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 359 (430)
T 2xyi_A 282 CLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS- 359 (430)
T ss_dssp EEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC-
T ss_pred EEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC-
Confidence 999999764 3788999999999999987 445666778999999999999985 699999999999999875321100
Q ss_pred EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEe
Q psy6984 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWN 310 (380)
Q Consensus 232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~ 310 (380)
+... .+. .......+.+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus 360 ------------~~~~------------~~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 ------------TEDA------------EDG--------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp ------------HHHH------------HHC--------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ------------cccc------------ccC--------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 0000 000 0011122234556799999999999 899999999999998
Q ss_pred cc
Q psy6984 311 TL 312 (380)
Q Consensus 311 ~~ 312 (380)
+.
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.1e-32 Score=248.26 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=223.4
Q ss_pred cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee-----eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984 65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR-----RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 139 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~ 139 (380)
..+.+++|+|++.++++++.|+.|++||+.+++... .+..|...|.+++|+|++..+++++.|+.|++||..+..
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 345689999987888888889999999999988876 445788899999999999999999999999999987765
Q ss_pred eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc-------
Q psy6984 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG------- 212 (380)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------- 212 (380)
...... .|...+.+++|+|++.. ++++++.|+.|++||+++.+.......+ ..+.+++++|+++++++++
T Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 203 YKATVD-LTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp EEEEEE-CSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred EEEEEc-CCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence 554443 67788999999997652 4456668999999999988776655543 4589999999999999887
Q ss_pred -CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEe
Q psy6984 213 -KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS 291 (380)
Q Consensus 213 -~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 291 (380)
.|+.|++||+.+++.+..+.+...+..++|+|++....+ ....++.+.+|+...++....+ .+...+.+++|+
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-----~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s 353 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYV-----SDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALS 353 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEE-----EETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEEC
T ss_pred cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEE-----EecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEc
Confidence 588999999999988888877778999999998764322 1235678999999888766544 456778999999
Q ss_pred ecCCEEEEeeC---------------CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC
Q psy6984 292 VDNRQIVSSSR---------------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG 356 (380)
Q Consensus 292 ~~~~~l~s~~~---------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 356 (380)
|++++|++++. ||.|++||..++..+..+.. ...+..++|+|||
T Consensus 354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg 412 (433)
T 3bws_A 354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------------------GNQPTGLDVSPDN 412 (433)
T ss_dssp TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------------------SSSEEEEEECTTS
T ss_pred CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------------------CCCCceEEEcCCC
Confidence 99999888876 57999998755433222110 1236789999999
Q ss_pred CEEEEEee-CCeEEEEEee
Q psy6984 357 QTLFAGYS-DNTIRVWQVS 374 (380)
Q Consensus 357 ~~l~~g~~-dg~v~iw~~~ 374 (380)
++|++++. |+.|++|++.
T Consensus 413 ~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEETTTTEEEEEEET
T ss_pred CEEEEEECCCCeEEEEEec
Confidence 99988775 9999999985
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=275.30 Aligned_cols=259 Identities=22% Similarity=0.304 Sum_probs=206.4
Q ss_pred cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEe
Q psy6984 59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWN 134 (380)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd 134 (380)
.+.+|...|++++|+|++++|++|+.||.|++||+. +++....+.+|..+|.+++|+|+ ++++++++.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 467999999999999999999999999999999997 45667788899999999999988 99999999999999999
Q ss_pred CCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcC--------
Q psy6984 135 TLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSP-------- 203 (380)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~-------- 203 (380)
+.+... ......+|...|.+++|+|+.....+++++.|+.|++||++.. .......+|...|.++.|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 876542 3344467899999999999732458999999999999999876 33445678899999999999
Q ss_pred -----CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984 204 -----DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF 278 (380)
Q Consensus 204 -----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (380)
++.++++|+.||.|++||++++..... ....+
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~-------------------------------------------~~~~~ 200 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-------------------------------------------LESTL 200 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEE-------------------------------------------EEEEE
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccce-------------------------------------------eeeee
Confidence 589999999999999999876531110 01122
Q ss_pred eccccceeEEEEeec---CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC
Q psy6984 279 FSLFRDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD 355 (380)
Q Consensus 279 ~~~~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 355 (380)
..|...|.+++|+|+ +++|++|+.||.|++||...+.... .. .......+...+.+++|+|+
T Consensus 201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------~~------~~~~~~~~~~~v~~l~~spd 265 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KK------TLLKEEKFPDVLWRASWSLS 265 (753)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC---------BC------CBSSSSCCSSCCCCEEECTT
T ss_pred cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc---------ee------EEeccCCCCCceEEEEEcCC
Confidence 345567899999999 8999999999999999875432100 00 01112345667889999999
Q ss_pred CCEEEEEeeCCeEEEEEeee
Q psy6984 356 GQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 356 g~~l~~g~~dg~v~iw~~~~ 375 (380)
|++|++|+.||.|++|++..
T Consensus 266 g~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 266 GNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TCCEEEECSSSCEECCBCCS
T ss_pred CCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999874
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=256.04 Aligned_cols=269 Identities=16% Similarity=0.264 Sum_probs=195.0
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----------eeeeecccC------------CCeEEEEEeCCC
Q psy6984 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-----------TTRRFEDHT------------KDVLSVAFSVDN 118 (380)
Q Consensus 62 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~~~~ 118 (380)
.|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467889999999999999999999999999998876 477788898 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCcceE---------------------------------------EEeeCCCcCcEEEEEE
Q psy6984 119 --RQIVSSSRDKTIKLWNTLAHCKF---------------------------------------TIVEDGHSDWVSCVRF 157 (380)
Q Consensus 119 --~~~~s~~~d~~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~ 157 (380)
..+++++.|+.|++||+...... .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999997542221 1223579999999999
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeCCCceeeE--------eeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE-
Q psy6984 158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--------NHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKH- 227 (380)
Q Consensus 158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~- 227 (380)
+|++. +|+++ .|+.|++||++...... ...+|...|.+++|+|++ ++|++|+.|+.|++||+++++.
T Consensus 186 ~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred cCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99754 78887 79999999998433222 245788999999999998 9999999999999999987753
Q ss_pred ---EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984 228 ---LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK 304 (380)
Q Consensus 228 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 304 (380)
+..+..... ......+..+...|.+++|+|++++|++++. +
T Consensus 263 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 263 DRHSKLFEEPED-----------------------------------PSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L 306 (447)
T ss_dssp CTTCEEECCC----------------------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred cceeeEeccCCC-----------------------------------ccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence 222111000 0000112234457899999999999999998 9
Q ss_pred cEEEEeccc-ceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 305 TIKLWNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 305 ~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
.|++||+.. +..+..+..... ................+..++|+|+|++|++|+.||.|++||+.
T Consensus 307 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQVHEY-----LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp EEEEEETTCCSSCSCCEESCGG-----GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred eEEEEeCCCCccccceeecccc-----ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 999999864 322221111100 00000000000000012358999999999999999999999975
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=253.49 Aligned_cols=316 Identities=14% Similarity=0.139 Sum_probs=223.4
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC---CCccc--------------------------------------
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD---TNYGV-------------------------------------- 55 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~---~~~~~-------------------------------------- 55 (380)
.+++++.++|+ +++|+++ .++.|++|++.... .....
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 47889999998 5666655 57899999976443 10000
Q ss_pred -----------ccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECC--CCceeeeec--ccCCCeEEEEEeCCCC
Q psy6984 56 -----------PQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLA--AGKTTRRFE--DHTKDVLSVAFSVDNR 119 (380)
Q Consensus 56 -----------~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 119 (380)
+.....+|...|++++|+|++++| ++++.|+.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 001123566689999999999996 899999999999998 888887776 5678899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceEE---EeeCCCcCcEEEEEEccC-CCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCcc
Q psy6984 120 QIVSSSRDKTIKLWNTLAHCKFT---IVEDGHSDWVSCVRFSPN-HQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTG 194 (380)
Q Consensus 120 ~~~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~ 194 (380)
+|++++.++.+++|++....... ....+|...|.+++|+|+ ....+|++++.|+.|++||+++.+.... ..+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999976543221 122367889999999997 1234799999999999999998776655 558999
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984 195 YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM 274 (380)
Q Consensus 195 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (380)
.|.+++|+ ++++|++++.|+.|++||+.+++.+..+.....+..+++....... .+..
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~----- 300 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP----------------RFQN----- 300 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------------------------
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc----------------cccc-----
Confidence 99999999 9999999999999999999999887776533222221111100000 0000
Q ss_pred eeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEec--ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984 275 ETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNT--LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351 (380)
Q Consensus 275 ~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (380)
.........+.+++|+|++++|++++ .|+.|++|++ ..+..+. .+..+. .+ ..+.+++
T Consensus 301 -~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~--------~~~~~~---------~~-~~v~~~~ 361 (450)
T 2vdu_B 301 -ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLA--------LKQIIT---------FP-YNVISLS 361 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEE--------EEEEEE---------CS-SCEEEEE
T ss_pred -cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCcee--------eccEec---------cC-CceEEEE
Confidence 00001234578899999999999998 8999999987 3321111 111111 11 4578999
Q ss_pred EecCCCEEEEEee------CCeEEEEEeee
Q psy6984 352 WSTDGQTLFAGYS------DNTIRVWQVSV 375 (380)
Q Consensus 352 ~s~dg~~l~~g~~------dg~v~iw~~~~ 375 (380)
|+|++.++++++. ++.|++|.+..
T Consensus 362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9996544444443 55689998753
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-33 Score=252.84 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=170.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCcee-----eeecccCCCeEEEEEeC--------CCCEEEEEeCCCcEEEEeC
Q psy6984 69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTT-----RRFEDHTKDVLSVAFSV--------DNRQIVSSSRDKTIKLWNT 135 (380)
Q Consensus 69 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~--------~~~~~~s~~~d~~v~iwd~ 135 (380)
...+++++.+|++++.|+.|+|||+.+++.. ..+.+|.+.|.+++|+| |+++||+++.|++|++||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 3444566778999999999999999887543 34678999999999998 8899999999999999998
Q ss_pred CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-------------------------eee
Q psy6984 136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-------------------------NHS 190 (380)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-------------------------~~~ 190 (380)
.......... .|...+.+++|+|++. .+|++++.|++|++||+++.+... ...
T Consensus 174 ~~~~~~~~~~-~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 174 TDEGPILAGY-PLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp ETTEEEEEEE-ECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCceeeeec-CCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 7655444333 5677899999999754 378999999999999998654221 123
Q ss_pred CCccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEE
Q psy6984 191 GHTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP 268 (380)
Q Consensus 191 ~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (380)
+|...+.++.|+ |+++.+++++.|+.+++||+..++....+. +...+..+.+.|+....
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------- 312 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI------------------- 312 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE-------------------
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc-------------------
Confidence 567778888886 799999999999999999998876554442 33334444444432110
Q ss_pred cCCceeeeeeeccccceeEEEEee--cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCc
Q psy6984 269 INHGKMETPFFSLFRDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346 (380)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (380)
..........|+| ++.++++|+.||+|++||...+...... ..+...
T Consensus 313 -----------~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------------------~~~~~~ 361 (393)
T 4gq1_A 313 -----------SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP--------------------IQLGMP 361 (393)
T ss_dssp -----------CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE--------------------EECSSC
T ss_pred -----------cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe--------------------cCCCCc
Confidence 0001112233443 4456778889999999997554322111 113446
Q ss_pred eEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 347 CLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 347 ~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
|.+++|||||++||+++.+| +.+|++
T Consensus 362 V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 88999999999999998666 666655
No 112
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.9e-34 Score=257.07 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=188.6
Q ss_pred EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT 87 (380)
Q Consensus 8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 87 (380)
....+.||.+.|++|.|+|..+++|++|+.||+|++||+...... .......+...+.++.|+|++++|++|+.||.
T Consensus 156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---VFASSDTINIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE---EEECCSSCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee---EEeccCCCCccEEEEEECCCCCEEEEEeCCCc
Confidence 445677999999999999976789999999999999998643211 11112234456788999999999999999999
Q ss_pred EEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCCCCC
Q psy6984 88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
|++||+. ++.+..+..|...|.+++|+|++. ++++++.|+.|++||+...... .....+|...|.+++|+|++.
T Consensus 233 i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-- 309 (435)
T 4e54_B 233 VILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-- 309 (435)
T ss_dssp EEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS--
T ss_pred EeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC--
Confidence 9999986 456677889999999999999886 7889999999999998653321 122346888999999999764
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEeeeCCcc------ceEEEEEcCCCCEEEEEcC------------CCcEEEEECCCCc
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTG------YLNTVTVSPDGSLCASGGK------------DMNAMLWDLNDGK 226 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~ 226 (380)
+|++++.|+.|++||+.+.........|.. .+....++|++.++++++. ++.|++||..+++
T Consensus 310 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 799999999999999998776555544432 2334567777777666542 2456666665554
Q ss_pred EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE-EEeecCCEEEEeeCCCc
Q psy6984 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV-AFSVDNRQIVSSSRDKT 305 (380)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~ 305 (380)
.+..+. ..+...|.++ +|+|+|++|++|+ |++
T Consensus 390 ~~~~l~----------------------------------------------~~~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 390 MMCQLY----------------------------------------------DPESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp EEEEEC----------------------------------------------CSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred EEEEEe----------------------------------------------CCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 432221 1233445565 6999999999876 889
Q ss_pred EEEEecccc
Q psy6984 306 IKLWNTLAH 314 (380)
Q Consensus 306 v~iw~~~~~ 314 (380)
|++|+..++
T Consensus 423 i~iW~~~~g 431 (435)
T 4e54_B 423 ILIWSQQEA 431 (435)
T ss_dssp EEECCCC--
T ss_pred EEEEECCcC
Confidence 999987543
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=244.73 Aligned_cols=263 Identities=11% Similarity=0.047 Sum_probs=196.0
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC---------CCcee
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA---------AGKTT 99 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~ 99 (380)
+.++++|+.||+|++||+....... .+. ...|.++.++|+ +++++.|+.|++|+.. +++.+
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~-----~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTIT-----TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEE-----EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEE-----EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 5689999999999999987543221 111 345777788887 9999999999999765 44434
Q ss_pred eeec-ccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984 100 RRFE-DHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK 176 (380)
Q Consensus 100 ~~~~-~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 176 (380)
..+. .|..+|.+++|+| +++++++++.|+.|++||+............+...+.+++|+|++. +|++|+.|+.|+
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~--~lasg~~dg~i~ 195 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL--LLALYSPDGILD 195 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC--EEEEECTTSCEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC--EEEEEcCCCEEE
Confidence 4443 6778899999999 9999999999999999999877665555455666799999999764 799999999999
Q ss_pred EEeCCCceee-EeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee
Q psy6984 177 VWNLTNCKLK-INHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD 254 (380)
Q Consensus 177 iwd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 254 (380)
+||+++.+.. ..+.. |...|.+++|+|++.+|++++.+ .|++||+++++.+..+.. +
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~--------------~------ 254 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPT--------------Y------ 254 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCC--------------C------
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecc--------------c------
Confidence 9999988766 56666 99999999999999999999954 999999987643211100 0
Q ss_pred eeeeccccceEEEEcCCceeeeeeeccccce--eEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEee
Q psy6984 255 ISRTLQKSNLILYPINHGKMETPFFSLFRDV--LSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEEL 331 (380)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 331 (380)
..+...+ .+++|+|++++|++++. |+.|++|+.....+... .
T Consensus 255 ------------------------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~-----------~ 299 (343)
T 3lrv_A 255 ------------------------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT-----------K 299 (343)
T ss_dssp ------------------------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE-----------E
T ss_pred ------------------------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE-----------e
Confidence 0000011 46899999999999998 99999998643221110 0
Q ss_pred CcccccccCCCCCCceEEEEEec---CCCEEEEEeeCCeEEEEE
Q psy6984 332 RPDVVSQSTKADPPMCLSLAWST---DGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~g~~dg~v~iw~ 372 (380)
..+..++|++ +++.|++++.||.+.++-
T Consensus 300 -------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 300 -------------DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp -------------EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred -------------cCceeEecCccccccceeEEEecCCceEEEE
Confidence 1234566777 788888888888888763
No 114
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-32 Score=240.59 Aligned_cols=257 Identities=15% Similarity=0.101 Sum_probs=197.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeC
Q psy6984 60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNT 135 (380)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~ 135 (380)
..+|...|++++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++ ++++++.|+.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 35799999999999999999999999999999998876 3445568999999999999999 9999999999999998
Q ss_pred -CCcceEEEeeCC--CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC---------ceeeEeeeCCccceEEEEEcC
Q psy6984 136 -LAHCKFTIVEDG--HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN---------CKLKINHSGHTGYLNTVTVSP 203 (380)
Q Consensus 136 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~ 203 (380)
...... ...+ |...|.+++|+| + ..|++++.|+.|++||+++ .+....+. |...+.+++|+|
T Consensus 87 ~~~~~~~--~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 87 IGSPSFQ--ALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSEE--ECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred ccCCceE--eccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 666542 2345 889999999998 3 4799999999999999986 55444444 788999999999
Q ss_pred CCCEEEEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984 204 DGSLCASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF 282 (380)
Q Consensus 204 ~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (380)
++ +++++.|+.|++||++. +..... .....+.
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------~~~~~~~ 193 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGT---------------------------------------------IEESGLK 193 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCE---------------------------------------------EEECSCS
T ss_pred Cc--EEEEeCCCeEEEEECCccccccce---------------------------------------------eeecCCC
Confidence 87 89999999999999976 431100 0001223
Q ss_pred cceeEEEEee-cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984 283 RDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA 361 (380)
Q Consensus 283 ~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (380)
..+.+++|+| ++++|++++.||.|++|+...... .........+...........+...+.+++|+|++++|++
T Consensus 194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 4578899999 999999999999999998754300 0000001111100000011233457889999999999999
Q ss_pred EeeCCeEEEEEee
Q psy6984 362 GYSDNTIRVWQVS 374 (380)
Q Consensus 362 g~~dg~v~iw~~~ 374 (380)
|+.||.|++||+.
T Consensus 269 ~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 269 AGSDGIISCWNLQ 281 (342)
T ss_dssp EETTSCEEEEETT
T ss_pred ecCCceEEEEcCc
Confidence 9999999999985
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-31 Score=240.58 Aligned_cols=256 Identities=19% Similarity=0.302 Sum_probs=206.1
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEEccCC-CEEEEEeCC
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVLSSDG-NYALSGSWD 85 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 85 (380)
...+.+|.+.|++++|+|..+++|++|+.||+|++|++....... ..+...+.+|...|.+++|+|++ ++|++++.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 345789999999999999447899999999999999987643211 12345678999999999999998 699999999
Q ss_pred CcEEEEECCCCceeeee--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc-EEEEEEccCCC
Q psy6984 86 KTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-VSCVRFSPNHQ 162 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 162 (380)
+.|++||+.+++....+ ..|...|.+++|+|++..+++++.|+.|++||+............|... +.++.|+|++.
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 99999999999999998 7899999999999999999999999999999988776665554566654 88999999753
Q ss_pred CCEEEEE---eCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcE-E---EEEE
Q psy6984 163 NPIIVSA---GWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDGKH-L---HTLV 232 (380)
Q Consensus 163 ~~~l~s~---~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~---~~~~ 232 (380)
+|++| +.|+.|++||+++.+. ......|...+.+++|+|++++++ +|+.|+.|++||+.+++. + ....
T Consensus 234 --~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 234 --ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp --EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred --EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 67777 6899999999987653 222235677899999999999986 566899999999998873 3 3333
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM 274 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (380)
+...+.+++|+|++.+... ....+.+|++..+..
T Consensus 312 ~~~~v~~~~~sp~~~~~~s--------~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 312 SKESQRGMGYMPKRGLEVN--------KCEIARFYKLHERKC 345 (402)
T ss_dssp CSSCCSEEEECCGGGSCGG--------GTEEEEEEEEETTEE
T ss_pred cCCcccceEEeccccccee--------cceeEEEEEcCCCcE
Confidence 5688999999998765332 233567777765543
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-30 Score=236.20 Aligned_cols=298 Identities=11% Similarity=0.090 Sum_probs=233.5
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
++....+..+. .+.+++++| .+.++++++.|++|++||+.........+...+.+|...|.+++|+++++++++++.|
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred ceEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 35555665554 455899999 4678888889999999998754332222222456899999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
+.|++||+.+++....+..|...+.+++|+|+++.+++ ++.|+.|++||+.+........ ....+.+++++|+++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~-- 266 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGK-- 266 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSS--
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCC--
Confidence 99999999999999988889999999999999998854 5589999999987765544432 234589999999765
Q ss_pred EEEEEe--------CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984 165 IIVSAG--------WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHND 235 (380)
Q Consensus 165 ~l~s~~--------~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 235 (380)
.+++++ .|+.|++||+.+.+..... .|...+..++|+|+++. +++++.|+.+++||+.+++.+..+.+..
T Consensus 267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 345 (433)
T 3bws_A 267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD 345 (433)
T ss_dssp EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC
Confidence 566665 4889999999987765443 45567889999999975 5667999999999999999888888888
Q ss_pred ceEEEEeecCcccceeeeeee---------eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC-CCc
Q psy6984 236 IITALCFSPNRSFQKIKLDIS---------RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-DKT 305 (380)
Q Consensus 236 ~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~ 305 (380)
.+..++|+|++.+........ ....++.+.+|+..+++....+.. ...+.+++|+|++++|++++. |+.
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence 899999999987543332110 011145799999988877665544 557899999999999988775 999
Q ss_pred EEEEec
Q psy6984 306 IKLWNT 311 (380)
Q Consensus 306 v~iw~~ 311 (380)
|++|++
T Consensus 425 i~v~~~ 430 (433)
T 3bws_A 425 IRVYRR 430 (433)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999985
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.3e-29 Score=226.77 Aligned_cols=277 Identities=14% Similarity=0.149 Sum_probs=217.7
Q ss_pred CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984 30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAGKTTRRFEDHTKD 108 (380)
Q Consensus 30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 108 (380)
.++++++.|+.|++||+.... ....+..| ..+.+++|+|++++| ++++.|+.|++||+.+++....+..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-----VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-----EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCCCe-----EEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C
Confidence 468889999999999986432 12234444 358999999999987 677799999999999999888877655 8
Q ss_pred eEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE
Q psy6984 109 VLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI 187 (380)
Q Consensus 109 v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 187 (380)
+.+++|+|++++++. ++.++.|++||+.+........ +...+.+++|+|+++. ++++++.++.|++||+.+.+...
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCE-EEEEeCCCCEEEEEECCCCcEEE
Confidence 999999999998764 5567999999988766554443 2345899999998652 44788889999999999888776
Q ss_pred eeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEE
Q psy6984 188 NHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL 266 (380)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (380)
....+ ..+..++|+|+++++ ++++.++.|++||+.+++.+..+.+...+..++|+|++.+...... ...++.+.+
T Consensus 153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~v~~ 228 (391)
T 1l0q_A 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSM 228 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEE
T ss_pred EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec---CcCCCcEEE
Confidence 66655 456899999999987 6778899999999999998888888888999999999865433221 114578899
Q ss_pred EEcCCceeeeeeeccccceeEEEEeecCCEE-EEeeCCCcEEEEecccceeeeEee
Q psy6984 267 YPINHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVD 321 (380)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~ 321 (380)
|+...++....+.. ...+.+++|+|++++| ++++.|+.|++||+..+.....+.
T Consensus 229 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 229 IDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 99988877655544 3457899999999987 677889999999987766554443
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=9.4e-33 Score=247.11 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=165.3
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--------CCCEEEEEeCCCcEEEEECCCCceee
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--------DGNYALSGSWDKTLRLWDLAAGKTTR 100 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~vwd~~~~~~~~ 100 (380)
..+|++++.|++|++|++.............+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++....
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 5689999999999999987543222223456789999999999997 88999999999999999999888888
Q ss_pred eecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEE------------------------eeCCCcCcEEEE
Q psy6984 101 RFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTI------------------------VEDGHSDWVSCV 155 (380)
Q Consensus 101 ~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~------------------------~~~~~~~~v~~~ 155 (380)
.+..|..+|.+++|+|++. ++++++.|++|++||+........ ...+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 799999999999999765432111 113567778888
Q ss_pred EEc-cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEE------------------cC--CCCEEEEEcCC
Q psy6984 156 RFS-PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV------------------SP--DGSLCASGGKD 214 (380)
Q Consensus 156 ~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~------------------~~--~~~~l~~~~~d 214 (380)
.|. |++ ..+++++.|+++++||+...+....+..|...+..+.+ +| ++.++++|+.|
T Consensus 261 ~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 261 RWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 887 443 47899999999999999876544444444333333322 22 33466778888
Q ss_pred CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984 215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 294 (380)
+.|++||+.+++.... +..+...|.+++|+|||
T Consensus 339 g~V~lwd~~~~~~~~~-----------------------------------------------~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSI-----------------------------------------------PIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp TEEEEEETTCTTCCEE-----------------------------------------------EEECSSCEEEEEECTTS
T ss_pred CEEEEEECCCCcEEEE-----------------------------------------------ecCCCCcEEEEEEcCCC
Confidence 9999998876643211 22344578899999999
Q ss_pred CEEEEeeCCCcEEEEec
Q psy6984 295 RQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 295 ~~l~s~~~dg~v~iw~~ 311 (380)
++||+++.|| +.+|++
T Consensus 372 ~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 372 SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SEEEEEESSE-EEEEEE
T ss_pred CEEEEEeCCC-eEEEEE
Confidence 9999998766 556653
No 119
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-31 Score=240.46 Aligned_cols=252 Identities=27% Similarity=0.460 Sum_probs=203.4
Q ss_pred ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984 3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG 82 (380)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 82 (380)
.++.++...+.+|.+.|+++.++ +++|++|+.||+|++||+.... ....+.+|...|.++.|+ ++++++|
T Consensus 160 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~--~~~l~s~ 229 (435)
T 1p22_A 160 KNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGE-----MLNTLIHHCEAVLHLRFN--NGMMVTC 229 (435)
T ss_dssp SSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCC-----EEEEECCCCSCEEEEECC--TTEEEEE
T ss_pred CCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCc-----EEEEEcCCCCcEEEEEEc--CCEEEEe
Confidence 34566788899999999999993 5699999999999999987543 234567899999999996 4699999
Q ss_pred eCCCcEEEEECCCCcee---eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984 83 SWDKTLRLWDLAAGKTT---RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 83 ~~d~~i~vwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (380)
+.|+.|++||+.+++.. ..+.+|...|.+++| +++.+++++.|+.|++||+.+....... .+|...+.++.+++
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~ 306 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRD 306 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEET
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE-cCCCCcEEEEEeCC
Confidence 99999999999887655 667889999999999 6889999999999999998876655444 47888999999853
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239 (380)
Q Consensus 160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 239 (380)
.++++|+.|+.|++||+++++....+.+|...|.++++ +++++++|+.||.|++||+.+++.
T Consensus 307 ----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~------------ 368 (435)
T 1p22_A 307 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALD------------ 368 (435)
T ss_dssp ----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTS------------
T ss_pred ----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCC------------
Confidence 37999999999999999999888888999999999988 788999999999999999854320
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 313 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 313 (380)
+... .. ......+..|...|.+++| ++++|++|+.||+|++||+..
T Consensus 369 ----~~~~-------------~~---------~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 369 ----PRAP-------------AG---------TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp ----TTSC-------------TT---------TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred ----cccc-------------cc---------chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 0000 00 0011223345667888888 789999999999999998754
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=241.95 Aligned_cols=247 Identities=9% Similarity=0.098 Sum_probs=193.6
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc-----ceEEEEEccCCCEEEEEeCCCcE
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH-----FISDIVLSSDGNYALSGSWDKTL 88 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i 88 (380)
+|.+.|.+++|+|+ +.+||+++.||+|++|+... ....+. |.. .|.+++|+|||++|++|+.||.|
T Consensus 83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 66889999999998 78999999999999998532 122234 444 49999999999999999999999
Q ss_pred EEEECCCCce-------eeee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE---EEeeCCCcCcEEE
Q psy6984 89 RLWDLAAGKT-------TRRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF---TIVEDGHSDWVSC 154 (380)
Q Consensus 89 ~vwd~~~~~~-------~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~ 154 (380)
+|||+.+++. +..+ .+|...|.+++|+||| +++++.|+.+++||+...... ..+..+|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 9999998753 4555 6678899999999999 889999999999998765521 2333478888999
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV--SPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
++|+ + ..+++++ +++|++||+.+.+......+|...+..++| +|++..+++++.||. ++|...
T Consensus 232 vaFs-g---~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------- 296 (588)
T 2j04_A 232 LKIV-D---YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------- 296 (588)
T ss_dssp EEEE-T---TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------
T ss_pred EEEE-C---CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------
Confidence 9998 2 3688776 699999999988875555589999999999 999999999999999 999876
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 302 (380)
.+.++|++...+.. +..+.+|+...+.. . .+.....|++++|||||+.+|+++.
T Consensus 297 ------~~~~spd~~l~a~~--------d~~v~lW~~~g~~l-~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ------ELHVTADNIIAPYL--------EKKFKKWSTIWNEF-N-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ------SEEEECCCSSHHHH--------HHHHHHTTTTTTSS-S-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ------cEEECCCceEEEEc--------CCEEEEEECCCCce-e-eeccceEEEEEEECCCCCEEEEEEe
Confidence 14477776543321 34455555433321 1 2222445889999999999999874
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.5e-30 Score=219.18 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=174.8
Q ss_pred cceeeEEeEEecCccc----ceEEEEeCCCCC--CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC
Q psy6984 2 STETLQLRGTLNGHNG----WVTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD 75 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~----~v~~i~~~~~~~--~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 75 (380)
++.+++++.+|+.-.+ .+.++-|-.... ..+++++. .+|++|+..... + ........+|+.+|..+.+.||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~-~-~~~~~~~~~~~~~v~~~~~~~~ 97 (356)
T 2w18_A 21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW-Q-WEKLYTWHFAEVPVLQIVPVPD 97 (356)
T ss_dssp ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSS-B-EEEEEEEECCSSCEEEECCCTT
T ss_pred CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc-c-ceeeEEEeccCceeEEEEEcCc
Confidence 4567889999886654 355665655421 25777775 699999987541 1 1223445566666666666554
Q ss_pred CCEEE-EEeCCC---cEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEee
Q psy6984 76 GNYAL-SGSWDK---TLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 76 ~~~l~-s~~~d~---~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~ 145 (380)
..-|+ .+--+= .|+..-.... .......+|...|..+ ++++.+.+++ .|+.|++|++....+.....
T Consensus 98 ~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 98 VYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp CCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred ccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence 32221 111110 1111000000 0111112222223222 3343333322 36666666653322222222
Q ss_pred CCCcCcEEEEEEcc-CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc---cceEEEEEcCCCCEE------------E
Q psy6984 146 DGHSDWVSCVRFSP-NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT---GYLNTVTVSPDGSLC------------A 209 (380)
Q Consensus 146 ~~~~~~v~~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~ 209 (380)
.+|...+..++|++ ++.+.+|++++.|++||+||+++++....+.+|. ..+.+++|+|+|+++ +
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 35677788888988 5556799999999999999999998887777643 367788999999986 5
Q ss_pred EEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE
Q psy6984 210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA 289 (380)
Q Consensus 210 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 289 (380)
+|+.|+++++||..+++.+..+. +++ |++. ..... .
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~-------~~~-p~Gh----------------------------------~~~~l--s 290 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVML-------YCL-PPGQ----------------------------------AGRFL--E 290 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEE-------ECC-CTTC----------------------------------CCCEE--E
T ss_pred ccCCCcEEEEEECCCCEEEEEEE-------eec-cCCC----------------------------------cceeE--c
Confidence 67788889999988877654221 111 2211 01111 2
Q ss_pred EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCc-eEEEEEecCCCEEEEEeeCCeE
Q psy6984 290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM-CLSLAWSTDGQTLFAGYSDNTI 368 (380)
Q Consensus 290 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~g~~dg~v 368 (380)
.+.++.++++|+.|++|++||+..+.. +..+. .|... +..++|||||++|++|+.|++|
T Consensus 291 g~~sg~~lASgS~DgTIkIWDl~tGk~-----------l~tL~---------gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 291 GDVKDHCAAAILTSGTIAIWDLLLGQC-----------TALLP---------PVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCSE-----------EEEEC---------CC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCcE-----------EEEec---------CCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 233488999999999999998755433 33222 12222 3358999999999999999999
Q ss_pred EEEEe
Q psy6984 369 RVWQV 373 (380)
Q Consensus 369 ~iw~~ 373 (380)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99996
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=9.7e-29 Score=221.03 Aligned_cols=266 Identities=13% Similarity=0.137 Sum_probs=209.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV 155 (380)
Q Consensus 77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 155 (380)
..+++++.|+.|++||+.+++....+..|. .+.+++|+|+++.+ ++++.|+.|++||..+......+... ..+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccce
Confidence 467889999999999999999988887664 58999999999977 67779999999998776665554433 379999
Q ss_pred EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984 156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHLHTLVHN 234 (380)
Q Consensus 156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~ 234 (380)
+|+|+++. ++++++.++.|++||+.+.+.......+ ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+...
T Consensus 80 ~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 80 AVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred EECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 99998652 4456667899999999998876666544 468999999999977 78888999999999999988888877
Q ss_pred CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee---CCCcEEEEec
Q psy6984 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS---RDKTIKLWNT 311 (380)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~v~iw~~ 311 (380)
..+..++|+|++....+ ....++.+.+|+...++....+ .+...+.+++|+|++++|++++ .++.|++||+
T Consensus 158 ~~~~~~~~~~dg~~l~~-----~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYV-----ANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SSEEEEEECTTSSEEEE-----EETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCcceEEECCCCCEEEE-----EeCCCCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 88899999999865322 1234577999999888765443 3456788999999999999887 6899999987
Q ss_pred ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEE-EEEeeCCeEEEEEee
Q psy6984 312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTL-FAGYSDNTIRVWQVS 374 (380)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~g~~dg~v~iw~~~ 374 (380)
..+..+..+.. ...+..++|+|||++| ++++.|+.|++||+.
T Consensus 232 ~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 232 GTNKITARIPV---------------------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp TTTEEEEEEEC---------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEec---------------------CCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 65433222110 1124678999999988 566789999999975
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=229.28 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=178.1
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---------CcceEE
Q psy6984 72 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---------AHCKFT 142 (380)
Q Consensus 72 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---------~~~~~~ 142 (380)
+.+++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+++++|+.. ......
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 44678899999999999999999998887776 466788888887 9999999999999754 333344
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 221 (380)
....+|...|.+++++|.....++++++.|+.|++||+++.+...... .|...+.+++|+|++.+|++|+.|+.|++||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 445567788999999992223489999999999999999887755443 4455799999999999999999999999999
Q ss_pred CCCCcEE-EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEE
Q psy6984 222 LNDGKHL-HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVS 299 (380)
Q Consensus 222 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s 299 (380)
+++++.+ .. +. .|...|.+++|+|++.+|++
T Consensus 199 ~~~~~~~~~~-----------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 199 LSSPDQASSR-----------------------------------------------FPVDEEAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp SSCTTSCCEE-----------------------------------------------CCCCTTSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCccE-----------------------------------------------EeccCCCCEEEEEEeCCCCEEEE
Confidence 9876532 11 11 14567889999999999999
Q ss_pred eeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCce--EEEEEecCCCEEEEEee-CCeEEEEEeee
Q psy6984 300 SSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYS-DNTIRVWQVSV 375 (380)
Q Consensus 300 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~g~~-dg~v~iw~~~~ 375 (380)
++ |+.|++||+........ +.. ...+...+ .+++|+|+|++|++++. |+.|+||++..
T Consensus 232 ~~-~~~v~iwd~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 232 EC-DQTVVCFDLRKDVGTLA-----------YPT------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EE-SSBEEEEETTSSTTCBS-----------SCC------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred Ee-CCeEEEEEcCCCCccee-----------ecc------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 99 55999999754432111 000 00001111 36999999999999988 99999998853
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-29 Score=228.06 Aligned_cols=227 Identities=13% Similarity=0.128 Sum_probs=187.3
Q ss_pred EecCcccceEEEEeCCCCCCeE-EEeeCCCeEEEeecC--CCCCCccccccccc--CCCcceEEEEEccCCCEEEEEeCC
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTI-LSCSRDNTLIIWKLT--RDDTNYGVPQKRLK--GHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
...+|.+.|++++|+|+ +.+| ++++.||+|++|++. .... ...+. .|...|.+++|+|++++|++|+.|
T Consensus 97 ~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNV-----LKLRKRFCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp ---CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSC-----EEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCce-----eeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence 44578889999999998 5664 899999999999987 3221 22232 567889999999999999999999
Q ss_pred CcEEEEECCCCceee----eecccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984 86 KTLRLWDLAAGKTTR----RFEDHTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS 158 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 158 (380)
|.|++|++.+++... .+..|...|.+++|+|+ ++++++++.|+.|++||+...........+|...|.+++|+
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG 250 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence 999999998876554 67789999999999999 99999999999999999887666555556899999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-------------------------CccceEEEEEcCCCCEEEEEc-
Q psy6984 159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-------------------------HTGYLNTVTVSPDGSLCASGG- 212 (380)
Q Consensus 159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~l~~~~- 212 (380)
++ .+|++++.|+.|++||+.+++....+.. ....+..+.++|+++++++++
T Consensus 251 -d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 251 -KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp -ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred -CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 54 4899999999999999998876655542 234688999999999999998
Q ss_pred CCCcEEEEEC--CCC---cEEEEEEecCceEEEEeecCc
Q psy6984 213 KDMNAMLWDL--NDG---KHLHTLVHNDIITALCFSPNR 246 (380)
Q Consensus 213 ~d~~i~i~d~--~~~---~~~~~~~~~~~i~~~~~~~~~ 246 (380)
.|+.|++|++ ..+ +.+..+.....+.+++|+|++
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE 366 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE
T ss_pred CCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc
Confidence 8999999999 555 555666656889999999964
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=8e-29 Score=210.01 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=138.1
Q ss_pred CCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeeeecccC---CCeEE
Q psy6984 38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS---DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT---KDVLS 111 (380)
Q Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---~~v~~ 111 (380)
|+.|++|++..+.. ....+.+|...++.++|++ ++.+|++|+.|++|+|||+.+++.++.+.+|. ..+.+
T Consensus 156 d~~V~~~~~s~dG~----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~ 231 (356)
T 2w18_A 156 DQQVEVMTFAEDGG----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCH 231 (356)
T ss_dssp TCEEEEEEECTTSC----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEE
T ss_pred CCcEEEEEECCCCc----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEE
Confidence 88888888754321 1234567888889999998 77999999999999999999999999997653 36778
Q ss_pred EEEeCCCCEE------------EEEeCCCcEEEEeCCCcceEEEe----eCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984 112 VAFSVDNRQI------------VSSSRDKTIKLWNTLAHCKFTIV----EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175 (380)
Q Consensus 112 ~~~~~~~~~~------------~s~~~d~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v 175 (380)
++|+|+|.++ ++|+.|+++++||..++...... ..+|...+.+..++ ..++++++.|++|
T Consensus 232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----g~~lASgS~DgTI 307 (356)
T 2w18_A 232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK----DHCAAAILTSGTI 307 (356)
T ss_dssp EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE----TTEEEEEETTSCE
T ss_pred EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC----CCEEEEEcCCCcE
Confidence 8999999876 66889999999998776654433 24665554444433 3478999999999
Q ss_pred EEEeCCCceeeEeeeCCccceE-EEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 176 KVWNLTNCKLKINHSGHTGYLN-TVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
++||+.+++....+.+|...+. .++|+|+|++|++|+.|++|++||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999998888888877655 5899999999999999999999985
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.3e-28 Score=217.30 Aligned_cols=252 Identities=14% Similarity=0.164 Sum_probs=172.9
Q ss_pred EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984 90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 169 (380)
||++.+.+.+.....|...|.+++|+|||+++++|+.++ +++|+............ ..+..+.+.+..+ .+++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRMLHRTN-YVAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEECTTSS-EEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEcCCCC-EEEEEE
Confidence 566777777777788999999999999999999988775 78999765443332221 2366777877643 244678
Q ss_pred eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEEecCceEEEEeecCccc
Q psy6984 170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG-KHLHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 248 (380)
+.|+.|++||+.+++....+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .+
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~ 149 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GL 149 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TE
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cE
Confidence 888999999999988776665 56689999999874 3333 4789999999887 55544443 444455555 11
Q ss_pred ceeeeeeeeeccccceEEEEcCCce----------------eeeeeeccccceeEEEEeecCCEEEEeeCCCc-EEEEec
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGK----------------METPFFSLFRDVLSVAFSVDNRQIVSSSRDKT-IKLWNT 311 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-v~iw~~ 311 (380)
+.......++.+.+|++..++ ....+..|...|.+++|+|++++|++|+.||+ |++||+
T Consensus 150 ----la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 150 ----LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp ----EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred ----EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 111113457889999998754 14556788899999999999999999999998 999987
Q ss_pred ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
..+..+. .+. ...|...|.+++|+|||++|++|+.|+.|+||++...
T Consensus 226 ~~~~~~~-----------~~~-------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 226 EDGVLVR-----------EFR-------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTCCEEE-----------EEE-------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCcEEE-----------EEE-------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 6543322 111 0125567899999999999999999999999998643
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=4.5e-27 Score=217.89 Aligned_cols=325 Identities=10% Similarity=0.071 Sum_probs=232.8
Q ss_pred eCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCcceEEEEEccCCCEEEEEeCCCcEEEEEC--CCCceee
Q psy6984 24 TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSHFISDIVLSSDGNYALSGSWDKTLRLWDL--AAGKTTR 100 (380)
Q Consensus 24 ~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~--~~~~~~~ 100 (380)
++|. +.++++++.|++|.+||...... ...+. ++. +..++|+|||++|++++.|+.|.+||+ .+++.+.
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~~t~~~-----~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDGDSKKI-----VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEETTTCCE-----EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cCCC-CEEEEEEcCCCeEEEEECCCceE-----EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence 5665 56888999999999999765432 22333 443 889999999999999999999999999 7888888
Q ss_pred eecccCCCeEEEEEeC----CCCEEEEEe-CCCcEEEEeCCCcceEEEeeCC---------C-cCcEEEEEEccCCCCCE
Q psy6984 101 RFEDHTKDVLSVAFSV----DNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDG---------H-SDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 101 ~~~~h~~~v~~~~~~~----~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~~ 165 (380)
.+. +...+..++|+| ||+++++++ .+++|.+||..+......+... | ...+..+.++|++.. +
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-~ 294 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-F 294 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE-E
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE-E
Confidence 776 445679999999 999999887 5899999998766555444321 2 236889999997653 6
Q ss_pred EEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEE-EcCCCcEEEEECCCCcEEEEEEe-----cCceE
Q psy6984 166 IVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLNDGKHLHTLVH-----NDIIT 238 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~ 238 (380)
+++...++.|.+||+.+.+... ....+...+..+.|+|+|+++++ +..++.|.+||..+++.+..+.. .....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 7788889999999998754322 12234556788999999997665 45689999999999988877652 22222
Q ss_pred EEEeecCcccceeeeeeeeeccccceEEEEcCC-------ceeeeeeeccccceeEEEEeecCCEEEEee-------CCC
Q psy6984 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINH-------GKMETPFFSLFRDVLSVAFSVDNRQIVSSS-------RDK 304 (380)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg 304 (380)
.+ ++|++.... ......+..+.+|++.. .+....+..+...+..++++|++++|++++ .++
T Consensus 375 ~~-~~p~~g~~~----~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 375 NF-VHPKYGPVW----STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp EE-EETTTEEEE----EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred cc-CCCCCccEE----EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence 22 355532111 11122457788999887 666677777777788999999999999987 277
Q ss_pred cEEEEecccceee-eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-----eCCeEEEEEeee
Q psy6984 305 TIKLWNTLAHCKF-TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-----SDNTIRVWQVSV 375 (380)
Q Consensus 305 ~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-----~dg~v~iw~~~~ 375 (380)
+|.+||+.+.... ..+.... . .....+...+..+.|+|||+.|+++. .|+.|.|||..+
T Consensus 450 ~v~v~d~~~~~~~~~~~~v~~-----------~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 450 SVAVFDLKNLDAKYQVLPIAE-----------W-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp CEEEEETTCTTSCCEEECHHH-----------H-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred eEEEEECCCCCCCeEEeechh-----------h-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 9999997654322 1111000 0 00112345678999999999988653 479999999754
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=7.1e-28 Score=216.77 Aligned_cols=308 Identities=12% Similarity=0.056 Sum_probs=223.0
Q ss_pred ccceEEEEeCCCCCCeEEEee----CCC----eEEEeec--CCCCCCcccccccccCCCcceEEEEEcc-----------
Q psy6984 16 NGWVTQIATNPKFPDTILSCS----RDN----TLIIWKL--TRDDTNYGVPQKRLKGHSHFISDIVLSS----------- 74 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~----~dg----~v~vw~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------- 74 (380)
...++...|.+...+++++|+ .|| ++++||+ ..... +....+.+|...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV---LAQNSYKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE---EEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE---EeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 346777788887667888886 568 9999998 54431 11234667777777666554
Q ss_pred ---CCCEEEEEeCC------CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCcceEE
Q psy6984 75 ---DGNYALSGSWD------KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAHCKFT 142 (380)
Q Consensus 75 ---~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~v~iwd~~~~~~~~ 142 (380)
.+..++.++.+ +.|++||+.. ...+.+..|...+.+++|+|||+.+++++.++ .|++||+.++....
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~ 217 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 217 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence 25667666654 7999999974 45667778999999999999999999999885 99999987765543
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-CC--cE
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-DM--NA 217 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i 217 (380)
. ..+...+.+++|+|+++. ++++++.++ .|++||+.+.+. ..+..|...+.+++|+|+|++|++++. ++ .|
T Consensus 218 l--~~~~~~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 V--ASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp E--ECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred e--ecCCCcccCEEEcCCCCE-EEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 3 246678999999998753 334666555 499999988765 455667788999999999999888776 44 68
Q ss_pred EEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984 218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 297 (380)
++||+.+++......+...+..++|+|++.+...... ......+.+|+..+++.. .+..+. .+.+++|+|+|++|
T Consensus 294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~---~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l 368 (415)
T 2hqs_A 294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMV 368 (415)
T ss_dssp EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE---CSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEE
T ss_pred EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEEC---cCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEE
Confidence 8889988765443345677889999999876443221 112357888999887663 333433 78899999999999
Q ss_pred EEeeCCC---cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC
Q psy6984 298 VSSSRDK---TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ 357 (380)
Q Consensus 298 ~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 357 (380)
++++.|+ .|++|++..+.. .. ...+...+.+++|+|.-.
T Consensus 369 ~~~s~~~~~~~l~~~d~~g~~~------------~~---------l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTDGRFK------------AR---------LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTEEEEEEEETTSCCE------------EE---------CCCSSSEEEEEEECCCCC
T ss_pred EEEEcCCCccEEEEEECCCCcE------------EE---------eeCCCCCCcCCccccccc
Confidence 9988776 788887532211 11 123455688999999754
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.8e-25 Score=216.24 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=220.3
Q ss_pred ccceEEEEeCCCCCCeEEEeeC-CC-----eEEEeecCCCCCCcccccccccCCC----------------------cce
Q psy6984 16 NGWVTQIATNPKFPDTILSCSR-DN-----TLIIWKLTRDDTNYGVPQKRLKGHS----------------------HFI 67 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~h~----------------------~~v 67 (380)
...|+++.|+|+ +++|++++. |+ +|++|++....... ......+. ..+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 356999999998 788999888 88 99999986543211 11111111 347
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
..++|+|||++|++++. +.|++||+.+++ ....+..|...+..++|+|||+.++.++. +.|.+||+.++.......
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc
Confidence 88999999999999987 899999998873 44556678888999999999999998875 589999987654433322
Q ss_pred CCCcCc----------------EEEEEEccCCCCCEEEEEeCCC---------------------------------eEE
Q psy6984 146 DGHSDW----------------VSCVRFSPNHQNPIIVSAGWDR---------------------------------MVK 176 (380)
Q Consensus 146 ~~~~~~----------------v~~~~~~~~~~~~~l~s~~~d~---------------------------------~v~ 176 (380)
.+... +..++|+|+++. |++++.|+ .|+
T Consensus 190 -~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 190 -DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp -CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred -CCccceeccccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 22221 367999998864 55554444 788
Q ss_pred EEeCCC-ceeeEeee--CCccceEEEEEcCCCCEEEEEcC-----CCcEEEEECCCCcEEEEEEecC-----ceEEEEee
Q psy6984 177 VWNLTN-CKLKINHS--GHTGYLNTVTVSPDGSLCASGGK-----DMNAMLWDLNDGKHLHTLVHND-----IITALCFS 243 (380)
Q Consensus 177 iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~-----~i~~~~~~ 243 (380)
+||+.+ .+...... .|...+..++| |||++|++++. +..|++||+.+++....+.... .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999987 66543332 46778999999 99999887653 5789999999988766554332 34688999
Q ss_pred cCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEE-EEeecCCEEEE-eeCCC--cEEEEecccceeee
Q psy6984 244 PNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSV-AFSVDNRQIVS-SSRDK--TIKLWNTLAHCKFT 318 (380)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~v~iw~~~~~~~~~ 318 (380)
|++.+... ...++...+|.++ .++ ...+..+...+..+ .|+|+++.|+. ++.|+ .+++|++..
T Consensus 346 pdg~~~~~------~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~----- 413 (741)
T 2ecf_A 346 DDGSILWS------SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL----- 413 (741)
T ss_dssp TTSCEEEE------ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET-----
T ss_pred CCCeEEEE------ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc-----
Confidence 99873221 1223444555543 233 55566666677777 59999997754 44555 899997532
Q ss_pred EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC----CeEEEEEe
Q psy6984 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD----NTIRVWQV 373 (380)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d----g~v~iw~~ 373 (380)
.+. ....+. ....+..++|||||+.|+....+ ..+.+|+.
T Consensus 414 ----~g~-~~~~l~----------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 414 ----QGG-QPQRLS----------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp ----TCC-CCEECC----------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred ----CCC-Ceeecc----------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 111 011111 12345689999999998865443 35777764
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=2.5e-25 Score=222.59 Aligned_cols=322 Identities=13% Similarity=0.063 Sum_probs=228.0
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEeeCC------CeEEEeecCCCCCCcccccccccCCCcce-------EEEEEccCC
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSCSRD------NTLIIWKLTRDDTNYGVPQKRLKGHSHFI-------SDIVLSSDG 76 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~d------g~v~vw~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~ 76 (380)
..|.+|.+.+.+++|+|+ +++|+.++.+ ..|.+|++.... ...+..|...+ ..++|+|||
T Consensus 46 ~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 46 RKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE------IKRITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp EEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE------EEECCCCCEEEETTEECSEEEEECTTC
T ss_pred EEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC------eEEcccCCCcccccccccccccCCCCC
Confidence 467789999999999998 6788877543 378899875431 34567788777 899999999
Q ss_pred CEEEEEeCC------CcEEEEECCCCceee-------------------------------------------------e
Q psy6984 77 NYALSGSWD------KTLRLWDLAAGKTTR-------------------------------------------------R 101 (380)
Q Consensus 77 ~~l~s~~~d------~~i~vwd~~~~~~~~-------------------------------------------------~ 101 (380)
+.+++++.+ ..|++|++.+++... .
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 977777754 358888876554321 1
Q ss_pred ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984 102 FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180 (380)
Q Consensus 102 ~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 180 (380)
+..|...+.++.|+++ ..+++++.|+.+++|.... ......+. .|. .+...+|+|+++. ++.+ .++.|.+||+
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~--la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRR--ILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSC--EEEE-ETTEEEEECT
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCE--EEEE-eCCEEEEecC
Confidence 2346667788888887 5666778889999997542 21222222 233 3556799998763 5544 4899999999
Q ss_pred CCceeeEeeeC-----------CccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC-ceEEEEeecCcc
Q psy6984 181 TNCKLKINHSG-----------HTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND-IITALCFSPNRS 247 (380)
Q Consensus 181 ~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~i~~~~~~~~~~ 247 (380)
....+. .+.+ |...+..++|+ |+|+++++++ ++.+++|+...++......+.. .+..++|+ ++.
T Consensus 273 ~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 273 DTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred CceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence 544333 3333 33468899999 9999998887 7899999998887655444555 78889998 765
Q ss_pred cceeeeeeeeeccccceE-EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccce
Q psy6984 248 FQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKK 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 326 (380)
...... ....++ +|+...++... +..+...+..++|+|||++|++++.++.|++||+.++....+..
T Consensus 350 ~l~~~s------~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~----- 417 (1045)
T 1k32_A 350 AFIHGT------REGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER----- 417 (1045)
T ss_dssp EEEEEE------TTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----
T ss_pred eEEEEE------CCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----
Confidence 433221 144666 77877665433 33566778999999999999999999999999875543322211
Q ss_pred EEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC----------eEEEEEee
Q psy6984 327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN----------TIRVWQVS 374 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg----------~v~iw~~~ 374 (380)
.+...+..++|||||++|++++.++ .|++||+.
T Consensus 418 ---------------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 418 ---------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp ---------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred ---------------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 1233456789999999999877654 89999974
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1e-24 Score=196.19 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=201.4
Q ss_pred cceEEEEEccCC-CEEEEEe----CCC----cEEEEEC--CCCcee--eeecccCCCeEEEEEeC--------------C
Q psy6984 65 HFISDIVLSSDG-NYALSGS----WDK----TLRLWDL--AAGKTT--RRFEDHTKDVLSVAFSV--------------D 117 (380)
Q Consensus 65 ~~v~~~~~~~~~-~~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~--------------~ 117 (380)
..+....|.+.| +++++|+ .|| .|++||+ .+++.+ ..+..|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 356667777776 4666776 467 8999999 888876 45778887777776664 2
Q ss_pred CCEEEEEeCC------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC---eEEEEeCCCceeeEe
Q psy6984 118 NRQIVSSSRD------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR---MVKVWNLTNCKLKIN 188 (380)
Q Consensus 118 ~~~~~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~ 188 (380)
+..++.++.+ +.|++||.......... .|...+.+++|+|+++ .|++++.++ .|++||+.+++.. .
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE--EESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 5667666654 79999998755443332 4677899999999875 677777775 9999999987764 4
Q ss_pred eeCCccceEEEEEcCCCCEEE-EEcCCCc--EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984 189 HSGHTGYLNTVTVSPDGSLCA-SGGKDMN--AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI 265 (380)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (380)
...|...+.+++|+|+|+.|+ +++.++. |++||+.+++......+...+..++|+|++........ ......++
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~---~~g~~~i~ 294 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD---QAGRPQVY 294 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC---TTSSCEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC---CCCCcEEE
Confidence 556778899999999999887 6666654 99999998877555567778999999999875433221 01123577
Q ss_pred EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCC
Q psy6984 266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKA 342 (380)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (380)
+|+...++.. .+..+...+.+++|+|+|++|++++.+ ..|++|+...+... .+. .
T Consensus 295 ~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~------------~l~---------~ 352 (415)
T 2hqs_A 295 KVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ------------VLS---------S 352 (415)
T ss_dssp EEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE------------ECC---------C
T ss_pred EEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE------------Eec---------C
Confidence 7788776543 233445568899999999999988764 57889986443211 110 0
Q ss_pred CCCceEEEEEecCCCEEEEEeeCC---eEEEEEee
Q psy6984 343 DPPMCLSLAWSTDGQTLFAGYSDN---TIRVWQVS 374 (380)
Q Consensus 343 ~~~~~~~~~~s~dg~~l~~g~~dg---~v~iw~~~ 374 (380)
+ ..+..++|+|||++|++++.++ .|.+|++.
T Consensus 353 ~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 353 T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 1 1467899999999999888776 68888764
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.2e-24 Score=209.94 Aligned_cols=320 Identities=12% Similarity=0.065 Sum_probs=208.5
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccCCCEEEEEeCC--------
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSDGNYALSGSWD-------- 85 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d-------- 85 (380)
..+.+++|+|+ ++++++ +.||+|++||+...... ..+..|.. .|.+++|+|||++|++++.+
T Consensus 17 ~~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 17 IHDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred ccccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 34678899998 566665 78999999998754321 22334443 48999999999999999874
Q ss_pred -CcEEEEECCCCceeeee---cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-----------
Q psy6984 86 -KTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD----------- 150 (380)
Q Consensus 86 -~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----------- 150 (380)
+.|++||+.+++. ..+ ..|...+..++|+|||+.++.++. +.|.+||..++........++..
T Consensus 90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred eeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 7888999998876 333 234445888999999999999887 78999998766554443322221
Q ss_pred ------cEEEEEEccCCCCCEEEEEeCCC----------------------------------eEEEEeCCCceeeEeee
Q psy6984 151 ------WVSCVRFSPNHQNPIIVSAGWDR----------------------------------MVKVWNLTNCKLKINHS 190 (380)
Q Consensus 151 ------~v~~~~~~~~~~~~~l~s~~~d~----------------------------------~v~iwd~~~~~~~~~~~ 190 (380)
.+.+++|+|+++ .|++++.++ .|++||+.+.+....+.
T Consensus 168 ~ee~~~~~~~~~~SpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGT--RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHTTSSSSEEEEECTTSS--EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred EEEeccCcceEEECCCCC--EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 237899999876 465554332 79999998876433443
Q ss_pred CC------ccceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEEEEE--ecCce----EEEEeecCcccceee-e
Q psy6984 191 GH------TGYLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGKHLHTLV--HNDII----TALCFSPNRSFQKIK-L 253 (380)
Q Consensus 191 ~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~--~~~~i----~~~~~~~~~~~~~~~-~ 253 (380)
.+ ...+..++|+|||+++++.+. +..|++||+.+++....+. +...+ ..++|+|++...... .
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 33 567899999999998876643 3679999999988665543 22333 378999998764432 1
Q ss_pred eeeee-ccccceEEEE-cCCcee--eeeeeccccceeE-EEEeecCCEEEEeeCC---CcEEEEecccceeeeEeecccc
Q psy6984 254 DISRT-LQKSNLILYP-INHGKM--ETPFFSLFRDVLS-VAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVDLETK 325 (380)
Q Consensus 254 ~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~ 325 (380)
..... .....+++|+ ...+.. ...+......+.. ++|+|||+.|+..+.+ +.+++|++... +.
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~---------~~ 396 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV---------GN 396 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS---------TT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC---------CC
Confidence 11000 0012456666 233330 3333333344544 6999999998766654 78999975321 11
Q ss_pred eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984 326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g 362 (380)
.....+.. ...+...+..++|||||++|+..
T Consensus 397 ~~~~~l~~------~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 397 FNRQCLSC------DLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp CCCBCSST------TSSSSCCCCEEEECTTSSEEEEE
T ss_pred CCcceecc------cccCCCCeEEEEECCCCCEEEEE
Confidence 00000100 00023345689999999988764
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.6e-24 Score=196.72 Aligned_cols=302 Identities=13% Similarity=0.146 Sum_probs=216.2
Q ss_pred ceeeEEeEEec-CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecC--CCCCCcccccccccCCCcceEEEEEcc----C
Q psy6984 3 TETLQLRGTLN-GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLT--RDDTNYGVPQKRLKGHSHFISDIVLSS----D 75 (380)
Q Consensus 3 ~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~----~ 75 (380)
.++.++..++. +|. +..+.++|+ +++|++++.|++|++||+. ... ....+. +...+..++|+| |
T Consensus 166 ~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~~~d 236 (543)
T 1nir_A 166 GDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFKGYE 236 (543)
T ss_dssp TTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCSTTCT
T ss_pred CCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCcCCC
Confidence 44566777887 444 889999998 7899999999999999983 221 122233 344678999999 9
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceeeeecc----------cCC-CeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEE
Q psy6984 76 GNYALSGS-WDKTLRLWDLAAGKTTRRFED----------HTK-DVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFT 142 (380)
Q Consensus 76 ~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~ 142 (380)
|++|++++ .++.|.+||..+++.+..+.. |.. .+..+.++|++.. +++...++.|.+||........
T Consensus 237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 99999988 489999999999998887754 223 6889999997765 4567788999999976543222
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----CccceEEEEEcCC-CCEEEEEc-CCCc
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HTGYLNTVTVSPD-GSLCASGG-KDMN 216 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~d~~ 216 (380)
.....+...+.++.|+|+++. +++++..+++|.+||+.++++...... |.+....+ ++|+ +..++++. .|+.
T Consensus 317 ~~~i~~~~~~~~~~~spdg~~-l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~ 394 (543)
T 1nir_A 317 VTSIGAAPFLHDGGWDSSHRY-FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS 394 (543)
T ss_dssp EEEEECCSSCCCEEECTTSCE-EEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred eEEeccCcCccCceECCCCCE-EEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce
Confidence 111124556778999998752 344556689999999999887766553 54433333 4776 66677775 6899
Q ss_pred EEEEECCC-------CcEEEEEEe-cCceEEEEeecCcccceeeeeeee-eccccceEEEEcCCceeeeee---------
Q psy6984 217 AMLWDLND-------GKHLHTLVH-NDIITALCFSPNRSFQKIKLDISR-TLQKSNLILYPINHGKMETPF--------- 278 (380)
Q Consensus 217 i~i~d~~~-------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------- 278 (380)
|.+||+.+ .+.+..+.. ...+..+.++|++++......... ...+..+.+|++.+++.....
T Consensus 395 V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 395 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 474 (543)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc
Confidence 99999988 788888864 456778999999876443221110 002568999999887654222
Q ss_pred eccccceeEEEEeecCCEEEEe-----eCCCcEEEEecccce
Q psy6984 279 FSLFRDVLSVAFSVDNRQIVSS-----SRDKTIKLWNTLAHC 315 (380)
Q Consensus 279 ~~~~~~v~~~~~s~~~~~l~s~-----~~dg~v~iw~~~~~~ 315 (380)
..+...+..+.|+|+|++++.+ +.|+.|.+||..+..
T Consensus 475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 2335678899999999998865 247999999865443
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3e-24 Score=207.75 Aligned_cols=284 Identities=13% Similarity=0.090 Sum_probs=204.6
Q ss_pred CcceEEEEEccCCCEEEEEeC-CC-----cEEEEECCCCceeeeecccCC------------------------CeEEEE
Q psy6984 64 SHFISDIVLSSDGNYALSGSW-DK-----TLRLWDLAAGKTTRRFEDHTK------------------------DVLSVA 113 (380)
Q Consensus 64 ~~~v~~~~~~~~~~~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~h~~------------------------~v~~~~ 113 (380)
...+..++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 345889999999999999998 88 899999999887776655433 378899
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCc---ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984 114 FSVDNRQIVSSSRDKTIKLWNTLAH---CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS 190 (380)
Q Consensus 114 ~~~~~~~~~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 190 (380)
|+|||+++++++. +.|.+||+.++ .... ...+...+.+++|+|+++ .|+.++ ++.|++||+.+++......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999999999887 89999998765 3322 234567799999999876 566665 5699999998876554333
Q ss_pred CCccc----------------eEEEEEcCCCCEEEEEcCCC---------------------------------cEEEEE
Q psy6984 191 GHTGY----------------LNTVTVSPDGSLCASGGKDM---------------------------------NAMLWD 221 (380)
Q Consensus 191 ~~~~~----------------i~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~d 221 (380)
.+... +..++|+|||++|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 33221 47799999999999987765 889999
Q ss_pred CCC-CcEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc----ceeEEEEeec
Q psy6984 222 LND-GKHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR----DVLSVAFSVD 293 (380)
Q Consensus 222 ~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~ 293 (380)
+.+ ++..... .+...+..++| |++........ ........+++|+..+++....+..+.. .+..++|+||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 988 7654433 24567889999 99876543321 1122356788899888776544433332 3468899999
Q ss_pred CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEE-EEecCCCEEEE-EeeCC--eEE
Q psy6984 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSL-AWSTDGQTLFA-GYSDN--TIR 369 (380)
Q Consensus 294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~-g~~dg--~v~ 369 (380)
|+++++++.||.+++|.... .+. ...+ ..+...+..+ +|+|||+.|+. ++.++ .++
T Consensus 348 g~~~~~~~~~g~~~l~~~~~---------~~~--~~~l---------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDS---------KGK--AAAL---------THGNWSVDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp SCEEEEECTTSSCEEEEECS---------SSC--EEES---------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred CeEEEEecCCCccEEEEEcC---------CCC--eeee---------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 99999999999999986531 111 1111 1122345566 59999998764 55555 899
Q ss_pred EEEeee
Q psy6984 370 VWQVSV 375 (380)
Q Consensus 370 iw~~~~ 375 (380)
||++..
T Consensus 408 l~~~~~ 413 (741)
T 2ecf_A 408 IYAVPL 413 (741)
T ss_dssp EEEEET
T ss_pred EEEEEc
Confidence 999864
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.5e-23 Score=181.60 Aligned_cols=277 Identities=11% Similarity=0.103 Sum_probs=194.3
Q ss_pred EeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CCcEEEEECCCCce-ee
Q psy6984 23 ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DKTLRLWDLAAGKT-TR 100 (380)
Q Consensus 23 ~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~-~~ 100 (380)
.+.+.....+++++.++.|++||....... .....+...+ .++|+|+|+++++++. ++.|++||+.+++. ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 344543456888889999999998654321 1222334455 9999999997776665 88999999999887 66
Q ss_pred eecccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe-EE
Q psy6984 101 RFEDHTKDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM-VK 176 (380)
Q Consensus 101 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~-v~ 176 (380)
.+..+..+..+++|+|++++++++..++ .|.+||............ .....+++|+|+++. ++++...++. |.
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~-l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNG-LILIDRSSANTVR 154 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSC-EEEEEETTTTEEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCE-EEEEecCCCceEE
Confidence 6666666655599999999999555553 899999877665544432 234689999998764 5566666677 99
Q ss_pred EEeCCCceeeE----eeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcE---EEEEEecCceEEEEeecCccc
Q psy6984 177 VWNLTNCKLKI----NHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKH---LHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 177 iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~~~~~~~ 248 (380)
+|++....... ........+..++|+|+|+++ +++..++.|.+||+.+++. +..+.....+..++|+|++.+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST 234 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence 99987533221 111234457899999999965 5555789999999998887 777777778889999999875
Q ss_pred ceeeeeeeeeccccceEEEEcCCcee--eeeeecc----cc---ceeEEEEeecCCEEEEee-CCCcEEEEeccc
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGKM--ETPFFSL----FR---DVLSVAFSVDNRQIVSSS-RDKTIKLWNTLA 313 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~ 313 (380)
..... .....+.+|+..+++. ...+... .. ....++|+||+++|+.++ .++.|++|++..
T Consensus 235 l~v~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 235 VYVLT-----ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEC-----SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EEEEE-----cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 43221 1345578899887776 2211111 11 124589999999886555 467999998754
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.8e-23 Score=209.16 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=216.2
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR 89 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 89 (380)
..+.+|.+.+.++.|+++ .++++++.|+++++|.++..... ...+..|. .+....|+|||++|+.+. ++.|+
T Consensus 197 ~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~----~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~ 268 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIY 268 (1045)
T ss_dssp EEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS----CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred EECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCc----ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence 345799999999999876 57778888999999987643211 22334444 356779999999998885 89999
Q ss_pred EEECCCCceeeeecc-----------cCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-cEEEEE
Q psy6984 90 LWDLAAGKTTRRFED-----------HTKDVLSVAFS-VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-WVSCVR 156 (380)
Q Consensus 90 vwd~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~ 156 (380)
+||+...+.. .+.. |...+.+++|+ |||+.+++++ ++.+.+|+........ ...+.. .+.+++
T Consensus 269 ~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 269 IFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRG 344 (1045)
T ss_dssp EECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEEC
T ss_pred EecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEeee
Confidence 9999544333 4443 34468899999 9999999888 7889999976654332 234555 788999
Q ss_pred EccCCCCCEEEEEeCCCeEE-EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-Eec
Q psy6984 157 FSPNHQNPIIVSAGWDRMVK-VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHN 234 (380)
Q Consensus 157 ~~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~ 234 (380)
|+ +++ .|+.++.+..+. +||+...+..... +|...+..++|+|+|++|++++.++.+++||+.+++..... .+.
T Consensus 345 ~s-dg~--~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 345 GD-TKV--AFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp SS-SEE--EEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred Ec-CCC--eEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 98 654 566777788888 9999876654333 77788999999999999999999999999999999877666 466
Q ss_pred CceEEEEeecCcccceeeeeee----eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 235 DIITALCFSPNRSFQKIKLDIS----RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
..+..++|+|++.+........ .......+++|+...++ ...+..+...+..++|+|||++|++++.++..+.|+
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 7788999999998654332110 00123578899998877 455666667788999999999999999988888887
Q ss_pred cc
Q psy6984 311 TL 312 (380)
Q Consensus 311 ~~ 312 (380)
..
T Consensus 500 ~~ 501 (1045)
T 1k32_A 500 RV 501 (1045)
T ss_dssp SS
T ss_pred hh
Confidence 54
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=4.6e-23 Score=180.53 Aligned_cols=280 Identities=12% Similarity=0.176 Sum_probs=181.1
Q ss_pred eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-CcEEEEECC--CCce--eeeeccc
Q psy6984 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-KTLRLWDLA--AGKT--TRRFEDH 105 (380)
Q Consensus 31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~~~--~~~~~~h 105 (380)
++++++.|+.|++|++.... .. .......|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG-AL--TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS-CE--EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCC-cE--EEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 45555789999999985321 11 111123466678899999999999998887 999999997 5543 3334433
Q ss_pred CCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC---cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeC
Q psy6984 106 TKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLA---HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL 180 (380)
Q Consensus 106 ~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~ 180 (380)
. .+..++|+|+++.+++++. ++.|.+||+.. ....... . ....+.+++|+|+++ .+++++ .++.|++||+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNR--TLWVPALKQDRICLFTV 158 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEE
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCC--EEEEecCCCCEEEEEEe
Confidence 3 7889999999998876664 88899999832 2222222 2 223478899999865 455554 8899999999
Q ss_pred CC-ceeeE----eeeC-CccceEEEEEcCCCCEEEE-EcCCCcEEEEECCC--CcEEEEEEecCceEEEEeecCccccee
Q psy6984 181 TN-CKLKI----NHSG-HTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLND--GKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 181 ~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
.+ .+... .... ....+..++|+|+++++++ +..++.+.+||+.. ++...... +...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~-------~~~~~~------ 225 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT-------LDMMPE------ 225 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE-------EECSCT------
T ss_pred cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee-------ccccCc------
Confidence 87 54322 1222 2346888999999997654 45889999999853 32110000 000000
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE-EeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 330 (380)
+ ......+..++|+|++++|+ ++..|+.|++|++..... +...+..
T Consensus 226 --------------------~------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-------~~~~~~~ 272 (343)
T 1ri6_A 226 --------------------N------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-------VLSKEGF 272 (343)
T ss_dssp --------------------T------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-------CEEEEEE
T ss_pred --------------------c------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-------ceEEeee
Confidence 0 00112355789999999877 455789999998752100 0111111
Q ss_pred eCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEee
Q psy6984 331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVS 374 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~ 374 (380)
+.. +. .+..++|+|||++|++++ .++.|.+|++.
T Consensus 273 ~~~---------~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 273 QPT---------ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEC---------SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecC---------CC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 110 11 145789999999988877 68999999775
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=3.5e-22 Score=175.78 Aligned_cols=271 Identities=12% Similarity=0.102 Sum_probs=199.1
Q ss_pred cceEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCC
Q psy6984 65 HFISDIVLSSDGNYALSGSW-------DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTL 136 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~ 136 (380)
..+..++++|+++++++++. ++.|.+||..+++....+.. ...+..++|+|+++.++ +...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45788999999999988875 46899999999988887754 34577899999999655 45567999999987
Q ss_pred CcceEEEeeCCCcC--------cEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE
Q psy6984 137 AHCKFTIVEDGHSD--------WVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL 207 (380)
Q Consensus 137 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 207 (380)
+......+..+... .+.+++++|+++. ++++. +.++.|.+||+.+.+.......+...+..++++|+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 76655544432211 2688999998753 33333 45889999999998877666645556888999999999
Q ss_pred EEEEcCCCcEEEEECCCCcEEEEEEe-----cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984 208 CASGGKDMNAMLWDLNDGKHLHTLVH-----NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF 282 (380)
Q Consensus 208 l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (380)
+++++.++.+.+||..+++.+..+.. ...+..++|+|++...... ....+.+.+|+..+++....+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-----DSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-----ESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-----eCCCCEEEEEECCCCcEEEEEEcCC
Confidence 99999999999999999988877653 3346789999998754322 1234778899998877655443222
Q ss_pred cceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984 283 RDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA 361 (380)
Q Consensus 283 ~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (380)
...++|+|++++++.++ .++.|.+||..++.....+.. ......++|+|||++|++
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------------------PTHPNSLALSADGKTLYV 330 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------CSEEEEEEECTTSCEEEE
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------------------CCCCCeEEEcCCCCEEEE
Confidence 35799999999655554 689999998755443322211 113467999999998877
Q ss_pred EeeC
Q psy6984 362 GYSD 365 (380)
Q Consensus 362 g~~d 365 (380)
+..+
T Consensus 331 ~~~~ 334 (353)
T 3vgz_A 331 SVKQ 334 (353)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 6655
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.9e-23 Score=201.10 Aligned_cols=319 Identities=15% Similarity=0.185 Sum_probs=204.2
Q ss_pred eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-ccc-ccccc-----------cCCCcceEEEEEccCCCEEEEEeCC
Q psy6984 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGV-PQKRL-----------KGHSHFISDIVLSSDGNYALSGSWD 85 (380)
Q Consensus 19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~-~~~~~-----------~~h~~~v~~~~~~~~~~~l~s~~~d 85 (380)
+..+.|. ++.+++++.|+ | +||+...... ..+ ....+ ..+...|.+++|+|| ++++.+. +
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4445565 35677777787 8 9998754320 111 00000 011145899999999 6666554 5
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----cceEEEeeCCCcC----------
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-----HCKFTIVEDGHSD---------- 150 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-----~~~~~~~~~~~~~---------- 150 (380)
+.|++||+.+++... +..+...+.+++|+|||+.++++ .++.|.+||+.+ +........++..
T Consensus 101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 999999998876554 34566778889999999999985 679999999876 5443332222221
Q ss_pred ---cEEEEEEccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeeEeee--CC
Q psy6984 151 ---WVSCVRFSPNHQNPIIVSAG---------------------------------WDRMVKVWNLTNCKLKINHS--GH 192 (380)
Q Consensus 151 ---~v~~~~~~~~~~~~~l~s~~---------------------------------~d~~v~iwd~~~~~~~~~~~--~~ 192 (380)
.+.++.|+|+++ .|++++ .+..|++||+.+.+...... .|
T Consensus 179 e~~~~~~~~~SpDg~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGS--CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp CTTCCCSEEECTTSS--EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hcCCCceEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 147899999876 566655 44689999998877543332 45
Q ss_pred ccceEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEE---ecC---ceEEEEeec--Ccccceeeeeeeeec
Q psy6984 193 TGYLNTVTVSPDGSLCASGGKDM-----NAMLWDLNDGKHLHTLV---HND---IITALCFSP--NRSFQKIKLDISRTL 259 (380)
Q Consensus 193 ~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~~~~~~~~~~~~ 259 (380)
...+..++|+|||++|++++.++ .|++||+.+++....+. ... .+..++|+| ++.+... ..
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~------~~ 330 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ------SR 330 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE------EC
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE------Ec
Confidence 67799999999999999887775 99999999984443332 121 235688999 8864321 12
Q ss_pred cccceEEEEcC-CceeeeeeeccccceeE-EEEeecCCEEEEeeCC-C--cEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984 260 QKSNLILYPIN-HGKMETPFFSLFRDVLS-VAFSVDNRQIVSSSRD-K--TIKLWNTLAHCKFTIVDLETKKMVEELRPD 334 (380)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (380)
.++...+|.+. .++....+..+...+.. ++|+|+++.|+.++.+ + .+++|.. +.++.. ...+
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~---------d~~~~~-~~~l--- 397 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI---------DIKGGK-TKDL--- 397 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE---------ETTCCC-CEES---
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE---------EcCCCC-ceec---
Confidence 23445566554 44444555555566766 7999999987765544 3 2444432 122211 1111
Q ss_pred cccccCCCCCCceEEEEEecCCCEEEEEeeC----CeEEEEEee
Q psy6984 335 VVSQSTKADPPMCLSLAWSTDGQTLFAGYSD----NTIRVWQVS 374 (380)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d----g~v~iw~~~ 374 (380)
.+...+..++|||||++|+....+ +.|.+|++.
T Consensus 398 -------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 398 -------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred -------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 122346789999999998876543 569999874
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.4e-22 Score=176.95 Aligned_cols=270 Identities=11% Similarity=0.096 Sum_probs=188.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeecccCC--CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCC----c
Q psy6984 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK--DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGH----S 149 (380)
Q Consensus 77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~----~ 149 (380)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+......+..++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877653221 478899999998764 55667899999987765554443332 1
Q ss_pred CcEEEEEEccCCCCCEEEEEe------------CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAG------------WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA 217 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 217 (380)
..+.+++|+|+++ .++++. .++.|.+||+.+.+....... ...+..++|+|+|++++++ ++.|
T Consensus 82 ~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 2456789999865 455553 579999999988776655543 3457788999999988887 6889
Q ss_pred EEEECCCCcEEEEEEecCceEEEEeecCcccceeeee--------eeeeccc----------cceEEEEcCCceee-eee
Q psy6984 218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD--------ISRTLQK----------SNLILYPINHGKME-TPF 278 (380)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~-~~~ 278 (380)
.+||+.+++....+........+.|+|++........ ....... ..+.+|+..+++.. ..+
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 9999999987766654332223467777654321110 0000000 14678888877654 223
Q ss_pred eccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984 279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT 358 (380)
Q Consensus 279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 358 (380)
..+...+.+++|+|++++++++ ++.|++||...+.....+.. ...+.+++|+|||++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------------------PHSYYSVNVSTDGST 293 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------------------SSCCCEEEECTTSCE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---------------------CCceeeEEECCCCCE
Confidence 3344567789999999999987 78999998754433221110 112457899999999
Q ss_pred EEEEeeCCeEEEEEee
Q psy6984 359 LFAGYSDNTIRVWQVS 374 (380)
Q Consensus 359 l~~g~~dg~v~iw~~~ 374 (380)
|++++.++.|++||+.
T Consensus 294 l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 294 VWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEESBSSEEEEEETT
T ss_pred EEEEcCCCcEEEEECc
Confidence 9988899999999975
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.4e-22 Score=175.29 Aligned_cols=283 Identities=11% Similarity=0.091 Sum_probs=189.2
Q ss_pred EEccCCCE-EEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcce-EEEeeCC
Q psy6984 71 VLSSDGNY-ALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCK-FTIVEDG 147 (380)
Q Consensus 71 ~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~-~~~~~~~ 147 (380)
.|.+++++ +++.+.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||..+... ..... .
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-E 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-E
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-c
Confidence 45555555 6778889999999999999888877666667 9999999997776665 88999999876654 33332 3
Q ss_pred CcCcEEEEEEccCCCCCEEEEEeCC-C--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCCc-EEEEEC
Q psy6984 148 HSDWVSCVRFSPNHQNPIIVSAGWD-R--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDMN-AMLWDL 222 (380)
Q Consensus 148 ~~~~v~~~~~~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~-i~i~d~ 222 (380)
+.....+++|+|+++ +++++..+ + .|++||+.+.+.......+ ..+..++|+|+|++++ +...++. +.+|++
T Consensus 82 ~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 344444489999865 45544444 3 8999999988776655543 4568999999998555 4455688 999998
Q ss_pred CCCcEE-----EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee---eeeeeccccceeEEEEeecC
Q psy6984 223 NDGKHL-----HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM---ETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 223 ~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~ 294 (380)
.....+ ..+.....+..++|+|++.+..+. ....+.+.+|+...++. ...+. ....+..++|+|+|
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-----~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg 232 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-----NLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDG 232 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-----ETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTS
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEE-----eCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCC
Confidence 754332 222334567899999998753222 22356788999887775 33332 34567789999999
Q ss_pred CEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEE
Q psy6984 295 RQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQ 372 (380)
Q Consensus 295 ~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~ 372 (380)
++|+.++ .++.|.+||..++....+. ......... .........++|+|||++|++++ .++.|.+|+
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVK---------SFGHGLLID--PRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEE---------EEECCCCCC--CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeec---------ccccccccC--CCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 9766554 5788999987654332111 110000000 00001114589999999987655 567999999
Q ss_pred eee
Q psy6984 373 VSV 375 (380)
Q Consensus 373 ~~~ 375 (380)
+..
T Consensus 302 ~~~ 304 (331)
T 3u4y_A 302 ISG 304 (331)
T ss_dssp TTS
T ss_pred ecC
Confidence 853
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=6.6e-24 Score=204.77 Aligned_cols=287 Identities=14% Similarity=0.078 Sum_probs=193.8
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC---CeEEEEEeCCCCEEEEEeCC---------CcEEEEe
Q psy6984 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSVAFSVDNRQIVSSSRD---------KTIKLWN 134 (380)
Q Consensus 67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~s~~~d---------~~v~iwd 134 (380)
+..++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||+++++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 567899999997776 7899999999999988877777664 48999999999999999875 6788999
Q ss_pred CCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccc------------------
Q psy6984 135 TLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGY------------------ 195 (380)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~------------------ 195 (380)
+.++...... ...+...+..++|+|+++. |+.++. +.|++||+.+++.......+...
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~--la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQ--LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTC--EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCceEeccCCccccccccccEECCCCCE--EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 8766542221 1234445788999999864 555553 79999999887655444433322
Q ss_pred eEEEEEcCCCCEEEEEcCCC----------------------------------cEEEEECCCCcEEEEEEe-------c
Q psy6984 196 LNTVTVSPDGSLCASGGKDM----------------------------------NAMLWDLNDGKHLHTLVH-------N 234 (380)
Q Consensus 196 i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~-------~ 234 (380)
+.+++|+|||++|++++.|+ .|++||+.+++....+.. .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 27899999999999887553 799999988875444432 4
Q ss_pred CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-cce----eEEEEeecCCEEEE--eeCCC---
Q psy6984 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-RDV----LSVAFSVDNRQIVS--SSRDK--- 304 (380)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v----~~~~~s~~~~~l~s--~~~dg--- 304 (380)
..+..++|+|++.+..... .+......+++|+..+++....+..+. ..+ ..++|+|||+.|+. +..|+
T Consensus 255 ~~~~~~~~SpDg~~l~~~~--~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWL--NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp EEEEEEEESSSSEEEEEEE--ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ceeEEEEEeCCCeEEEEEE--cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 5688999999987542221 112234567889988877554433322 222 37899999997775 45677
Q ss_pred -c--EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceE-EEEEecCCCEEEEEeeC---CeEEEEEeeee
Q psy6984 305 -T--IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL-SLAWSTDGQTLFAGYSD---NTIRVWQVSVT 376 (380)
Q Consensus 305 -~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~g~~d---g~v~iw~~~~~ 376 (380)
. |.+|+...+.. ......+ ......+. .++|||||+.|+..+.+ +.+++|++...
T Consensus 333 ~~~~l~~~d~~~~~~--------~~~~~~l---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 333 KFYHITVSSSQPNSS--------NDNIQSI---------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CEEEEEEECSSCCSS--------SCCCCBS---------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ceeEEEEEeccCCCC--------ccceeEe---------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 4 44554211110 0000000 00111233 36899999999765544 78999998643
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.7e-23 Score=177.05 Aligned_cols=257 Identities=12% Similarity=0.057 Sum_probs=175.7
Q ss_pred EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCcCcEEEEEEcc
Q psy6984 81 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSP 159 (380)
Q Consensus 81 s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~ 159 (380)
.++.|+.|++||+.+++.. .+..|...+.+++|+|+++++++++ ++.|.+||+.+ ..........+...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3567899999999988766 4556888999999999999999987 78999999877 5544333322346688899999
Q ss_pred CCCCCEEEEEe--CCCeEEEE--eCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEEC--CCCcEEEEEE
Q psy6984 160 NHQNPIIVSAG--WDRMVKVW--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDL--NDGKHLHTLV 232 (380)
Q Consensus 160 ~~~~~~l~s~~--~d~~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~~~~~ 232 (380)
+++ .|++++ .++..++| ++.+.... .... ...+..++|+|++++++ +++.++.+.+|++ ..++......
T Consensus 95 dg~--~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 95 DGA--LYAISDKVEFGKSAIYLLPSTGGTPR-LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp TSS--EEEEEECTTTSSCEEEEEETTCCCCE-ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred CCC--EEEEEEeCCCCcceEEEEECCCCceE-Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 865 566666 33445554 55544432 2222 33488899999999877 7788998888885 4455544445
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEEEEeecCCEEEEeeCC--------
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD-------- 303 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------- 303 (380)
+...+..++|+|++....... ..+....+|.+. .+.....+..+...+..++|+|++++|++++.+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNS-----SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEE-----CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CCCccccceECCCCCEEEEEe-----cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 677899999999987533221 123456666654 333344455556678899999999999988766
Q ss_pred ---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984 304 ---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN 366 (380)
Q Consensus 304 ---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg 366 (380)
+.|++|+...+....+.. . ..+...+..++|+|||+.|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~---------~---------~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFD---------L---------FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEE---------E---------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeec---------c---------CCCCcccccceECCCCCEEEEEEecc
Confidence 468889865433221111 0 01223355688999999998877654
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.2e-23 Score=176.68 Aligned_cols=259 Identities=14% Similarity=0.084 Sum_probs=184.0
Q ss_pred EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC-Cceeeeeccc-CCCeEE
Q psy6984 34 SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-GKTTRRFEDH-TKDVLS 111 (380)
Q Consensus 34 t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~h-~~~v~~ 111 (380)
+.+.|++|++||+.... ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTE------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCc------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence 45678999999986432 223456788899999999999999987 78999999998 8777666555 367889
Q ss_pred EEEeCCCCEEEEEe--CCCcEEEEeC--CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC--Ccee
Q psy6984 112 VAFSVDNRQIVSSS--RDKTIKLWNT--LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT--NCKL 185 (380)
Q Consensus 112 ~~~~~~~~~~~s~~--~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~ 185 (380)
++|+|+++.+++++ .++..++|.. ..... ..+. +...+.+++|+|+++. ++++++.++.+++|++. +.+
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~- 164 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--KNLPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV- 164 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--SSSSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC-
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--cCCCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc-
Confidence 99999999999998 4455666654 33322 2222 2234888999998753 44478889999999863 333
Q ss_pred eEeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECC-CCcEEEEE-EecCceEEEEeecCcccceeeeeeeee----
Q psy6984 186 KINHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLN-DGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRT---- 258 (380)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~---- 258 (380)
......+...+.++.|+|+|++++.++ .++.+.+|++. .+..+..+ .+...+..++|+|++.+..........
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 334556677899999999999877665 58899999875 33334444 355678889999998764433211000
Q ss_pred -ccccceEEEEcCCceee--eeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984 259 -LQKSNLILYPINHGKME--TPFFSLFRDVLSVAFSVDNRQIVSSSRDK 304 (380)
Q Consensus 259 -~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 304 (380)
.....+++|+...++.. ..+..+...+.+++|+|++++|++++.|.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 02256888998877543 23345667888999999999999887653
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.3e-22 Score=192.40 Aligned_cols=284 Identities=11% Similarity=0.094 Sum_probs=195.7
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC-
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA- 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~- 95 (380)
..|.+++|+|+ ..++++ . ++.+++||+.... ...+..+...+..++|+|||++|+.+ .|+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~-~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~ 151 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-T-QGGLVGFDMLARK------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL 151 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-E-TTEEEEEETTTTE------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred cCceeEEECCC-CeEEEE-E-CCEEEEEECCCCc------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence 56999999998 444444 3 5999999986432 12234455668889999999999985 679999999988
Q ss_pred ----CceeeeecccCCC--------------eEEEEEeCCCCEEEEEe--------------------------------
Q psy6984 96 ----GKTTRRFEDHTKD--------------VLSVAFSVDNRQIVSSS-------------------------------- 125 (380)
Q Consensus 96 ----~~~~~~~~~h~~~--------------v~~~~~~~~~~~~~s~~-------------------------------- 125 (380)
++.......+... +.+++|+|||++|++++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 7766544444333 47899999999999987
Q ss_pred -CCCcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCc-eeeEeee-CCcc--
Q psy6984 126 -RDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNC-KLKINHS-GHTG-- 194 (380)
Q Consensus 126 -~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~-~~~~~~~-~~~~-- 194 (380)
.+..|.+||+.++....... ..+...+.+++|+|+++ .|++++.++ .|++||+.++ ....... .+..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN--ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS--EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC--EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 45679999987665433322 24667799999999875 566665565 8999999887 4332221 1222
Q ss_pred -ceEEEEEcC--CCCEEEEEcCCCcEEEEECC-CCcEEEEEE-ecCceEE-EEeecCcccceeeeeeeeeccccceEEEE
Q psy6984 195 -YLNTVTVSP--DGSLCASGGKDMNAMLWDLN-DGKHLHTLV-HNDIITA-LCFSPNRSFQKIKLDISRTLQKSNLILYP 268 (380)
Q Consensus 195 -~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (380)
.+..+.|+| +|+++++++.|+.+++|++. ++..+..+. +...+.. ++|+|++......... .......++.++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d 388 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-ASPLERHFYCID 388 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-SCTTCBEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-CCCceEEEEEEE
Confidence 246789999 99999999999999999875 555555553 3444655 7999988653322110 000012455666
Q ss_pred cCCceeeeeeeccccceeEEEEeecCCEEEEeeCC----CcEEEEecccce
Q psy6984 269 INHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHC 315 (380)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 315 (380)
..+++.. ...+...+.+++|+|||++++..+.+ +.|++|+...+.
T Consensus 389 ~~~~~~~--~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGKTK--DLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCCCE--ESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCce--eccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6555422 22345668899999999998876443 569999986654
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.4e-21 Score=171.78 Aligned_cols=278 Identities=12% Similarity=0.150 Sum_probs=177.4
Q ss_pred CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC---CCcEEEEECCCCce--eeeecccCCCeEE
Q psy6984 37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW---DKTLRLWDLAAGKT--TRRFEDHTKDVLS 111 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~--~~~~~~h~~~v~~ 111 (380)
.++.+.+|.++...... .......+...+..++|+|||+ |++++. ++.|++|++.+++. +..+..+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~--~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTL--TNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEE--EEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeE--EEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 46678899886532211 1112233445677899999999 655554 68999999977653 3344456778889
Q ss_pred EEEeCCCCEEEEEe-CCCcEEEEeCCCcceE---EEeeC-C-------CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984 112 VAFSVDNRQIVSSS-RDKTIKLWNTLAHCKF---TIVED-G-------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179 (380)
Q Consensus 112 ~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~---~~~~~-~-------~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 179 (380)
++|+|||+++++++ .++.+.+|++...... ..... + ....+.+++|+|+++ ++++...++.|++|+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEE
Confidence 99999999988887 7889999997532111 11111 1 123488899999876 677777789999999
Q ss_pred CC-CceeeE--eeeCC-ccceEEEEEcCCCCEEEE-EcCCCcEEEEECCC--CcEEEEEEecCceEEEEeecCcccceee
Q psy6984 180 LT-NCKLKI--NHSGH-TGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLND--GKHLHTLVHNDIITALCFSPNRSFQKIK 252 (380)
Q Consensus 180 ~~-~~~~~~--~~~~~-~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 252 (380)
+. ++++.. ....+ ...+..++|+|+|+++++ ...++.+.+|++.. ++.. ... .+...+..
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~-~~~------~~~~~~~~------ 235 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT-QLG------IVKTIPAD------ 235 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE-EEE------EEESSCTT------
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE-Eee------eeeecCCC------
Confidence 98 443322 11222 235778999999996554 66789999998764 3211 100 00000000
Q ss_pred eeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE-EEeeCCCcEEEEecccceeeeEeecccceEEEee
Q psy6984 253 LDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331 (380)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 331 (380)
......+..++|+|||++| ++...++.|.+|++....... .+..+
T Consensus 236 --------------------------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~--------~~~~~ 281 (347)
T 3hfq_A 236 --------------------------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT--------LIQQI 281 (347)
T ss_dssp --------------------------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE--------EEEEE
T ss_pred --------------------------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE--------EeEEE
Confidence 0001235679999999987 555668999999874321111 11111
Q ss_pred CcccccccCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEeee
Q psy6984 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVSV 375 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~~ 375 (380)
. .+...+..++|+|||++|++++. ++.|.+|++..
T Consensus 282 ~---------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 282 S---------TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp E---------CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred e---------cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 1 11223457999999999888775 58999997753
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1e-22 Score=191.56 Aligned_cols=271 Identities=15% Similarity=0.097 Sum_probs=189.9
Q ss_pred CcceEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCC-
Q psy6984 64 SHFISDIVLSSDGNYALSGSW-DKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLA- 137 (380)
Q Consensus 64 ~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~- 137 (380)
...|++++|+|||++||.++. ||.+.||++.+++..+ +..|. ..+..++|+|| +.+++++. +...++|....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 446999999999999999887 9999999986665544 44444 68999999999 77777765 45567765432
Q ss_pred -cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC--
Q psy6984 138 -HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-- 214 (380)
Q Consensus 138 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 214 (380)
......+.. .......+|+|+++..+++++..+ .+.+||+.+++.......+. .+++|+|||+++++++.+
T Consensus 99 ~~g~~~~l~~--~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 99 RPGEEQRLEA--VKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp STTCCEECTT--SCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred CCCccccccC--CCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 212122221 223446788898876455555544 45599998876554433222 788999999999988777
Q ss_pred --CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE---
Q psy6984 215 --MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA--- 289 (380)
Q Consensus 215 --~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 289 (380)
..|++||+.+++......+...+..++|+|+++.... ........+++|+..+++.. .+..+...+..++
T Consensus 173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~----~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG----LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE----EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE----ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 7899999988876654456777899999999976441 11111236888998888776 5555555566666
Q ss_pred -----EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee
Q psy6984 290 -----FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS 364 (380)
Q Consensus 290 -----~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~ 364 (380)
|+|||..+++++.|+++++|++ +... . .....+.+++|+ ||+++++++.
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~-----------~------------~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID--GERV-----------E------------APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET--TEEE-----------C------------CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE--CCee-----------c------------cCCCceEEEEec-CCEEEEEEcC
Confidence 9999988999999999999986 2111 0 001246688999 9999998887
Q ss_pred CCe-EEEEEe
Q psy6984 365 DNT-IRVWQV 373 (380)
Q Consensus 365 dg~-v~iw~~ 373 (380)
+.. -++|.+
T Consensus 302 ~~~p~~l~~~ 311 (582)
T 3o4h_A 302 LSTPPRIVSL 311 (582)
T ss_dssp TTEEEEEEEE
T ss_pred CCCCCeEEEE
Confidence 754 344433
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.5e-20 Score=165.23 Aligned_cols=272 Identities=10% Similarity=0.085 Sum_probs=198.6
Q ss_pred ccceEEEEeCCCCCCeEEEeeC-------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCc
Q psy6984 16 NGWVTQIATNPKFPDTILSCSR-------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKT 87 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~-------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~ 87 (380)
...+..++++|+ ++++++++. ++.|.+||........ .+. ....+..++++|+|++++.+ ..++.
T Consensus 40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-----AIH-NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEE-----EEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-----EEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence 456888999997 566666653 5789999976543211 111 12346789999999966554 55799
Q ss_pred EEEEECCCCceeeeecccCCC---------eEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984 88 LRLWDLAAGKTTRRFEDHTKD---------VLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156 (380)
Q Consensus 88 i~vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 156 (380)
|.+||..+++....+..+... +.+++|+|+++.++++. .++.|.+||..+......+. .+...+.+++
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~ 191 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLA 191 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCE
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEE
Confidence 999999999888777654322 68899999999887766 47889999987765554443 2344467899
Q ss_pred EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----CccceEEEEEcCCCCEEEEEcC-CCcEEEEECCCCcEEEEE
Q psy6984 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 157 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~ 231 (380)
|+|+++ .+++++.++.|.+||+.+.+....... +...+..++++|+|+++++++. ++.|.+||..+++.+..+
T Consensus 192 ~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 192 LDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999765 577778899999999998877655443 4556888999999997666554 599999999999988777
Q ss_pred EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK 304 (380)
Q Consensus 232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 304 (380)
..... ..++|+|++.+..+. ...++.+.+|+..+++....+. ....+.+++|+|+|++|+.+..++
T Consensus 270 ~~~~~-~~~~~s~dg~~l~v~-----~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 270 AAPES-LAVLFNPARNEAYVT-----HRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ECSSC-CCEEEETTTTEEEEE-----ETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred EcCCC-ceEEECCCCCEEEEE-----ECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 65543 568899988643221 2245778999998887665443 334678999999999777666553
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=5e-21 Score=168.05 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=176.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCC
Q psy6984 70 IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDG 147 (380)
Q Consensus 70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~ 147 (380)
++++++++++++++.++.|++||+.+++....+..+. ..+..++|+|+++.++ +...++.|.+||+.+......+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4567888899999999999999999998887776443 2577899999998665 5557899999998776555444333
Q ss_pred C-----cCcEEEEEEccCCCCCEEEEEeCC------------CeEEEEeCCCcee---eEeeeCCccceEEEEEcCCCCE
Q psy6984 148 H-----SDWVSCVRFSPNHQNPIIVSAGWD------------RMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPDGSL 207 (380)
Q Consensus 148 ~-----~~~v~~~~~~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 207 (380)
+ ...+.+++|+|+++ .+++++.+ +.|.+||+.+.+. ..... +...+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 2 22356789999865 56666544 8999999987432 22222 334588899999999
Q ss_pred EEEEcCCCcEEEEECCCCcEEEEEEecC-------------------------ceEEEEeecCcccceeeeeeeeecccc
Q psy6984 208 CASGGKDMNAMLWDLNDGKHLHTLVHND-------------------------IITALCFSPNRSFQKIKLDISRTLQKS 262 (380)
Q Consensus 208 l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (380)
+++++. .|.+||+.+++.+..+.... ....+++++++........ ...
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~ 233 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD-----LLY 233 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE-----EEE
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc-----cce
Confidence 555544 49999999988776654332 2223333332211000000 001
Q ss_pred ceEEEEcCCceeee-eeeccccceeEEEEee-cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccC
Q psy6984 263 NLILYPINHGKMET-PFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST 340 (380)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (380)
.+..++...++... .+......+..++|+| ++++++++ ++.|++||+.++.....+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------------------ 293 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------------------ 293 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------------------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------------------
Confidence 11123333333221 1122334577899999 99999988 88999998755433222110
Q ss_pred CCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 341 KADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 341 ~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
...+..++|+|||++|++++.++.|++||+.
T Consensus 294 ---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 294 ---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp ---SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred ---CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 1123478999999999888889999999975
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=4.9e-21 Score=167.14 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=189.2
Q ss_pred CeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCc-ceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecc-c
Q psy6984 30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSH-FISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFED-H 105 (380)
Q Consensus 30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~-h 105 (380)
+++++++.+++|++||+...... ..+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-----KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-----EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-----EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence 47899999999999997643211 1121 2222 367899999998765 555678999999999888776643 1
Q ss_pred ----CCCeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984 106 ----TKDVLSVAFSVDNRQIVSSS------------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 106 ----~~~v~~~~~~~~~~~~~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 169 (380)
...+.+++|+|+++.++++. .++.|.+||..+......+.. ...+.+++|+|+++. ++++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~--l~~~ 152 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSK--LYGL 152 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSC--EEEE
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCE--EEEe
Confidence 22567899999999998886 679999999876655444432 234677899998753 4444
Q ss_pred eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC-C-----------------------cEEEEECCCC
Q psy6984 170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-M-----------------------NAMLWDLNDG 225 (380)
Q Consensus 170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-----------------------~i~i~d~~~~ 225 (380)
++.|.+||+.+.+.......+.. ...+.++|+++.++..+.. + .|.+||+.++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred --CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 68999999998877655543321 1123678998876554433 2 4689999988
Q ss_pred cEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984 226 KHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302 (380)
Q Consensus 226 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 302 (380)
+.. .. .+...+..++|+|++.+.... ++.+.+|+..+++....+. ....+.+++|+|++++|++++.
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESB
T ss_pred Cce-EeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcC
Confidence 765 22 234567789999998764332 3678899998877654433 3346789999999999999889
Q ss_pred CCcEEEEecccceee
Q psy6984 303 DKTIKLWNTLAHCKF 317 (380)
Q Consensus 303 dg~v~iw~~~~~~~~ 317 (380)
++.|++||+.++..+
T Consensus 300 ~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 300 LGDLAAYDAETLEKK 314 (337)
T ss_dssp SSEEEEEETTTCCEE
T ss_pred CCcEEEEECcCCcEE
Confidence 999999987655443
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.8e-22 Score=192.35 Aligned_cols=323 Identities=12% Similarity=0.090 Sum_probs=205.7
Q ss_pred EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccCCCEEEEEeC---------CCcE
Q psy6984 21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSDGNYALSGSW---------DKTL 88 (380)
Q Consensus 21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i 88 (380)
++.|+|+ +. ++..+.|++|++|++...... ..+.+|.. .+.+++|||||++|++++. ++.|
T Consensus 20 ~~~~s~d-g~-~~~~~~d~~i~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 20 FPNWISG-QE-YLHQSADNNIVLYNIETGQSY-----TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCEESSS-SE-EEEECTTSCEEEEESSSCCEE-----EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCC-Ce-EEEEcCCCCEEEEEcCCCcEE-----EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 6789987 44 444556999999998754321 11223322 3889999999999998876 7899
Q ss_pred EEEECCCCcee--eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE--------------
Q psy6984 89 RLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV-------------- 152 (380)
Q Consensus 89 ~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-------------- 152 (380)
++||+.+++.+ ..+ ...+..++|+|||+.|+.+. ++.|++|++.++........++...+
T Consensus 93 ~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 93 YIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp EEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred EEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecc
Confidence 99999988763 222 24688899999999999886 77999999876554433333333322
Q ss_pred ---EEEEEccCCCCCEEEEEeCCC----------------------------------eEEEEeCCCceee----E----
Q psy6984 153 ---SCVRFSPNHQNPIIVSAGWDR----------------------------------MVKVWNLTNCKLK----I---- 187 (380)
Q Consensus 153 ---~~~~~~~~~~~~~l~s~~~d~----------------------------------~v~iwd~~~~~~~----~---- 187 (380)
.+++|+|+++ .|++++.|. .|++||+.+.+.. .
T Consensus 169 ~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 169 ATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp CSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 4799999876 566655442 7889999886542 1
Q ss_pred eeeCCccceEEEEEcCCCCEEEEEcCC----CcEEEEE----CCCCcEEEEE-----EecCceE-----EEEeecCcccc
Q psy6984 188 NHSGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWD----LNDGKHLHTL-----VHNDIIT-----ALCFSPNRSFQ 249 (380)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~~ 249 (380)
.+.+|...+..++|+||++++++.... ..|.+|| ..+++..... .+...+. .+.|+|++...
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 123577789999999998877764332 3488899 7766543332 2334444 77899998743
Q ss_pred eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC-----CcEEEEecccceeeeEeeccc
Q psy6984 250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFTIVDLET 324 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~ 324 (380)
.+.. ........+++++...++ ...+......+..+.++ +++.++..+.+ +.+++|.+.. .+
T Consensus 327 ~~~~--~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~---------~~ 393 (719)
T 1z68_A 327 YKIF--SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI---------GS 393 (719)
T ss_dssp EEEE--ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC---------SS
T ss_pred EEEE--EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC---------CC
Confidence 3211 111123346667765554 23344444557777777 88877766654 8899997522 11
Q ss_pred ce-EEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-EeeC--CeEEEEEee
Q psy6984 325 KK-MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-GYSD--NTIRVWQVS 374 (380)
Q Consensus 325 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-g~~d--g~v~iw~~~ 374 (380)
.. ....+... ...+...+..+.|+|||++++. ++.. ..+.+|++.
T Consensus 394 g~~~~~~l~~~-----~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 394 YPPSKKCVTCH-----LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp SSCCEEESSTT-----TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCCCceeccCc-----cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 10 00111100 0112334567899999998774 4333 357777763
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=6.7e-21 Score=171.92 Aligned_cols=243 Identities=11% Similarity=0.108 Sum_probs=166.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCC----------ceee-----eecccCCCeEEEEEeCCCCEEE----EEeC
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAG----------KTTR-----RFEDHTKDVLSVAFSVDNRQIV----SSSR 126 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~-----~~~~h~~~v~~~~~~~~~~~~~----s~~~ 126 (380)
.++.+++++++.++++++.|+ +++|+...- .... ....+...|.+++|+|++++|+ +++.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 478899999999999999998 889875310 0111 1123556799999999999999 7889
Q ss_pred CCcEEEEeCCCc--------ce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccce
Q psy6984 127 DKTIKLWNTLAH--------CK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL 196 (380)
Q Consensus 127 d~~v~iwd~~~~--------~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i 196 (380)
|+.|++||+... .. ......+|...|.+++|+|+.. .+|++++.|++|++||+++........+|...+
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 999999997543 11 1233456889999999999743 489999999999999999887666667788999
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-e-------cCceEEEEeecCcccceeeeeeeee-ccccceEEE
Q psy6984 197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-H-------NDIITALCFSPNRSFQKIKLDISRT-LQKSNLILY 267 (380)
Q Consensus 197 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 267 (380)
.+++|+|+|++|++|+.|+.|++||++ ++....+. + ...+.+++|+++..+.......... .....+.+|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 55444442 1 1278899999876554322111000 112346777
Q ss_pred EcCCceee-----eeee-------ccccceeEEEEeecCCEEEEeeC-CCcEEEEec
Q psy6984 268 PINHGKME-----TPFF-------SLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNT 311 (380)
Q Consensus 268 ~~~~~~~~-----~~~~-------~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~ 311 (380)
++...+.. ..+. ....+...+.+-++.++++.++. ...|.+...
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 275 LLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp ECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 77543211 1111 11112233444477777665554 455666653
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=3.9e-20 Score=163.39 Aligned_cols=279 Identities=11% Similarity=0.131 Sum_probs=176.0
Q ss_pred eEEEe----eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC----CcEEEEECCC--Cce--
Q psy6984 31 TILSC----SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD----KTLRLWDLAA--GKT-- 98 (380)
Q Consensus 31 ~l~t~----~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~--~~~-- 98 (380)
+++.| +.++.|.+|+++........ .... +...+..++|+|||++|++++.+ +.|.+|++.. ++.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~-~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLP-LSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEE-EEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEE-eecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 44555 34678999988643222111 1112 55667789999999999999886 7999998865 433
Q ss_pred eeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceE----EE-eeC--------CCcCcEEEEEEccCCCCC
Q psy6984 99 TRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKF----TI-VED--------GHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~----~~-~~~--------~~~~~v~~~~~~~~~~~~ 164 (380)
+.....+......+++ +++++++++ .++.+.+|++...... .. ... .+...+.+++|+|+++.
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~- 168 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY- 168 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-
Confidence 2233334556777777 788777766 6789999997542211 11 111 11234688999998753
Q ss_pred EEEEEeCCCeEEEEeCCCce-------ee------EeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNCK-------LK------INHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHT 230 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~-------~~------~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~ 230 (380)
++++...++.|++|++.... +. .....+...+..++|+|+|+++++++ .++.|.+||+.+++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 44555568899999887533 21 11223345678899999999877666 689999999876532111
Q ss_pred EEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC--CCcEEE
Q psy6984 231 LVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR--DKTIKL 308 (380)
Q Consensus 231 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~i 308 (380)
.. +...+ .+......++|+|||++|+++.. ++.|.+
T Consensus 249 ~~-------~~~~~-----------------------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 249 QT-------VAADT-----------------------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp EE-------EESCS-----------------------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred EE-------EecCC-----------------------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 00 00000 01122457899999999876665 489999
Q ss_pred Eeccc-ceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEeee
Q psy6984 309 WNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVSV 375 (380)
Q Consensus 309 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~~ 375 (380)
|++.. ..+.. .+..... ...+..++|+|||++|++++ .++.|.+|++..
T Consensus 287 ~~~~~~~g~~~--------~~~~~~~----------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 287 FKVDETNGTLT--------KVGYQLT----------GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEECTTTCCEE--------EEEEEEC----------SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EEEcCCCCcEE--------EeeEecC----------CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 98641 11111 1111110 12345789999999998877 679999988763
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=6.3e-20 Score=160.51 Aligned_cols=271 Identities=13% Similarity=0.182 Sum_probs=175.9
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCC-CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CCcEEEE
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRD-NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DKTLRLW 91 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~d-g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vw 91 (380)
.|...+..++++|+ +++|++++.+ +.|++|+++....... ....+..+. .+..++|+|++++|++++. ++.|.+|
T Consensus 35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCcee-eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 46778999999998 6777777765 9999999873221111 112223333 6789999999998877765 7889999
Q ss_pred ECCC---CceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCC-cceEE----EeeCCCcCcEEEEEEccCCC
Q psy6984 92 DLAA---GKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLA-HCKFT----IVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 92 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~ 162 (380)
|+.+ .+....+.. ...+.+++|+|+++.+++++ .++.|.+||+.. +.... .........+.+++|+|+++
T Consensus 112 d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp EEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred ECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence 9943 333444433 34588899999999888877 899999999875 32221 12222334678899999865
Q ss_pred CCEEEEEeCCCeEEEEeCCC--ceee--Eeee----CC--ccceEEEEEcCCCCEEE-EEcCCCcEEEEECC--CC--cE
Q psy6984 163 NPIIVSAGWDRMVKVWNLTN--CKLK--INHS----GH--TGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLN--DG--KH 227 (380)
Q Consensus 163 ~~~l~s~~~d~~v~iwd~~~--~~~~--~~~~----~~--~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~--~~ 227 (380)
. +++++..++.|++|++.. ++.. .... ++ ...+..++|+|+|++++ ++..++.|.+||+. .+ +.
T Consensus 191 ~-l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 191 Y-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp E-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred E-EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 2 445556889999999953 3321 1111 11 23566899999998776 55579999999998 32 34
Q ss_pred EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee-eeeccccceeEEEEeecC
Q psy6984 228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET-PFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~v~~~~~s~~~ 294 (380)
+..+.....+..++|+|++.+.... ...++.+.+|.++ +++... ..........+++|.|+.
T Consensus 270 ~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 270 EGFQPTETQPRGFNVDHSGKYLIAA-----GQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEECSSSCCCEEECTTSSEEEEE-----CTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred eeeecCCCccceEEECCCCCEEEEe-----cCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence 4444444558889999988653322 1234667777543 444321 111222334556666554
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=6.7e-20 Score=163.42 Aligned_cols=310 Identities=10% Similarity=0.012 Sum_probs=189.9
Q ss_pred eEEeEEecCcccceEE-----EEeCCCCCCeEEEeeC-CCe--EEEeecCCCCCCcccccccccCCCcceEEEEEccCCC
Q psy6984 6 LQLRGTLNGHNGWVTQ-----IATNPKFPDTILSCSR-DNT--LIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN 77 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~-----i~~~~~~~~~l~t~~~-dg~--v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 77 (380)
......|..|.+.... ..|+|+ +++|+.++. +|. |.+|++.... ......++...+..+.|+|||+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSS
T ss_pred CcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCC
Confidence 3445567777766665 789998 677777776 774 6666654321 1112334544555678999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEE--EeCCCCEEEEE----------------------eCCCcEEEE
Q psy6984 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSS----------------------SRDKTIKLW 133 (380)
Q Consensus 78 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~s~----------------------~~d~~v~iw 133 (380)
+|+.++.++.|++||+.+++....+..+...+.... ++|++..++.. ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999999999887776665555444333 48999988743 244678899
Q ss_pred eCCCcceEEEeeCCCcCcEEEEEEcc-CCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCc-cceEEEEEcCCC
Q psy6984 134 NTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHT-GYLNTVTVSPDG 205 (380)
Q Consensus 134 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~ 205 (380)
|+.++...... .+...+..++|+| +++. |+.... ...|.++|+...........+. ..+..+.|+|||
T Consensus 174 d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 174 DLKTGESTVIL--QENQWLGHPIYRPYDDST--VAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp ETTTCCEEEEE--EESSCEEEEEEETTEEEE--EEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred ECCCCceEEee--cCCccccccEECCCCCCE--EEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence 98776544433 2345688999999 7653 443332 3378888887654433222222 357788999999
Q ss_pred CEEEEEcC-C----CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec
Q psy6984 206 SLCASGGK-D----MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS 280 (380)
Q Consensus 206 ~~l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (380)
+.|+..+. + ..|++||+.+++......... .....++
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~------------------------------------- 291 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSN------------------------------------- 291 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEEC-------------------------------------
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeec-------------------------------------
Confidence 97765433 2 239999998876432211111 0000000
Q ss_pred cccceeEEEEeecCCEEEEe---------eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984 281 LFRDVLSVAFSVDNRQIVSS---------SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351 (380)
Q Consensus 281 ~~~~v~~~~~s~~~~~l~s~---------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (380)
...++|+|||+.|+.. ..+..|++|+...+....+..... .... ........+..++
T Consensus 292 ----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------~~~~---~~~~~~~~~~~~~ 357 (388)
T 3pe7_A 292 ----YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT-------SWKV---FEGDRQVTHPHPS 357 (388)
T ss_dssp ----TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC-------CCCC---BTTBSSTTCCCCE
T ss_pred ----CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC-------cccc---cccccccCCCCcc
Confidence 0123689999887753 456689999876543322211100 0000 0000011245678
Q ss_pred EecCCCEEEEEe-eCCeEEEEEeeeec
Q psy6984 352 WSTDGQTLFAGY-SDNTIRVWQVSVTS 377 (380)
Q Consensus 352 ~s~dg~~l~~g~-~dg~v~iw~~~~~~ 377 (380)
|||||+.|+..+ .+|...||.+.+..
T Consensus 358 ~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 358 FTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred CCCCCCEEEEEecCCCceeEEEEECCh
Confidence 999999888655 68889999887654
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.9e-21 Score=175.50 Aligned_cols=204 Identities=14% Similarity=0.070 Sum_probs=150.3
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-------cc---cccccccCCCcceEEEEEccCCCEEE----E
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-------YG---VPQKRLKGHSHFISDIVLSSDGNYAL----S 81 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-------~~---~~~~~~~~h~~~v~~~~~~~~~~~l~----s 81 (380)
...++.+++++. ..++++++.|+ +++|+....... .. ........+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345888889887 56888888887 888875421000 00 00111123556799999999999999 7
Q ss_pred EeCCCcEEEEECCCC--------ce---eeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCc
Q psy6984 82 GSWDKTLRLWDLAAG--------KT---TRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS 149 (380)
Q Consensus 82 ~~~d~~i~vwd~~~~--------~~---~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 149 (380)
|+.|+.|+|||+.++ +. ...+.+|...|.+++|+|+ +..+++++.|++|++||+...... ....+|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCC
Confidence 889999999998654 11 3455679999999999998 789999999999999998776443 2334678
Q ss_pred CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-------CccceEEEEEcCCCCEEEE-EcCCC------
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-------HTGYLNTVTVSPDGSLCAS-GGKDM------ 215 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~-~~~d~------ 215 (380)
..|.+++|+|++. +|++|+.|+.|++||++ .+....... |...+.++.|++++.++++ ...||
T Consensus 193 ~~v~~v~wspdg~--~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 193 VAVTSVCWSPKGK--QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GCEEEEEECTTSS--CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CceeEEEEcCCCC--EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 8899999999865 68999999999999998 333333322 3347999999998887754 33343
Q ss_pred cEEEEECCCC
Q psy6984 216 NAMLWDLNDG 225 (380)
Q Consensus 216 ~i~i~d~~~~ 225 (380)
.+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3889998764
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=2e-19 Score=157.90 Aligned_cols=249 Identities=11% Similarity=0.106 Sum_probs=162.3
Q ss_pred cCcccceEEEEeCCCCCCeEEEeeC---CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcE
Q psy6984 13 NGHNGWVTQIATNPKFPDTILSCSR---DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTL 88 (380)
Q Consensus 13 ~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i 88 (380)
..+...+..++++|+ ++ |++++. ++.|.+|++..... .....+..+...+..++|+|||++|++++ .++.|
T Consensus 36 ~~~~~~p~~~a~spd-g~-l~~~~~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DC-LYSVDKEDDEGGIAAWQIDGQTA---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTA 110 (347)
T ss_dssp EEECSCCCCEEECTT-CE-EEEEEEETTEEEEEEEEEETTEE---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred eeccCCcceEEEccC-Ce-EEEEEecCCCceEEEEEecCCcE---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEE
Confidence 345567788999997 45 554443 68999999853221 11222334566788999999999998888 67899
Q ss_pred EEEECCC-Cce--eeeecc---------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE---eeCCCcCcEE
Q psy6984 89 RLWDLAA-GKT--TRRFED---------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---VEDGHSDWVS 153 (380)
Q Consensus 89 ~vwd~~~-~~~--~~~~~~---------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~ 153 (380)
.+|++.. ++. +..+.. +...+.+++|+|+|+.+++...++.+.+|++........ ..........
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9999963 322 222211 122478899999999666677788999999873222211 1222233577
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEeCCC--ceeeE--eeeCCc------cceEEEEEcCCCCEE-EEEcCCCcEEEEEC
Q psy6984 154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTN--CKLKI--NHSGHT------GYLNTVTVSPDGSLC-ASGGKDMNAMLWDL 222 (380)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~--~~~~~~------~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~ 222 (380)
.++|+|+++. ++++...++.|++|++.. ++... ...... ..+..++|+|+|++| ++...++.|.+|++
T Consensus 191 ~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 191 HLVFSPDGQY-AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEECTTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred eEEECCCCCE-EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 8999998752 455567789999999874 43321 222211 358889999999977 55566899999997
Q ss_pred CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984 223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302 (380)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 302 (380)
........+. .+..+...+..++|+|||++|++++.
T Consensus 270 ~~~g~~~~~~--------------------------------------------~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 270 TADGHLTLIQ--------------------------------------------QISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp CGGGCEEEEE--------------------------------------------EEECSSSCCCEEEECTTSSEEEEEET
T ss_pred CCCCcEEEeE--------------------------------------------EEecCCCCcCeEEECCCCCEEEEEEc
Confidence 5321111000 00001123457899999998888776
Q ss_pred -CCcEEEEec
Q psy6984 303 -DKTIKLWNT 311 (380)
Q Consensus 303 -dg~v~iw~~ 311 (380)
++.|.+|++
T Consensus 306 ~~~~v~v~~~ 315 (347)
T 3hfq_A 306 NTDNATLYAR 315 (347)
T ss_dssp TTTEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 489999964
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1e-18 Score=168.75 Aligned_cols=328 Identities=13% Similarity=0.119 Sum_probs=197.9
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc-----ceEEEEEccCCCEEEEEeCC-----
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH-----FISDIVLSSDGNYALSGSWD----- 85 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d----- 85 (380)
.....++.|+|+ +.+++++ ||+|++|++...... ..+.+|.. ....+.|||||++|+.++.+
T Consensus 16 ~~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 16 RLKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccccEECCC-CcEEEEc--CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 345668899998 5677775 899999998755321 11233332 23458899999999998876
Q ss_pred ----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE---------
Q psy6984 86 ----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV--------- 152 (380)
Q Consensus 86 ----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v--------- 152 (380)
+.+.+||+.+++... +..|...+...+|||||+.||.++ ++.|.+|+..++........++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 567799999987554 566778899999999999998885 67899999876554443333433323
Q ss_pred --------EEEEEccCCCCCEEEEEeCC------------------------------------CeEEEEeCCC---ce-
Q psy6984 153 --------SCVRFSPNHQNPIIVSAGWD------------------------------------RMVKVWNLTN---CK- 184 (380)
Q Consensus 153 --------~~~~~~~~~~~~~l~s~~~d------------------------------------~~v~iwd~~~---~~- 184 (380)
..+.|+|+++. |+..+.| ..|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~--la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTF--LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHTSSSSBCEEECTTSSE--EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred cchhcCCCcceEECCCCCE--EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 24889998764 4443211 1588899987 52
Q ss_pred -eeEeee------CCccceEEEEEcCCCCEEEEEc----CCCcEEEEECCCCc----EE--EE---EEecCce-----EE
Q psy6984 185 -LKINHS------GHTGYLNTVTVSPDGSLCASGG----KDMNAMLWDLNDGK----HL--HT---LVHNDII-----TA 239 (380)
Q Consensus 185 -~~~~~~------~~~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~----~~--~~---~~~~~~i-----~~ 239 (380)
...... +|...+..++|+|||+.++... .+..|++||+.+++ .. .. ..+...+ ..
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 112222 3677899999999999666543 23479999998876 11 11 1233333 36
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-C----CCcEEEEecccc
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-R----DKTIKLWNTLAH 314 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~----dg~v~iw~~~~~ 314 (380)
..|+|++....+. .........+++|+...++.. .+......+..+. .+|++.++..+ . .+...+|.+
T Consensus 324 p~fspDG~~l~~~--~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v--- 396 (740)
T 4a5s_A 324 PHFTLDGNSFYKI--ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI--- 396 (740)
T ss_dssp CEECTTSSEEEEE--EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE---
T ss_pred ceEcCCCCEEEEE--EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE---
Confidence 7899998653311 111122345677777655433 3333334455443 35566655433 3 244556543
Q ss_pred eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC---CeEEEEEe
Q psy6984 315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD---NTIRVWQV 373 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d---g~v~iw~~ 373 (380)
++.+......+.... .........+.|||||++++..... ..+.+++.
T Consensus 397 ------~~~g~~~~~~lt~~~-----~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 397 ------QLIDYTKVTCLSCEL-----NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (740)
T ss_dssp ------ETTEEEEEEESSTTT-----STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred ------ECCCCCcceeecccc-----CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence 222221111111100 0112345678999999987643322 24555543
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.7e-19 Score=169.55 Aligned_cols=267 Identities=11% Similarity=0.081 Sum_probs=183.0
Q ss_pred ccceEEEEeCCCCCCeEEEeeC-CCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeC---CCcEEE
Q psy6984 16 NGWVTQIATNPKFPDTILSCSR-DNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSW---DKTLRL 90 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~-dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---d~~i~v 90 (380)
..+|+++.++|+ +++||.++. ||+++||+++... ...+..|. ..+..+.|+|| +.+++++. +....+
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~------~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGE------TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTE------EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCC------cEeeecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence 357999999998 688888876 9999999974321 23344555 57999999999 77887775 454555
Q ss_pred EECCC---CceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 91 WDLAA---GKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 91 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
|.+.. +... .+... ..+...+|+||++. +++.+.++.+.+||+.++....... .+. .+++|+|+++ .+
T Consensus 93 ~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~---~~~~~spDG~--~l 164 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG---FGFVSDIRGD--LI 164 (582)
T ss_dssp EEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS---CEEEEEEETT--EE
T ss_pred EEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC---ceEEECCCCC--EE
Confidence 54432 2222 33322 23446688888863 3344444455699987665444332 222 6789999876 56
Q ss_pred EEEeCC----CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEE-EecCceEE
Q psy6984 167 VSAGWD----RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM--NAMLWDLNDGKHLHTL-VHNDIITA 239 (380)
Q Consensus 167 ~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~-~~~~~i~~ 239 (380)
++++.+ ..|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+ .+...+..
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 766655 78999999887754 4567788899999999999999888888 8999999988876 33 23444555
Q ss_pred EE--------eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc---EEE
Q psy6984 240 LC--------FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT---IKL 308 (380)
Q Consensus 240 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---v~i 308 (380)
++ |+|++.... ....++.+.+|.+ ++... .....+.+++|+ +++.+++++.+.+ +.+
T Consensus 243 ~~~~~~~~~~~spdg~~~~------~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAV------VARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp HCCSEEEEEEECTTSCEEE------EEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred hhhccccceeEcCCCcEEE------EEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 56 999983211 1123566788888 55433 233568899999 9999998887754 666
Q ss_pred Eecc
Q psy6984 309 WNTL 312 (380)
Q Consensus 309 w~~~ 312 (380)
|+..
T Consensus 311 ~d~~ 314 (582)
T 3o4h_A 311 LPSG 314 (582)
T ss_dssp ETTC
T ss_pred EcCC
Confidence 6643
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=5e-19 Score=155.21 Aligned_cols=265 Identities=14% Similarity=0.086 Sum_probs=175.2
Q ss_pred EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEE-EEeCCCcEEEEECCCCcee
Q psy6984 22 IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTT 99 (380)
Q Consensus 22 i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~ 99 (380)
+++.+. +.++++++.+++|.+||+...... ..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++..
T Consensus 5 ~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAG-HEYMIVTNYPNNLHVVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTT-CEEEEEEETTTEEEEEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCC-CEEEEEeCCCCeEEEEECCCCcEE-----EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 345554 578999999999999998643211 1122221 2467899999998765 5556899999999998887
Q ss_pred eeecccC------CCeEEEEEeCCCCEEEEEeCC------------CcEEEEeCCCcc---eEEEeeCCCcCcEEEEEEc
Q psy6984 100 RRFEDHT------KDVLSVAFSVDNRQIVSSSRD------------KTIKLWNTLAHC---KFTIVEDGHSDWVSCVRFS 158 (380)
Q Consensus 100 ~~~~~h~------~~v~~~~~~~~~~~~~s~~~d------------~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~ 158 (380)
..+.... ..+..++|+|||+++++++.+ +.|.+||+.+.. ...... +...+.+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s 156 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAA 156 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEEC
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeEC
Confidence 7665322 237789999999999988865 899999976522 112221 22357789999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc------------------------cceEEEEEcCCCCE-------
Q psy6984 159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT------------------------GYLNTVTVSPDGSL------- 207 (380)
Q Consensus 159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------------------~~i~~~~~~~~~~~------- 207 (380)
|+++ +++ ++ +.|.+||+.+.+.......+. ..+..+++++++..
T Consensus 157 ~dg~--l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 157 DDGS--LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp TTSC--EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCCc--EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 9875 444 43 349999998877655443221 03345666655421
Q ss_pred ----EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984 208 ----CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF 282 (380)
Q Consensus 208 ----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (380)
+.....++.+.+|++ -.....+..++++| ++.+.... .+.+.+|+..+++....+. ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~-~~ 294 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEF--------ADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAAN-LD 294 (349)
T ss_dssp EEEEEEEETTTCCEEEEEE--------EECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEE-CS
T ss_pred ceeEEEEeccCCcEEeccc--------ccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEc-CC
Confidence 112223344444433 12567788899999 87653322 4678899998887655443 23
Q ss_pred cceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984 283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK 316 (380)
Q Consensus 283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 316 (380)
..+.+++|+|++++|++++.++.|++||..+...
T Consensus 295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 4577899999999998888899999998755443
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=7.7e-18 Score=148.63 Aligned_cols=245 Identities=7% Similarity=0.104 Sum_probs=160.4
Q ss_pred cccceEEEEeCCCCCCeEEEeeCC----CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEE
Q psy6984 15 HNGWVTQIATNPKFPDTILSCSRD----NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLR 89 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~~~d----g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~ 89 (380)
|...+..++++|+ +++|++++.+ +.|.+|+++....... .......+......+++ ++++|++++ .++.|.
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEE-EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEE-EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 6677888999998 6788888875 8999999875321111 11122234445666777 888887776 578999
Q ss_pred EEECCCCceeeeec--------------ccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcce------E------E
Q psy6984 90 LWDLAAGKTTRRFE--------------DHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCK------F------T 142 (380)
Q Consensus 90 vwd~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~------~------~ 142 (380)
+|++.....+.... .+...+.+++|+|+|++++++. .++.+.+|++..... + .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99997543332211 1123357899999999776555 588999998654321 1 1
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeE--ee---eCCccceEEEEEcCCCCEEEEEcC--C
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKI--NH---SGHTGYLNTVTVSPDGSLCASGGK--D 214 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~l~~~~~--d 214 (380)
............++|+|+++ ++++++ .++.|.+||+.++++.. .. ..+...+..++|+|+|++|+++.. +
T Consensus 204 ~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGK--FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEECCTTCCEEEEEECTTSS--EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ceecCCCCCCeEEEEcCCCC--EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 22233445678999999875 454444 68999999998665422 12 223345679999999998866655 4
Q ss_pred CcEEEEECC--CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 215 MNAMLWDLN--DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 215 ~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
+.|.+|++. +++...... +.. ...+..++|+|
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~---------------------------------------------~~~-g~~~~~~~~sp 315 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGY---------------------------------------------QLT-GIHPRNFIITP 315 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEE---------------------------------------------EEC-SSCCCEEEECT
T ss_pred CEEEEEEEcCCCCcEEEeeE---------------------------------------------ecC-CCCCceEEECC
Confidence 899999985 232110000 000 12345789999
Q ss_pred cCCEEEEee-CCCcEEEEec
Q psy6984 293 DNRQIVSSS-RDKTIKLWNT 311 (380)
Q Consensus 293 ~~~~l~s~~-~dg~v~iw~~ 311 (380)
+|++|++++ .++.|.+|++
T Consensus 316 dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 316 NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp TSCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEE
Confidence 999888887 5789999864
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.2e-19 Score=174.85 Aligned_cols=279 Identities=11% Similarity=0.053 Sum_probs=182.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC---CeEEEEEeCCCCEEEEEeC---------CCcEEEEeCC
Q psy6984 69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSVAFSVDNRQIVSSSR---------DKTIKLWNTL 136 (380)
Q Consensus 69 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~s~~~---------d~~v~iwd~~ 136 (380)
.+.|+|||++++ .+.|+.|++||+.+++....+..|.. .+.+++|+|||+++++++. ++.+++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 678999996555 45699999999999988777665543 4889999999999998876 7899999987
Q ss_pred CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-eCCccce-----------------EE
Q psy6984 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-SGHTGYL-----------------NT 198 (380)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~ 198 (380)
++...... .....+..++|+|+++. |+.+. ++.|++||+.+++..... .++...+ .+
T Consensus 99 ~g~~~~~~--~l~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGN--ELPRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSS--CCCSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccce--ecCcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 65431000 11245788999999864 55554 789999999876543321 2222222 47
Q ss_pred EEEcCCCCEEEEEcCCC----------------------------------cEEEEECCCCcEE--EEE-------EecC
Q psy6984 199 VTVSPDGSLCASGGKDM----------------------------------NAMLWDLNDGKHL--HTL-------VHND 235 (380)
Q Consensus 199 ~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~--~~~-------~~~~ 235 (380)
++|+|||++|++++.|. .|++||+.+++.. ..+ .+..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999987652 7889999887642 111 1455
Q ss_pred ceEEEEeecCcccceeeeeeeeeccccceEEEE----cCCceeeeee----ecccccee-----EEEEeecCCEEEE--e
Q psy6984 236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYP----INHGKMETPF----FSLFRDVL-----SVAFSVDNRQIVS--S 300 (380)
Q Consensus 236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~s--~ 300 (380)
.+..++|+|++..... ...+......+++++ ..+++....+ ..+...+. .++|+|||+.|+. .
T Consensus 254 ~~~~~~~SpD~~~~~~--~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQ--WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp EEEEEEESSSSEEEEE--EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred eEEEeEEeCCCeEEEE--EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 6889999999653222 111222234577888 7666654433 23444454 7899999996543 5
Q ss_pred eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee-----CCeEEEEEeee
Q psy6984 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-----DNTIRVWQVSV 375 (380)
Q Consensus 301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-----dg~v~iw~~~~ 375 (380)
..+|..++|-. +..+... ..+. .+...+..+.++ +|+.|+..+. ++.+++|.+..
T Consensus 332 ~~~g~~~l~~~---------~~~~~~~-~~lt---------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 332 DKDGYKHIHYI---------KDTVENA-IQIT---------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CTTSCEEEEEE---------SSCSTTC-EECS---------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ccCCceEEEEE---------ECCCCce-Eecc---------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 56665444421 1121110 1110 112234566666 8887776554 48899999875
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2.7e-18 Score=151.78 Aligned_cols=280 Identities=6% Similarity=0.032 Sum_probs=174.6
Q ss_pred eEEEeeC--CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeeeccc-C
Q psy6984 31 TILSCSR--DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDH-T 106 (380)
Q Consensus 31 ~l~t~~~--dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~h-~ 106 (380)
+++.|+. ++.|.+|+++...................+..++++|||++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 3444544 256777776432211111000001233357789999999999999988 99999997 77654432211 1
Q ss_pred CCeEEEEEeCCCCE--EEEEe-------------CCCcEEEEeCCC-cceEEEee---CCCcCcEEEEEEccCCCCCEEE
Q psy6984 107 KDVLSVAFSVDNRQ--IVSSS-------------RDKTIKLWNTLA-HCKFTIVE---DGHSDWVSCVRFSPNHQNPIIV 167 (380)
Q Consensus 107 ~~v~~~~~~~~~~~--~~s~~-------------~d~~v~iwd~~~-~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~ 167 (380)
+.+..++|+|||+. ++++. .++.+.+|++.. +....... ..+...+.+++|+|+++ +++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~ 160 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLY 160 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEE
Confidence 23556889999995 44543 689999999753 32221111 12445689999999875 455
Q ss_pred EEe-CCCeEEEEeCC-CceeeE--eee--CCccceEEEEEcCCCCEEEEEcC-CCcEEEEECC--CCcEEE---EEE-ec
Q psy6984 168 SAG-WDRMVKVWNLT-NCKLKI--NHS--GHTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLN--DGKHLH---TLV-HN 234 (380)
Q Consensus 168 s~~-~d~~v~iwd~~-~~~~~~--~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~-~~ 234 (380)
++. .++.|++||+. ++++.. ... .|...+..++|+|+|+++++++. ++.+.+|++. +++... .+. .+
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 544 46899999998 555432 222 23456899999999998877664 7899999765 455321 221 11
Q ss_pred ------C-------ceEEEE-eecCcccceeeeeeeeeccccceEEEEcC-Cceeeee---eeccccceeEEEEee---c
Q psy6984 235 ------D-------IITALC-FSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETP---FFSLFRDVLSVAFSV---D 293 (380)
Q Consensus 235 ------~-------~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~v~~~~~s~---~ 293 (380)
. .+..++ |+|++++.............+.+.+|++. .++.... ...+......++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 1 478899 99998764322110000001268899885 4554321 112334566889999 8
Q ss_pred CCEEEEeeCC-CcEEEEeccc
Q psy6984 294 NRQIVSSSRD-KTIKLWNTLA 313 (380)
Q Consensus 294 ~~~l~s~~~d-g~v~iw~~~~ 313 (380)
|++|++++.+ +.|++|+...
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEET
T ss_pred CCEEEEEEcCCCeEEEEEEch
Confidence 9999988764 8999998643
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=7.2e-18 Score=149.03 Aligned_cols=274 Identities=9% Similarity=0.031 Sum_probs=167.5
Q ss_pred EEEEEeCC--CcEEEEEC--CCCceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CcceEEEee-CCC
Q psy6984 78 YALSGSWD--KTLRLWDL--AAGKTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVE-DGH 148 (380)
Q Consensus 78 ~l~s~~~d--~~i~vwd~--~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~-~~~~~~~~~-~~~ 148 (380)
+++.|+.. +.|.+|++ .+++....-. .....+..++|+||++++++++.+ .+.+|++. .+....... ..+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555542 46777665 4554432211 233467889999999999998888 89999975 443322211 111
Q ss_pred cCcEEEEEEccCCCCCEEEEEe-------------CCCeEEEEeCCC-ceeeEeee----CCccceEEEEEcCCCCEEEE
Q psy6984 149 SDWVSCVRFSPNHQNPIIVSAG-------------WDRMVKVWNLTN-CKLKINHS----GHTGYLNTVTVSPDGSLCAS 210 (380)
Q Consensus 149 ~~~v~~~~~~~~~~~~~l~s~~-------------~d~~v~iwd~~~-~~~~~~~~----~~~~~i~~~~~~~~~~~l~~ 210 (380)
....+++++|+++..+++++. .++.+++|++.. +++..... .+...+..++|+|+|+++++
T Consensus 83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 124457888876532344543 689999999973 44332222 24557899999999998877
Q ss_pred Ec-CCCcEEEEECC-CCcEE--EEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee---ee
Q psy6984 211 GG-KDMNAMLWDLN-DGKHL--HTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET---PF 278 (380)
Q Consensus 211 ~~-~d~~i~i~d~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~ 278 (380)
+. .++.|++||+. +++.. ..+. +...+..++|+|++.+.... ....+.+.+|+.. +++... ..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-----~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-----MEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-----ETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-----ECCCCeEEEEEEeCCCCcEEEccceE
Confidence 65 46899999998 67643 2232 24568899999998754322 1123566777654 344321 11
Q ss_pred ec-------ccc------ceeEEE-EeecCCEEEEeeCCC------cEEEEecccceeeeEeecccceEEEeeCcccccc
Q psy6984 279 FS-------LFR------DVLSVA-FSVDNRQIVSSSRDK------TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ 338 (380)
Q Consensus 279 ~~-------~~~------~v~~~~-~s~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (380)
.. +.. .+..++ |+|||++|+++..+. +|++|++....++... .....
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~-------~~~~~------ 303 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ-------LFLSP------ 303 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-------EEEEE------
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe-------eeeee------
Confidence 11 111 477899 999999988766432 8999986421111100 00000
Q ss_pred cCCCCCCceEEEEEec---CCCEEEEEee-CCeEEEEEee
Q psy6984 339 STKADPPMCLSLAWST---DGQTLFAGYS-DNTIRVWQVS 374 (380)
Q Consensus 339 ~~~~~~~~~~~~~~s~---dg~~l~~g~~-dg~v~iw~~~ 374 (380)
........++|+| ||++|++++. ++.|++|++.
T Consensus 304 ---~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 304 ---TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ---CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ---cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 0011123578999 8999998876 5899999885
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=7.9e-18 Score=160.70 Aligned_cols=251 Identities=11% Similarity=0.078 Sum_probs=165.5
Q ss_pred EecCcccceEEEEeCCCCCCeEEEe--eCCCeEEEeecCCCCCCcccccccccCCCcceE---------EEEEc--cCCC
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSC--SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS---------DIVLS--SDGN 77 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~--~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~ 77 (380)
.+.+|...|..+.++++ .-++++. +.++...+|....... ...+..|...+. ...++ |||+
T Consensus 18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCccccccccccCCccceeeeecCCC
Confidence 35678999999999976 3445555 5588999998632211 223444544444 45555 9999
Q ss_pred E-EEEEeC-CCcEEEEECC--C-Cceeeeecc-----cCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCC
Q psy6984 78 Y-ALSGSW-DKTLRLWDLA--A-GKTTRRFED-----HTKDVLSVAFSVDNRQIVSSSRD----------KTIKLWNTLA 137 (380)
Q Consensus 78 ~-l~s~~~-d~~i~vwd~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~~~~~s~~~d----------~~v~iwd~~~ 137 (380)
+ |+.++. +..|+++++. . ++ ...+.. |...+..++|+|||+.|+.++.+ ..|.+||+.+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 8 776554 5677777775 2 33 444444 56678899999999999988876 5899999876
Q ss_pred ------cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC--------CeEEEEeCC-Cc---eeeEeeeCCccceEEE
Q psy6984 138 ------HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD--------RMVKVWNLT-NC---KLKINHSGHTGYLNTV 199 (380)
Q Consensus 138 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------~~v~iwd~~-~~---~~~~~~~~~~~~i~~~ 199 (380)
+.. ..+...+...+..++|+|+++ .|+.++.+ ..|++||+. ++ +......+|...+..+
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~--~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGR--QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSS--EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCC--EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 433 233213345677899999876 45555433 479999998 45 4433344456788999
Q ss_pred EEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984 200 TVSPDGSLCASGGKDM--NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277 (380)
Q Consensus 200 ~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (380)
.|+|||++++++..++ .|++||+.+++......+...+....|+
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~---------------------------------- 293 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT---------------------------------- 293 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS----------------------------------
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccc----------------------------------
Confidence 9999999888888888 6666666555432211111110000010
Q ss_pred eeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
..+..++|+|+++++++++. +.+++|.+
T Consensus 294 -----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 294 -----PGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp -----TTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred -----ccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 11345789999999999998 99999953
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=2.7e-18 Score=153.26 Aligned_cols=213 Identities=10% Similarity=-0.061 Sum_probs=132.9
Q ss_pred eeeEEeEEecCcccc-----eEEEEeCCCCCCeEEEeeC-CC--eEEEeecCCCCCCcccccccccCCCcc-eEEEEEcc
Q psy6984 4 ETLQLRGTLNGHNGW-----VTQIATNPKFPDTILSCSR-DN--TLIIWKLTRDDTNYGVPQKRLKGHSHF-ISDIVLSS 74 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~-----v~~i~~~~~~~~~l~t~~~-dg--~v~vw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~ 74 (380)
.+.+....|..+... +..+.|+|+ +++|+.... ++ .+.+|++..... ..+..+... ...+.|+|
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~------~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQA------VQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEE------EECCCSSCBCTTTCEECT
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcE------EEeecCCCCccccceECC
Confidence 333444555555433 778889998 567665543 33 677777654321 112222222 33478999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEE-------------------EEEeCCCCEEEEE-----eCCCcE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS-------------------VAFSVDNRQIVSS-----SRDKTI 130 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~~s~-----~~d~~v 130 (380)
||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.. ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999999999999999988766555434332222 2456777665543 356688
Q ss_pred EEEeCCCcceEEEeeCCCcCcEEEEEEcc-CCCCCEEEEEeCC------CeEEEEeCCCceeeEeeeCC-ccceEEEEEc
Q psy6984 131 KLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGWD------RMVKVWNLTNCKLKINHSGH-TGYLNTVTVS 202 (380)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~ 202 (380)
.+||+.++...... .+...+..+.|+| ++.. |+..+.+ ..|.+||+...+........ ...+..+.|+
T Consensus 171 ~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 171 IKVDIETGELEVIH--QDTAWLGHPIYRPFDDST--VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI 246 (396)
T ss_dssp EEEETTTCCEEEEE--EESSCEEEEEEETTEEEE--EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred EEEECCCCcEEeec--cCCcccccceECCCCCCE--EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence 99998765544333 2455688999999 5543 3332222 46888998765433322221 2357889999
Q ss_pred CCCCEEEEEcCC-----CcEEEEECCCCcE
Q psy6984 203 PDGSLCASGGKD-----MNAMLWDLNDGKH 227 (380)
Q Consensus 203 ~~~~~l~~~~~d-----~~i~i~d~~~~~~ 227 (380)
|+|++|+..+.+ +.|++||+.+++.
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 999987766543 3489999877653
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=4.5e-16 Score=132.65 Aligned_cols=244 Identities=13% Similarity=0.205 Sum_probs=168.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec------ccCCCeEEEEEe-CCCCEEEEEeC-CCcEEE
Q psy6984 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE------DHTKDVLSVAFS-VDNRQIVSSSR-DKTIKL 132 (380)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~-~~~~~~~s~~~-d~~v~i 132 (380)
.++-..+.+++++++++++++...++.|.+||.. ++....+. .+...+..++++ +++..+++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3455668899999999988888889999999987 55555553 234568899994 67766666543 889999
Q ss_pred EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEE
Q psy6984 133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCAS 210 (380)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 210 (380)
||. ...........+...+.++++.|++. ++++...++.|.+||... +....+. .+...+..++++|+|+++++
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 994 34444334334455688999998753 677777789999999754 3333332 34456899999999998888
Q ss_pred EcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEE
Q psy6984 211 GGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAF 290 (380)
Q Consensus 211 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 290 (380)
...++.|++||.. ++.+..+.. . +....+..+++
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~-----------~----------------------------------g~~~~p~~i~~ 214 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGG-----------E----------------------------------GITNYPIGVGI 214 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESC-----------T----------------------------------TTSCSEEEEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEcc-----------C----------------------------------CccCCCcEEEE
Confidence 8889999999974 332222110 0 00123457899
Q ss_pred eecCCEEEEeeCCC-cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEE
Q psy6984 291 SVDNRQIVSSSRDK-TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIR 369 (380)
Q Consensus 291 s~~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~ 369 (380)
+|+|+++++...++ .|++|+... ..+..+.. ......+..++++|+|+++++ +.|+.|+
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~------------------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQDG-QLISALES------------------KVKHAQCFDVALMDDGSVVLA-SKDYRLY 274 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECTTS-CEEEEEEE------------------SSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred CCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcc------------------cCCCCcceeEEECCCCcEEEE-CCCCeEE
Confidence 99999888887775 999998432 21111100 011123568999999997776 5799999
Q ss_pred EEEeee
Q psy6984 370 VWQVSV 375 (380)
Q Consensus 370 iw~~~~ 375 (380)
+|++..
T Consensus 275 v~~~~~ 280 (286)
T 1q7f_A 275 IYRYVQ 280 (286)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 999754
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=2.3e-16 Score=137.28 Aligned_cols=244 Identities=12% Similarity=0.144 Sum_probs=176.6
Q ss_pred cceEEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCC
Q psy6984 65 HFISDIVLSSDGNYALSGSWD------------------------KTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNR 119 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d------------------------~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 119 (380)
..+.+++++|+|+++++...+ +.|.+||..+++....+. .+...+..++++|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 458999999999999888877 479999998888876654 3445788999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcc-eEEEee--------CCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeEee
Q psy6984 120 QIVSSSRDKTIKLWNTLAHC-KFTIVE--------DGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKINH 189 (380)
Q Consensus 120 ~~~s~~~d~~v~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~ 189 (380)
.+++...++.|++||..... ....+. ..+......++++|+.. .++++.+ .++.|++||.. ++....+
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~-g~~~~~~ 181 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPS-GKFVTQW 181 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence 88888889999999975442 222221 23445688999998322 2666665 68999999954 4443333
Q ss_pred e----------CCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceee-ee
Q psy6984 190 S----------GHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIK-LD 254 (380)
Q Consensus 190 ~----------~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~-~~ 254 (380)
. ++...+..++++|+ ++++++...+++|++||..+++.+..+. +...+..++++| +...... ..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 2 12334889999998 7888888899999999999888877764 345677888888 2111111 00
Q ss_pred eeeeccccceEEEEcCCceeeeeee---ccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 255 ISRTLQKSNLILYPINHGKMETPFF---SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
.........+.+|+...++....+. .+......++++|+|..+++...++.|++|+.
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 1111234567888888887766542 44566889999999988888888999999975
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=4.3e-16 Score=132.74 Aligned_cols=246 Identities=15% Similarity=0.260 Sum_probs=168.7
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccc-ccccCCCcceEEEEE-ccCCCEEEEEeC-CCcEEE
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ-KRLKGHSHFISDIVL-SSDGNYALSGSW-DKTLRL 90 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~-~~~~~~l~s~~~-d~~i~v 90 (380)
+|...+..+++.++ +.++++.+.++.|++|+.... ....... ....+|...+..+++ .++++++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 44567999999987 578888788999999986532 1111110 011234556889999 467766666543 889999
Q ss_pred EECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984 91 WDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 91 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 169 (380)
|| .+++....+.. +...+.+++++|+++.+++...++.|.+||.............+...+.++++++++. ++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE--IFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE--EEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC--EEEEE
Confidence 99 55666665532 3456899999999998888888899999996543222222223445688999998753 66777
Q ss_pred eCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984 170 GWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDM-NAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246 (380)
Q Consensus 170 ~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~ 246 (380)
..++.|++||... +....+. ++...+..++++|+|+++++...++ .|.+||. +++.+..+....
T Consensus 182 ~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~----------- 248 (286)
T 1q7f_A 182 NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV----------- 248 (286)
T ss_dssp GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-----------
T ss_pred CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-----------
Confidence 7789999999854 3333333 2235789999999999988888886 9999985 344332221100
Q ss_pred ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
....+.+++++|+|+++++ +.|+.|++|+..
T Consensus 249 ----------------------------------~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 249 ----------------------------------KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp ----------------------------------CCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred ----------------------------------CCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 0012457899999987777 579999999753
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.2e-17 Score=159.35 Aligned_cols=236 Identities=13% Similarity=0.154 Sum_probs=159.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC-----eEEEEEeCCCCEEEEEeCC---------CcEEE
Q psy6984 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD-----VLSVAFSVDNRQIVSSSRD---------KTIKL 132 (380)
Q Consensus 67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~s~~~d---------~~v~i 132 (380)
...+.|+|||++++++ |+.|++||+.+++....+..|... ..+++|||||+.++.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 5579999999988886 999999999999887777766532 2447899999999998876 45669
Q ss_pred EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCccce---------------
Q psy6984 133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTGYL--------------- 196 (380)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~i--------------- 196 (380)
||+.++.... ...+...+..++|+|+++. |+.+ .++.|++||+.+++.... ..++...+
T Consensus 97 ~d~~~~~~~~--l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 97 YDLNKRQLIT--EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EETTTTEECC--SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EECCCCcEEE--cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 9987765432 2345667999999999874 4444 478999999987654321 22222222
Q ss_pred --EEEEEcCCCCEEEEEcCCC------------------------------------cEEEEECCC---C---cEEEEEE
Q psy6984 197 --NTVTVSPDGSLCASGGKDM------------------------------------NAMLWDLND---G---KHLHTLV 232 (380)
Q Consensus 197 --~~~~~~~~~~~l~~~~~d~------------------------------------~i~i~d~~~---~---~~~~~~~ 232 (380)
..+.|||||+.|+.++.|. .|++||+.+ + +......
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 3488999999998875321 588899988 7 3333222
Q ss_pred ------ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce----e--eeee--eccccc-----eeEEEEeec
Q psy6984 233 ------HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK----M--ETPF--FSLFRD-----VLSVAFSVD 293 (380)
Q Consensus 233 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~--~~~~~~-----v~~~~~s~~ 293 (380)
+...+..++|+|++..... ...+......+.+++..+++ . ...+ ..+... ....+|+||
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~--~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQ--WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEE--EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEE--EeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 4556889999999874322 22223334467888887765 1 1112 122222 236889999
Q ss_pred CCEEE-Eee-CCC--cEEEEec
Q psy6984 294 NRQIV-SSS-RDK--TIKLWNT 311 (380)
Q Consensus 294 ~~~l~-s~~-~dg--~v~iw~~ 311 (380)
|+.|+ ..+ .+| .|++|+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEET
T ss_pred CCEEEEEEEcCCCceEEEEEEC
Confidence 99877 555 455 4555554
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=7.7e-16 Score=135.53 Aligned_cols=263 Identities=9% Similarity=0.006 Sum_probs=171.9
Q ss_pred CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeeeeccc-
Q psy6984 37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW----------DKTLRLWDLAAGKTTRRFEDH- 105 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~h- 105 (380)
.|+.|.+||...... ...+..+..+ .++|+|||++|+++.. ++.|.+||..+.+.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~-----~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF-----LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCE-----EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeE-----EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 478999999754322 1223334333 8999999999998863 567999999988888776532
Q ss_pred -----CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEE-eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984 106 -----TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177 (380)
Q Consensus 106 -----~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 177 (380)
......++++|||++++++.. ++.|.+||+.+...... +.. . ....+.+.|.+. ..+++.+.||.+.+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~-~~~~v~~~p~~~-~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--A-GCWSVIPQPNRP-RSFMTICGDGGLLT 177 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--T-TEEEEEECTTSS-SEEEEEETTSSEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--C-CcceeEEcCCCC-eeEEEECCCCcEEE
Confidence 234667999999999998764 68999999887655433 321 1 123356677654 46778888999999
Q ss_pred EeCCC-ceeeEee------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEEe-----------cCce
Q psy6984 178 WNLTN-CKLKINH------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH--LHTLVH-----------NDII 237 (380)
Q Consensus 178 wd~~~-~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~-----------~~~i 237 (380)
|++.. ++..... .....++ .+.++|++..++..+.++.+.++|+..... ...+.. ....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred EEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 99864 3332111 1111111 223356777777778899999999875432 122111 1111
Q ss_pred EEEEeecCcccceeeeeeeee-----ccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984 238 TALCFSPNRSFQKIKLDISRT-----LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312 (380)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 312 (380)
..++++|++............ .....+.+|+..+++....+..+. ...++|+|||++|++++. ++|.+||..
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 126778876543222110000 013468889999988877665554 899999999999998876 999999865
Q ss_pred cc
Q psy6984 313 AH 314 (380)
Q Consensus 313 ~~ 314 (380)
++
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1e-15 Score=133.46 Aligned_cols=293 Identities=11% Similarity=0.056 Sum_probs=185.3
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 95 (380)
...|.++.++++ ...++..+.++.++.|.-. ....+..+...+.+++|+++|++++++..++.|.+||..+
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 5 QQDLPTLFYSGK-SNSAVPIISESELQTITAE--------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp -CCCCBCCSCGG-GGCSSCCCCGGGSCEEECE--------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ccccceeeecCC-ccceeEEeecccCcccccc--------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 346778888887 4556666778899999311 1223445556678999999999888888899999999988
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAG 170 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~ 170 (380)
++.......+...+.+++++|+++++++...+ +.|.+||..+........ ......+.++++.|++. ++++..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~ 153 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG--FYFTDF 153 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC--EEEEEC
T ss_pred CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC--EEEEec
Confidence 87665544566789999999999988877766 689999976654432222 22345688999999753 555544
Q ss_pred C------CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEe
Q psy6984 171 W------DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCF 242 (380)
Q Consensus 171 ~------d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~ 242 (380)
. .+.|..+|..+.+.... ..+...+..++++|+|+.+ ++.+.++.|.+||+.+ +.....+.. ..
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-----~~-- 225 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA-----TI-- 225 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-----EE--
T ss_pred cccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-----eE--
Confidence 2 35666777655443322 2233457889999999855 5556678999999853 222211100 00
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
..... . ...+..++++++|+++++...++.|.+|+.. +..+..+..
T Consensus 226 -----------------------~~~~~---------~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~ 271 (333)
T 2dg1_A 226 -----------------------PYYFT---------G-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILI 271 (333)
T ss_dssp -----------------------EEECC---------S-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEEC
T ss_pred -----------------------EEecC---------C-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEc
Confidence 00000 0 0123468899999988887778999999862 222211110
Q ss_pred ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC----eEEEEEeee
Q psy6984 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN----TIRVWQVSV 375 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg----~v~iw~~~~ 375 (380)
.. ....+...+.+++|+|||+.|+.++.++ .-.+|.+..
T Consensus 272 ~~--------------~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 272 PG--------------RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TT--------------GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CC--------------CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 00 0000111356789999988877666553 345666544
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2e-16 Score=140.87 Aligned_cols=266 Identities=12% Similarity=0.066 Sum_probs=169.3
Q ss_pred EEECCCCceeeeecccCCCeEE-----EEEeCCCCEEEEEeC-CCc--EEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 90 LWDLAAGKTTRRFEDHTKDVLS-----VAFSVDNRQIVSSSR-DKT--IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 90 vwd~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~~s~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
.+|..++.....+..|...... .+|+|||+.|+.++. ++. |.+||+.++... .+..++...+..+.|+|++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcCCC
Confidence 3466777777777777666555 789999999998887 664 777787665443 3333444444457899987
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEE--EEcCCCCEEEEE----------------------cCCCcE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV--TVSPDGSLCASG----------------------GKDMNA 217 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~d~~i 217 (380)
+ .|+.++.++.|++||+.+++.......+...+... .++|++++++.. ..+..|
T Consensus 93 ~--~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 93 D--ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp S--EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred C--EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 5 57778888999999999887665555554444333 358999988742 245789
Q ss_pred EEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc--cceeEEEEeecC
Q psy6984 218 MLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF--RDVLSVAFSVDN 294 (380)
Q Consensus 218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~ 294 (380)
++||+.+++......+...+..+.|+| ++.................+++++...+... .+.... ..+..++|+|||
T Consensus 171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTS
T ss_pred EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCC
Confidence 999999998766666777889999999 8765443322111111346777776655432 233333 246788999999
Q ss_pred CEEEEeeC-CC----cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE-------
Q psy6984 295 RQIVSSSR-DK----TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG------- 362 (380)
Q Consensus 295 ~~l~s~~~-dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g------- 362 (380)
+.|+..+. ++ .|++||+..+....+.......... . . ....+|+|||+.|+..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-~-----------~---~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-S-----------N---YDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE-E-----------C---TTSSEEEEEECCC----------
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee-e-----------c---CCCCeEccCCCcceeEeeecccc
Confidence 98766443 22 3999987655432222111100000 0 0 0013699999988753
Q ss_pred --eeCCeEEEEEee
Q psy6984 363 --YSDNTIRVWQVS 374 (380)
Q Consensus 363 --~~dg~v~iw~~~ 374 (380)
..+..|.+|++.
T Consensus 315 ~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 315 KIENDPFLYVFNMK 328 (388)
T ss_dssp --CCCCEEEEEETT
T ss_pred ccCCCCEEEEEecc
Confidence 345688999864
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=3.5e-15 Score=129.81 Aligned_cols=244 Identities=13% Similarity=0.127 Sum_probs=168.4
Q ss_pred CCCeEEEEEeCCCCEEEEEeCC------------------------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 106 TKDVLSVAFSVDNRQIVSSSRD------------------------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 106 ~~~v~~~~~~~~~~~~~s~~~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
-+.+.+++++|+|+.+++...+ +.|.+||..++........++......++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3568999999999998888877 4799999766655544444555678899999876
Q ss_pred CCCEEEEEeCCCeEEEEeCCCce-eeEee---------eCCccceEEEEEcC-CCCEEEEEc-CCCcEEEEECCCCcEEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCK-LKINH---------SGHTGYLNTVTVSP-DGSLCASGG-KDMNAMLWDLNDGKHLH 229 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~ 229 (380)
. ++++...++.|+.||..... ....+ .++...+..++++| +++++++.+ .++.|++|| .+++.+.
T Consensus 103 ~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 103 N--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp C--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred C--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 4 77788888999999986542 22222 23445789999999 888888886 699999999 5676666
Q ss_pred EEEe-c----------CceEEEEeecC-cccceeeeeeeeeccccceEEEEcCCceeeeeee--ccccceeEEEEee---
Q psy6984 230 TLVH-N----------DIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPINHGKMETPFF--SLFRDVLSVAFSV--- 292 (380)
Q Consensus 230 ~~~~-~----------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~--- 292 (380)
.+.. . ..+..++++|+ +.... .......+.+|+..+++....+. .....+..++|+|
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v------~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV------ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEE------EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEE------EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence 6532 1 23788999987 43321 12345678889887676655442 2345677888888
Q ss_pred ---cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEE
Q psy6984 293 ---DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIR 369 (380)
Q Consensus 293 ---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~ 369 (380)
+++.+++...+..|++|+...+..+..+ .. ...+......++++|||+++++...++.|+
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-----------~~------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-----------KP------VRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEE-----------CC------SSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-----------cC------CCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 4444444444558888886554433222 10 011223456899999998888888899999
Q ss_pred EEEeee
Q psy6984 370 VWQVSV 375 (380)
Q Consensus 370 iw~~~~ 375 (380)
+|++.-
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999864
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.4e-16 Score=142.09 Aligned_cols=260 Identities=12% Similarity=0.068 Sum_probs=160.5
Q ss_pred cceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984 65 HFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~ 141 (380)
..+..++|+|||++|+..... ..|++||+.+++.......+......+.|+|||+.|+.++.++.+.+||+.+....
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 346778999999998877543 47899999887765543333222334789999999999999999999998765443
Q ss_pred EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE-----cCCCc
Q psy6984 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG-----GKDMN 216 (380)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~d~~ 216 (380)
.... .+.. +.++++ .|+....+....+|. ..+.++|+++.++.. ..+..
T Consensus 116 ~~~~-~~~~------~~~~g~--~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 116 VIYT-VDEE------WKGYGT--WVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp EEEE-CCTT------EEEEEE--EEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred EEEe-cccc------cCCCCC--EEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcce
Confidence 3322 2222 222221 233333333333332 123467888877654 46678
Q ss_pred EEEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeecc--ccceeEEEEeec
Q psy6984 217 AMLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL--FRDVLSVAFSVD 293 (380)
Q Consensus 217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~ 293 (380)
|++||+.+++..........+..+.|+| ++....+............+++++...++... +... ...+..++|+||
T Consensus 170 l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTT
T ss_pred EEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCC
Confidence 9999999888766666777788999999 66533322110000011467888876554332 2222 224778899999
Q ss_pred CCEEEEeeCC-----CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec-CCCEEEEEe----
Q psy6984 294 NRQIVSSSRD-----KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST-DGQTLFAGY---- 363 (380)
Q Consensus 294 ~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~g~---- 363 (380)
|++|+.++.+ +.|++||+..+....+. .. + ... +.|+| ||++|++++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~---------~~------------~-~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVM---------VM------------P-PCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE---------EC------------C-SEE-EEEECSSSSEEEEEECCC-
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEee---------eC------------C-CCC-CCccCCCCceEEEecCCcc
Confidence 9988777554 44888886443221111 00 0 012 78999 999888654
Q ss_pred ------------eCCeEEEEEee
Q psy6984 364 ------------SDNTIRVWQVS 374 (380)
Q Consensus 364 ------------~dg~v~iw~~~ 374 (380)
.++.|.+|++.
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp ---------CCCCCCEEEEEETT
T ss_pred eeeccccccccCCCCcEEEEecc
Confidence 24678888864
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=1.6e-14 Score=126.44 Aligned_cols=264 Identities=9% Similarity=0.087 Sum_probs=162.1
Q ss_pred cceEEEEEccCCCEEEEEe---------CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---Cc--E
Q psy6984 65 HFISDIVLSSDGNYALSGS---------WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KT--I 130 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~--v 130 (380)
..+..+.+ ||++++... .++.|++||+.+++... + ..+..++|+|||+.++..+.+ +. |
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34667777 888887542 25689999998876543 3 567889999999999877654 33 6
Q ss_pred EEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---------------------------CCeEEEEeCCCc
Q psy6984 131 KLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---------------------------DRMVKVWNLTNC 183 (380)
Q Consensus 131 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------------------------d~~v~iwd~~~~ 183 (380)
.+|++.++........ . . +..++|+|+++. |+.++. ...|.+||+.++
T Consensus 88 ~~~~~~~g~~~~l~~~-~-~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 88 WVADLETLSSKKILEA-K-N-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEETTTTEEEEEEEE-S-E-EEEEEECTTSSE--EEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEECCCCceEEEEcC-C-C-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 6777665544333322 2 2 889999998753 444332 257999999887
Q ss_pred eeeEeeeCCccceEEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeee
Q psy6984 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDM-------NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDIS 256 (380)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 256 (380)
+....+.. . .+..+.|+|+| +++++..+. ...+|.+.+++....... ..+.. ++|++..........
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~ 236 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPE 236 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCS
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccc
Confidence 76223333 3 67889999999 777775542 334443334443322233 33333 388887543322111
Q ss_pred e--eccccceEEEEcCCceeeeeeeccccceeE-EEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984 257 R--TLQKSNLILYPINHGKMETPFFSLFRDVLS-VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP 333 (380)
Q Consensus 257 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 333 (380)
. ......+++++ .++.......+...+.. +.|+ ++ .+++++.++.+++| +..+....+ .
T Consensus 237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-----------~-- 298 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-----------A-- 298 (347)
T ss_dssp SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-----------E--
T ss_pred cCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-----------e--
Confidence 0 00123566666 44433222233456775 8999 88 88899999999999 742211000 0
Q ss_pred ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeE-EEEEee
Q psy6984 334 DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI-RVWQVS 374 (380)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v-~iw~~~ 374 (380)
.+...+.+++|+| +++++++.++.. ++|.+.
T Consensus 299 --------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 --------KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred --------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 0123467889999 677777777765 888764
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.3e-13 Score=127.67 Aligned_cols=327 Identities=10% Similarity=0.073 Sum_probs=203.0
Q ss_pred CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCC
Q psy6984 30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTK 107 (380)
Q Consensus 30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~ 107 (380)
.++++...+++|.++|........ .+. ....+..+.++|||+++++++.|+.|.+||+. +.+.+.++... .
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~-----~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~ 240 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKT-----VLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-S 240 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEE-----EEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-S
T ss_pred eEEEEeCCCCeEEEEECCCCeEEE-----EEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-C
Confidence 456777789999999986543221 122 12245689999999999999999999999996 77777776543 3
Q ss_pred CeEEEEEe----CCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCC---------C-cCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 108 DVLSVAFS----VDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDG---------H-SDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 108 ~v~~~~~~----~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
....++|+ |||++++++. .++.+.++|..+......+... | ...+..+..++.+. .++++...+
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-~~vv~~~~~ 319 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKET 319 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC-EEEEEecCC
Confidence 46789999 6999887665 5589999997665554433211 1 12467788877654 355666778
Q ss_pred CeEEEEeCCCceee-EeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEEe-cCce---EEEE-eecC
Q psy6984 173 RMVKVWNLTNCKLK-INHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVH-NDII---TALC-FSPN 245 (380)
Q Consensus 173 ~~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~i---~~~~-~~~~ 245 (380)
|.|.++|..+.+.. ............+.|+|+|++++++. .++.|.++|+.+++.+..+.. .... .... +.|+
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~ 399 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 399 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC
Confidence 99999998764321 11112234566788999999876654 678999999999987766644 2111 1222 3554
Q ss_pred cccceeeeeeeeeccccceEEEEcCC-------ceeeeeeeccccceeEEEEeecCCEEEEeeC-------CCcEEEEec
Q psy6984 246 RSFQKIKLDISRTLQKSNLILYPINH-------GKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-------DKTIKLWNT 311 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~v~iw~~ 311 (380)
+.... ......+..+.+++... .+....+......-.-+..+|++++|..... ..+|.++|+
T Consensus 400 ~g~v~----~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 400 FGPVW----ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp TEEEE----EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCcEE----EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 32111 11122346677888765 3333333322223345778999998887553 358999986
Q ss_pred ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-----eCCeEEEEEee
Q psy6984 312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-----SDNTIRVWQVS 374 (380)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-----~dg~v~iw~~~ 374 (380)
.+... . +.. ...+.+...... .....+..+..+.|+|+|+.+.... .++.|.|+|..
T Consensus 476 ~~~~~-~--g~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 476 KAMTG-D--GSD--PEFKTLPIAEWA-GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp GGCCC-S--SSC--CCEEEECHHHHH-TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred Ccccc-c--ccC--CCcEEecccccc-ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence 43200 0 000 000111000000 0011234567899999999877653 37899998854
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=2.7e-15 Score=143.18 Aligned_cols=173 Identities=16% Similarity=0.118 Sum_probs=123.3
Q ss_pred CCcceEEEEEccCCCEEEEEeCC----------CcEEEEECCC------Cceeeeec-ccCCCeEEEEEeCCCCEEEEEe
Q psy6984 63 HSHFISDIVLSSDGNYALSGSWD----------KTLRLWDLAA------GKTTRRFE-DHTKDVLSVAFSVDNRQIVSSS 125 (380)
Q Consensus 63 h~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~ 125 (380)
|...+..++|+|||++|+.++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||+.|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence 66778899999999999998877 5899999987 444 4444 5556788899999999999877
Q ss_pred CC--------CcEEEEeCC-Cc--ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCC
Q psy6984 126 RD--------KTIKLWNTL-AH--CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGH 192 (380)
Q Consensus 126 ~d--------~~v~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~ 192 (380)
.+ ..|.+||+. ++ .....+...+...+..+.|+|+++ +++++..++ .|.+||+.+.+.......+
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPATGAATQLCRRE 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe--EEEEECCCCCeEEEEEECCCCceeeccccc
Confidence 55 379999987 34 133333334566789999999876 677777788 6667776565544333332
Q ss_pred ccc--------eEEEEEcCCCCEEEEEcCCCcEEEE--ECCCCcEEEEEE-ecCceEEE
Q psy6984 193 TGY--------LNTVTVSPDGSLCASGGKDMNAMLW--DLNDGKHLHTLV-HNDIITAL 240 (380)
Q Consensus 193 ~~~--------i~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~-~~~~i~~~ 240 (380)
... +..++++|+++++++++. +.+++| |+..++ +..+. +...+..+
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 221 457889999999999998 999999 655555 44443 33445544
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=1.1e-14 Score=128.13 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=179.4
Q ss_pred ceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCcccccc-cccCCCcceEEEE
Q psy6984 3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQK-RLKGHSHFISDIV 71 (380)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~~-~~~~h~~~v~~~~ 71 (380)
.++.++..++..+.++ .++++|+ +++++.++ .+++|.+||.........++.. .-..+......++
T Consensus 38 ~~t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~ 114 (361)
T 2oiz_A 38 YTNGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR 114 (361)
T ss_dssp TTTCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred CCCCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence 3455667777776666 8999998 67777765 3678999997643221111110 0001223466799
Q ss_pred EccCCCEEEEEeC--CCcEEEEECCCCceeee-ecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEE-Eee-
Q psy6984 72 LSSDGNYALSGSW--DKTLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFT-IVE- 145 (380)
Q Consensus 72 ~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~-~~~- 145 (380)
++|||++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|+........ ...
T Consensus 115 ~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~ 192 (361)
T 2oiz_A 115 QTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS 192 (361)
T ss_dssp ECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred ECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence 9999999998864 57899999999988777 542 2 22335667766 677888999999998864422211 110
Q ss_pred ----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE--eee--C----Cc----cceEEEEEcCCCCEEE
Q psy6984 146 ----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--NHS--G----HT----GYLNTVTVSPDGSLCA 209 (380)
Q Consensus 146 ----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~--~----~~----~~i~~~~~~~~~~~l~ 209 (380)
......+ .+.+.+++. .++..+.++.|.++|+....... ... . +. .....++++|+++.+.
T Consensus 193 ~~~~~~~~~~~-~~~~~~~g~--~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 193 KQMFSVKDDPI-FIAPALDKD--KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp CCCSCTTTSCB-CSCCEECSS--EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred cceEcCCCCce-EEEecccCC--EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 1111111 112233332 34455678899999986543221 110 0 00 1112268999988776
Q ss_pred EEcC-----------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc--eeee
Q psy6984 210 SGGK-----------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG--KMET 276 (380)
Q Consensus 210 ~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 276 (380)
++.. ...|.+||+.+++.+..+.... +..++|+|++.+.... .. +.+.+|+..++ +...
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~------n~-~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL------DG-GNVNVYDISQPEPKLLR 341 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE------CS-SCEEEEECSSSSCEEEE
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe------CC-CeEEEEECCCCcceeeE
Confidence 6543 3589999999999999887777 9999999998753321 12 78999999998 7776
Q ss_pred eeeccccceeEEEEeecCC
Q psy6984 277 PFFSLFRDVLSVAFSVDNR 295 (380)
Q Consensus 277 ~~~~~~~~v~~~~~s~~~~ 295 (380)
.+.........++++|+|+
T Consensus 342 ~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 342 TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTSCSSEEEEEECCCSC
T ss_pred EeccCCCCcEEEEecCCCC
Confidence 6555666678899999986
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=2e-12 Score=110.47 Aligned_cols=278 Identities=8% Similarity=-0.015 Sum_probs=184.3
Q ss_pred EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 90 (380)
.+..+...+.+|...++ +.++++...++.|.+|+.. ... .......+...+..++++++|++.++...++.|..
T Consensus 9 ~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKI----TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp ECCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCE----EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cCCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCe----EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 45566778999999987 5677766667899999865 211 11111223456889999999998888777889999
Q ss_pred EECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984 91 WDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 91 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 169 (380)
||.. ++... .+......+.++++++++..+++...++.+..||. .+.............+.++++.+++ .++++.
T Consensus 83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~ 158 (299)
T 2z2n_A 83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN--ALWFTE 158 (299)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS--CEEEEE
T ss_pred ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC--CEEEEe
Confidence 9986 33322 22224456889999999988888877889999987 4333322222334568889998865 356666
Q ss_pred eCCCeEEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe---cCceEEEEeecC
Q psy6984 170 GWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH---NDIITALCFSPN 245 (380)
Q Consensus 170 ~~d~~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~~~~ 245 (380)
..++.|..||. +.+.... .......+..++++++|+++++...++.|.+||. +++... +.. ...+..++++++
T Consensus 159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence 66789999998 5544332 2334456889999999998887777889999999 665432 322 255778888887
Q ss_pred cccceeeeeeeeeccccceEEEEcCCceeeee-eeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETP-FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
+..... ......+..++. .+..... .......+.++++ ++++.+++.. .+.+..++
T Consensus 236 g~l~v~------~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 236 IDLWFT------EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp TCEEEE------ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred CCEEEe------ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 643211 112455667776 3332221 1223356788999 8888777655 44454444
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=5.2e-12 Score=107.80 Aligned_cols=278 Identities=9% Similarity=0.008 Sum_probs=181.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984 63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~ 141 (380)
+...+.+++++++|+..++...++.|.+||.. ++..... ..+...+.++++++++...++...++.|..||.... ..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EE
Confidence 34568899999999988777768899999988 5543322 234567899999999998888777888999986532 22
Q ss_pred EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220 (380)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 220 (380)
..........+.++++.+++ .++++...++.|..||. +.+... ........+..++++++|+++++...++.|..|
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp EEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence 22212234568889998865 36666666789999998 443332 223344568999999999988888778899999
Q ss_pred ECCCCcEEEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee-eeccccceeEEEEeecCCEE
Q psy6984 221 DLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP-FFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 221 d~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 297 (380)
|. +++...... ....+..+++.+++..... ......+..++. .++.... .......+.+++++++|+.+
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFV------EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLW 239 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE------ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEE
Confidence 98 665443211 2344678888877643211 112345666766 4443321 12233568899999999977
Q ss_pred EEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 298 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~ 375 (380)
++...++.|..|+. .+ .+..+.. ......+.++++ ++|+++++.. .+.+..++...
T Consensus 240 v~~~~~~~i~~~d~-~g-~~~~~~~------------------~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 240 FTEWGANKIGRLTS-NN-IIEEYPI------------------QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEETTTTEEEEEET-TT-EEEEEEC------------------SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred EeccCCceEEEECC-CC-ceEEEeC------------------CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 77667788999975 22 1111100 011223567888 8998877654 56666666643
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=9.3e-14 Score=120.63 Aligned_cols=262 Identities=10% Similarity=0.030 Sum_probs=172.5
Q ss_pred CCCeEEEeecCCCCCCcccccc-cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984 37 RDNTLIIWKLTRDDTNYGVPQK-RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 115 (380)
.+++|.++|.........+... .-.........+.+. +++..++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 4889999997653322111100 001122345667764 34455556667899999999999988874 34668899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCC----cCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeEeee
Q psy6984 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGH----SDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKINHS 190 (380)
Q Consensus 116 ~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~ 190 (380)
+++...++...++.|.+||..+......+..+. ......+++ .+ ..++++.. .++.|.++|+.+.+......
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 998544444488999999987765544433222 113445666 22 22344433 48899999999887765554
Q ss_pred CCccceEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCcEEEEEEe--cCceEEEEeecCcccceeeeeeeee
Q psy6984 191 GHTGYLNTVTVSPDGSLCASGGKD----------MNAMLWDLNDGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRT 258 (380)
Q Consensus 191 ~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~ 258 (380)
.. .....+.++|+|+++++...+ +.|.++|..+++....+.. ...+..++++|++......
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~------ 242 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI------ 242 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE------
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE------
Confidence 32 345678899999987777654 7899999999887766654 3468899999987643221
Q ss_pred ccccceEEEEcCCceeee-eeecc-ccceeEEEEee-cCCEEEEe----eCCCcEEEEecc
Q psy6984 259 LQKSNLILYPINHGKMET-PFFSL-FRDVLSVAFSV-DNRQIVSS----SRDKTIKLWNTL 312 (380)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~s~-~~~~l~s~----~~dg~v~iw~~~ 312 (380)
...+.+++..+++... .+... ......++++| +++.+++. ..++.|.+|+..
T Consensus 243 --~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 --NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp --SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred --ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 1167788887776532 22221 34577899999 55666665 568899999875
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=1.1e-13 Score=116.66 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=158.9
Q ss_pred ceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984 66 FISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~ 144 (380)
...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++.+++.. ++.|.+||....... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 567899999999777 447788999999765543322223334678899999999666665 889999997654332 22
Q ss_pred eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984 145 EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224 (380)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 224 (380)
.......+..+++.+++. ++++...++.|.+|+..+.............+..++++|+|+++++...++.|.+||...
T Consensus 103 ~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred ecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 222335688999998653 666666788999998765443332223334678899999999888888889999999877
Q ss_pred CcEEEEEEe-cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 225 GKHLHTLVH-NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 225 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
......... ...+..+++++++.... .....+.+..++................+.+++++|+|+.+++...+
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v------~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYV------TEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEE------EETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred CceEeecccCCCCceEEEECCCCCEEE------EECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 654433222 25577888888763211 11234567777765543322222223567899999999988888889
Q ss_pred CcEEEEecc
Q psy6984 304 KTIKLWNTL 312 (380)
Q Consensus 304 g~v~iw~~~ 312 (380)
+.|++++..
T Consensus 255 ~~v~~~~~~ 263 (270)
T 1rwi_B 255 DRVVKLTSL 263 (270)
T ss_dssp TEEEEECCC
T ss_pred CEEEEEcCC
Confidence 999999753
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=2.1e-13 Score=131.02 Aligned_cols=246 Identities=10% Similarity=0.060 Sum_probs=159.5
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc-------
Q psy6984 62 GHSHFISDIVLSSDGNYALSGSWDK-----TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT------- 129 (380)
Q Consensus 62 ~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~------- 129 (380)
+|...+..+.|||||++|+.+..++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555688999999999998776543 8999999998876643222 23667999999999999888766
Q ss_pred ---------EEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEEEEEeC-----CCeEEEEeCCC------ce-e
Q psy6984 130 ---------IKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-----DRMVKVWNLTN------CK-L 185 (380)
Q Consensus 130 ---------v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~------~~-~ 185 (380)
|.+|++.+... .......+...+..+.|+|+++. |+..+. +..|.+||+.+ +. .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 99999866442 22222234556788999998763 443332 57899999976 32 2
Q ss_pred eEeeeCCccceEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcE---EEEEEecC--ceEEEEeecCcccceeeeeee
Q psy6984 186 KINHSGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWDLNDGKH---LHTLVHND--IITALCFSPNRSFQKIKLDIS 256 (380)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~---~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~ 256 (380)
...+..+...+.. .++|+|+.|+..+.+ ..|.+||+.++.. ...+.+.. .+..++|++++.+....
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~---- 353 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY---- 353 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE----
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE----
Confidence 3334445444444 478888877665543 4699999987641 22233333 57778888554322111
Q ss_pred eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe-e---CCCcEEEEecccce
Q psy6984 257 RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS-S---RDKTIKLWNTLAHC 315 (380)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~---~dg~v~iw~~~~~~ 315 (380)
.......+++++...++....+..+...+..++++|+++.++.. + ..++|+.||+.++.
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 11122346677775565444444445567888999998766532 2 35789999876544
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=1.3e-13 Score=118.04 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=156.6
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984 60 LKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138 (380)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~ 138 (380)
+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+||..++
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 344556678999999998 7788888999999999877 5566667778999999999998888777889999997554
Q ss_pred ceEEEee--CC-CcCcEEEEEEccCCCCCEEEE----Ee-------------CCCeEEEEeCCCceeeEeeeCCccceEE
Q psy6984 139 CKFTIVE--DG-HSDWVSCVRFSPNHQNPIIVS----AG-------------WDRMVKVWNLTNCKLKINHSGHTGYLNT 198 (380)
Q Consensus 139 ~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s----~~-------------~d~~v~iwd~~~~~~~~~~~~~~~~i~~ 198 (380)
....... .. ....+..+++.|++. ++++ +. ..+.|..++.. .+. .....+...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~g 176 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNG 176 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCcc
Confidence 4332221 11 112356788988764 5665 22 13456666655 333 233455667889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECC-CCcE---EEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 199 VTVSPDGSLCASGGKDMNAMLWDLN-DGKH---LHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 199 ~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
++|+|+|+.+++.+.++.|++||+. +++. ...+ .....+..+++++++..... . .+.+.+|+.. ++
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~-------~-~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS-------A-GDGVHVLTPD-GD 247 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE-------E-TTEEEEECTT-SC
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE-------c-CCeEEEECCC-CC
Confidence 9999999988888888999999986 4543 1222 12334567778877653211 1 4567788775 54
Q ss_pred eeeeeeccccceeEEEE-eecCCEEEEeeCCC
Q psy6984 274 METPFFSLFRDVLSVAF-SVDNRQIVSSSRDK 304 (380)
Q Consensus 274 ~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg 304 (380)
....+..... +.+++| +|+++.|+.++.++
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 4444444444 889999 58999888888765
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=1.9e-13 Score=119.57 Aligned_cols=256 Identities=14% Similarity=0.151 Sum_probs=158.3
Q ss_pred cceEEEEeCCCCCCeEEEee---------CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC-
Q psy6984 17 GWVTQIATNPKFPDTILSCS---------RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK- 86 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~---------~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~- 86 (380)
..+....+ + ++.++... .++.|.+|++..... ..+ ..+..+.|+|||++|+..+.++
T Consensus 15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l----~~~~~~~~SpDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNAR------RFI----ENATMPRISPDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------EEE----ESCEEEEECTTSSEEEEEEEETT
T ss_pred EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCce------EEc----ccCCCeEECCCCCEEEEEEeccC
Confidence 45666666 3 45555432 256788888764321 112 4578899999999999877542
Q ss_pred ----cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEeC
Q psy6984 87 ----TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---------------------------KTIKLWNT 135 (380)
Q Consensus 87 ----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---------------------------~~v~iwd~ 135 (380)
.|++||+.+++.......+ . +..++|+|||+.|+.++.+ ..|.+||+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 4888899887766554433 3 8999999999998887642 56888988
Q ss_pred CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-------eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE
Q psy6984 136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-------MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC 208 (380)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 208 (380)
.++.....+.. . .+..+.|+|++ +++++..+. ...+|.+.+++... +..+ ..+..+ +|+|++|
T Consensus 160 ~~~~~~~~l~~--~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 160 ESEEVIEEFEK--P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MFEK-VSFYAV--DSDGERI 229 (347)
T ss_dssp TTTEEEEEEEE--E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EEEE-ESEEEE--EECSSCE
T ss_pred CCCeEEeeecC--C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCceEE-eccC-cceeeE--CCCCCEE
Confidence 76554122222 2 56788999976 566665432 33444333444322 2223 444444 9999988
Q ss_pred EEEcCC--------CcEEEEECCCCcEEEEEE-ecCceEE-EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984 209 ASGGKD--------MNAMLWDLNDGKHLHTLV-HNDIITA-LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF 278 (380)
Q Consensus 209 ~~~~~d--------~~i~i~d~~~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (380)
+.++.+ ..|++|| +++...... +...+.. +.|+ ++ .... ...++...+| +..++. ..+
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~------~~~~~~~~l~-~~~g~~-~~~ 297 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT------LFEEGSVNLY-IWDGEI-KPI 297 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE------EEETTEEEEE-EESSSE-EEE
T ss_pred EEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE------EecCCcEEEE-EcCCce-EEE
Confidence 877644 4688888 554333222 3455665 7887 65 2211 1123455666 554443 334
Q ss_pred eccccceeEEEEeecCCEEEEeeCCCcE-EEEec
Q psy6984 279 FSLFRDVLSVAFSVDNRQIVSSSRDKTI-KLWNT 311 (380)
Q Consensus 279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v-~iw~~ 311 (380)
......+.+++|+| ..+++++.++.. .+|..
T Consensus 298 ~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 298 AKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 44466788999999 677777777665 77754
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=2.5e-12 Score=111.88 Aligned_cols=230 Identities=9% Similarity=0.041 Sum_probs=157.3
Q ss_pred EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD- 85 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d- 85 (380)
+....+.++...+..++|.|+ +.+++++..++.|.+|+....... .....+...+.+++++++|+++++...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence 344567778788899999987 567778888999999987543211 1111345679999999999988877766
Q ss_pred ---CcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984 86 ---KTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 86 ---~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 154 (380)
+.|.+||..+++....+. .+...+.+++++|+|+.+++... .+.|..+|..+........ ....+..
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ 186 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANG 186 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEE
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccc
Confidence 689999998876553332 23456899999999988877654 2456666644333222211 2234778
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeE--------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984 155 VRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKI--------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 225 (380)
++++|+++. ++++...++.|.+||+.. ..... ...++ ..+..++++++|+++++...++.|.+||. .+
T Consensus 187 i~~~~dg~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g 263 (333)
T 2dg1_A 187 IALSTDEKV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG 263 (333)
T ss_dssp EEECTTSSE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred eEECCCCCE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence 999997642 445556678999999853 22111 11122 36788999999998888878899999998 56
Q ss_pred cEEEEEEecC-------ceEEEEeecCcc
Q psy6984 226 KHLHTLVHND-------IITALCFSPNRS 247 (380)
Q Consensus 226 ~~~~~~~~~~-------~i~~~~~~~~~~ 247 (380)
+.+..+.... .+..++|+|++.
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 264 YPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp CEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CEEEEEEcCCCccccccCcceEEECCCCC
Confidence 6666654432 478888888753
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=5.6e-14 Score=134.67 Aligned_cols=274 Identities=10% Similarity=-0.008 Sum_probs=168.1
Q ss_pred ccCCCEEEEEeCCC-----cEEEEECCCCceeeeec------ccCCCeEEEEEeCCCCEEE-----EEeCCCcEEEEeCC
Q psy6984 73 SSDGNYALSGSWDK-----TLRLWDLAAGKTTRRFE------DHTKDVLSVAFSVDNRQIV-----SSSRDKTIKLWNTL 136 (380)
Q Consensus 73 ~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~-----s~~~d~~v~iwd~~ 136 (380)
+|+|++++-...++ .|.+.+...++....+. +|...+..++|||||+++| .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888766543 35555655554333322 3445688999999999998 33445689999987
Q ss_pred CcceEEEeeCCCcCcE--EEEEEccCCCCCEEEEEeCCCe-------------EEEEeCCCce----eeEeeeCCccceE
Q psy6984 137 AHCKFTIVEDGHSDWV--SCVRFSPNHQNPIIVSAGWDRM-------------VKVWNLTNCK----LKINHSGHTGYLN 197 (380)
Q Consensus 137 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d~~-------------v~iwd~~~~~----~~~~~~~~~~~i~ 197 (380)
++.... ..+...+ ..++|+|+++ .|+.++.|.. |++|++.+.. ++.....+...+.
T Consensus 156 tg~~~~---~~~~~~~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSK---VDVIEGGKYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp TCCBCS---SCCBSCCTTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCCcC---CcccCcccccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 765420 1111222 5789999876 5666666655 9999998764 3333344556788
Q ss_pred EEEEcCCCCEEEEEcCCC----cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 198 TVTVSPDGSLCASGGKDM----NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 198 ~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
.+.++|||++++..+.++ .|++++..+++......+........+ +++. ..+. .........++++++.++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~--s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVL--TDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEE--ECTTCTTCEEEEEBTTBCS
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEE--ECCCCCCCEEEEEeCCCCC
Confidence 999999999988877666 778887766554444444444455545 4444 2111 1111234667778876654
Q ss_pred e--eeeeecc--ccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEE
Q psy6984 274 M--ETPFFSL--FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS 349 (380)
Q Consensus 274 ~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (380)
. ...+..+ ...+..++|+ ++..+++...|+..++|... ..+. ....+. ......+..
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~---------~~g~-~~~~l~--------~~~~~~v~~ 367 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT---------LKGK-PVRTVQ--------LPGVGAASN 367 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE---------TTCC-EEEECC--------CSSSSEECC
T ss_pred ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe---------CCCC-eeEEec--------CCCCeEEEE
Confidence 2 1233333 2346778887 77788888999999998542 1111 111111 011234556
Q ss_pred EEEecCCCEEEEEe----eCCeEEEEEee
Q psy6984 350 LAWSTDGQTLFAGY----SDNTIRVWQVS 374 (380)
Q Consensus 350 ~~~s~dg~~l~~g~----~dg~v~iw~~~ 374 (380)
++++||++.|+... ..+.|.+||+.
T Consensus 368 ~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 368 LMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp CBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred eecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 77899998776322 34678888874
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=4.7e-11 Score=101.88 Aligned_cols=274 Identities=9% Similarity=0.011 Sum_probs=177.3
Q ss_pred CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984 64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142 (380)
Q Consensus 64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~ 142 (380)
...+.++.+.++|+..++...++.|.+||.. ++... .+......+.++++++++...++...++.|..+|.. +....
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 4567899999999988887778999999987 55443 222334578899999999988877778889999876 33322
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee-EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK-INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 221 (380)
.........+.++++.+++. ++++...++.|..+|.. .+.. .........+..++++++|+++++...++.|..+|
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 22222335688899987653 66666667899999987 4433 22233345789999999999877777788999999
Q ss_pred CCCCcEEEEEEe---cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEeecCCEE
Q psy6984 222 LNDGKHLHTLVH---NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSVDNRQI 297 (380)
Q Consensus 222 ~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l 297 (380)
. +++... +.. ...+..+++.+++..... ......+..++. .++... ........+.+++++++|+.+
T Consensus 174 ~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 174 N-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV------EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIW 244 (300)
T ss_dssp T-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred C-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE------ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEE
Confidence 8 555433 221 234677888776543211 112334666665 333222 122234567899999999977
Q ss_pred EEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 298 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
++...++.|..|+. .+. +..+. .. .....+.+++..++|+++++.. + .|..++.
T Consensus 245 v~~~~~~~i~~~~~-~g~-~~~~~---------~~---------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNT-IQEYQ---------LQ---------TENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEETTTTEEEEECT-TSC-EEEEE---------CC---------STTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EeccCCCeEEEECC-CCc-EEEEE---------CC---------ccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 77666788998875 221 11110 00 0112245788899999777554 4 5655554
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=1.9e-12 Score=110.67 Aligned_cols=221 Identities=15% Similarity=0.165 Sum_probs=154.3
Q ss_pred EecCcccceEEEEeCCCCCC-eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984 11 TLNGHNGWVTQIATNPKFPD-TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR 89 (380)
Q Consensus 11 ~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 89 (380)
.+..+......++|+|+ ++ +++++..++.|..|+.... ...+..+...+.+++++++|+++++...++.|.
T Consensus 22 ~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ-------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp EEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC-------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred EEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC-------eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 44456677889999998 45 7888888999999987643 122334556789999999999888877778999
Q ss_pred EEECCCCceeeeeccc----CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCcceEEEeeCCC
Q psy6984 90 LWDLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVSSSR-----------------DKTIKLWNTLAHCKFTIVEDGH 148 (380)
Q Consensus 90 vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~ 148 (380)
+||..+++........ ...+.+++++|+|+.+++.+. .+.|..++.. +. ..... .+
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~-~~ 170 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI-RD 170 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-CC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-cC
Confidence 9999887755433221 124567999999998887321 3455555543 22 22222 34
Q ss_pred cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC-Ccee---eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984 149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT-NCKL---KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224 (380)
Q Consensus 149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 224 (380)
......++|+|+++ .+++.+.++.|.+|++. ++++ ...+..+...+..++++++|+++++. ++.|.+||..
T Consensus 171 ~~~~~gi~~s~dg~--~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 171 RVKPNGLAFLPSGN--LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CSSEEEEEECTTSC--EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CCCCccEEECCCCC--EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 45678899999865 45777778999999986 3333 11223345567789999999977666 7899999986
Q ss_pred CcEEEEEEecCceEEEEee-cCcc
Q psy6984 225 GKHLHTLVHNDIITALCFS-PNRS 247 (380)
Q Consensus 225 ~~~~~~~~~~~~i~~~~~~-~~~~ 247 (380)
++.+..+..+..+.+++|. |++.
T Consensus 246 g~~~~~~~~~~~~~~~~f~~~d~~ 269 (296)
T 3e5z_A 246 GDELGRVLTPQTTSNLCFGGPEGR 269 (296)
T ss_dssp SCEEEEEECSSCCCEEEEESTTSC
T ss_pred CCEEEEEECCCCceeEEEECCCCC
Confidence 7777666554448888884 6554
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=1.9e-12 Score=109.26 Aligned_cols=214 Identities=9% Similarity=-0.003 Sum_probs=152.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS 153 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 153 (380)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.+++++|+|+.++ +.++.|..||. ++........+....+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 36789999999999999999999999988765 4688999999999888 45778999997 55555544433334678
Q ss_pred EEEEccCCCCCEEEEEeC-CCeEEEEeCCCceeeEeee------CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984 154 CVRFSPNHQNPIIVSAGW-DRMVKVWNLTNCKLKINHS------GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK 226 (380)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 226 (380)
++.+.+++. ++++.+. ++.|..+|. +++...... .+......+++.++|+++++...++.|..||.. ++
T Consensus 81 ~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 81 TARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 888888764 6777666 777877876 444433332 122244556789999999999999999999998 99
Q ss_pred EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc------ccceeEEEEeecCCEEEEe
Q psy6984 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL------FRDVLSVAFSVDNRQIVSS 300 (380)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~ 300 (380)
.+..+.....+..+...+++...... ...+.+..++..+++..-.+... ...+..++..++|..+++.
T Consensus 157 ~~w~~~~~~~~~~~~~~~~g~~~v~~------~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLDNGDCLVAC------GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEEC------BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEEECCCCccceeEcCCCCEEEEe------CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 98888766666666666665443221 12344666666666654443321 1236678888899988876
Q ss_pred e
Q psy6984 301 S 301 (380)
Q Consensus 301 ~ 301 (380)
.
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=6.3e-11 Score=101.07 Aligned_cols=278 Identities=8% Similarity=0.014 Sum_probs=180.5
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 91 (380)
+......+.+|...++ +.++++...++.|.+|+.. .... ...+..+...+..+++.+++++.++...++.|..|
T Consensus 15 ~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 15 LSIPDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIK----EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL 88 (300)
T ss_dssp CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred cCCCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceE----EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence 4455668899999887 5677776678999999865 2111 11122334568899999999988877778899999
Q ss_pred ECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984 92 DLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG 170 (380)
Q Consensus 92 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 170 (380)
|.. ++... ........+.++++++++..+++...++.|..+|.. +.............+.++++.+++. ++++..
T Consensus 89 d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~ 164 (300)
T 2qc5_A 89 SKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA--LWFTEN 164 (300)
T ss_dssp CTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS--EEEEET
T ss_pred CCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC--EEEEec
Confidence 987 55432 222234568899999999988887778889999876 3332222222345678899988654 566666
Q ss_pred CCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE--ecCceEEEEeecCcc
Q psy6984 171 WDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--HNDIITALCFSPNRS 247 (380)
Q Consensus 171 ~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~~~~~~ 247 (380)
.++.|..+|. +.+... ....+...+..++++++|+++++....+.|.+||. +++...... ....+..+++.+++.
T Consensus 165 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 165 QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence 6788999998 444332 22234456889999999988887777888999998 554433221 234567888887764
Q ss_pred cceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 248 FQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
.... ....+.+..++.. ++... ........+.+++++++|+.+++.. . .|..++
T Consensus 243 l~v~------~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 243 IWFT------EWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEE------ETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEEe------ccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 2211 1123456666653 33221 1222234577889999988766654 3 554443
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=1.4e-11 Score=114.09 Aligned_cols=301 Identities=14% Similarity=0.110 Sum_probs=188.8
Q ss_pred ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecC--CCCCCcccccccccCCCcceEEEEEc----cCC
Q psy6984 3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLT--RDDTNYGVPQKRLKGHSHFISDIVLS----SDG 76 (380)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~ 76 (380)
.++.++..++.. ...+..+.++|+ ++++++++.|+.|.+||+. .... ...+... .....++|+ |||
T Consensus 184 ~~t~~v~~~i~~-g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~-----v~~i~~G-~~P~~ia~s~~~~pDG 255 (567)
T 1qks_A 184 GSTYEIKTVLDT-GYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTT-----VAEIKIG-SEARSIETSKMEGWED 255 (567)
T ss_dssp TTTCCEEEEEEC-SSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCE-----EEEEECC-SEEEEEEECCSTTCTT
T ss_pred CCCCeEEEEEeC-CCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcE-----eEEEecC-CCCceeEEccccCCCC
Confidence 445556666653 235668999998 6888889999999999984 2211 1122221 235689999 699
Q ss_pred CEEEEEeC-CCcEEEEECCCCceeeeecc----------cCC-CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEE
Q psy6984 77 NYALSGSW-DKTLRLWDLAAGKTTRRFED----------HTK-DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 77 ~~l~s~~~-d~~i~vwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~ 143 (380)
++++++.. ++.|.|+|..+.+.+..+.. |.. .+..+..++++..++ +...+|.|.++|......+..
T Consensus 256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v 335 (567)
T 1qks_A 256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 335 (567)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee
Confidence 99887765 58999999999888776542 222 577888888876554 455668999998654332222
Q ss_pred eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-----CccceEEEEEcCCCC-EEEEEc-CCCc
Q psy6984 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-----HTGYLNTVTVSPDGS-LCASGG-KDMN 216 (380)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~~~~-~l~~~~-~d~~ 216 (380)
..........++.|+|+++. ++++...++.|.++|+.+.++.....- |.+.-.. .++|++. .++++. .++.
T Consensus 336 ~~i~~~~~~~d~~~~pdgr~-~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 336 TEISAERFLHDGGLDGSHRY-FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp EEEECCSSEEEEEECTTSCE-EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSE
T ss_pred eeeeccccccCceECCCCCE-EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCe
Confidence 22223345778899998653 445555678999999999876554432 3221112 2588744 445553 4689
Q ss_pred EEEEECCC-------CcEEEEEEecCc-eEEEEeecCcccceeeeeeeee-ccccceEEEEcCCc-----eee-eeee--
Q psy6984 217 AMLWDLND-------GKHLHTLVHNDI-ITALCFSPNRSFQKIKLDISRT-LQKSNLILYPINHG-----KME-TPFF-- 279 (380)
Q Consensus 217 i~i~d~~~-------~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~-~~~~-- 279 (380)
|.++|... -+.+..+..... ...+..+|++++.-+....... .....+.++++.+. ... ..+.
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~ 493 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 493 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc
Confidence 99999987 456666654332 2345678887654332211100 01357888888755 111 1110
Q ss_pred ------ccccceeEEEEeecCCEEEEee-----CCCcEEEEeccc
Q psy6984 280 ------SLFRDVLSVAFSVDNRQIVSSS-----RDKTIKLWNTLA 313 (380)
Q Consensus 280 ------~~~~~v~~~~~s~~~~~l~s~~-----~dg~v~iw~~~~ 313 (380)
.....+..+.|+|+|+++..+. .++.|.++|..+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 494 EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp HHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 1134678899999999876542 267787776543
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=9.2e-13 Score=126.63 Aligned_cols=248 Identities=11% Similarity=0.010 Sum_probs=158.9
Q ss_pred CcccceEEEEeCCCCCCeEEEeeCCC-----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc-
Q psy6984 14 GHNGWVTQIATNPKFPDTILSCSRDN-----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT- 87 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~t~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~- 87 (380)
+|...+..+.|+|+ +++|+.++.++ +|++||+...... ..... ...+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~----~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKEL----PDVLE--RVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEE----EEEEE--EECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCC----ccccc--CcccceEEEEeCCCEEEEEEECCcc
Confidence 35557889999998 57777655433 8999998654211 11111 122567999999999999988766
Q ss_pred ---------------EEEEECCCCcee--eee--cccCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCC------
Q psy6984 88 ---------------LRLWDLAAGKTT--RRF--EDHTKDVLSVAFSVDNRQIVSSSR-----DKTIKLWNTLA------ 137 (380)
Q Consensus 88 ---------------i~vwd~~~~~~~--~~~--~~h~~~v~~~~~~~~~~~~~s~~~-----d~~v~iwd~~~------ 137 (380)
|++|++.+++.. ..+ ..|...+..+.|+|||++++.++. +..+.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999887632 222 234555789999999999887764 56899999764
Q ss_pred cc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCCcee--eEeeeCCcc--ceEEEEEcCCCCEEE
Q psy6984 138 HC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKL--KINHSGHTG--YLNTVTVSPDGSLCA 209 (380)
Q Consensus 138 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~l~ 209 (380)
+. ....+. .+...+.. .++|+++. +++.+.. +..|.+||+.+... ...+..|.. .+..+.+++++.+++
T Consensus 275 ~~~~~~~l~-~~~~~~~~-~~s~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 275 GILKWVKLI-DNFEGEYD-YVTNEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SSCCCEEEE-CSSSSCEE-EEEEETTE-EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred CccceEEee-CCCCcEEE-EEeccCCE-EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 31 222332 23333433 46776653 3333332 34799999987531 122333333 678889988888888
Q ss_pred EEcCCCc--EEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 210 SGGKDMN--AMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 210 ~~~~d~~--i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
+...|+. |++||+.+++.+..+. +...+..+.++|++....+. .........++.|++.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~--~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ--FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE--EECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE--EeCCCCCCEEEEEECCCCc
Confidence 8888874 5667876777666654 34567778888876433222 2222334567788877665
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1e-12 Score=126.01 Aligned_cols=247 Identities=11% Similarity=-0.010 Sum_probs=157.6
Q ss_pred CcccceEEEEeCCCCCCeEE-----EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc-
Q psy6984 14 GHNGWVTQIATNPKFPDTIL-----SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT- 87 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~-----t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~- 87 (380)
+|...+..+.|+|+ +++|| +|+.+.+|++||+...... ....+... ....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~---~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWS---KVDVIEGG--KYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBC---SSCCBSCC--TTCCCEECTTSSEEEEEECCCCT
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCc---CCcccCcc--cccceEEecCCCEEEEEEecCCC
Confidence 56667999999998 67777 4555678999998764321 01111111 1257899999999999998776
Q ss_pred ------------EEEEECCCCce----eeeecccCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCcceEEEeeCC
Q psy6984 88 ------------LRLWDLAAGKT----TRRFEDHTKDVLSVAFSVDNRQIVSSSRDK----TIKLWNTLAHCKFTIVEDG 147 (380)
Q Consensus 88 ------------i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~----~v~iwd~~~~~~~~~~~~~ 147 (380)
|++|++.+++. +.....|...+..+.|+|||++++.++.++ .+.+|+........+..
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-- 269 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-- 269 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--
Confidence 99999988763 222234556788999999999988877665 66667654333222222
Q ss_pred CcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCcee---eEeeeCC-ccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984 148 HSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCKL---KINHSGH-TGYLNTVTVSPDGSLCASGGKDMNAMLW 220 (380)
Q Consensus 148 ~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 220 (380)
+...+....+ +++. +++... .++.|.+||+.+... ......+ ...+..++++ ++.++++...|+..++|
T Consensus 270 ~~~~~~~~~~-~~g~--l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR--FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp CSSCCEEEEE-ETTE--EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEe-cCCc--EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 2333444555 4444 455444 358899999977542 2223333 4467788888 67788889999988887
Q ss_pred ECC-CCcEEEEEEe--cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984 221 DLN-DGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM 274 (380)
Q Consensus 221 d~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (380)
.+. .++....+.. ...+..+.++|++....+.. ........+++|++.+++.
T Consensus 346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~--ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF--TSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE--EETTEEEEEEEEETTTCCE
T ss_pred EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE--cCCCCCCEEEEEECCCCcE
Confidence 654 3555555543 34566777777764433222 2222335677888776653
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=5.9e-11 Score=104.51 Aligned_cols=273 Identities=8% Similarity=-0.035 Sum_probs=161.4
Q ss_pred CCeEEEeeC--CC---eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEEC
Q psy6984 29 PDTILSCSR--DN---TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDL 93 (380)
Q Consensus 29 ~~~l~t~~~--dg---~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~ 93 (380)
+.+++.+.. .. +|.++|....... ..+..-... .+.++|||++|+.+. .++.|.+||.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEE-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 556665542 33 7899987643321 122211122 799999999999886 3678999999
Q ss_pred CCCceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEE-eeCCCcCcEEEEEEccCCCC
Q psy6984 94 AAGKTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQN 163 (380)
Q Consensus 94 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 163 (380)
.+.+.+..+..- ......++|+|||++++.+.. ++.|.++| .+...... +..+ .|+.+.|.+..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-----~~~~~~~~~~~ 178 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-----TCYHIHPGAPS 178 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-----ceEEEEeCCCc
Confidence 988777665321 123457899999999998874 57899999 76655433 3211 23555666554
Q ss_pred CEEEEEeCCCeEEEEeCCCceeeEeee-----CCccc-eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE--EEEEec-
Q psy6984 164 PIIVSAGWDRMVKVWNLTNCKLKINHS-----GHTGY-LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL--HTLVHN- 234 (380)
Q Consensus 164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~- 234 (380)
.+++.+.|+.+.++|. +.+...... ....+ .....+.+++..++..+..+.+.+.|+...... ..+...
T Consensus 179 -~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 179 -TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred -eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 4566778999999999 665442211 11111 122445666555444447788999988654311 111000
Q ss_pred CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC----------CC
Q psy6984 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR----------DK 304 (380)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------dg 304 (380)
.......|.| .....++++|+++.++.+.. ++
T Consensus 257 ~~~~~~~~~p--------------------------------------~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 257 GGRKADTWRP--------------------------------------GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred Ccccccceec--------------------------------------CceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 0000011111 11234677888887766543 23
Q ss_pred cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEe-eCCeEEEEEeee
Q psy6984 305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVSV 375 (380)
Q Consensus 305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~~ 375 (380)
.|.+.| .++.+.+..+... .....++|+|||+ .++++. .++.|.++|+..
T Consensus 299 ~V~VID-----------~~t~~vv~~i~~g----------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 299 EVTSVT-----------GLVGQTSSQISLG----------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred eEEEEE-----------CCCCEEEEEEECC----------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 455554 4444444433211 1235789999999 777776 589999999753
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=5.8e-12 Score=106.23 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=141.8
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC-
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT- 106 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~- 106 (380)
+++|++++.|+.|.+||....... ..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+.++..+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIV-----WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEE-----EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEE-----EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCC
Confidence 468999999999999997544322 2233333 3578899999999888 45778999999 788888887643
Q ss_pred CCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcceEEEee-C----CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984 107 KDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVE-D----GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 180 (380)
..+.++.+.++|+.+++.+. ++.+..+|... ....... . .+......+++.+++ .++++...++.|..||.
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKG--NYLVPLFATSEVREIAP 153 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEECT
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCC--CEEEEecCCCEEEEECC
Confidence 46888999999999999887 77787777533 3222221 1 111223445566654 47888888999999999
Q ss_pred CCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
. ++....+... ..+.++...++|++++++..+++|..+|..+++.+..+.
T Consensus 154 ~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 154 N-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp T-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred C-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 8 7777666543 345677889999999999999999999999999888875
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=6.6e-12 Score=105.63 Aligned_cols=220 Identities=7% Similarity=-0.051 Sum_probs=147.8
Q ss_pred ceEEEEeCCCCCCeEE-EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984 18 WVTQIATNPKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~-t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 96 (380)
....+++.++ +++++ +.+.++.|.+|+....... .....+...+.+++++++|+++++.. ++.|.+||....
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTT-----VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC-----E-----ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCcccc-----eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence 6778999887 56666 5467889999986432111 00122334577899999999666655 889999998765
Q ss_pred ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK 176 (380)
Q Consensus 97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 176 (380)
............+.+++++++|..+++...++.|.+|+..+..... ........+.++++.+++. ++++...++.|.
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~ 174 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVV 174 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCCEEECTTCC--EEEEEGGGTEEE
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCceeEEEeCCCC--EEEEECCCCEEE
Confidence 4432222233568899999999988887788899999754432221 1122233567889988653 666666678999
Q ss_pred EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcc
Q psy6984 177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRS 247 (380)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~ 247 (380)
+||............+...+..++++++|.++++...++.|.+||........... ....+..+++++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence 99988765443333334668899999999888888888999999986654332211 124577888887764
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=3.6e-12 Score=110.57 Aligned_cols=231 Identities=12% Similarity=0.093 Sum_probs=149.3
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS 81 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 81 (380)
++++.++..++.. ......++++++ +..+++...++.|.+||.........++.....++......+++ ++..|+.
T Consensus 70 D~~t~~~~~~i~~-~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv 145 (328)
T 3dsm_A 70 DINTFKEVGRITG-FTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYV 145 (328)
T ss_dssp ETTTCCEEEEEEC-CSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE
T ss_pred ECcccEEEEEcCC-CCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEE
Confidence 4455666666643 456788888776 44444444789999999764322111111110111123455666 3455555
Q ss_pred Ee--CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCcceEEEeeCCCc
Q psy6984 82 GS--WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD----------KTIKLWNTLAHCKFTIVEDGHS 149 (380)
Q Consensus 82 ~~--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----------~~v~iwd~~~~~~~~~~~~~~~ 149 (380)
+. .++.|.++|+.+++....+... .....++++|+|++++++..+ +.|.++|..+......+.....
T Consensus 146 ~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 146 NCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp EECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred EcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 54 4889999999999887776542 345678999999877776654 7899999876554433332222
Q ss_pred CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe--eeCCccceEEEEEcC-CCCEEEEE----cCCCcEEEEEC
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSP-DGSLCASG----GKDMNAMLWDL 222 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~----~~d~~i~i~d~ 222 (380)
.....++++|+++ .|+.+.. .|.+||..+.+.... .......+..++++| +++++++. ..++.|.+||.
T Consensus 225 ~~p~~la~~~d~~--~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 225 DWPSEVQLNGTRD--TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp CCCEEEEECTTSC--EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred CCceeEEEecCCC--EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 3578999999765 4544433 899999987665321 111235688999999 56666666 67899999999
Q ss_pred CCCcEEEEEEecCceEEEEe
Q psy6984 223 NDGKHLHTLVHNDIITALCF 242 (380)
Q Consensus 223 ~~~~~~~~~~~~~~i~~~~~ 242 (380)
. ++.+..+........++|
T Consensus 301 ~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 301 Q-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp T-CCEEEEEEEEESEEEEEE
T ss_pred C-CCEEEEEEeccCcceEEE
Confidence 8 888877765554444443
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=4.7e-12 Score=122.23 Aligned_cols=275 Identities=12% Similarity=0.031 Sum_probs=158.0
Q ss_pred ccCCCEEEEEeCCC-----cEEEEECC---CCceeeee------cccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEE
Q psy6984 73 SSDGNYALSGSWDK-----TLRLWDLA---AGKTTRRF------EDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLW 133 (380)
Q Consensus 73 ~~~~~~l~s~~~d~-----~i~vwd~~---~~~~~~~~------~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iw 133 (380)
+|+|++++....++ .|.+.+.. .++....+ .+|...+..++|||||+++|.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999888665443 34444544 33332221 2233367889999999999876654 369999
Q ss_pred eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--------------eEEEEeCCCce----eeEeeeCCccc
Q psy6984 134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--------------MVKVWNLTNCK----LKINHSGHTGY 195 (380)
Q Consensus 134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--------------~v~iwd~~~~~----~~~~~~~~~~~ 195 (380)
|+.++....... +...+..++|+|+ + .|+.+..++ .|++|++.+.. +......+...
T Consensus 195 dl~tg~~~~~~~--~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 195 GVADGKPLADEL--KWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp ETTTCCEEEEEE--EEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred ECCCCCCCCccC--CCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 987765543211 1111246889998 5 344444443 38999987654 22222333345
Q ss_pred eEEEEEcCCCCEEEEEcCC-----CcEEEEECCCC--cEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984 196 LNTVTVSPDGSLCASGGKD-----MNAMLWDLNDG--KHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267 (380)
Q Consensus 196 i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (380)
+..+.++|||++|+..+.+ ..|++||+.++ +....+ ......... ++|++....+... .......++++
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~--~~~~~~~l~~~ 346 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSG--DGAPLKKIVRV 346 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEEC--TTCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEEC--CCCCCCEEEEE
Confidence 7889999999998877654 38999999876 302333 233333333 3465543222211 11224557788
Q ss_pred EcCCc--eeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984 268 PINHG--KMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP 345 (380)
Q Consensus 268 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
+...+ .....+..+...+..++++ ++..+++...|+..++|... ..+. ....+. .....
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~---------~~g~-~~~~l~--------~~~~~ 407 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD---------LDGK-PAGAVS--------LPGIG 407 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE---------TTSC-EEEECB--------CSSSC
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe---------CCCC-ceeecc--------CCCCe
Confidence 87763 3332222223345567776 66778888889998888532 1111 111111 11233
Q ss_pred ceEEEEEecCCCEEEE-Ee---eCCeEEEEEee
Q psy6984 346 MCLSLAWSTDGQTLFA-GY---SDNTIRVWQVS 374 (380)
Q Consensus 346 ~~~~~~~s~dg~~l~~-g~---~dg~v~iw~~~ 374 (380)
.+..++++||++.|+. .+ ..+.|..||+.
T Consensus 408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 4667889999886663 22 35678888864
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=5.7e-11 Score=102.20 Aligned_cols=206 Identities=9% Similarity=0.077 Sum_probs=131.8
Q ss_pred cCcccceEEEEeCCCCCCeEEE-------eeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeC
Q psy6984 13 NGHNGWVTQIATNPKFPDTILS-------CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSW 84 (380)
Q Consensus 13 ~~h~~~v~~i~~~~~~~~~l~t-------~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~ 84 (380)
.+.-.....++|.++ +.++++ ...++.|.+|+....... ........++...+..++++++ ++++++. .
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVAD-M 90 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEE-T
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEE-C
Confidence 444556788999876 567777 577899999986543211 0100001224456889999999 6544444 4
Q ss_pred CCcEEEEECCCCceeee-ecc----cCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEeCCCcceEEEe
Q psy6984 85 DKTLRLWDLAAGKTTRR-FED----HTKDVLSVAFSVDNRQIVSSSRD---------------KTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~s~~~d---------------~~v~iwd~~~~~~~~~~ 144 (380)
+..|.+||.. ++.... ... ....+.+++++++|+..++...+ +.|..|+.. +......
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 4579999988 665433 221 12347899999999888777655 567777654 2222221
Q ss_pred eCCCcCcEEEEEEc----cCCCCCEEEEEeCCCeEEEEeCC-Ccee-----eEeeeCCc-cceEEEEEcCCCCEEEEEcC
Q psy6984 145 EDGHSDWVSCVRFS----PNHQNPIIVSAGWDRMVKVWNLT-NCKL-----KINHSGHT-GYLNTVTVSPDGSLCASGGK 213 (380)
Q Consensus 145 ~~~~~~~v~~~~~~----~~~~~~~l~s~~~d~~v~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~~~~~~~l~~~~~ 213 (380)
.+......++++ |+++ .++++...++.|.+||+. +++. .....++. ..+..++++++|+++++...
T Consensus 169 --~~~~~~~~i~~~~~~d~dg~-~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 --TAFQFPNGIAVRHMNDGRPY-QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp --EEESSEEEEEEEECTTSCEE-EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred --cCCCCcceEEEecccCCCCC-EEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 122345788888 7653 244555667899999976 3331 12223333 56788999999998888878
Q ss_pred CCcEEEEECCCCc
Q psy6984 214 DMNAMLWDLNDGK 226 (380)
Q Consensus 214 d~~i~i~d~~~~~ 226 (380)
++.|.+||..+++
T Consensus 246 ~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 246 SSHIEVFGPDGGQ 258 (314)
T ss_dssp TTEEEEECTTCBS
T ss_pred CCEEEEEcCCCCc
Confidence 8899999876554
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=1.2e-10 Score=100.13 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=150.6
Q ss_pred CCeEEEEEeCCCCEEEE-------EeCCCcEEEEeCCCcceEEEee---CCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984 107 KDVLSVAFSVDNRQIVS-------SSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK 176 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s-------~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 176 (380)
....+++|++++..+++ +..++.|..||..++....... .++...+.++++.+++. .++.++....|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEECCCCEE
Confidence 45678999999988877 5778899999965544332221 12445688899988621 244444455899
Q ss_pred EEeCCCceeeEe-eeC----CccceEEEEEcCCCCEEEEEcCC---------------CcEEEEECCCCcEEEEEEecCc
Q psy6984 177 VWNLTNCKLKIN-HSG----HTGYLNTVTVSPDGSLCASGGKD---------------MNAMLWDLNDGKHLHTLVHNDI 236 (380)
Q Consensus 177 iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~ 236 (380)
+||.. ++.... ... ....+..++++|+|+++++...+ +.|..+|.. ++..........
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~ 173 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF 173 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence 99988 554322 211 12357899999999988877655 578888776 554443344445
Q ss_pred eEEEEee----cCcccceeeeeeeeeccccceEEEEcC-Cceee-----eeeeccc-cceeEEEEeecCCEEEEeeCCCc
Q psy6984 237 ITALCFS----PNRSFQKIKLDISRTLQKSNLILYPIN-HGKME-----TPFFSLF-RDVLSVAFSVDNRQIVSSSRDKT 305 (380)
Q Consensus 237 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~ 305 (380)
...++++ |++....+. ......+.+|+.. .++.. ..+..+. .....++++++|+++++...++.
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~-----~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVA-----ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEE-----ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cceEEEecccCCCCCEEEEE-----ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 6788888 876432111 1224556677654 33321 1111111 44678999999998888778889
Q ss_pred EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-EeeCCeEEEEEeee
Q psy6984 306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-GYSDNTIRVWQVSV 375 (380)
Q Consensus 306 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-g~~dg~v~iw~~~~ 375 (380)
|..|+..++.....+. .....+.+++++|+|+.|++ ...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~--------------------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIR--------------------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEE--------------------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEe--------------------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999764222111110 01134678899999995554 44567899998764
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=1.4e-10 Score=99.04 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=151.4
Q ss_pred eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL 88 (380)
Q Consensus 9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 88 (380)
...+..+...--...|+|....++++...++.|..|+...... . .......+.+++++++|+++++ . +..|
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l 75 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------Q-RVTMDAPVSSVALRQSGGYVAT-I-GTKF 75 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------E-EEECSSCEEEEEEBTTSSEEEE-E-TTEE
T ss_pred EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------E-EEeCCCceEEEEECCCCCEEEE-E-CCeE
Confidence 3445555666778889986556677777789999998764321 1 1123356889999999995554 4 5689
Q ss_pred EEEECCCCceeeeecc----cCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984 89 RLWDLAAGKTTRRFED----HTKDVLSVAFSVDNRQIVSSSRD---------KTIKLWNTLAHCKFTIVEDGHSDWVSCV 155 (380)
Q Consensus 89 ~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 155 (380)
.+||..+++....... ....+.+++++|+|++.++...+ ..-.+|............ ......+.+
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi 154 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGL 154 (297)
T ss_dssp EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEE
T ss_pred EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccce
Confidence 9999988765433221 12347889999999977655322 223455433222222111 123346789
Q ss_pred EEccCCCCCEEEEEeCCCeEEEEeCC--Ccee-----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 156 RFSPNHQNPIIVSAGWDRMVKVWNLT--NCKL-----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 156 ~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
+|+|+++. ++++.+.++.|..|++. ++.+ ......+...+..++++++|++.++....+.|..||..+++.+
T Consensus 155 ~~spdg~~-lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 155 DWSLDHKI-FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EECTTSCE-EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EEcCCCCE-EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 99998653 45566678899999873 4332 1122233456889999999998888878889999999989988
Q ss_pred EEEEec-CceEEEEee-cCcc
Q psy6984 229 HTLVHN-DIITALCFS-PNRS 247 (380)
Q Consensus 229 ~~~~~~-~~i~~~~~~-~~~~ 247 (380)
..+..+ ..+++++|. |+..
T Consensus 234 ~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp EEEECSSSBEEEEEEESGGGC
T ss_pred EEEECCCCCceEEEEeCCCCC
Confidence 877655 578899998 6643
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=1.2e-12 Score=114.57 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=130.8
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC-----CcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEE
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT-----NYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD 92 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 92 (380)
.++.+++++. ..++++|+.+ .+++|++..... ...........+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 5888999988 4688888887 666798653210 00011112234555 999999 89999999 889999999
Q ss_pred CCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 93 LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 93 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
+.+.........|..++.++.+.+. .+++++.||.+.+||+....... +...|.|++|+|++ ++.|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG----~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ----LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE----EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc----eEEEEcC
Confidence 9876665566677788888887654 38899999999999987654432 33469999999976 5678899
Q ss_pred CeEEEEeCCCcee--eEee------e---CCccceEEEEEcCCCCEEEE
Q psy6984 173 RMVKVWNLTNCKL--KINH------S---GHTGYLNTVTVSPDGSLCAS 210 (380)
Q Consensus 173 ~~v~iwd~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~ 210 (380)
|.+++|+....+. ...+ . +|...|.++.|.+++.++++
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999998877664 3333 2 36788999999999988875
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=4.2e-11 Score=115.61 Aligned_cols=243 Identities=12% Similarity=0.019 Sum_probs=144.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeCC-----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc-------
Q psy6984 62 GHSHFISDIVLSSDGNYALSGSWD-----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT------- 129 (380)
Q Consensus 62 ~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~------- 129 (380)
+|...+..+.|||||++|+.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 444568889999999999877654 35999999998876531 12222357899999 99988877654
Q ss_pred -------EEEEeCCCcc---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC-----CCeEEEEeCCCc--eeeEeeeCC
Q psy6984 130 -------IKLWNTLAHC---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-----DRMVKVWNLTNC--KLKINHSGH 192 (380)
Q Consensus 130 -------v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~--~~~~~~~~~ 192 (380)
|.+|++.+.. ........+...+..+.++|+++. |+..+. ...|.+||+.+. +....+..+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 8888875543 222222233346889999998763 444333 348999999765 302333334
Q ss_pred ccceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCc-EEEEE-E-ecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984 193 TGYLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGK-HLHTL-V-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLI 265 (380)
Q Consensus 193 ~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (380)
....... ++|+|+.|+..+. ++.|.+||+.++. ....+ . +...+..+.++.+ .. ... ........++
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~-~l-v~~---~~~dg~~~l~ 389 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGN-RL-FAS---YIHDAKSQVL 389 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBT-EE-EEE---EEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECC-EE-EEE---EEECCEEEEE
Confidence 4334444 3488888777665 3569999998752 33333 2 2334555666522 11 111 1111122344
Q ss_pred EEEcCCceeeeeee-ccccceeEEEEeecCCEEEE----eeCCCcEEEEecccce
Q psy6984 266 LYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVS----SSRDKTIKLWNTLAHC 315 (380)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s----~~~dg~v~iw~~~~~~ 315 (380)
+++.. ++....+. .....+..+.++|+++.|+. ....++|+.||+.++.
T Consensus 390 ~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 390 AFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55543 33322232 23456778899999886662 2335789999876543
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=5.4e-10 Score=98.34 Aligned_cols=255 Identities=7% Similarity=-0.013 Sum_probs=149.4
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCccccc---ccccCCCcceE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQ---KRLKGHSHFIS 68 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~---~~~~~h~~~v~ 68 (380)
+..+.++..++..-..+ .+.++|+ +++++.+. .++.|.+||.........++. .+.. +.....
T Consensus 53 D~~t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~ 128 (373)
T 2mad_H 53 DAGSGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSW 128 (373)
T ss_pred ECCCCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-cCCCcc
Confidence 34556667777643444 8999998 56666664 367899999764322211111 0010 112345
Q ss_pred EEEEccCCCEEEEEeC--CCcEEEEECCCCceeee-ecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984 69 DIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 69 ~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~ 144 (380)
.+.++|||++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|++ ..+++.+.|+.+.++|. ........
T Consensus 129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 7899999999998874 47899999 99988776 532 12 24555665 45667778999999998 54433221
Q ss_pred e-----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee--EeeeC----------CccceEEEEEcCCCCE
Q psy6984 145 E-----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK--INHSG----------HTGYLNTVTVSPDGSL 207 (380)
Q Consensus 145 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~ 207 (380)
. .+.........+.+++.. +++.. .++.+.+.|+...... ..+.- .......+.++|+++.
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred eccccccCCcceeecceeEecCCE-EEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 1 111111122344554432 33333 5778999998654321 11110 0112333667777776
Q ss_pred EEEEcC----------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984 208 CASGGK----------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277 (380)
Q Consensus 208 l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (380)
+.++.. ++.|.++|..+.+.+..+...
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g------------------------------------------- 317 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------------------------------------------- 317 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-------------------------------------------
Confidence 655432 245777776666554433211
Q ss_pred eeccccceeEEEEeecCC-EEEEee-CCCcEEEEeccccee
Q psy6984 278 FFSLFRDVLSVAFSVDNR-QIVSSS-RDKTIKLWNTLAHCK 316 (380)
Q Consensus 278 ~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~ 316 (380)
.....++|+|||+ .++++. .++.|.++|..+.+.
T Consensus 318 -----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 318 -----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred -----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 1245788999999 677776 489999998755443
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=2e-10 Score=100.07 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=169.0
Q ss_pred EeCCCCCCeEEEeeC-----CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCc
Q psy6984 23 ATNPKFPDTILSCSR-----DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKT 87 (380)
Q Consensus 23 ~~~~~~~~~l~t~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~ 87 (380)
...|+ +..++.... ++.|.+.|.........++ .+.. + . +.++|||++++++. .++.
T Consensus 39 ~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~----vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 39 APAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----GGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----ECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred ccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE----CCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence 34455 555555543 6789998875433221111 1222 2 3 99999999888775 3578
Q ss_pred EEEEECCCCceeeeecccC-------CCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984 88 LRLWDLAAGKTTRRFEDHT-------KDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS 158 (380)
Q Consensus 88 i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 158 (380)
|.+||..+.+.+..+..-. .....++|+|||++++.+.. ++.|.++|+.+......+.... |....
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~~~~~ 185 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIF 185 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEE
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----cceee
Confidence 9999999998888764211 23556899999999988764 6899999988876655553221 22233
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCC----ccceE-EEEEc-CCCCEEEEEcCCCcEEEEECCCCc--EEE
Q psy6984 159 PNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGH----TGYLN-TVTVS-PDGSLCASGGKDMNAMLWDLNDGK--HLH 229 (380)
Q Consensus 159 ~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~ 229 (380)
|.+.. .+++.+.||.+.+.++.. ++.......+ ...+. ...|. ++|++++ .+.++.+++.|...+. .+.
T Consensus 186 P~g~~-~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 186 PTAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEETT-EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred cCCCc-eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 44332 466777899999999876 4442211111 11221 23453 6776555 5558999999997654 222
Q ss_pred EEE-----------ecCceEEEEeecCcccceeeeeee-ee---ccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984 230 TLV-----------HNDIITALCFSPNRSFQKIKLDIS-RT---LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294 (380)
Q Consensus 230 ~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 294 (380)
.+. .......+++++++....+..... .. .....+.+++..+.+....+.- ...+++++++||+
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~ 342 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDE 342 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSS
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCC
Confidence 221 122233455566554332221100 00 1124678889888887654432 2467899999999
Q ss_pred C-EEEEe-eCCCcEEEEeccccee
Q psy6984 295 R-QIVSS-SRDKTIKLWNTLAHCK 316 (380)
Q Consensus 295 ~-~l~s~-~~dg~v~iw~~~~~~~ 316 (380)
+ +|+++ ..++.|.++|..+++.
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCE
T ss_pred CeEEEEEcCCCCeEEEEECCCCcE
Confidence 7 66664 4589999998755443
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=3.9e-10 Score=100.63 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=163.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEE
Q psy6984 65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFT 142 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~ 142 (380)
.....++++++++++++...++.|++||..+++........ .... ++|+|+++.++++..++ .|.+++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 35778999999997777777899999999887766554432 2233 89999999998888766 78888865443322
Q ss_pred Ee---eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe----eeCCccce-E-EEEEcCC-CCEEEEEc
Q psy6984 143 IV---EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN----HSGHTGYL-N-TVTVSPD-GSLCASGG 212 (380)
Q Consensus 143 ~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l~~~~ 212 (380)
.. .......+.+++++|... .|+.+..++.|+.||..+...... ..++...- . .++++|+ +.++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 22 111345567899998433 355566788999999987654332 22222222 3 8999994 66777777
Q ss_pred CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
.++.|+.|+.... +..+..... ..+ + ..+. ...........++++|
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~-------~~g-~---------------------~dg~---~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSAT-------QKT-V---------------------QDGL---REEALFAQPNGMTVDE 332 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTT-------CCS-C---------------------BCEE---GGGCBCSSEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCC-------CCC-c---------------------CCCc---ccccEeCCCeEEEEeC
Confidence 7889999987533 111111000 000 0 0000 0000112356899999
Q ss_pred cCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEE
Q psy6984 293 DNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW 371 (380)
Q Consensus 293 ~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw 371 (380)
+|+++++-. .++.|+.|+...+....+....... ... +- ......-.....++++++|.++++-..++.|+.+
T Consensus 333 dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~---g~~-~g--~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 333 DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA---SQI-DG--TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB---SCC-CB--STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC---CcC-CC--ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 999888777 7899999986555433332211100 000 00 0001111235689999999888888888889887
Q ss_pred Eee
Q psy6984 372 QVS 374 (380)
Q Consensus 372 ~~~ 374 (380)
.++
T Consensus 407 ~~e 409 (409)
T 3hrp_A 407 AVE 409 (409)
T ss_dssp EEC
T ss_pred EeC
Confidence 763
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.43 E-value=8.9e-11 Score=102.28 Aligned_cols=279 Identities=12% Similarity=0.041 Sum_probs=166.5
Q ss_pred EEEccCCCEEEEEeC-----CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEe
Q psy6984 70 IVLSSDGNYALSGSW-----DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWN 134 (380)
Q Consensus 70 ~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd 134 (380)
....|+++.+++... ++.|.++|..+++.+..+..-..+ . ++++|||++++.+. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789999888876 679999999999999888654444 4 99999999887765 367899999
Q ss_pred CCCcceEEEeeCCC------cCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC
Q psy6984 135 TLAHCKFTIVEDGH------SDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS 206 (380)
Q Consensus 135 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 206 (380)
..+......+.-+. ......++++|+++. ++.+. .++.|.++|+.+.+......-.. . ...+....+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~ 190 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPD 190 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETT
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCc
Confidence 87765544433211 112346899998763 44443 36899999999988776654211 1 222333456
Q ss_pred EEEEEcCCCcEEEEECCC-CcEEEEEE-ec----CceE-EEEee-cCcccceeeeeeeeeccccceEEEEcCCcee--ee
Q psy6984 207 LCASGGKDMNAMLWDLND-GKHLHTLV-HN----DIIT-ALCFS-PNRSFQKIKLDISRTLQKSNLILYPINHGKM--ET 276 (380)
Q Consensus 207 ~l~~~~~d~~i~i~d~~~-~~~~~~~~-~~----~~i~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 276 (380)
.+++.+.||.+.+.++.+ ++...... .- .++. ...|. +++.+.. ....+.+++++...+.. ..
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-------vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-------PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-------EBTTSEEEEEECTTSSCEECC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-------EeCCCEEEEEECCCCcceeec
Confidence 777888899999999876 55422110 00 0000 01221 2221111 11235566777654432 11
Q ss_pred eee--c--------cccceeEEEEeecCCEEEEeeCCCcEEEEecc-cceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984 277 PFF--S--------LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVDLETKKMVEELRPDVVSQSTKADPP 345 (380)
Q Consensus 277 ~~~--~--------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
+.. . .......++++|+++.++....++. -|... ....+.++|..+.+.+..+....
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~i~vg~---------- 331 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAKFEMGH---------- 331 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEEEEEEE----------
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEEEECCC----------
Confidence 111 0 0122334677888877766543110 01111 12334455667776666553321
Q ss_pred ceEEEEEecCCC-EEEEEe-eCCeEEEEEee
Q psy6984 346 MCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVS 374 (380)
Q Consensus 346 ~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~ 374 (380)
....+++++|++ .|++.. .++.|.++|..
T Consensus 332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 345799999997 677654 58999999975
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=1.3e-09 Score=92.93 Aligned_cols=231 Identities=10% Similarity=0.070 Sum_probs=139.0
Q ss_pred cceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984 65 HFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 65 ~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~ 143 (380)
..-.+..|+++++ ++++...++.|+.||..+++.. .+ .....+.+++++++|+++++ . ++.|.+||..++.....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 3456888998654 5566667889999999877653 22 24567899999999995554 3 56788999765543333
Q ss_pred eeCC---CcCcEEEEEEccCCCCCEEEEEeCC---------CeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEE-E
Q psy6984 144 VEDG---HSDWVSCVRFSPNHQNPIIVSAGWD---------RMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLC-A 209 (380)
Q Consensus 144 ~~~~---~~~~v~~~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 209 (380)
.... ....++.+++.|++. ++++...+ ..-.+|.+.. .+... ...+....+.++|+|+++.+ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence 2211 223478899998764 45543221 2234444432 22222 22334457889999999865 5
Q ss_pred EEcCCCcEEEEEC--CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeE
Q psy6984 210 SGGKDMNAMLWDL--NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLS 287 (380)
Q Consensus 210 ~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 287 (380)
+.+.++.|.+||+ .++...... . +..+. ........
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~-------~--------------------------~~~~~---------~~~~~p~g 203 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRR-------S--------------------------VYKLE---------KEEQIPDG 203 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEE-------E--------------------------EEECC---------GGGCEEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcE-------E--------------------------EEECC---------CCCCCCCe
Confidence 5666789999986 344321000 0 00000 00112346
Q ss_pred EEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEe-cCCCEEEEEee
Q psy6984 288 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDGQTLFAGYS 364 (380)
Q Consensus 288 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~g~~ 364 (380)
++++++|++.++...++.|..|+..++..+. .+.. ....+.+++|+ ||++.|+.++.
T Consensus 204 ~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~-----------~i~~---------p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 204 MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ-----------TVKL---------PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEBTTSCEEEEEETTTEEEEECTTTCCEEE-----------EEEC---------SSSBEEEEEEESGGGCEEEEEEB
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCceEEE-----------EEEC---------CCCCceEEEEeCCCCCEEEEEcC
Confidence 7888999888887778889999754333222 1111 11246789998 89888765543
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=4.8e-10 Score=100.07 Aligned_cols=250 Identities=15% Similarity=0.115 Sum_probs=158.0
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--cEEEEECC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--TLRLWDLA 94 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~ 94 (380)
.....|+++++ ++++++...++.|++|+........ + ... ..... ++++++++.|+++..++ .|.+++..
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~-~----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTT-V----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEE-E----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEE-e----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 46788999987 5677776777899999876432110 1 111 22233 89999999999998876 79999987
Q ss_pred CCceeeee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe---eCCCcCcE--EEEEEccCCCCCE
Q psy6984 95 AGKTTRRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV---EDGHSDWV--SCVRFSPNHQNPI 165 (380)
Q Consensus 95 ~~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v--~~~~~~~~~~~~~ 165 (380)
.+.....+ ......+.+++++|++..|+.+..++.|..||.......... ..+....- ..++|+|++. .+
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g-~l 281 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS-NF 281 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT-EE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC-EE
Confidence 66544333 224456788999995555666777889999997655432221 11222222 2899999543 35
Q ss_pred EEEEeCCCeEEEEeCCCceeeEeeeCC---------------ccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEE
Q psy6984 166 IVSAGWDRMVKVWNLTNCKLKINHSGH---------------TGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLH 229 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~ 229 (380)
+++-..++.|+.|+...... ...++ -.....++++|+|+++++-. .+++|+.|++.++....
T Consensus 282 yv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 66667788999999765321 12222 23478999999999888888 89999999987765322
Q ss_pred EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984 230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309 (380)
Q Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 309 (380)
....... ..+ ..+. ...........++++|++.++++-..++.|+.+
T Consensus 360 ~~g~~~~---------~g~---------------------~~g~---~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 360 VAGQVDV---------ASQ---------------------IDGT---PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EEECTTC---------BSC---------------------CCBS---TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred EeCCCCC---------CCc---------------------CCCC---hhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 2111100 000 0000 000111345689999998888887777888766
Q ss_pred e
Q psy6984 310 N 310 (380)
Q Consensus 310 ~ 310 (380)
.
T Consensus 407 ~ 407 (409)
T 3hrp_A 407 A 407 (409)
T ss_dssp E
T ss_pred E
Confidence 4
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.3e-11 Score=108.04 Aligned_cols=169 Identities=13% Similarity=0.071 Sum_probs=126.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------eee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---------TTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT 135 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~ 135 (380)
.++.+++++...++++|+.+ .+.+|++.+.+ ... ....+.. |+.++| |+..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 57889999999999999998 56679865332 111 2224556 999999 89999998 8899999997
Q ss_pred CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC
Q psy6984 136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215 (380)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 215 (380)
..-...... ..+...+.++.+.+. -++++..||.|.+||+++..... +...|.+++|+|+| ++.|..||
T Consensus 114 ~sl~~~~~~-~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 114 EELSEFRTV-TSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp SSTTCEEEE-EECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred hhhhccCcc-ceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 654332222 234556777776653 27888999999999999766542 34579999999999 67899999
Q ss_pred cEEEEECCCCcE--EEEE------E----ecCceEEEEeecCcccce
Q psy6984 216 NAMLWDLNDGKH--LHTL------V----HNDIITALCFSPNRSFQK 250 (380)
Q Consensus 216 ~i~i~d~~~~~~--~~~~------~----~~~~i~~~~~~~~~~~~~ 250 (380)
.+++|+...++. ...+ . ++..+.+++|.++..+..
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 999998877764 4444 1 456799999999877654
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=1.6e-10 Score=100.86 Aligned_cols=263 Identities=12% Similarity=0.086 Sum_probs=150.4
Q ss_pred cceEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeeee-------cccCCCeEEEEEeCCCCEEEEEeC-----CCcE
Q psy6984 65 HFISDIVLSSDGNYALSGS--WDKTLRLWDLAAGKTTRRF-------EDHTKDVLSVAFSVDNRQIVSSSR-----DKTI 130 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~s~~~-----d~~v 130 (380)
..+..++++++|+.+++.. .++.++||.+.+++. ..+ ..+...+..++++++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5678999999999888864 234245555444543 222 124467899999999886665543 5789
Q ss_pred EEEeCCCcceEEEeeC-----CCcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCceeeEeeeCCccce-EEEEE
Q psy6984 131 KLWNTLAHCKFTIVED-----GHSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCKLKINHSGHTGYL-NTVTV 201 (380)
Q Consensus 131 ~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~i-~~~~~ 201 (380)
.+||+.++.....+.. .+......+++.+.+. .++++.. .++.|.+||+.+++......+|.... ....+
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999876653333321 1223467889987543 2445554 67899999998776655443332110 01233
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC---Cce-----
Q psy6984 202 SPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN---HGK----- 273 (380)
Q Consensus 202 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----- 273 (380)
.++|..+.+.+.++.+..|. ..+..++++|++....... .....++.++.. .+.
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~-----~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSP-----MHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp EETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEE-----SSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEe-----CCCCeEEEEEHHHhcCCCCChhh
Confidence 44566666666676665553 1245677777764321111 011122222211 000
Q ss_pred eee--eeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984 274 MET--PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351 (380)
Q Consensus 274 ~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (380)
... ...+.......++++++|.++++...++.|.+|+...+....+... + .......++
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~----------~---------~~~~p~~va 297 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD----------E---------KLSWTDSFN 297 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC----------G---------GGSCEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC----------C---------ceecCCeeE
Confidence 000 0111222345789999999999988899999998622221111100 0 112356889
Q ss_pred EecCCCEEEEEeeCC
Q psy6984 352 WSTDGQTLFAGYSDN 366 (380)
Q Consensus 352 ~s~dg~~l~~g~~dg 366 (380)
+.++|+++++.+..+
T Consensus 298 ~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLH 312 (343)
T ss_dssp ECTTSCEEEEECCGG
T ss_pred ECCCCcEEEEeCccc
Confidence 999999888766443
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=7.6e-10 Score=98.16 Aligned_cols=274 Identities=9% Similarity=0.044 Sum_probs=171.3
Q ss_pred CCeEEEeeC-C----CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEEC
Q psy6984 29 PDTILSCSR-D----NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDL 93 (380)
Q Consensus 29 ~~~l~t~~~-d----g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~ 93 (380)
+..++.+.. + +.|.+.|.........++ .+. .+ .+.++|||++|+++. .++.|.++|.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~----vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD----GGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE----ECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE----CCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 455554443 3 699999976543222221 122 23 799999999888776 3678999999
Q ss_pred CCCceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 94 AAGKTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 94 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
.+++.+..+.-- ......++|+|||++++.+.. ++.|.+.|+.+......+.-+. +....|.+. .
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~-~ 230 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASP-T 230 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEET-T
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCC-c
Confidence 999888776421 123456899999999998874 5789999988766554444322 133445443 3
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEee----eCCccc-eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE--EEE-----
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINH----SGHTGY-LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH--TLV----- 232 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~----~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~----- 232 (380)
.+++.+.||.+.+.++.+.+..... .....+ ...+.+.+++..++..+..+.+.+.|........ .+.
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 5667777888888888555443211 101111 1234678888887777788999999986554221 111
Q ss_pred ------ecCceEEEEeecCcccceeeeeeee-e---ccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEee
Q psy6984 233 ------HNDIITALCFSPNRSFQKIKLDISR-T---LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSS 301 (380)
Q Consensus 233 ------~~~~i~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~ 301 (380)
.......++++|++........... . ...+.+.+++..+.+....+. .....+.++|+||++ .+++..
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEE
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEc
Confidence 0111123577777654332221100 0 013468889988887765543 223577899999999 888777
Q ss_pred -CCCcEEEEeccccee
Q psy6984 302 -RDKTIKLWNTLAHCK 316 (380)
Q Consensus 302 -~dg~v~iw~~~~~~~ 316 (380)
.++.|.++|+.+...
T Consensus 390 ~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 390 AGTQTLHIYDAATGEE 405 (426)
T ss_dssp TTTTEEEEEETTTCCE
T ss_pred CCCCeEEEEECCCCCE
Confidence 589999998755443
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=5.5e-10 Score=106.87 Aligned_cols=245 Identities=10% Similarity=0.051 Sum_probs=146.9
Q ss_pred cCCCcceEEEEEccCCCEEEEE-----eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc------
Q psy6984 61 KGHSHFISDIVLSSDGNYALSG-----SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT------ 129 (380)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~l~s~-----~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~------ 129 (380)
.+|...+..+.|||||++||-+ +....|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3455678889999999998843 333579999999998654311 11112467899 9999998887743
Q ss_pred -------EEEEeCCCcce--EEEee-CC-CcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCce-eeEeeeCCcc
Q psy6984 130 -------IKLWNTLAHCK--FTIVE-DG-HSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCK-LKINHSGHTG 194 (380)
Q Consensus 130 -------v~iwd~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~-~~~~~~~~~~ 194 (380)
|.+|++.+... ..... .. +...+..+.++|+++. ++++.+ .+..|.++|+.+.. ....+..+..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 88898765432 22222 22 3455778999998764 334433 23589999997653 2223334444
Q ss_pred ceEEEEEcCCCCEE-EEEcCC---CcEEEEECCCCcE---EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984 195 YLNTVTVSPDGSLC-ASGGKD---MNAMLWDLNDGKH---LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267 (380)
Q Consensus 195 ~i~~~~~~~~~~~l-~~~~~d---~~i~i~d~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (380)
..... ++++|..| +....+ +.|..+|+.++.. .....+...+. .|++++........ ......+.++
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~---~~g~~~l~~~ 355 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM---VDATARVEQF 355 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE---ETTEEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE---ECCeeEEEEE
Confidence 44444 55666554 444443 6899999987653 22223333333 77777654332211 1122356777
Q ss_pred EcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC----CcEEEEecccc
Q psy6984 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAH 314 (380)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~ 314 (380)
+...+............+..+.++|+++.|+....+ ++|+.||+.++
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 776544332222333456677778888876655444 78888887554
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=1.1e-08 Score=88.48 Aligned_cols=216 Identities=15% Similarity=0.056 Sum_probs=139.5
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 96 (380)
.......|+|+.+.++++...++.|..|+...... ..+ .....+.++.++++|+++++. .+ .|.+||..++
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g 119 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRK------TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATG 119 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC
Confidence 34567788887555677777788999998754211 111 123468899999999877754 44 5999999887
Q ss_pred ceeeeecc---c-CCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984 97 KTTRRFED---H-TKDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 97 ~~~~~~~~---h-~~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 166 (380)
+....... . ...+.+++++|+|+++++... .+.|..++ .+ ...... ........++|+|+++. ++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~-~~~~~~~~i~~s~dg~~-ly 194 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLF-ADISIPNSICFSPDGTT-GY 194 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEE-EEESSEEEEEECTTSCE-EE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEee-CCCcccCCeEEcCCCCE-EE
Confidence 75433221 1 235789999999997766542 23455555 22 222221 12234678999998643 34
Q ss_pred EEEeCCCeEEEEeCC--Cc-ee-----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-Cce
Q psy6984 167 VSAGWDRMVKVWNLT--NC-KL-----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-DII 237 (380)
Q Consensus 167 ~s~~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i 237 (380)
++...++.|.+||+. ++ .+ ..........+..+.++++|++.++...++.|.+||. +++.+..+... ..+
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~ 273 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT 273 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence 555667899999985 44 21 1122223456788999999998877767789999998 56666666543 357
Q ss_pred EEEEee-cCcc
Q psy6984 238 TALCFS-PNRS 247 (380)
Q Consensus 238 ~~~~~~-~~~~ 247 (380)
.+++|+ ++..
T Consensus 274 ~~~af~g~d~~ 284 (326)
T 2ghs_A 274 TCPAFIGPDAS 284 (326)
T ss_dssp EEEEEESTTSC
T ss_pred EEEEEecCCCC
Confidence 888887 6543
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.30 E-value=2.3e-09 Score=91.91 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=143.1
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984 60 LKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138 (380)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~ 138 (380)
+...........|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+.. +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 344445677899999998 5667777889999998 444 34455556678999999999977766667889999865 3
Q ss_pred ceEEEee--CC-CcCcEEEEEEccCCCCCEEEE----EeC-------------CCeEEEEeCCCceeeEeeeCCccceEE
Q psy6984 139 CKFTIVE--DG-HSDWVSCVRFSPNHQNPIIVS----AGW-------------DRMVKVWNLTNCKLKINHSGHTGYLNT 198 (380)
Q Consensus 139 ~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~i~~ 198 (380)
....... .+ ....++.+++.+++. ++++ |.. .+.|..+|..+++..... .....+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g 192 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG 192 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence 2222211 11 112356788988764 5665 321 256778887665544332 3446788
Q ss_pred EEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEE---EE--ecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984 199 VTVSPDGSLCASGGKD------MNAMLWDLNDGKHLHT---LV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267 (380)
Q Consensus 199 ~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (380)
++|+|+++.|+.+... +.|++|++..+. +.. +. ....+..+++.+++.... .. ...+.+|
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-------~~-~~gv~~~ 263 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-------SS-GTGVCVF 263 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-------CC-SSEEEEE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-------ec-CCcEEEE
Confidence 9999999977766554 789999987654 211 11 122234455666554211 11 2346677
Q ss_pred EcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI 306 (380)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 306 (380)
+.. ++....+.. ...+.+++|+|+++.|..++.++..
T Consensus 264 ~~~-g~~~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 264 DSD-GQLLGHIPT-PGTASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CTT-SCEEEEEEC-SSCCCEEEECTTSCEEEEEETTEEE
T ss_pred CCC-CCEEEEEEC-CCceeEEEEeCCCCEEEEEcCCeEE
Confidence 663 433333322 2357889999999888877766433
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=1.2e-09 Score=96.80 Aligned_cols=267 Identities=12% Similarity=0.090 Sum_probs=155.7
Q ss_pred ccCCCEEEEEeCC-----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCC
Q psy6984 73 SSDGNYALSGSWD-----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWNTLA 137 (380)
Q Consensus 73 ~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd~~~ 137 (380)
.++++++++.... +.|.++|..+++.+..+..-..+ .++++||+++++.+. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3577777766553 69999999999999888654445 899999999888775 467899999877
Q ss_pred cceEEEeeCC---C---cCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEE
Q psy6984 138 HCKFTIVEDG---H---SDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLC 208 (380)
Q Consensus 138 ~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 208 (380)
......+.-+ . ......++++|+++ .++.+. .++.|.+.|+.+.+....+.-.. . ....|++ +.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEE
Confidence 6554443221 0 11234578999876 455444 26789999999988766554211 1 2334433 556
Q ss_pred EEEcCCCcEEEEECCCCcEEEEE----EecC-c-eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceee--eeee-
Q psy6984 209 ASGGKDMNAMLWDLNDGKHLHTL----VHND-I-ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME--TPFF- 279 (380)
Q Consensus 209 ~~~~~d~~i~i~d~~~~~~~~~~----~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 279 (380)
++.+.||.+.+.+..+++..... .... + ...+.+++++..... ....+.+.+.+....... ..+.
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~------~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW------PTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE------EBTTSEEEEEEECSSCEEECCCEES
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE------EeCCCcEEEEeccCCceEEeeeeee
Confidence 66777888888887555443211 0000 0 001222333221110 011234555555333211 0000
Q ss_pred ------c---cccceeEEEEeecCCEEEEeeC----------CCcEEEEecccceeeeEeecccceEEEeeCcccccccC
Q psy6984 280 ------S---LFRDVLSVAFSVDNRQIVSSSR----------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST 340 (380)
Q Consensus 280 ------~---~~~~v~~~~~s~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (380)
. .......++++|+++.++.... ++.|.+.| ..+.+.+..+....
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID-----------~~T~kvv~~I~vg~----- 370 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN-----------AETGERINKIELGH----- 370 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE-----------TTTCCEEEEEEEEE-----
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE-----------CCCCeEEEEEECCC-----
Confidence 0 0011223688998877665432 23455554 45544444432211
Q ss_pred CCCCCceEEEEEecCCC-EEEEEe-eCCeEEEEEee
Q psy6984 341 KADPPMCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVS 374 (380)
Q Consensus 341 ~~~~~~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~ 374 (380)
....++|+|||+ ++++.. .++.|.++|+.
T Consensus 371 -----~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 371 -----EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp -----EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred -----CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 235789999999 888877 59999999974
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=7.3e-08 Score=85.05 Aligned_cols=305 Identities=11% Similarity=0.063 Sum_probs=168.9
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCccccccccc--CC--CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--GH--SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED 104 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~--~h--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 104 (380)
+..++.++.++.|..+|................ .+ ...+.. ....++..++.++.++.|..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 357888888899999987654332211110000 00 112222 2223466888899999999999999988776654
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc----EEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW----VSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180 (380)
Q Consensus 105 h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 180 (380)
........... +..++.++.++.+..+|..++............. ....... ...++.+..++.+..+|.
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEEECCTTTEEEEEET
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEEEEcCCCEEEEEEC
Confidence 32211111222 4578888899999999987665544433211100 0111121 125777888999999999
Q ss_pred CCceeeEeeeCCccc----eEE---EEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984 181 TNCKLKINHSGHTGY----LNT---VTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~----i~~---~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
.+++........... +.. +...| .+..+..++.++.+..+|..+++.+....... ...+....+.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~----- 279 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDGNR----- 279 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEETTE-----
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceEECCE-----
Confidence 888776554321100 000 00111 24577778889999999999998876654332 2222222111
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeecc-ccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSL-FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 330 (380)
+.....++.+..++..+++..-..... ......... .+..|+.++.+|.|.++|..++..+........
T Consensus 280 ---l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~----- 349 (376)
T 3q7m_A 280 ---IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS----- 349 (376)
T ss_dssp ---EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-----
T ss_pred ---EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----
Confidence 111223456777887777654322211 111222222 356788888899999998766544332221100
Q ss_pred eCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
. ....... .+..|+.++.+|.|..|+
T Consensus 350 ----------~----~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 350 ----------G----FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ----------C----BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ----------c----ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 0 0001111 245677788999998886
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=3.4e-08 Score=85.37 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=134.3
Q ss_pred eEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 67 ISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 67 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
.....|+|+++ ++++...++.|..||..+++... +. ....+.+++++++|+++++. .+ .|.+||..++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 45788999754 55566678899999998775432 22 34678999999999877654 44 48899976554333322
Q ss_pred CC---CcCcEEEEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCC
Q psy6984 146 DG---HSDWVSCVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDM 215 (380)
Q Consensus 146 ~~---~~~~v~~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~ 215 (380)
.. ....+.+++++|++. ++++... .+.|..++ +++... ...+....+.++|+|+++.++ +.+.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred CCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 11 123578899999764 4544332 24566666 344332 222334577899999998664 455678
Q ss_pred cEEEEECC--CC-cE--EEEEE----ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccccee
Q psy6984 216 NAMLWDLN--DG-KH--LHTLV----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL 286 (380)
Q Consensus 216 ~i~i~d~~--~~-~~--~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (380)
.|.+||+. ++ +. ...+. ....+..+++.+++.+... ....+.+..|+. .++....+......+.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva------~~~~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA------RWGEGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE------EETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE------EeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence 99999986 55 21 01111 1234566777776643211 112345777776 3444333333345688
Q ss_pred EEEEe-ecCCEEEEeeC
Q psy6984 287 SVAFS-VDNRQIVSSSR 302 (380)
Q Consensus 287 ~~~~s-~~~~~l~s~~~ 302 (380)
+++|+ |+++.|+.++.
T Consensus 275 ~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEESTTSCEEEEEEB
T ss_pred EEEEecCCCCEEEEEec
Confidence 99998 88877655443
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=6.9e-09 Score=88.86 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=140.6
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 91 (380)
+..+........|.|+...++++...++.|..|+.... ...+..+...+..++++++|+++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34455677788899873336777778899999976321 11233345568899999999977766666889999
Q ss_pred ECCCCceeeeeccc----CCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEeCCCcceEEEeeCCCcC
Q psy6984 92 DLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVS----SSR-------------DKTIKLWNTLAHCKFTIVEDGHSD 150 (380)
Q Consensus 92 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~ 150 (380)
+.. ++........ ...+.+++++|+|+..++ |.. .+.|..+|..++...... ...
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~ 188 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD 188 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC
Confidence 986 5433222111 124667999999998886 332 245677775443322222 233
Q ss_pred cEEEEEEccCCCCCEEEEEeCC------CeEEEEeCCCceee---EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984 151 WVSCVRFSPNHQNPIIVSAGWD------RMVKVWNLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221 (380)
Q Consensus 151 ~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 221 (380)
....++|+|+++ .|+.+... +.|..|++....+. .........+..+.++++|++.++ ..+ .|.+|+
T Consensus 189 ~p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~ 264 (305)
T 3dr2_A 189 HPNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD 264 (305)
T ss_dssp SEEEEEECTTSS--EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred CCcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence 467899999865 34444433 78999998654311 111112334567889999995544 444 599999
Q ss_pred CCCCcEEEEEEecCceEEEEeecCcc
Q psy6984 222 LNDGKHLHTLVHNDIITALCFSPNRS 247 (380)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~~~~~~~~~ 247 (380)
. .++.+..+..+..+..++|++++.
T Consensus 265 ~-~g~~~~~~~~~~~~~~~~f~~d~~ 289 (305)
T 3dr2_A 265 S-DGQLLGHIPTPGTASNCTFDQAQQ 289 (305)
T ss_dssp T-TSCEEEEEECSSCCCEEEECTTSC
T ss_pred C-CCCEEEEEECCCceeEEEEeCCCC
Confidence 8 577777776666678888886653
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.21 E-value=1.3e-08 Score=88.71 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=144.2
Q ss_pred eEEeEEecCcccceEEEEeCCCCCCeEEEee--CCCeEEEeecCCCCCCccccc--ccccCCCcceEEEEEccCCCEEEE
Q psy6984 6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCS--RDNTLIIWKLTRDDTNYGVPQ--KRLKGHSHFISDIVLSSDGNYALS 81 (380)
Q Consensus 6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~--~dg~v~vw~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s 81 (380)
+++++.+. ..+..|+++|+ ++++++.. .++.++||.+. .......+. ....+|...+..++++++++++++
T Consensus 9 ~~~v~~~~---~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp CEEEEEES---SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred eEEEEEcC---CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 45555554 68899999987 67777754 23446777765 211111111 112345567899999999876665
Q ss_pred EeC-----CCcEEEEECCCCceeeeeccc------CCCeEEEEEeCCCCEE-EEEe---CCCcEEEEeCCCcceEEEeeC
Q psy6984 82 GSW-----DKTLRLWDLAAGKTTRRFEDH------TKDVLSVAFSVDNRQI-VSSS---RDKTIKLWNTLAHCKFTIVED 146 (380)
Q Consensus 82 ~~~-----d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~-~s~~---~d~~v~iwd~~~~~~~~~~~~ 146 (380)
-.. +..|.+||+.+++.+..+... ...+..+++++++..+ ++.. .++.|.+||..++...... .
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~ 162 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL-Q 162 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-T
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-c
Confidence 433 578999999998876665421 2346789999865554 5555 5789999997655433322 1
Q ss_pred CC-----------------------------cCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeCC---Cce-----e--e
Q psy6984 147 GH-----------------------------SDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNLT---NCK-----L--K 186 (380)
Q Consensus 147 ~~-----------------------------~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~---~~~-----~--~ 186 (380)
+| ...+..++++|+++ .|+.+...+ .+..++.. ... . .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~--~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE--WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC--EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC--EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 11 02357899999764 455554444 55444431 100 0 0
Q ss_pred EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe--cCceEEEEeecCcc
Q psy6984 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH--NDIITALCFSPNRS 247 (380)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~ 247 (380)
....++......++++++|+++++...++.|.+||..+++....... -..+..+++.+++.
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 01123344567799999999999999999999999856653322222 23467777776543
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=8.2e-09 Score=98.76 Aligned_cols=242 Identities=10% Similarity=0.043 Sum_probs=143.0
Q ss_pred CcccceEEEEeCCCCCCeEE-E----eeCCCeEEEeecCCCCCCcccccccccCCCcc--eEEEEEccCCCEEEEEeCCC
Q psy6984 14 GHNGWVTQIATNPKFPDTIL-S----CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF--ISDIVLSSDGNYALSGSWDK 86 (380)
Q Consensus 14 ~h~~~v~~i~~~~~~~~~l~-t----~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~ 86 (380)
+|...+..+.|+|+ +++|| + |+.+.+|++||+...... ..+... ...++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPL--------ETPLKDVKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEE--------EEEEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCC--------ccccCCceeccEEEe-CCCEEEEEEecC
Confidence 45567888999998 56666 2 334468999998754311 111112 2567899 999999888774
Q ss_pred -------------cEEEEECCCCce--eeee--cc-cCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCcc-eEEE
Q psy6984 87 -------------TLRLWDLAAGKT--TRRF--ED-HTKDVLSVAFSVDNRQIVSSSR----DKTIKLWNTLAHC-KFTI 143 (380)
Q Consensus 87 -------------~i~vwd~~~~~~--~~~~--~~-h~~~v~~~~~~~~~~~~~s~~~----d~~v~iwd~~~~~-~~~~ 143 (380)
.|++|++.++.. ...+ .. |...+..+.|+|||++++.... .+.+.++|+.... ....
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 399999987653 2222 23 4445788999999998764432 2478899875542 2222
Q ss_pred eeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEEEEcCCC---
Q psy6984 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDM--- 215 (380)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--- 215 (380)
+. .+.+..... +.+++.. +++.... .+.|..+|+.+... ...+..|...+. .++++++.|+....++
T Consensus 276 l~-~~~~~~~~~-~~~~g~~-l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 276 VQ-GDLDADVSL-VDNKGST-LYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp EE-CSSSSCEEE-EEEETTE-EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred Ee-CCCCceEEE-EeccCCE-EEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 22 233333333 4454443 3444433 36799999987543 123334444444 8899998877665543
Q ss_pred cEEEEECCCCcEEEEEEe--cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 216 NAMLWDLNDGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 216 ~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
.|++||+..+ ....+.. ...+..+.+++++....+.. .....-..++.+++.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~--ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGF--ENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEE--ECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEe--cCCCCCCEEEEEECCCCe
Confidence 6889998744 4444433 23455666666654433221 111223456666665554
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=2.6e-07 Score=81.33 Aligned_cols=236 Identities=16% Similarity=0.147 Sum_probs=136.2
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCc---ceE-EEee------CCCcCcEEEEEEccCCCCCEEEEEeCC------CeEEEE
Q psy6984 116 VDNRQIV-SSSRDKTIKLWNTLAH---CKF-TIVE------DGHSDWVSCVRFSPNHQNPIIVSAGWD------RMVKVW 178 (380)
Q Consensus 116 ~~~~~~~-s~~~d~~v~iwd~~~~---~~~-~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iw 178 (380)
++.++++ ++..++.|.++|+.+. .++ ..++ ..-...-..+.+.|++ +++++..+ +.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence 7777765 5667889999997533 122 2221 0001123456677765 55555444 789999
Q ss_pred eCCCceeeEeeeCC--c-cceEEEEEcCCCCEEEEEc-------------------CCCcEEEEECCCCcEEEEEEec--
Q psy6984 179 NLTNCKLKINHSGH--T-GYLNTVTVSPDGSLCASGG-------------------KDMNAMLWDLNDGKHLHTLVHN-- 234 (380)
Q Consensus 179 d~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~-- 234 (380)
|.++.+.+...... . .....+.|+|+++.+++.. .+.+|.+||+.+++.+..+...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 99988776655421 1 2234577899999888874 4789999999998877777654
Q ss_pred -CceEEEEe--ecCcccceeeeeeeeeccccceEEEEcCCcee-------------eeeee-------ccccceeEEEEe
Q psy6984 235 -DIITALCF--SPNRSFQKIKLDISRTLQKSNLILYPINHGKM-------------ETPFF-------SLFRDVLSVAFS 291 (380)
Q Consensus 235 -~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~~~~~v~~~~~s 291 (380)
.....+.| +|++.+..+..++...-..+.+.+|..+.+.. ...+. ........+.+|
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23444544 88887765554422111233444433322221 11000 002346789999
Q ss_pred ecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCccccc------ccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984 292 VDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVS------QSTKADPPMCLSLAWSTDGQTLFAGY 363 (380)
Q Consensus 292 ~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~g~ 363 (380)
|||++|+.+.. .+.|.++++...... +.+......-.. ...+ -.+.-..+++||||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~--------~lv~~I~tGG~~~~~~~~~G~~-~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKP--------VLTGKVKLGGIFHRADHPAGHK-LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSC--------EEEEEEECBTTTTCBCCTTSCC-CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCc--------EEEEEEEeCCeecccccccccc-CCCCCCEEEEcCCCCEEEEEc
Confidence 99999887665 689999987533211 112211111000 0000 001123578999999999887
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=1.2e-07 Score=90.23 Aligned_cols=283 Identities=9% Similarity=0.040 Sum_probs=163.7
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCccccccccc-------CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-------GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR 101 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 101 (380)
+..++.++.++.|..+|....+........... .+. ....+.+ ++..++.++.|+.|..+|..+|+.+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccC-CCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 346777777788888876543322211110000 000 0012222 467899999999999999999999887
Q ss_pred eccc-C----CCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcC--------------------
Q psy6984 102 FEDH-T----KDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSD-------------------- 150 (380)
Q Consensus 102 ~~~h-~----~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~-------------------- 150 (380)
+... . ..+..--.- .+..++.++. ++.|..+|..++............
T Consensus 154 ~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp EETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred ecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 7644 1 112111111 2344555443 689999998877665444321111
Q ss_pred -----------cEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-----
Q psy6984 151 -----------WVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT----- 193 (380)
Q Consensus 151 -----------~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~----- 193 (380)
....+++.|... .++.+..++ .|..+|.++++....+.. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~--~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELN--TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CceeEeCCCcccccceeEcCCCC--EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 002356666543 555555443 599999999887766542 21
Q ss_pred --cceEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEEEEecC------------ce-------------------
Q psy6984 194 --GYLNTVTVSPDG---SLCASGGKDMNAMLWDLNDGKHLHTLVHND------------II------------------- 237 (380)
Q Consensus 194 --~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~i------------------- 237 (380)
....-+....+| ..++.++.+|.++++|..+|+.+....... ++
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 122223334477 688999999999999999999887664221 00
Q ss_pred -----EEEEeecCcccceeeeee-----ee--------------------------------eccccceEEEEcCCceee
Q psy6984 238 -----TALCFSPNRSFQKIKLDI-----SR--------------------------------TLQKSNLILYPINHGKME 275 (380)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~-----~~--------------------------------~~~~~~~~~~~~~~~~~~ 275 (380)
..++++|+.....+.... .. ....+.+..++..+++..
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 023455543322111000 00 001255777888888764
Q ss_pred eeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984 276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 318 (380)
Q Consensus 276 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 318 (380)
-... +..+++...+..++..++.++.||.+++||..++..+.
T Consensus 471 W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 471 WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 3332 23344556677888899999999999999876655443
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.11 E-value=1e-07 Score=90.74 Aligned_cols=284 Identities=8% Similarity=0.027 Sum_probs=161.6
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCccccccc----ccCCC-cce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHS-HFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~----~~~h~-~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 102 (380)
+..++.++.++.|..+|....+......... ..... ..+ ..+.+ ++..++.++.|+.|..+|..+|+.+.++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 3567777778888888876543322211100 00000 001 11222 3568899999999999999999988776
Q ss_pred ccc--CCCeEEEEEeC---CCCEEEEEe------CCCcEEEEeCCCcceEEEeeCCC-c---------------------
Q psy6984 103 EDH--TKDVLSVAFSV---DNRQIVSSS------RDKTIKLWNTLAHCKFTIVEDGH-S--------------------- 149 (380)
Q Consensus 103 ~~h--~~~v~~~~~~~---~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~~~-~--------------------- 149 (380)
... ......+..+| ++. ++.++ .++.|..||..++.......... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 532 11101111112 444 44443 36899999988776654433110 0
Q ss_pred --------CcEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-------
Q psy6984 150 --------DWVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT------- 193 (380)
Q Consensus 150 --------~~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~------- 193 (380)
.....+++.|.. .+++.+..++ .|..+|.++++....+.. |.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPEL--NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeecCCCCccccceeEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 000145666653 3566666665 399999999988766543 21
Q ss_pred cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEecC--ce-------------------------------
Q psy6984 194 GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVHND--II------------------------------- 237 (380)
Q Consensus 194 ~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i------------------------------- 237 (380)
..+.-.....+|+ .++.++.+|.++++|..+|+.+....... ..
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 1122222233565 78899999999999999999875443211 00
Q ss_pred -------EEEEeecCcccceeeee-----e--eee------------c--------------------cccceEEEEcCC
Q psy6984 238 -------TALCFSPNRSFQKIKLD-----I--SRT------------L--------------------QKSNLILYPINH 271 (380)
Q Consensus 238 -------~~~~~~~~~~~~~~~~~-----~--~~~------------~--------------------~~~~~~~~~~~~ 271 (380)
..++++|+.....+... . ... . ..+.+..|+..+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01344444322111000 0 000 0 025577889888
Q ss_pred ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984 272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 318 (380)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 318 (380)
++..-.... ..+...-.+...+..++.|+.||.++.||..+++.+.
T Consensus 465 G~~~W~~~~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 465 QQAAWEVPY-VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCeEeEccC-CCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 876543322 2333444667788899999999999999876655543
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=105.71 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=83.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 154 (380)
++..+++++.|+.|+.||..+|+.+.++.. +.+.+..+..++..+++++.|+.+..||..++.............+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 578999999999999999999999888765 45555556677878888889999999997655443322211111010
Q ss_pred EEEccCC-CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 155 VRFSPNH-QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 155 ~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
..|-- ....+++++.++.|+.||..+++....+..+. ...++|++..+++++.|+.|+.||..+++.+..+.
T Consensus 85 --~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 85 --ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp --TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred --cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 01110 12256778889999999999888766554432 23456788899999999999999999988665543
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=7.3e-09 Score=89.59 Aligned_cols=318 Identities=13% Similarity=0.039 Sum_probs=167.8
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
++.++...+.-+.....+.....+ ..+..++.++.|..|| ....... ........+.++...+++. |..++
T Consensus 7 ~~g~~~W~~~~~~~~~~~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~-----~~~~~~~~~~~~~~~~~g~-l~v~t 77 (330)
T 3hxj_A 7 NDCKIKWEFLIGNSIDSSPILAKN--GTIYLGSSNKNLYAIN-TDGSVKW-----FFKSGEIIECRPSIGKDGT-IYFGS 77 (330)
T ss_dssp -----CCTTTSCEEECCCCEECTT--SCEECSSTTTTTEEEC-TTSCEEE-----SSCGGGEEEECCEETTTTE-ECCSS
T ss_pred CCceEEEEEeCCCCcccCceEccC--CeEEEEcCCCEEEEEC-CCCcEEE-----EEecCCCcccceEEecCCc-EEEec
Confidence 344444444444333334444333 3577777788888888 4332211 1122233456677776665 55555
Q ss_pred CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (380)
.+ |..+|. +++....+...........+. +..+..++.++.+..+|.. +....... .....+.++...+++
T Consensus 78 ~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g-- 148 (330)
T 3hxj_A 78 DK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDG-- 148 (330)
T ss_dssp CE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTS--
T ss_pred Cc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCC--
Confidence 54 888886 555554443322222223333 5567788888999999876 43332222 223334455555443
Q ss_pred CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe-cCceEEEEe
Q psy6984 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH-NDIITALCF 242 (380)
Q Consensus 164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~~~~~ 242 (380)
.+..++.++.|..+|.. ++...........+.++..++++.+++.. +.+..+| .+++....... ...+.++..
T Consensus 149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~ 222 (330)
T 3hxj_A 149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAI 222 (330)
T ss_dssp -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEE
T ss_pred -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEE
Confidence 36667778999999998 66555554444556777777888765544 7899999 67776655432 233455555
Q ss_pred ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
.+++.... ....+.+..++. .++....+......+..+...+++ .|..++.+|.|..+|. ++........
T Consensus 223 ~~~g~l~v-------~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 223 SEDGTIYV-------TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET 292 (330)
T ss_dssp CTTSCEEE-------EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC
T ss_pred CCCCeEEE-------EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc
Confidence 55432211 112334444542 232222222111222334444445 4556677888888874 3322221111
Q ss_pred ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT 376 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~ 376 (380)
. ...+.++...++|+++ .|+.+|.+++......
T Consensus 293 ~--------------------~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 293 G--------------------SWIIATPVIDENGTIY-FGTRNGKFYALFNLEH 325 (330)
T ss_dssp S--------------------SCCCSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred C--------------------CccccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence 0 1123345556778754 5889999998876543
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.08 E-value=3.7e-11 Score=105.90 Aligned_cols=193 Identities=9% Similarity=0.042 Sum_probs=107.4
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD 108 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 108 (380)
+..+++++.||.|..||....+..... .. ..+.+..+..++..+++++.|+.|+.||..+++.+..+..+...
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~-----~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTL-----KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE-----EC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEe-----cC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 468999999999999997655433221 11 23334444567778888889999999999998877665443211
Q ss_pred -eEE-EEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee
Q psy6984 109 -VLS-VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186 (380)
Q Consensus 109 -v~~-~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 186 (380)
+.+ ..+ .++..+++++.|+.+..||..++........ +. ...++|. ...+++++.|+.|+.||.++++..
T Consensus 82 ~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~--~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 82 LVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPS--TSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----ccccccc--CCEEEEEecCCEEEEEECCCCCEE
Confidence 100 011 1345677888899999999876655433221 11 2344553 336778888999999999988765
Q ss_pred EeeeCCccceEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984 187 INHSGHTGYLNTVTVSPDG---SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238 (380)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~ 238 (380)
.....+. .....++++. ..+++++.|+.++.||..+++.+.......++.
T Consensus 154 W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~ 206 (369)
T 2hz6_A 154 WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV 206 (369)
T ss_dssp CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence 4433211 1222333432 456778899999999999999888776665554
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=1.3e-08 Score=88.80 Aligned_cols=264 Identities=8% Similarity=-0.059 Sum_probs=156.6
Q ss_pred eEEEeeCCC----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEECCCC
Q psy6984 31 TILSCSRDN----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDLAAG 96 (380)
Q Consensus 31 ~l~t~~~dg----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~ 96 (380)
.+++-..++ +|.+.|.........++ .+.. + .+.++||+++++++. .++.|.+||+.++
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~----vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSL----GAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEE----ECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEe----CCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 344444455 77888876543222111 2332 3 699999999998886 3678999999999
Q ss_pred ceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEE--EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 97 KTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKL--WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 97 ~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
+.+.++... ......++++|||++++.+.. +..+.+ +|..+ ...+..+. |..+.|++.. .
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-----~~~~~p~g~~-~ 177 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-----CFHIHPGAAA-T 177 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-----CCCCEEEETT-E
T ss_pred CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-----ceEEccCCCe-E
Confidence 998887533 123567899999999998864 467888 88755 22222111 1223454443 4
Q ss_pred EEEEeCCCeEEEEeCCC-----ceeeEe----eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEEe-
Q psy6984 166 IVSAGWDRMVKVWNLTN-----CKLKIN----HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK--HLHTLVH- 233 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~- 233 (380)
+++.+.|+.+.+.|+.+ ++.... ..-...+. . .+++..++..+. +.+.+.|..... .+..+..
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 55666788888888876 332210 11111222 3 566666555556 899999986532 2222211
Q ss_pred ----------cCceEEEEeecCcccceeeee-e-ee-eccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEE
Q psy6984 234 ----------NDIITALCFSPNRSFQKIKLD-I-SR-TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVS 299 (380)
Q Consensus 234 ----------~~~i~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 299 (380)
+.....++++|++........ . .. ........+++..+.+....+.- ......++|+|||+ .+++
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEE
Confidence 111112568887654332221 0 00 00012345888888776554432 23577899999998 4666
Q ss_pred ee-CCCcEEEEeccccee
Q psy6984 300 SS-RDKTIKLWNTLAHCK 316 (380)
Q Consensus 300 ~~-~dg~v~iw~~~~~~~ 316 (380)
.. .+++|.++|+.+.+.
T Consensus 332 ~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEESSSCEE
T ss_pred ccCCCCeEEEEECCCCcE
Confidence 66 589999998755443
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.03 E-value=1.9e-07 Score=88.96 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=99.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeecccCCC---------e--EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984 76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD---------V--LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~---------v--~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~ 144 (380)
+..+++++.++.|+.+|..+|+.+.++...... + ..++. ++..++.++.|+.+..+|..++......
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567888888999999999999998877543210 0 11222 3668888999999999998877665444
Q ss_pred eCC-CcCcEEEEEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEeeeCC---c---------------------
Q psy6984 145 EDG-HSDWVSCVRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKINHSGH---T--------------------- 193 (380)
Q Consensus 145 ~~~-~~~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~---~--------------------- 193 (380)
... +......+...|--....++.+. .++.|..||.++++....+... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 332 11110000001100011344443 3689999999998876554310 0
Q ss_pred -------cceEEEEEcCCCCEEEEEcCCCc-------------------EEEEECCCCcEEEEEE
Q psy6984 194 -------GYLNTVTVSPDGSLCASGGKDMN-------------------AMLWDLNDGKHLHTLV 232 (380)
Q Consensus 194 -------~~i~~~~~~~~~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~~~ 232 (380)
.....++++|++.+++.+..++. |..+|..+|+.+..+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~ 292 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ 292 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee
Confidence 01125788998899988887763 9999999999887765
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=5.5e-08 Score=92.41 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=99.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeecccCCC-----------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984 76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD-----------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~ 144 (380)
+..|+.++.++.|+.+|..+|+.+.++...... ...++. ++..++.++.|+.+..+|..++......
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 567788888899999999999988876543210 112232 4668888899999999998777665544
Q ss_pred eCC-Cc---CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCcc-------------------
Q psy6984 145 EDG-HS---DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTG------------------- 194 (380)
Q Consensus 145 ~~~-~~---~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~------------------- 194 (380)
... .. ..+. ...+. + ..++.++. ++.|+.+|..+++..........
T Consensus 155 ~~~~~~~~~~~~~~~p~v~-~---~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVF-K---GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEE-T---TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred cCCcCcCcCcccccCcEEE-C---CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 432 10 0111 11111 1 23444443 68999999999887665432111
Q ss_pred -------------ceEEEEEcCCCCEEEEEcCCC-------------------cEEEEECCCCcEEEEEE
Q psy6984 195 -------------YLNTVTVSPDGSLCASGGKDM-------------------NAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 195 -------------~i~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~ 232 (380)
....++++|++..+..+..++ .|..+|..+++.+..+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~ 300 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence 113478899988888887664 49999999999887765
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=3.7e-06 Score=74.04 Aligned_cols=226 Identities=11% Similarity=0.039 Sum_probs=132.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT---------KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
++..+++++.++.|..+|..+++.+..+.... ..+.+ ....++..++.++.++.+..+|..++.......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 36788888989999999999998876654321 22222 222346678888999999999987665543332
Q ss_pred CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccce-----EEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL-----NTVTVSPDGSLCASGGKDMNAMLW 220 (380)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~i~ 220 (380)
... ......... ...++.++.++.|..+|..+++............ ...... +..++.+..++.+..+
T Consensus 131 ~~~-~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 131 VAG-EALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp CSS-CCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCC-ceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 211 111111121 2257778889999999999887765554322110 112222 4467778889999999
Q ss_pred ECCCCcEEEEEEecCceEE--------EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984 221 DLNDGKHLHTLVHNDIITA--------LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292 (380)
Q Consensus 221 d~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 292 (380)
|..+++.+.......+... +...|- ...-.+......+.+..++..+++..-... ......+. .
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~--~ 275 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFI--V 275 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEE--E
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCce--E
Confidence 9999998876653321100 000110 000011112234567777777666442211 11222332 3
Q ss_pred cCCEEEEeeCCCcEEEEeccccee
Q psy6984 293 DNRQIVSSSRDKTIKLWNTLAHCK 316 (380)
Q Consensus 293 ~~~~l~s~~~dg~v~iw~~~~~~~ 316 (380)
++..++.++.++.|..+|..++..
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcE
Confidence 567777788899999998765543
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=5.1e-06 Score=69.37 Aligned_cols=220 Identities=9% Similarity=0.004 Sum_probs=135.6
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~ 95 (380)
..+..+++++....++++-...+.|.++++...... ............+++++++..|+.+ ...+.|.++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 345688888864455555566789999987643211 1111122356889999976666555 4567899999875
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
................++++|++..+..+.. .+.|..++.......... .........+++++++.. ++++....
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-~~~~~~P~gia~d~~~~~-lyv~d~~~ 188 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQ-LCWVDAGT 188 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTE-EEEEETTT
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-ECCCCCCcEEEEcCCCCE-EEEEECCC
Confidence 4332222222245789999997666655543 367877776543322222 122345778999986542 45566667
Q ss_pred CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC--ceEEEEeecC
Q psy6984 173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND--IITALCFSPN 245 (380)
Q Consensus 173 ~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~~~~ 245 (380)
+.|..+|+..........+ ......+++. .+.++++....+.|..+|..+++.+..+.... ....+++.|+
T Consensus 189 ~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 8999999976543333332 2345667665 45555666667899999999998877765332 3455555554
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=1.1e-05 Score=67.40 Aligned_cols=248 Identities=11% Similarity=0.049 Sum_probs=137.4
Q ss_pred CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeeecccCCCeEEEEEeCC
Q psy6984 39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD 117 (380)
Q Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 117 (380)
+.|+.+++.............+......+..++++++++.|+.+. .++.|.++++..+...............++++++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 477888776432110000001111123467899999766666554 5689999998766543333322346789999997
Q ss_pred CCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC--CCeEEEEeCCCceeeEeeeCCcc
Q psy6984 118 NRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW--DRMVKVWNLTNCKLKINHSGHTG 194 (380)
Q Consensus 118 ~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~ 194 (380)
+..+. +-...+.|.+++............+ ......++++|++.. ++++... .+.|..+++..............
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~vd~~~g~-lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~ 167 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred CCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccEEEEeeCCCE-EEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence 66555 4456678999887654333332222 245678999985432 3334332 46888888765332222222334
Q ss_pred ceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984 195 YLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273 (380)
Q Consensus 195 ~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (380)
....++++|++.. +++-...+.|..+|+.................++.. +... .......+.+..++..+++
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~l-----yva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNL-----YYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEE-----EEEETTTTEEEEEETTTTE
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEE-----EEEECCCCeEEEEeCCCCC
Confidence 6889999997665 455566789999998754332222222223344332 1110 1112234566677777666
Q ss_pred eeeeeeccc-cceeEEEEeecCC
Q psy6984 274 METPFFSLF-RDVLSVAFSVDNR 295 (380)
Q Consensus 274 ~~~~~~~~~-~~v~~~~~s~~~~ 295 (380)
....+.... .....+++.|++.
T Consensus 241 ~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 241 EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEECCSSCCCCCCEEEECSCC
T ss_pred ceEEEccccccccceeeecCccC
Confidence 554443221 2355667776653
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.86 E-value=1.4e-07 Score=82.29 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=130.5
Q ss_pred cceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCcccccc---cccCCCcceE
Q psy6984 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQK---RLKGHSHFIS 68 (380)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~~---~~~~h~~~v~ 68 (380)
++++.+...++.--..+ .+.++|+ +++++.+. .+++|.+||.........++.. ++. ......
T Consensus 52 D~~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~g~~P~ 127 (368)
T 1mda_H 52 CAGCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-VGPRVH 127 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-BSCCTT
T ss_pred ECCCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-cCCCcc
Confidence 35667777777644445 6999998 45555554 4789999998765433222110 000 012345
Q ss_pred EEEEccCCCEEEEEeC--CCcEEE--EECCCCceeeeecccC-------CCeEEEEEeC---------------------
Q psy6984 69 DIVLSSDGNYALSGSW--DKTLRL--WDLAAGKTTRRFEDHT-------KDVLSVAFSV--------------------- 116 (380)
Q Consensus 69 ~~~~~~~~~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~h~-------~~v~~~~~~~--------------------- 116 (380)
.+.++|||++|+++.. +..|.+ +|..+ +..+..-. +.-.-+++++
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 7899999999998875 356888 88865 22221000 0000011122
Q ss_pred ----------------CCCEEEEEeCCCcEEEEeCCCcceEEE--eeCC-----Cc----CcEEEEEEccCCCCCEEEEE
Q psy6984 117 ----------------DNRQIVSSSRDKTIKLWNTLAHCKFTI--VEDG-----HS----DWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 117 ----------------~~~~~~s~~~d~~v~iwd~~~~~~~~~--~~~~-----~~----~~v~~~~~~~~~~~~~l~s~ 169 (380)
++..++..+. +.+.+.|......... +... .. .....++++|++.. ++++.
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~-lyV~~ 282 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG-IMILT 282 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE-EEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE-EEEEe
Confidence 2222222222 4444445432111000 0000 00 00112678887654 33333
Q ss_pred e---C-----CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEc-CCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984 170 G---W-----DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGG-KDMNAMLWDLNDGKHLHTLVHNDIITA 239 (380)
Q Consensus 170 ~---~-----d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~i~~ 239 (380)
. . ++.+.++|+.+.+....+.... ....++++|||+ .+++.. .++.|.++|+.+.+.+..+........
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~ 361 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES 361 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCE
Confidence 3 2 2356699999988766554332 588899999998 456666 599999999999999888866555555
Q ss_pred EEee
Q psy6984 240 LCFS 243 (380)
Q Consensus 240 ~~~~ 243 (380)
+++.
T Consensus 362 i~~~ 365 (368)
T 1mda_H 362 LSVQ 365 (368)
T ss_dssp EECC
T ss_pred EEee
Confidence 5543
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=5.8e-07 Score=77.53 Aligned_cols=263 Identities=13% Similarity=0.038 Sum_probs=145.7
Q ss_pred cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984 15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA 94 (380)
Q Consensus 15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 94 (380)
+...+.++...++ ..+..++.+ +..+|... ... ..............+. +..+..++.++.|..+|..
T Consensus 58 ~~~~~~~~~~~~~--g~l~v~t~~--l~~~d~~g-~~~-----~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~ 125 (330)
T 3hxj_A 58 GEIIECRPSIGKD--GTIYFGSDK--VYAINPDG-TEK-----WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD 125 (330)
T ss_dssp GGEEEECCEETTT--TEECCSSCE--EEEECCCG-GGG-----GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT
T ss_pred CCCcccceEEecC--CcEEEecCc--EEEECCCC-cEE-----EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC
Confidence 3344566666544 345555544 77776421 111 1111111112223333 5578888889999999988
Q ss_pred CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984 95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174 (380)
Q Consensus 95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 174 (380)
++...........+.++...+++. +..++.++.+..+|.. +....... .....+.++.+.+++. +..++ +.
T Consensus 126 -g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~---l~v~t--~~ 196 (330)
T 3hxj_A 126 -GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT---IYFGS--DK 196 (330)
T ss_dssp -SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC---EEEES--SS
T ss_pred -CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE---EEEEe--CE
Confidence 777666655555566667777776 5567788899999976 44333322 2233455566654432 44444 78
Q ss_pred EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc-eEEEEeecCcccceeee
Q psy6984 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI-ITALCFSPNRSFQKIKL 253 (380)
Q Consensus 175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~ 253 (380)
|..+| .+++...........+.++..+++|.+. .++.++.+..+|. +++.+........ +..+...+++.
T Consensus 197 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~------ 267 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT------ 267 (330)
T ss_dssp EEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC------
T ss_pred EEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe------
Confidence 89999 6655555544444567788888887654 4566778888874 5665555443222 22233332222
Q ss_pred eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
+.....++.+..++. +++....+......+.++...++++. ..++.+|.+++..
T Consensus 268 -l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 268 -IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALF 321 (330)
T ss_dssp -EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred -EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence 111222345666654 34433322222334556666667765 4477889888764
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.82 E-value=2e-06 Score=75.69 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=137.0
Q ss_pred CCCCCeEEEeeCCCeEEEeecCCCCCCcccccccc-----c-C-CCcceEEEEEccCCCEEEEEeCC------CcEEEEE
Q psy6984 26 PKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-----K-G-HSHFISDIVLSSDGNYALSGSWD------KTLRLWD 92 (380)
Q Consensus 26 ~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~-----~-~-h~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd 92 (380)
++...+++++..++.|.+.|+..+.....+ .+.. . . -...-..+..+|+| .++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~-~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKI-IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEE-EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCcee-eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 554445777888999999998644221111 1111 0 0 01123456778999 77766555 7899999
Q ss_pred CCCCceeeeecccCCC---eEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCcceEEEeeCC-Cc
Q psy6984 93 LAAGKTTRRFEDHTKD---VLSVAFSVDNRQIVSSS-------------------RDKTIKLWNTLAHCKFTIVEDG-HS 149 (380)
Q Consensus 93 ~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~s~~-------------------~d~~v~iwd~~~~~~~~~~~~~-~~ 149 (380)
..+++.+.++..-..+ -..+.|+|+++.+++.. .+.+|.+||+.+......+..+ ..
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888633222 23578899999888885 3689999998776554444433 11
Q ss_pred CcEEEEEE--ccCCCCCEEEEEe-----CCCeEEEEeCCCceeeEe----eeCC----------------ccceEEEEEc
Q psy6984 150 DWVSCVRF--SPNHQNPIIVSAG-----WDRMVKVWNLTNCKLKIN----HSGH----------------TGYLNTVTVS 202 (380)
Q Consensus 150 ~~v~~~~~--~~~~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~----~~~~----------------~~~i~~~~~~ 202 (380)
.....++| +|+++. .++++. .+++|.+|....+..... .... ...+..+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~-aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLM-GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCE-EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCE-EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445666 776653 344455 677887765543321111 1110 1346788999
Q ss_pred CCCCEEEEEcC-CCcEEEEECCCC---cEEEEEEecC---------------ceEEEEeecCcccce
Q psy6984 203 PDGSLCASGGK-DMNAMLWDLNDG---KHLHTLVHND---------------IITALCFSPNRSFQK 250 (380)
Q Consensus 203 ~~~~~l~~~~~-d~~i~i~d~~~~---~~~~~~~~~~---------------~i~~~~~~~~~~~~~ 250 (380)
|||++|.++.. .+.|.+||+... +.+..+.... ....++++|++++..
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 99998766554 689999998533 4444444331 256777888776543
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.80 E-value=5.6e-06 Score=75.51 Aligned_cols=190 Identities=11% Similarity=0.054 Sum_probs=123.9
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc--cCCCCCEEEEEe------------------CCCe
Q psy6984 116 VDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS--PNHQNPIIVSAG------------------WDRM 174 (380)
Q Consensus 116 ~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~------------------~d~~ 174 (380)
+||+++.... .+..|.+-|+...+...++..........+++. |++. +++.++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc--EEEEecccccccCCCCcccccccccCce
Confidence 3788776655 456799999887665554443444457788873 6654 455442 3467
Q ss_pred EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC--------------------------------------c
Q psy6984 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM--------------------------------------N 216 (380)
Q Consensus 175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------------------------------~ 216 (380)
+.+.|..+.+......--. ....++++|+|+++++.+.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999887766554211 346678999999988887553 4
Q ss_pred EEEEECCC--CcE-EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee-----------eeeeeccc
Q psy6984 217 AMLWDLND--GKH-LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-----------ETPFFSLF 282 (380)
Q Consensus 217 i~i~d~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 282 (380)
+.+.|..+ ++. +..+........+.++|++++.... ......+.++++...+. ...-....
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-----~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-----GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-----CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-----CCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 67777776 444 4555556667788899998875432 23456677888774421 11111222
Q ss_pred cceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984 283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA 313 (380)
Q Consensus 283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 313 (380)
...+-++|+|+|...++.-.|++|..|++.+
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3467889999994445556699999999755
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=2.5e-05 Score=64.42 Aligned_cols=158 Identities=12% Similarity=0.060 Sum_probs=105.6
Q ss_pred ceEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeeeecccCC-CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceE
Q psy6984 66 FISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRRFEDHTK-DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~ 141 (380)
+...+.|++|+.+.++.+. ++.|+++|+.+++.+..+.--.. -...+++. +..+. +.-.++.+.++|..+....
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4578999998755555443 57999999999999887642111 22345554 44554 5557889999998776555
Q ss_pred EEeeCC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC-----ccceEEEEEcCCCCEEEEEcCCC
Q psy6984 142 TIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH-----TGYLNTVTVSPDGSLCASGGKDM 215 (380)
Q Consensus 142 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~ 215 (380)
..+..+ ... ..+++++.. ++++. .++.|.++|..+.+......-. ...++.+.+. +|+.++....++
T Consensus 100 ~~i~~g~~~g----~glt~Dg~~-l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~ 172 (266)
T 2iwa_A 100 KNFTHQMKDG----WGLATDGKI-LYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD 172 (266)
T ss_dssp EEEECCSSSC----CEEEECSSS-EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred EEEECCCCCe----EEEEECCCE-EEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence 555433 222 234555543 44444 5789999999987765544311 1246788888 777777777789
Q ss_pred cEEEEECCCCcEEEEEE
Q psy6984 216 NAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 216 ~i~i~d~~~~~~~~~~~ 232 (380)
.|.+.|..+++.+..+.
T Consensus 173 ~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 173 CIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcEEEEEE
Confidence 99999999998776654
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.75 E-value=0.00021 Score=69.47 Aligned_cols=323 Identities=10% Similarity=0.090 Sum_probs=180.8
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccc-cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQK-RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 93 (380)
...|.+|...++ + .+..++.++-+..|+....... +..... ...-....|.++...++|.+.+ |..+ -|.+||.
T Consensus 214 ~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSP-T-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEET-T-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcCC-C-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 356777776554 3 3444554444777875432111 000000 0011235699999988887555 4444 5899998
Q ss_pred CCCceeeeecc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC-----CCcCcEEEEEEccCC
Q psy6984 94 AAGKTTRRFED-------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED-----GHSDWVSCVRFSPNH 161 (380)
Q Consensus 94 ~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 161 (380)
.+++....... ....|.++...++|.. ..|+.++-|..|+............ -....|.++...+++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 77654432211 2356999999988875 4566666788887543322111110 123458888877654
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeC--------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSG--------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV- 232 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 232 (380)
. |..|+.++-|..||..+.+....... ....|.++..+++|+.|..|+.++-|..+|..+++......
T Consensus 369 ~---lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 369 N---LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp C---EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred C---EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 3 66677777899999876554332111 13568899999999856677777789999988776433221
Q ss_pred ----ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec------cccceeEEEEeecCCEEEEeeC
Q psy6984 233 ----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS------LFRDVLSVAFSVDNRQIVSSSR 302 (380)
Q Consensus 233 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~ 302 (380)
....|.++...+++..- .... ..+..++..+++....... ....|.++...++|+..+...
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lw-------igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~- 516 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLW-------LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE- 516 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEE-------EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred CCCcCCCeeEEEEECCCCCEE-------EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence 12346666655544321 1111 4566777665544322111 124578888888888766544
Q ss_pred CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 303 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
+ -+..|+...+.. . ..... .........+.++...++|++.++. ..| +..|+.
T Consensus 517 ~-Gl~~~~~~~~~~-~------------~~~~~--~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d~ 569 (795)
T 4a2l_A 517 E-GLSVFKQEGLDI-Q------------KASIL--PVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFNE 569 (795)
T ss_dssp S-CEEEEEEETTEE-E------------ECCCS--CSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEET
T ss_pred C-ceEEEeCCCCeE-E------------EecCC--CCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeECC
Confidence 4 466676433221 1 10000 0000112356778888888866543 344 556653
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=3.8e-06 Score=79.71 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=98.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeecccCCC----------e-EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984 76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD----------V-LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV 144 (380)
Q Consensus 76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~ 144 (380)
+..++.++.++.|+.+|..+|+.+.++...... + ..++. ++..++.++.|+.+..+|..++......
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 567888888999999999999988776532210 0 11222 3567888889999999998777665444
Q ss_pred eCCCc---CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCC---c------------------
Q psy6984 145 EDGHS---DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGH---T------------------ 193 (380)
Q Consensus 145 ~~~~~---~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~---~------------------ 193 (380)
..... ..+. ...+. + ..++.+.. ++.|..+|.++++....+... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~---~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K---GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T---TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ccCCCCCcceecCCCEEE-C---CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 33211 0011 01111 1 23444432 589999999998876655321 0
Q ss_pred ----------cceEEEEEcCCCCEEEEEcCCC-------------------cEEEEECCCCcEEEEEEe
Q psy6984 194 ----------GYLNTVTVSPDGSLCASGGKDM-------------------NAMLWDLNDGKHLHTLVH 233 (380)
Q Consensus 194 ----------~~i~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~ 233 (380)
.....++++|++..+..+..++ .|..+|..+++.+..+..
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~ 288 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence 0112468888888888887765 399999999998877753
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=5.2e-05 Score=62.50 Aligned_cols=222 Identities=8% Similarity=0.029 Sum_probs=125.5
Q ss_pred eeeeecccCCC--eEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
.+.++ .|... ...+.|++++.+.++.+. ++.|.+.|..++.....+..+.......+.+.. . .++++.-.++
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~-~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--E-KLYQVVWLKN 86 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--T-EEEEEETTCS
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--C-EEEEEEecCC
Confidence 34444 34432 578999998755555443 679999998887666554432222334455542 2 2455556688
Q ss_pred eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeee
Q psy6984 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL 253 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 253 (380)
.+.++|..+.+....++..... ...+++||+.++++..++.|.++|..+.+.+..+..... +
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---------~------- 148 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---------G------- 148 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---------T-------
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---------C-------
Confidence 9999999988776665422111 233566777776777789999999988776655432110 0
Q ss_pred eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984 254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP 333 (380)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 333 (380)
+. ......+.|. +++.++....++.|.+-|..++.....++.... .+
T Consensus 149 -------------------~p-------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~------~~ 195 (266)
T 2iwa_A 149 -------------------HR-------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNL------RK 195 (266)
T ss_dssp -------------------EE-------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH------HH
T ss_pred -------------------cc-------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc------cc
Confidence 00 0012234555 565555544566776666554444333332110 00
Q ss_pred ccccccCCCCCCceEEEEEecCCCEEE-EEeeCCeEEEEEeee
Q psy6984 334 DVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVSV 375 (380)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~-~g~~dg~v~iw~~~~ 375 (380)
+.. ............++|+|+++.++ ++...+.|.+-++..
T Consensus 196 ~~~-~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 196 KLI-DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHH-HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccc-cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 000 00011112346899999987655 565788787776643
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.68 E-value=0.00035 Score=67.90 Aligned_cols=275 Identities=10% Similarity=0.010 Sum_probs=161.0
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 95 (380)
..|.+|...++ + .|..|+.++-|..|+....... +........-....|.++...++|+ |-.|..++-|..||..+
T Consensus 310 ~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 56888888765 3 4555776677888875432211 0000000011235689999888887 44577777899999877
Q ss_pred Cceeeeecc--------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---CCcCcEEEEEEccCCCCC
Q psy6984 96 GKTTRRFED--------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---GHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 96 ~~~~~~~~~--------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 164 (380)
++....... ....|.++...+++..+..|+.++-+..+|..++........ .....|.++...+++.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-- 464 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-- 464 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--
Confidence 654432211 135688999888888566777777799998765443222110 1235688888766442
Q ss_pred EEEEEeCCCeEEEEeCCCceeeEeeeC------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE------
Q psy6984 165 IIVSAGWDRMVKVWNLTNCKLKINHSG------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV------ 232 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------ 232 (380)
|..|+. +-+..||..+.+....... ....|.++..+++|++.+... +-+..||..+++. .+.
T Consensus 465 -lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~ 538 (795)
T 4a2l_A 465 -LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS 538 (795)
T ss_dssp -EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC
T ss_pred -EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC
Confidence 444444 4588899877654332211 235688999999998766544 4688898876654 221
Q ss_pred --ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee--ecc-ccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 233 --HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF--FSL-FRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 233 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
....+.++...+++..-. ... ..+..++...++...-. .+. ...|.++...++|+..+++ .. -|.
T Consensus 539 ~l~~~~i~~i~~d~~g~lWi-------gT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~ 608 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGIIWV-------GTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GIS 608 (795)
T ss_dssp GGGGSCEEEEEECTTSCEEE-------EES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEE
T ss_pred CCCCCeeEEEEECCCCCEEE-------EeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceE
Confidence 123456666555543211 111 25666666555433211 111 2347778888888876655 33 455
Q ss_pred EEecc
Q psy6984 308 LWNTL 312 (380)
Q Consensus 308 iw~~~ 312 (380)
.|+..
T Consensus 609 ~~~~~ 613 (795)
T 4a2l_A 609 CFNPE 613 (795)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 66643
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=3.6e-05 Score=73.09 Aligned_cols=283 Identities=9% Similarity=0.067 Sum_probs=157.2
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCccccccc----ccCCC-cce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHS-HFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~----~~~h~-~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 102 (380)
+..++.++.++.|..+|....+......... ..... ..+ ..+.+ ++..++.++.|+.|..+|..+|+.+.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 3467777778888888765443322111100 00000 001 11222 3568888999999999999999988776
Q ss_pred cccC----CCeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCC--CcC-------------------
Q psy6984 103 EDHT----KDVLS-VAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDG--HSD------------------- 150 (380)
Q Consensus 103 ~~h~----~~v~~-~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~--~~~------------------- 150 (380)
.... ..+.+ ... .++ .++.+.. ++.|..+|..++......... ...
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 011 134 4444432 588999998777665444311 000
Q ss_pred ---------cEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-------
Q psy6984 151 ---------WVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT------- 193 (380)
Q Consensus 151 ---------~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~------- 193 (380)
....+++.|.. .+++.+..++ .|..+|.++++....+.. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 00135666643 3566665555 499999999988766553 21
Q ss_pred cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEecC-------------ce--------------------
Q psy6984 194 GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVHND-------------II-------------------- 237 (380)
Q Consensus 194 ~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~i-------------------- 237 (380)
.++....+..+|+ .++.++.+|.++++|..+|+.+....... ++
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 2222223334665 68899999999999999999875443211 00
Q ss_pred ----EEEEeecCcccceeee--------------------eee----------eeccccceEEEEcCCceeeeeeecccc
Q psy6984 238 ----TALCFSPNRSFQKIKL--------------------DIS----------RTLQKSNLILYPINHGKMETPFFSLFR 283 (380)
Q Consensus 238 ----~~~~~~~~~~~~~~~~--------------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (380)
..++++|+.....+.. ... .....+.+..++..+++..=.... ..
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~ 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PT 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SS
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CC
Confidence 0123344321110000 000 001125577788888876433221 22
Q ss_pred ceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984 284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 318 (380)
Q Consensus 284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 318 (380)
......+...+.+++.++.||.++.||..++..+.
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 33344556678889999999999999876655443
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=0.00017 Score=61.82 Aligned_cols=238 Identities=8% Similarity=-0.009 Sum_probs=132.2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-------------------ccCCCeEEEEEeC-CCCEEEEEeC
Q psy6984 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-------------------DHTKDVLSVAFSV-DNRQIVSSSR 126 (380)
Q Consensus 67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~h~~~v~~~~~~~-~~~~~~s~~~ 126 (380)
..++++.++++++.++..++.|..||..+++...... .....+..+++.+ +++ |+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 4578889999878888889999999987654432110 0113578899998 554 555544
Q ss_pred CCcEEEEeCCCcceEEEee--CC-CcCcEEEEEEcc-CCCCCEEEEEeC-----------------CCeEEEEeCCCcee
Q psy6984 127 DKTIKLWNTLAHCKFTIVE--DG-HSDWVSCVRFSP-NHQNPIIVSAGW-----------------DRMVKVWNLTNCKL 185 (380)
Q Consensus 127 d~~v~iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~-~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~ 185 (380)
.+.+..+|..++....... .+ .......+++.+ ++. ++++... ++.|..||..+.+.
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 4558888865432211111 11 113467788888 653 4444322 36788888876554
Q ss_pred eEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCCc--EEEEE-EecCceEEEEeecCcccceeeeeeeee---
Q psy6984 186 KINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDGK--HLHTL-VHNDIITALCFSPNRSFQKIKLDISRT--- 258 (380)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 258 (380)
..... .....+.++++|+|+.|. +-...+.|..|++.... ....+ .... ...+++.+++.+..........
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 32222 123467799999998554 44667899999987421 11122 1223 6677777776432221110000
Q ss_pred -ccccceEEEEcCCceeeeeeecc----ccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984 259 -LQKSNLILYPINHGKMETPFFSL----FRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311 (380)
Q Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 311 (380)
.....+..++.. ++....+... ...+..+++ .+++++++....+.|..++.
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 001234444432 3333222211 233555655 46666666556777777764
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=7.1e-05 Score=64.24 Aligned_cols=240 Identities=12% Similarity=0.074 Sum_probs=133.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC------------------CcCcEEEEEEcc-CCCCCEEEE
Q psy6984 108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG------------------HSDWVSCVRFSP-NHQNPIIVS 168 (380)
Q Consensus 108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~~~l~s 168 (380)
...+++++++++.+.++..++.|..|+............. .......+++.+ ++ .|+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g---~l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN---QLYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT---EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC---cEEE
Confidence 3456788999887888888899999986554332222110 012467888886 43 3555
Q ss_pred EeCCCeEEEEeCCCceeeEee---eC-CccceEEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCCc
Q psy6984 169 AGWDRMVKVWNLTNCKLKINH---SG-HTGYLNTVTVSP-DGSLCASGGK-----------------DMNAMLWDLNDGK 226 (380)
Q Consensus 169 ~~~d~~v~iwd~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~ 226 (380)
+...+.|..+|..+....... .+ ....++.+++++ +|++.++-.. ++.|..+|..+++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 555566888887755432211 11 123478899999 9987776432 3678899987765
Q ss_pred EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee--eeeeeccccceeEEEEeecCCEEEEeeC--
Q psy6984 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM--ETPFFSLFRDVLSVAFSVDNRQIVSSSR-- 302 (380)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 302 (380)
.......-.....++++|++....+. ......+..++...... ...+..... ...+++.++|++.++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~-----d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVA-----EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEE-----EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred EEEeccCCccCcceEECCCCCEEEEE-----eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence 43332222445678888886532211 11235666777653211 011111122 567888888887666543
Q ss_pred --------CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 303 --------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 303 --------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
.+.|..++.. +..+..+.... ......+..+++ .+|+++++...++.|.++++.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----------------g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPP----------------PFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCT----------------TTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCC----------------CCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 3455555532 21111111100 000112334555 467766666678889888864
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.59 E-value=0.00014 Score=61.92 Aligned_cols=226 Identities=8% Similarity=0.020 Sum_probs=132.0
Q ss_pred eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984 4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS 83 (380)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 83 (380)
+..++...+... .....+++.++ +.++++-..++.|..|+..... . . ...-......+++.++|+++++..
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~--~--~---~~~~~~~p~gia~~~dG~l~vad~ 90 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQ--Q--I---HATVEGKVSGLAFTSNGDLVATGW 90 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCE--E--E---EEECSSEEEEEEECTTSCEEEEEE
T ss_pred CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCCce--E--E---EEeCCCCceeEEEcCCCcEEEEec
Confidence 445677777543 56778999986 5666666678898888764321 0 0 111123578899999999666554
Q ss_pred CCC--cEEEEECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-eEEEee--------CCCcCc
Q psy6984 84 WDK--TLRLWDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVE--------DGHSDW 151 (380)
Q Consensus 84 ~d~--~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~--------~~~~~~ 151 (380)
... .|..+|..+++....... .......++..+++..+++...++.|..+|..... ...... ......
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 432 477778777765433221 11223445555555545555567888888865431 111100 011123
Q ss_pred EEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-cee--eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
.+.+ ++++. .++++-...+.|..+++.. ++. ...+. .......++++++|+++++....+.|.++|.. ++..
T Consensus 171 pngi--s~dg~-~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 171 ANGL--KRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEEE--EEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred CCCc--CcCCC-EEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 4445 56543 3556666778999999864 221 01111 11345678999999988877778899999975 5543
Q ss_pred EE--EEec-CceEEEEee
Q psy6984 229 HT--LVHN-DIITALCFS 243 (380)
Q Consensus 229 ~~--~~~~-~~i~~~~~~ 243 (380)
.. +... ....+++|.
T Consensus 246 ~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EEECGGGTCTTEEEEEEC
T ss_pred EEeecccccCCceEEEEe
Confidence 22 2222 446777776
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=5.8e-05 Score=61.56 Aligned_cols=174 Identities=17% Similarity=0.180 Sum_probs=115.7
Q ss_pred cceEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceE
Q psy6984 65 HFISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~ 141 (380)
.+...+.|+ ++.+..+.+.+| .|+++|+.+++.+..+.-. .........+++..+.. .-.++.+.++|..+....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 345678888 677777777766 8999999999998887543 33433333344555554 446889999998776665
Q ss_pred EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----Cc-cceEEEEEcCCCCEEEEEcCCCc
Q psy6984 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HT-GYLNTVTVSPDGSLCASGGKDMN 216 (380)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~-~~i~~~~~~~~~~~l~~~~~d~~ 216 (380)
..+..+... ..+++++. .++++- .++.|.++|..+.+......- .. ..++.+.+. +|+.++..-.+..
T Consensus 121 ~ti~~~~eG----~glt~dg~-~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDGEG----WGLTHNDQ-YLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSSCC----CCEEECSS-CEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCc----eEEecCCC-EEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 554433222 22234443 244443 467899999998776554332 11 345667776 7877777778899
Q ss_pred EEEEECCCCcEEEEEEec-------------CceEEEEeecCcc
Q psy6984 217 AMLWDLNDGKHLHTLVHN-------------DIITALCFSPNRS 247 (380)
Q Consensus 217 i~i~d~~~~~~~~~~~~~-------------~~i~~~~~~~~~~ 247 (380)
|.+.|..+++.+..+... +..+.++++|+..
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 999999999998887542 2346777777654
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.58 E-value=0.0002 Score=60.90 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=125.8
Q ss_pred cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEE
Q psy6984 65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFT 142 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~ 142 (380)
.....++++++++++++-..++.|..||.... ....+. ....+..++++++++++++..... .+..+|...+....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 34678999999997777768899999998653 333322 234688999999999766654432 36556654443332
Q ss_pred EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-e---------eCCccceEEEEEcCCCCEE-EEE
Q psy6984 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-H---------SGHTGYLNTVTVSPDGSLC-ASG 211 (380)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~---------~~~~~~i~~~~~~~~~~~l-~~~ 211 (380)
............++..+++ ..+++-..++.|..+|....+.... . .+.....+.+ +|+++.| ++-
T Consensus 110 ~~~~~~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeCCCccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 2222222223444444322 2344444578899999865421111 0 0111235555 7887654 555
Q ss_pred cCCCcEEEEECCC-CcE--EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee--eeecccccee
Q psy6984 212 GKDMNAMLWDLND-GKH--LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET--PFFSLFRDVL 286 (380)
Q Consensus 212 ~~d~~i~i~d~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~ 286 (380)
...+.|..+++.. ++. ...+........+++.+++.+... ....+.+.+++.. ++... ..........
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va------~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA------THIYNSVVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE------CBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE------eCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence 6678999999864 321 111211233455666666643111 1124556666654 43321 1111224578
Q ss_pred EEEEe---ecCCEEEEeeCC
Q psy6984 287 SVAFS---VDNRQIVSSSRD 303 (380)
Q Consensus 287 ~~~~s---~~~~~l~s~~~d 303 (380)
+++|. |+++.|+.++..
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEECCSTTTTTEEEEEECT
T ss_pred EEEEecccCCCCEEEEECCC
Confidence 89998 787776665543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=0.00014 Score=67.57 Aligned_cols=155 Identities=9% Similarity=0.010 Sum_probs=93.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccC--C--CeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT--K--DVLS-VAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~--~--~v~~-~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~ 143 (380)
++..++.++.|+.|..+|..+++.+.+..... . .+.+ ... .++ .++.++. ++.|..+|..++.....
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 35688889999999999999999887654211 0 1111 111 134 4555554 78999999877666544
Q ss_pred eeCCCcC------------------------------------cE-EEEEEccCCCCCEEEEEeCC--------------
Q psy6984 144 VEDGHSD------------------------------------WV-SCVRFSPNHQNPIIVSAGWD-------------- 172 (380)
Q Consensus 144 ~~~~~~~------------------------------------~v-~~~~~~~~~~~~~l~s~~~d-------------- 172 (380)
....... .+ ..+++.+.. ..++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~--g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL--NLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC--CeEEEECCCCccccCCccCCCce
Confidence 3321100 00 113444432 234444321
Q ss_pred --CeEEEEeCCCceeeEeeeC--Cc-------cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984 173 --RMVKVWNLTNCKLKINHSG--HT-------GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVH 233 (380)
Q Consensus 173 --~~v~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~ 233 (380)
+.|..+|.++++....++. |. ....-+...++|+ .++.++.+|.++++|..+++.+.....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 3689999999887765542 11 1111122234674 677899999999999999998876643
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.56 E-value=0.00016 Score=67.34 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=111.0
Q ss_pred CeEEEeeC-CCeEEEeec-CCCCCCcccccccc-------cCCCcceEEEEEccCCCE----EEEEeCCCcEEEEECCCC
Q psy6984 30 DTILSCSR-DNTLIIWKL-TRDDTNYGVPQKRL-------KGHSHFISDIVLSSDGNY----ALSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 30 ~~l~t~~~-dg~v~vw~~-~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~~ 96 (380)
..++.++. ++.|.-+|. ...+.........- .++ .....++++|.+.. ++.++.|+.|..+|..+|
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 45666666 777777776 44332221111000 000 00122445444444 888999999999999999
Q ss_pred ceeeeecccC----CCeEE-EEEeCCCCEEEEEe------CCCcEEEEeCCCcceEEEeeCCCcC---------------
Q psy6984 97 KTTRRFEDHT----KDVLS-VAFSVDNRQIVSSS------RDKTIKLWNTLAHCKFTIVEDGHSD--------------- 150 (380)
Q Consensus 97 ~~~~~~~~h~----~~v~~-~~~~~~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~--------------- 150 (380)
+.+.+..... ..+.+ ... .++ .++.++ .++.|..+|..++............
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9887654221 01111 111 134 455544 3789999998877665443322110
Q ss_pred ---------------------cEE-EEEEccCCCCCEEEEEeCC----------------CeEEEEeCCCceeeEeeeCC
Q psy6984 151 ---------------------WVS-CVRFSPNHQNPIIVSAGWD----------------RMVKVWNLTNCKLKINHSGH 192 (380)
Q Consensus 151 ---------------------~v~-~~~~~~~~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~ 192 (380)
.++ ...+.+.. .+++.+..+ ..|..+|.++++....++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 000 12333332 345555443 47999999998887655432
Q ss_pred cc---------ceEEEEEc-CCC---CEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 193 TG---------YLNTVTVS-PDG---SLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 193 ~~---------~i~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
.. ...-+... .+| ..++.++.+|.++++|..+++.+....
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 11 11112222 567 467789999999999999999887654
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.54 E-value=3.6e-06 Score=76.77 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=142.4
Q ss_pred eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE-c-cCCCEEEEEeC------------------CCcEEE
Q psy6984 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL-S-SDGNYALSGSW------------------DKTLRL 90 (380)
Q Consensus 31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~l~s~~~------------------d~~i~v 90 (380)
.+++...++.|.+-|+....... + ..+. .......+++ + |+++++++++. ++.+.+
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~-i--i~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDA-I--LEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEE-E--EECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCceEee-E--EeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 34444456678888876432111 0 0111 1224667887 5 99999998852 357899
Q ss_pred EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--------------------------------------cEEE
Q psy6984 91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--------------------------------------TIKL 132 (380)
Q Consensus 91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--------------------------------------~v~i 132 (380)
.|..+.+...++.--. ....++++|+|+++++++.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999888877765322 345678999999999888543 2444
Q ss_pred EeCCC--cce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce------------eeEeeeCCccceE
Q psy6984 133 WNTLA--HCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK------------LKINHSGHTGYLN 197 (380)
Q Consensus 133 wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~~~~~i~ 197 (380)
.|..+ ... ...+..+ ....++.++|+++. +++++..+.+|.++|+.+.+ ...... -.....
T Consensus 259 ID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~ 334 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL 334 (595)
T ss_dssp EECSGGGCCSSEEEEEEE--SSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred EeCcccCCceeEEEEecC--CCceEEEEcCCCCE-EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence 44443 111 1111111 12357899998764 56677778999999998652 111221 224578
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCC----------CcEEEEEEecCceE------EEEeecCcccceeeeeeee--e-
Q psy6984 198 TVTVSPDGSLCASGGKDMNAMLWDLND----------GKHLHTLVHNDIIT------ALCFSPNRSFQKIKLDISR--T- 258 (380)
Q Consensus 198 ~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~~~~--~- 258 (380)
.++|+|+|...++.-.|++|.+||+.. .+.+..+.....+- ...++|++++......... -
T Consensus 335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~ 414 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFL 414 (595)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSC
T ss_pred eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccc
Confidence 899999996666788899999999976 45666665433321 2234677776544333221 0
Q ss_pred ----ccccceEEEEcCCceee
Q psy6984 259 ----LQKSNLILYPINHGKME 275 (380)
Q Consensus 259 ----~~~~~~~~~~~~~~~~~ 275 (380)
+.-.+-.++++..++|.
T Consensus 415 ~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 415 NVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCCSSCCEEEEEEECSSSSCE
T ss_pred cCCCCCCCcceEEEcCCCcEE
Confidence 01112377888766654
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.53 E-value=5.2e-05 Score=61.89 Aligned_cols=173 Identities=11% Similarity=0.134 Sum_probs=115.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEE
Q psy6984 65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTI 143 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~ 143 (380)
.+...+.|+ ++.+..+.+.+|.|+++|+.+++.++.+ -..........+++. ..+..-.++.+.+||..+......
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345678887 4667778888899999999999998877 333443322333444 444555789999999877666555
Q ss_pred eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--C---ccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--H---TGYLNTVTVSPDGSLCASGGKDMNAM 218 (380)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~d~~i~ 218 (380)
+...... ..++ +++. .|+.+..++.|.++|..+.+......- + ...++.+.+. +|+.++..-.+..|.
T Consensus 132 i~~~~eG--wGLt--~Dg~--~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYSGEG--WGLC--YWNG--KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECSSCC--CCEE--EETT--EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCCCce--eEEe--cCCC--EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 4433222 2333 3333 354444588999999998776554432 1 1245677776 777777776788999
Q ss_pred EEECCCCcEEEEEEec--------------CceEEEEeecCcc
Q psy6984 219 LWDLNDGKHLHTLVHN--------------DIITALCFSPNRS 247 (380)
Q Consensus 219 i~d~~~~~~~~~~~~~--------------~~i~~~~~~~~~~ 247 (380)
+.|..+++.+..+... +..+.++++|+..
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence 9999999998887532 2446777777543
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.51 E-value=0.00017 Score=58.85 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=81.4
Q ss_pred eeeeecccCCC--eEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
.++++ .|... ...+.|+ ++.+..+++.+| .|+.+|+.++.............-..+.+. +. .++...-.++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~-~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KD-KIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CC-EEEEEEeeCC
Confidence 45555 35443 3788898 676677777766 899999888766655543322222334443 22 2444455588
Q ss_pred eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
.+.++|..+.+....++-.. .-+. +.++++.|+.+..++.|.++|..+.+.+..+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred EEEEEECccCcEEEEEECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 99999999988776665322 2223 3456776666666889999999988776554
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.51 E-value=1.6e-05 Score=75.49 Aligned_cols=158 Identities=9% Similarity=0.084 Sum_probs=86.8
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCceee--eecc-cCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q psy6984 69 DIVLSS-DGNYALSGSWDK-----------TLRLWDLAAGKTTR--RFED-HTKDVLSVAFSVDNRQIVSSS-RDKTIKL 132 (380)
Q Consensus 69 ~~~~~~-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~~~s~~-~d~~v~i 132 (380)
.+++.+ +++.++.|+.+. .+.+||..+++-.. .+.. +.....++++.+++..++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 888888887653 58899998875332 2211 222233567788999999988 4558999
Q ss_pred EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CC-----CeEEEEeCCCceeeEee----eCCccceEEEEEc
Q psy6984 133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WD-----RMVKVWNLTNCKLKINH----SGHTGYLNTVTVS 202 (380)
Q Consensus 133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----~~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~ 202 (380)
||..+..-...........-.++++.+++ .+++.|+ .+ ..+.+||..+.+-.... ......-....+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred ecCcCCceeECCCCCccccccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 99765432211111111222344555544 3667776 34 56899999876533210 0000000001123
Q ss_pred CCCCEEEEEcCCC---------cEEEEECCCCcEE
Q psy6984 203 PDGSLCASGGKDM---------NAMLWDLNDGKHL 228 (380)
Q Consensus 203 ~~~~~l~~~~~d~---------~i~i~d~~~~~~~ 228 (380)
.++..++.|+.++ .+..||..+....
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~ 382 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 382 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence 4555556665544 4577887766533
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.47 E-value=0.00028 Score=57.79 Aligned_cols=205 Identities=12% Similarity=0.143 Sum_probs=125.9
Q ss_pred EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984 10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR 89 (380)
Q Consensus 10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 89 (380)
..|.|-.+.+..|+++|+...+++....++.|...|.. ......++ +.+. .....+++.+++.++++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~---l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP---LDFV-KDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---CSSC-SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---cCCC-CChHHeEEeCCCEEEEEECCCCcEE
Confidence 56778878899999999743344446667777766654 22111111 2222 3467888888887777766678899
Q ss_pred EEECCCCce---eeeec------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CcceEEEee------CCCcCc
Q psy6984 90 LWDLAAGKT---TRRFE------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---AHCKFTIVE------DGHSDW 151 (380)
Q Consensus 90 vwd~~~~~~---~~~~~------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---~~~~~~~~~------~~~~~~ 151 (380)
++++..... +.... ......-.++++|++..|.++.......+|... ......... ..+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 998765432 12221 123446899999999877776655555555432 111122221 112234
Q ss_pred EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CC------ccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GH------TGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
+..++++|... .+++.....+.+..+|.... ....+. +. ......++|+++|+++++ +.-+.++.+.-
T Consensus 175 ~S~l~~dp~tg-~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 175 VSGAEFNQQKN-TLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCEEEEETTTT-EEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ceeEEEcCCCC-eEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 67899999754 35566666788889997754 322222 11 136788999999987666 55556666643
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.44 E-value=9.1e-05 Score=68.87 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=92.5
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceeeeecccCC-C----------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984 76 GNYALSGSW-DKTLRLWDL-AAGKTTRRFEDHTK-D----------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142 (380)
Q Consensus 76 ~~~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~-~----------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~ 142 (380)
+..++.++. ++.|.-+|. .+++.+.++..... . -..++. ++..++.++.|+.+..+|..++....
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 889999999 89988877643211 0 011222 35678888889999999987766654
Q ss_pred EeeCCC-c--CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCccc-----------------
Q psy6984 143 IVEDGH-S--DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTGY----------------- 195 (380)
Q Consensus 143 ~~~~~~-~--~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~----------------- 195 (380)
...... . ..+. ...+. + ..++.++. ++.|..+|.++++...........
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~---g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K---DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T---TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EecCCCCCccceeccCCEEE-C---CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 433221 0 0111 11111 1 24555544 789999999998876554321100
Q ss_pred --------------------e-EEEEEcCCCCEEEEEcCC----------------CcEEEEECCCCcEEEEEE
Q psy6984 196 --------------------L-NTVTVSPDGSLCASGGKD----------------MNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 196 --------------------i-~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~ 232 (380)
+ ..++++++...+..+..+ +.|..+|..+++.+..+.
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence 0 135677766666665532 359999999999887765
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.0017 Score=62.92 Aligned_cols=279 Identities=10% Similarity=0.046 Sum_probs=155.2
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc---------cccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP---------QKRLKGHSHFISDIVLSSDGNYALSGSWDKT 87 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 87 (380)
..|.+|...++ + .|..|+..+-|.+++........-.. .....-....|.++...++|. |-.|..++-
T Consensus 258 ~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKD-N-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTT-S-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred ceEEEEEECCC-C-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 56888887655 3 45556664567777765432111000 000112345689999988886 555666677
Q ss_pred EEEEECCCCceeeeec---------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe--eCCCcCcEEEEE
Q psy6984 88 LRLWDLAAGKTTRRFE---------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV--EDGHSDWVSCVR 156 (380)
Q Consensus 88 i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~ 156 (380)
|..++..++....... -....|.++...++|... .|+.++-+..|+..+....... .......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 8899877654332210 123468899888877654 5565555888885432211110 012335688888
Q ss_pred EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe-
Q psy6984 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH- 233 (380)
Q Consensus 157 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~- 233 (380)
..+++. |..|..++-+..+|..+.+...... .....|.++..+++|++.+ |+. +-+..+|..+++.......
T Consensus 414 ~d~~g~---lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 414 KDSEGN---LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp ECTTSC---EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred ECCCCC---EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence 765442 5557776788899987665433221 1245688898888887554 444 5688999877653322211
Q ss_pred -----cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee--c-cccceeEEEEeecCCEEEEeeCCCc
Q psy6984 234 -----NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF--S-LFRDVLSVAFSVDNRQIVSSSRDKT 305 (380)
Q Consensus 234 -----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~s~~~dg~ 305 (380)
...+.++...+++..- .......+..++...++...-.. + ....|.++...++|...++. .+|.
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lW-------igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Gl 560 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFW-------IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGL 560 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEE-------EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred ccccccceeEEEEEcCCCCEE-------EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCc
Confidence 2346666655554321 11122345555554443322110 1 12357788888888866654 3665
Q ss_pred EEEEecc
Q psy6984 306 IKLWNTL 312 (380)
Q Consensus 306 v~iw~~~ 312 (380)
|..|+..
T Consensus 561 v~~~d~~ 567 (781)
T 3v9f_A 561 VCFPSAR 567 (781)
T ss_dssp EEESCTT
T ss_pred eEEECCC
Confidence 4667643
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.0018 Score=62.83 Aligned_cols=320 Identities=10% Similarity=-0.007 Sum_probs=171.7
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccc---ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR---LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 93 (380)
..|.+|...++ +.+.+ |..+ -+.+|+....... ...... ..-....|.++...++|. |..|...+-|.++|.
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFT-NFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEE-C-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEE-EEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 45888877665 34444 4444 5778875432111 000000 011235688998888876 445666456889998
Q ss_pred CCCceeeeec--------------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee--------CCCcCc
Q psy6984 94 AAGKTTRRFE--------------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE--------DGHSDW 151 (380)
Q Consensus 94 ~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~ 151 (380)
.+++...... -....|.++...++|. +..|+.++-|..++........... ......
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 7664332111 1235689999888886 4456656668888765432222211 112346
Q ss_pred EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee---eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH---SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228 (380)
Q Consensus 152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 228 (380)
|.++...+++. |..|+.++-|..||..+....... ......|.++..+++|++.+ |+.++-+..+|..+++..
T Consensus 365 v~~i~~d~~g~---lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 365 VSSVCDDGQGK---LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp EEEEEECTTSC---EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred eEEEEEcCCCC---EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 88888776542 556666677888998764432211 12235688898888887654 666677889988766532
Q ss_pred EEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc-----ccceeEEEEeecCCEEEEe
Q psy6984 229 HTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL-----FRDVLSVAFSVDNRQIVSS 300 (380)
Q Consensus 229 ~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~ 300 (380)
.... ....|.++...+++..- .... ..+..++..+++........ ...|.++...++|+..+..
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lw-------igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIW-------IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEE-------EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred EeccCCCCCCeEEEEEECCCCCEE-------EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 2211 12446666655544321 1111 34666665554432211111 2457888888888876654
Q ss_pred eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373 (380)
Q Consensus 301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~ 373 (380)
..+| +..++...+. . ..... ........|.++...++|++.++ +.+|.|..|+.
T Consensus 513 ~~~G-l~~~~~~~~~-~-----------~~~~~-----~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~ 566 (781)
T 3v9f_A 513 FGGG-VGIYTPDMQL-V-----------RKFNQ-----YEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSA 566 (781)
T ss_dssp SSSC-EEEECTTCCE-E-----------EEECT-----TTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCT
T ss_pred cCCC-EEEEeCCCCe-E-----------EEccC-----CCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECC
Confidence 3345 5556543221 1 11110 00112334677777788886664 33665455553
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.00052 Score=59.55 Aligned_cols=206 Identities=10% Similarity=-0.003 Sum_probs=124.5
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~ 96 (380)
.+..++|++....++++-...+.|..+++...... ............+++.+.+..| ++-...+.|.+.++...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCce-----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 45778888764444444445678888876543211 1111112335678888755555 45555678999998755
Q ss_pred ceeeeecccCCCeEEEEEeCCCCEEE-EEeCC-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984 97 KTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRD-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174 (380)
Q Consensus 97 ~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 174 (380)
.....+.........++++|.+..+. +-... +.|...++.......... ..-.....++++|.... ++++-...+.
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~-lY~aD~~~~~ 226 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRR-MYWVDAKHHV 226 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCCCCE-EEEEECCCCE
Confidence 43333333345678999999666555 44444 678777765543332222 22345788999986543 4455556788
Q ss_pred EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
|..+|+..................+++ ..+.++++-...+.|..++..+++....+
T Consensus 227 I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 227 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 999998754433333333456777888 35566677777788888886666544443
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.37 E-value=0.00037 Score=64.89 Aligned_cols=153 Identities=9% Similarity=0.027 Sum_probs=95.9
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCceeeeecccCCC-----------eEEEEEeCCCCE----EEEEeCCCcEEEEeCCCc
Q psy6984 76 GNYALSGSW-DKTLRLWDL-AAGKTTRRFEDHTKD-----------VLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAH 138 (380)
Q Consensus 76 ~~~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~----~~s~~~d~~v~iwd~~~~ 138 (380)
+..++.++. ++.|.-+|. .+|+.+.++...... ...++.+|.+.. ++.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 889999999 899988776432210 123455444444 788889999999998777
Q ss_pred ceEEEeeCCCc---CcEE-EEEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEeeeCCccc-------------
Q psy6984 139 CKFTIVEDGHS---DWVS-CVRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKINHSGHTGY------------- 195 (380)
Q Consensus 139 ~~~~~~~~~~~---~~v~-~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~------------- 195 (380)
........... ..+. ...+. + ..++.++ .++.|+.+|.++++....+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~---g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K---DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T---TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCccceeecCCEEE-C---CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 66544332210 0111 11111 1 1355444 3789999999998876554322110
Q ss_pred ------------------------e-EEEEEcCCCCEEEEEcCC----------------CcEEEEECCCCcEEEEEE
Q psy6984 196 ------------------------L-NTVTVSPDGSLCASGGKD----------------MNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 196 ------------------------i-~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~ 232 (380)
+ ..+++++...++..+..+ +.|..+|..+++....+.
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 0 134667777777777654 379999999999887765
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=0.00035 Score=57.00 Aligned_cols=126 Identities=6% Similarity=-0.029 Sum_probs=82.6
Q ss_pred eeeeecccCCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984 98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175 (380)
Q Consensus 98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v 175 (380)
.++++ .|... ...+.|+ ++.+..+.+.++.|+.+|+.+++..... ......-..+.+. +. .++...-.++.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~-~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GE-RLYQLTWTEGLL 118 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SS-CEEEEESSSCEE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CC-EEEEEEccCCEE
Confidence 44555 34433 4688887 4666778888899999998776555444 2222222345543 33 355556668899
Q ss_pred EEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
.+||..+.+....++.. ..-+.++ ++++.|+.+..++.|.++|..+.+.+..+.
T Consensus 119 ~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp EEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 99999998887766532 2223343 567777777779999999999888766553
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.33 E-value=0.0011 Score=61.71 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=88.7
Q ss_pred CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceE-EEEEcc---CCC-EEEEEe------CCCcEEEEECCCCc
Q psy6984 29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS-DIVLSS---DGN-YALSGS------WDKTLRLWDLAAGK 97 (380)
Q Consensus 29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~---~~~-~l~s~~------~d~~i~vwd~~~~~ 97 (380)
+..++.++.|+.+..+|....+............ ...+. ...+.. +|+ .+++++ .++.|+.+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-TCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-CcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 3567778888998888876544332211110000 00011 111111 233 566654 37899999999998
Q ss_pred eeeeecccCCC-----------------------------------------eEEEEEeCCCCEEEEEeC----------
Q psy6984 98 TTRRFEDHTKD-----------------------------------------VLSVAFSVDNRQIVSSSR---------- 126 (380)
Q Consensus 98 ~~~~~~~h~~~-----------------------------------------v~~~~~~~~~~~~~s~~~---------- 126 (380)
.+......... -...+++|+...++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 87654321000 012456677777776653
Q ss_pred ----------C----CcEEEEeCCCcceEEEeeCC-CcCc----EEE-EEEc---cCCCC-CEEEEEeCCCeEEEEeCCC
Q psy6984 127 ----------D----KTIKLWNTLAHCKFTIVEDG-HSDW----VSC-VRFS---PNHQN-PIIVSAGWDRMVKVWNLTN 182 (380)
Q Consensus 127 ----------d----~~v~iwd~~~~~~~~~~~~~-~~~~----v~~-~~~~---~~~~~-~~l~s~~~d~~v~iwd~~~ 182 (380)
| +.|..+|..++......... |..+ +.. +.+. .+++. .+++.++.+|.+.++|..+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 57888998777665544332 2211 111 1111 22221 3677889999999999998
Q ss_pred ceeeEeee
Q psy6984 183 CKLKINHS 190 (380)
Q Consensus 183 ~~~~~~~~ 190 (380)
++++....
T Consensus 356 G~~lw~~~ 363 (582)
T 1flg_A 356 GKLQNAFP 363 (582)
T ss_dssp CCEEEEEE
T ss_pred CCEecccc
Confidence 88765543
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00086 Score=54.18 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=112.5
Q ss_pred cceEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceE
Q psy6984 65 HFISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 65 ~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~ 141 (380)
.+...+.|+. +.+..+.+.+| .|+++|+.+++.+....-.. ........+++..+ ...-.++.+.++|..+....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3466788886 55666667654 89999999999988765322 23323233334444 45567889999998776655
Q ss_pred EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--C---ccceEEEEEcCCCCEEEEEcCCCc
Q psy6984 142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--H---TGYLNTVTVSPDGSLCASGGKDMN 216 (380)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~d~~ 216 (380)
..+..+... ..++ +++. .+++|- .++.|.++|..+.+......- + ...++.+.+. +|+.++..-.+..
T Consensus 99 ~ti~~~~~G--wglt--~dg~-~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 99 ARFRYPGEG--WALT--SDDS-HLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEECSSCC--CEEE--ECSS-CEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEeCCCCc--eEEe--eCCC-EEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 555433332 2333 4443 345554 478999999998776544432 1 1345667765 6777777767889
Q ss_pred EEEEECCCCcEEEEEEec--------------CceEEEEeecCc
Q psy6984 217 AMLWDLNDGKHLHTLVHN--------------DIITALCFSPNR 246 (380)
Q Consensus 217 i~i~d~~~~~~~~~~~~~--------------~~i~~~~~~~~~ 246 (380)
|.+.|..+++.+..+... +..+.++++|+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~ 215 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH 215 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence 999999999998887532 234667777654
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00057 Score=60.22 Aligned_cols=207 Identities=10% Similarity=-0.004 Sum_probs=125.0
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~ 95 (380)
..+..++|++....++++-...+.|..+++...... ............+++.+.+..| ++-...+.|.+.++..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-----EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-----EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 346678888764444444445677888876543210 1111112234678888755555 4545567898888875
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RD-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
......+.........++++|.+..|..+. .. +.|...++.......... ..-.+...++++|.... ++++-...+
T Consensus 191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~-lY~aD~~~~ 268 (386)
T 3v65_B 191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRR-MYWVDAKHH 268 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTE-EEEEETTTT
T ss_pred CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCE-EEEEECCCC
Confidence 443333333345678999998776665444 34 677777765544333332 22345788999976543 455556678
Q ss_pred eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
.|..+|+..................+++ ..+.++++-...+.|..++..+++....+
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 269 VIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 8999998754433333333456778888 44566677777888888886666654444
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.29 E-value=0.00022 Score=68.76 Aligned_cols=160 Identities=8% Similarity=0.081 Sum_probs=94.1
Q ss_pred cCCCc-ceEEEEEc-cCCCEEEEEe-CCC----cEEEEECCCC-ceeee-ecccCCCeEEEEEeCCCCEEEEEeCC----
Q psy6984 61 KGHSH-FISDIVLS-SDGNYALSGS-WDK----TLRLWDLAAG-KTTRR-FEDHTKDVLSVAFSVDNRQIVSSSRD---- 127 (380)
Q Consensus 61 ~~h~~-~v~~~~~~-~~~~~l~s~~-~d~----~i~vwd~~~~-~~~~~-~~~h~~~v~~~~~~~~~~~~~s~~~d---- 127 (380)
.+|.. .+....|| |||++|+-+. .+| .|+++|+.++ +.+.. +. .....++|+|||+.|+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 34443 57789999 9999887543 233 4999999988 63221 11 113467899999988776654
Q ss_pred -CcEEEEeCCCcc--eEEEeeCCCcCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCc--ee--eEeeeCCccceEE
Q psy6984 128 -KTIKLWNTLAHC--KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNC--KL--KINHSGHTGYLNT 198 (380)
Q Consensus 128 -~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~--~~--~~~~~~~~~~i~~ 198 (380)
..|..+++.+.. ...............+.++|+++. ++++.. ....|.++|+.+. +. .............
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT-LCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE-EEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE-EEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 246667765432 122222233345677899998764 333332 2456888898764 22 2222333444555
Q ss_pred EEEcCCCCEEEEEcCC----CcEEEEECCC
Q psy6984 199 VTVSPDGSLCASGGKD----MNAMLWDLND 224 (380)
Q Consensus 199 ~~~~~~~~~l~~~~~d----~~i~i~d~~~ 224 (380)
+.|+..+.+++....+ ..|..+|+.+
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5555444444554443 3677777764
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.20 E-value=0.0015 Score=52.83 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=81.2
Q ss_pred eeeeecccCCC--eEEEEEeCCCCEEEEEeCC--CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRD--KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
.++++ .|... ...+.|++ +.+..+.+.. ..|+.+|+.++.............-..+.+.. . .++...-.++
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~-~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--D-RLIQLTWRNH 85 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--T-EEEEEESSSS
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--C-EEEEEEeeCC
Confidence 44555 45443 56889986 5556666665 48999999887666554433222223344432 2 2444556688
Q ss_pred eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
.+.++|..+.+....++... .-+.++ +++..|+.+..++.|.++|..+.+.+..+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence 99999999988777665322 224444 556666666668899999999887765553
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.0024 Score=55.28 Aligned_cols=240 Identities=9% Similarity=-0.022 Sum_probs=134.9
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeC
Q psy6984 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVED 146 (380)
Q Consensus 68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~ 146 (380)
+|....++. +|+.+ ....|+..++...+....+.. ...+..++|++....|. +-...+.|..++............
T Consensus 37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 455545533 33333 334688888876555444333 34578999997666555 555678888888765443333322
Q ss_pred CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEcCC-CcEEEEECCC
Q psy6984 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKD-MNAMLWDLND 224 (380)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d-~~i~i~d~~~ 224 (380)
+ ......+++.+.+.. ++++-...+.|.+.++..................++++|.+. ++++-... +.|..+++..
T Consensus 114 ~-~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 114 G-LESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp S-CSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred C-CCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 2 223467888875433 556666678999999876543333333445678999999555 45555455 7888888764
Q ss_pred CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 225 GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 225 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
........ .-.....++++|+....-. .......+..++...................+++ ..+..+++-...
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~-----aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYW-----VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEE-----EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEE-----EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 33222211 1234678888875432111 1122345566665543222212122234456777 345555555567
Q ss_pred CcEEEEecccceeee
Q psy6984 304 KTIKLWNTLAHCKFT 318 (380)
Q Consensus 304 g~v~iw~~~~~~~~~ 318 (380)
+.|...+..++....
T Consensus 266 ~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 266 KSINSANKFTGKNQE 280 (349)
T ss_dssp TEEEEEETTTCCSCE
T ss_pred CeEEEEEccCCCccE
Confidence 778777754544433
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.18 E-value=0.0023 Score=54.61 Aligned_cols=207 Identities=9% Similarity=0.011 Sum_probs=125.5
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~ 96 (380)
.+..++|++..+.++.+-...+.|..+++....... ..+.........+++.+.+..| ++-...+.|.++++...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~----~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC----EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE----EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 455778887634444444456788888765431110 0111112245678888754444 55556688999998754
Q ss_pred ceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174 (380)
Q Consensus 97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 174 (380)
...............++++|.+..++.+.. .+.|...++.......... ..-...+.+++++.... ++++-...+.
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~-lY~aD~~~~~ 189 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK-LYWADAKLNF 189 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCE-EEEEECCCCE
Confidence 333333334456789999987666665542 4677777765443333332 22345688999986543 4455566788
Q ss_pred EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
|..+|+..........+.......+++.. +.++.+-...+.|..++..+++....+
T Consensus 190 I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 190 IHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 99999875443333333445677788764 456666777889999998777654444
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.18 E-value=0.0029 Score=55.69 Aligned_cols=241 Identities=10% Similarity=-0.027 Sum_probs=135.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeC
Q psy6984 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVED 146 (380)
Q Consensus 68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~ 146 (380)
.|.+..+++ +|+.+ ....|+..++...+....+.. ...+..++|++.+..| ++-...+.|..++............
T Consensus 80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 344444433 44433 345788888877655444433 3457899999765555 4555678888888765543333322
Q ss_pred CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCC-CcEEEEECCC
Q psy6984 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKD-MNAMLWDLND 224 (380)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d-~~i~i~d~~~ 224 (380)
+ ......+++.+.... ++++-...+.|.+.++..................++++|.+..| ++-... +.|..+++..
T Consensus 157 ~-~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 157 G-LESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp S-CSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred C-CCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 2 223456788765433 55566667789888887544333333344568899999866544 444444 7888888764
Q ss_pred CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 225 GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 225 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
........ .-.....++++|+....-. .......+..++.........+.........+++ ..+..+.+-...
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~-----aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 308 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYW-----VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 308 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEE-----EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEE-----EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCC
Confidence 43222221 1234678888875432111 1122344555555433222222222234556777 445555565567
Q ss_pred CcEEEEecccceeeeE
Q psy6984 304 KTIKLWNTLAHCKFTI 319 (380)
Q Consensus 304 g~v~iw~~~~~~~~~~ 319 (380)
+.|..++..++.....
T Consensus 309 ~~V~~~~~~~G~~~~~ 324 (386)
T 3v65_B 309 KSINSANKFTGKNQEI 324 (386)
T ss_dssp TEEEEEETTTCCSCEE
T ss_pred CeEEEEECCCCcceEE
Confidence 7888887555544333
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.16 E-value=0.0026 Score=54.27 Aligned_cols=211 Identities=9% Similarity=-0.024 Sum_probs=125.6
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~ 95 (380)
..+..+++++..+.++++-...+.|..+++....... .....+.........+++.+.+..| ++-...+.|.+.++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 4466788887644455555556888888875410000 0011111122345788898755555 4546678999999875
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD--KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
......+.........++++|.+..++.+... +.|...++.......... ..-.....+++++.... ++++-...+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~d~~~~~-lY~~D~~~~ 186 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH 186 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE-CCCCCceEEEEeccCCE-EEEEECCCC
Confidence 44333333333567899999976666554443 677777765443333322 23356788999986543 445555678
Q ss_pred eEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
.|..+|+.......... ........+++. .+.++++-...+.|..++..+++.+..+
T Consensus 187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 99999987543322222 123456778885 4666777777889999998777655444
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0036 Score=55.94 Aligned_cols=154 Identities=9% Similarity=0.062 Sum_probs=95.9
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CC----cEEEEeCCCcc
Q psy6984 66 FISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DK----TIKLWNTLAHC 139 (380)
Q Consensus 66 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~----~v~iwd~~~~~ 139 (380)
....++++| ++..|+.+...+.|+.+|+.+++..... ........++|+++++.++.+.. ++ .+...+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 346889998 4566766666588999999876554433 34456789999999996655543 22 23333322211
Q ss_pred e-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCC-EEEEEcCCCc
Q psy6984 140 K-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGS-LCASGGKDMN 216 (380)
Q Consensus 140 ~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~ 216 (380)
. ...+.. ......++++|... .++++-..++.|..++........ ...+.......++++|+|+ ++++-...+.
T Consensus 217 ~~~~~l~~--~~~p~giavdp~~g-~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTK--GQNCNGAETHPING-ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEE--CSSCCCEEECTTTC-CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeecc--CCCceEEEEeCCCC-EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 1 011111 12245678888432 355665667899999998665422 2222234578899999999 5556667789
Q ss_pred EEEEECC
Q psy6984 217 AMLWDLN 223 (380)
Q Consensus 217 i~i~d~~ 223 (380)
|..++..
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9998765
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.00045 Score=65.56 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=68.8
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------cEEEEeCCCcce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeE
Q psy6984 111 SVAFSV-DNRQIVSSSRDK-----------TIKLWNTLAHCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMV 175 (380)
Q Consensus 111 ~~~~~~-~~~~~~s~~~d~-----------~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v 175 (380)
..++.+ +++.++.|+.+. .+.+||..+..- .......+.....++++..++ .+++.|+ .+..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCce
Confidence 566777 888888887543 578888755431 122222233333345666654 3677776 45689
Q ss_pred EEEeCCCceeeEeeeCCc-cceEEEEEcCCCCEEEEEc-CC-----CcEEEEECCCCc
Q psy6984 176 KVWNLTNCKLKINHSGHT-GYLNTVTVSPDGSLCASGG-KD-----MNAMLWDLNDGK 226 (380)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~ 226 (380)
.+||..+.+-......+. ..-.++...++|++++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999987654332211111 1123455667999999998 34 568999998765
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.07 E-value=0.0015 Score=62.95 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=105.6
Q ss_pred ceEEEEeC-CCCCCeEE-EeeCCC----eEEEeecCCC-CCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-----
Q psy6984 18 WVTQIATN-PKFPDTIL-SCSRDN----TLIIWKLTRD-DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD----- 85 (380)
Q Consensus 18 ~v~~i~~~-~~~~~~l~-t~~~dg----~v~vw~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----- 85 (380)
.+....++ |+ +++|| +.+.+| +|+++|+... .. ++ ..+. .....+.|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQT---IA-DKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCC---CC-CCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEe---CC-cccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 67788999 88 56555 333333 5899988654 21 11 1111 123468899999988877665
Q ss_pred CcEEEEECCCCcee--eeec-ccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCcc-eE--EEeeCCCcCcEEEEE
Q psy6984 86 KTLRLWDLAAGKTT--RRFE-DHTKDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAHC-KF--TIVEDGHSDWVSCVR 156 (380)
Q Consensus 86 ~~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~~~-~~--~~~~~~~~~~v~~~~ 156 (380)
..|+++++.+++.. ..+. ....-...+.|+|||++|+..+. ...+.++|+.+.. .. ..+..........+.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 36888998776432 2222 22234567899999998876552 3356677765531 22 233233334444555
Q ss_pred EccCCCCCEEEEEeCC----CeEEEEeCCCc-eeeEeeeCCcc--ceEEEEEcCCCCEEEEEcCCCcE--EEEEC
Q psy6984 157 FSPNHQNPIIVSAGWD----RMVKVWNLTNC-KLKINHSGHTG--YLNTVTVSPDGSLCASGGKDMNA--MLWDL 222 (380)
Q Consensus 157 ~~~~~~~~~l~s~~~d----~~v~iwd~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i--~i~d~ 222 (380)
|+. +.. +++....+ ..|..+|+.+. ........+.. .+..+.+. .+.++++...++.. .++|+
T Consensus 327 ~~~-g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 433 232 33443332 36777777642 21110112222 34455554 23455666667754 45565
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.05 E-value=0.0061 Score=54.48 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=90.6
Q ss_pred ceEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---Cc-EEEEeCCCcc
Q psy6984 66 FISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KT-IKLWNTLAHC 139 (380)
Q Consensus 66 ~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~-v~iwd~~~~~ 139 (380)
....++++|+ ...|..+...+.|+.+|..+++..... ........++++++|.++++.... .. +...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3568999984 445665555489999999877665443 334568899999999944444321 12 2223221111
Q ss_pred e-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEee-eCCccceEEEEEcCCCC-EEEEEcCCC
Q psy6984 140 K-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINH-SGHTGYLNTVTVSPDGS-LCASGGKDM 215 (380)
Q Consensus 140 ~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~ 215 (380)
. ..... .......++++|... .++++-..++.|+.+|..++.. .... .+.......++++|+|+ ++++-...+
T Consensus 219 ~~~~~~~--~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 219 TERLSLC--NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp CCEEEEE--ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred ecccccc--ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 1 01111 112234577887332 2555555678899999876554 1111 12222345699999998 455556678
Q ss_pred cEEEEECC
Q psy6984 216 NAMLWDLN 223 (380)
Q Consensus 216 ~i~i~d~~ 223 (380)
.|+.+++.
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 88888765
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0067 Score=53.59 Aligned_cols=213 Identities=8% Similarity=-0.023 Sum_probs=128.2
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECC
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLA 94 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~ 94 (380)
...+..|++++....++++-...+.|+.+++..... .................+++.+.+. +.++-...+.|.+.++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 356778888876444444444567888887653210 0001111222233567889987444 44455567889999987
Q ss_pred CCceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
.......+.........++++|.+..|+.+.. .+.|...++.......... ..-.+...|++++.... ++++-...
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~-lY~aD~~~ 267 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKL 267 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE-EEEEETTT
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCE-EEEEECCC
Confidence 65544444334456789999997666655442 3678888776544433332 23356788999986543 44454556
Q ss_pred CeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 173 RMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 173 ~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
..|..+|+........... .......+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 8899999876443333222 23456677774 44566677778899999977776655554
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.0059 Score=54.54 Aligned_cols=196 Identities=8% Similarity=0.005 Sum_probs=108.9
Q ss_pred ceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC-----cEEEE
Q psy6984 18 WVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK-----TLRLW 91 (380)
Q Consensus 18 ~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~vw 91 (380)
....|++.|+ ....|+.+...+.|+.++...... ..+.........++++++|+ |+.+...+ .+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v------~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV------DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE------EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE------EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 4567788873 123444444437788887643211 11222334578999999999 54444321 23333
Q ss_pred ECCCCcee-eeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 92 DLAAGKTT-RRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 92 d~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
+...+... ..+. .......++++| ++.+.++-..++.|+.+|...+.. ......+....-..++++|++.. ++++
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEE
Confidence 32221110 1111 223456688899 677666666778899998764433 22222222333456999997642 4555
Q ss_pred EeCCCeEEEEeCCC--ceee--EeeeC---------------CccceEEEEE---------cCCCCEEEEEcCCCcEEEE
Q psy6984 169 AGWDRMVKVWNLTN--CKLK--INHSG---------------HTGYLNTVTV---------SPDGSLCASGGKDMNAMLW 220 (380)
Q Consensus 169 ~~~d~~v~iwd~~~--~~~~--~~~~~---------------~~~~i~~~~~---------~~~~~~l~~~~~d~~i~i~ 220 (380)
-...+.|+.+++.. ..+. ..+.+ .-.....+++ +++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56678899988652 2110 11111 1123667888 6777777777777788877
Q ss_pred EC
Q psy6984 221 DL 222 (380)
Q Consensus 221 d~ 222 (380)
+.
T Consensus 371 ~~ 372 (433)
T 4hw6_A 371 TP 372 (433)
T ss_dssp CT
T ss_pred CC
Confidence 74
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0095 Score=53.17 Aligned_cols=154 Identities=5% Similarity=0.050 Sum_probs=89.9
Q ss_pred ceEEEEeCC-CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-C----cEEEE
Q psy6984 18 WVTQIATNP-KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-K----TLRLW 91 (380)
Q Consensus 18 ~v~~i~~~~-~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~----~i~vw 91 (380)
....|+++| +. ..|..+...+.|+.+++..... ..+.........+++++++++|+.+... + .+.+.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYV------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEE------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEE------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 345677776 32 3444444446777777643211 1111233457889999999966666542 2 24344
Q ss_pred ECCCCcee--eeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984 92 DLAAGKTT--RRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 92 d~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 168 (380)
+. .+... ..+.. ......++++| ++..+++-..++.|..++............+...+...++++|+++. ++++
T Consensus 211 ~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~-lyv~ 287 (430)
T 3tc9_A 211 TR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY-AYIV 287 (430)
T ss_dssp EG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE-EEEE
T ss_pred eC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE-EEEE
Confidence 43 22222 22221 23456788999 77777777778889999876544322222222345678999998642 4555
Q ss_pred EeCCCeEEEEeCC
Q psy6984 169 AGWDRMVKVWNLT 181 (380)
Q Consensus 169 ~~~d~~v~iwd~~ 181 (380)
-...+.|..++..
T Consensus 288 d~~~~~I~~~~~d 300 (430)
T 3tc9_A 288 VVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 5667889988765
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.89 E-value=0.0057 Score=56.89 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=102.2
Q ss_pred EEEEccCCCEEEEEeC--------------------C----CcEEEEECCCCceeeeecc--cC--------CCeEEEEE
Q psy6984 69 DIVLSSDGNYALSGSW--------------------D----KTLRLWDLAAGKTTRRFED--HT--------KDVLSVAF 114 (380)
Q Consensus 69 ~~~~~~~~~~l~s~~~--------------------d----~~i~vwd~~~~~~~~~~~~--h~--------~~v~~~~~ 114 (380)
..++.|+..+++.+.. | +.|..+|..+++.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3566777777776663 2 5899999999999887643 31 1221 222
Q ss_pred e-CCCC---EEEEEeCCCcEEEEeCCCcceEEEeeCCC-cCcEE------------------------------------
Q psy6984 115 S-VDNR---QIVSSSRDKTIKLWNTLAHCKFTIVEDGH-SDWVS------------------------------------ 153 (380)
Q Consensus 115 ~-~~~~---~~~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~------------------------------------ 153 (380)
. .+|+ .++.++.+|.+.++|..+++.+....... ..+..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4674 67889999999999987765544332221 00111
Q ss_pred -------EEEEccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeeEeeeCCc
Q psy6984 154 -------CVRFSPNHQNPIIVSAG---------------------------------WDRMVKVWNLTNCKLKINHSGHT 193 (380)
Q Consensus 154 -------~~~~~~~~~~~~l~s~~---------------------------------~d~~v~iwd~~~~~~~~~~~~~~ 193 (380)
.++++|... +++... .++.|..||+.+++.........
T Consensus 409 ~Gg~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~ 486 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTG--LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL 486 (582)
T ss_dssp TCSSCSSCCEECTTTC--CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS
T ss_pred ccccCCCCceECCCCC--EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC
Confidence 123344322 222211 25789999999988766554321
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc
Q psy6984 194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI 236 (380)
Q Consensus 194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 236 (380)
....-.+...+.+++.++.|+.++.||.++++.+..+.....
T Consensus 487 -~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 487 -PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp -CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred -CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 121111223466788899999999999999999988876544
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.89 E-value=0.009 Score=50.92 Aligned_cols=186 Identities=9% Similarity=-0.012 Sum_probs=110.7
Q ss_pred eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceee-eecccCCC
Q psy6984 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTR-RFEDHTKD 108 (380)
Q Consensus 31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~-~~~~h~~~ 108 (380)
+|++- ...|+..+++.....+.++. . .......+.|.+..+.|+ +-...+.|..+++..+.... .+......
T Consensus 7 ll~~~--~~~I~~i~l~~~~~~~~~~~---~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 7 LLYAN--RRDLRLVDATNGKENATIVV---G-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp EEEEC--EEEEEEEETTCTTSCCEEEE---E-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred EEEEc--cCeEEEEECCCCceEEEEEe---c-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence 44443 35888888765432222221 1 122456888988655555 44556789999987663222 22222245
Q ss_pred eEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceee
Q psy6984 109 VLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLK 186 (380)
Q Consensus 109 v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~ 186 (380)
...+++.+.+. ..++-...+.|.++++.......... ........+++.|.... ++.+- +..+.|...++......
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeE
Confidence 66789987554 44555667789999876544333332 33345688999885432 33333 23578888888653333
Q ss_pred EeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCC
Q psy6984 187 INHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLND 224 (380)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 224 (380)
..........+.++++|++. ++++=+..+.|..+|+..
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 22223345678999998655 445556678899999864
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.022 Score=54.85 Aligned_cols=211 Identities=9% Similarity=-0.022 Sum_probs=125.5
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~ 95 (380)
..+..|++.+....++++-...+.|+.+++...... ......+.........+++.+.++.|+ +-...+.|.+.++..
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456678887754445555555678888876542110 001111222233467899988775555 445668999999875
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-D-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
......+.........|+++|....|+.+.. . +.|...++.......++. ..-.+...|++.+.... ++++-....
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~-LYwaD~~~~ 580 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH 580 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCe-EEEEeCCCC
Confidence 5443333334456889999997666655443 2 678887776554444433 33356788999976543 444445567
Q ss_pred eEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
.|...++........... .......|++.. +.++++-...+.|...|..+++.+..+
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 899999876544333332 223456677643 356666667788888887777655544
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.87 E-value=0.0073 Score=49.38 Aligned_cols=186 Identities=12% Similarity=0.115 Sum_probs=114.4
Q ss_pred cccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeeccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984 59 RLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDH-TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136 (380)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~ 136 (380)
.+.+-...+..++++|+++.|+ +...++.|...|.. ++.++.+.-. ....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556799999999876554 57788899999998 7777776321 2457788888888776776677788888765
Q ss_pred Ccce---EEEee-----CCCcCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeC--CCceeeEe-e-----eCCccceEEE
Q psy6984 137 AHCK---FTIVE-----DGHSDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNL--TNCKLKIN-H-----SGHTGYLNTV 199 (380)
Q Consensus 137 ~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~--~~~~~~~~-~-----~~~~~~i~~~ 199 (380)
.... ..... .........+++.|.++. ++++...+. .|..|+- ........ . ..+...+.++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 4332 11111 122334689999997643 344443333 4444441 11111111 0 1123457889
Q ss_pred EEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEec----------CceEEEEeecCcc
Q psy6984 200 TVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHN----------DIITALCFSPNRS 247 (380)
Q Consensus 200 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~~~~~~ 247 (380)
+++|. +++++....+..+..+|.. ++.+..+... .....++|.+++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 99995 4566667777888889865 5565555432 1456667766653
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.013 Score=50.24 Aligned_cols=271 Identities=8% Similarity=0.046 Sum_probs=135.2
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 95 (380)
...+.+|.+.+. ...++ ++.+|.|... .+.. ................+..+.+.+ +. +..++.++.|+. ....
T Consensus 35 ~~~~~~v~~~~~-~~~~~-~G~~g~i~~s-~DgG-~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWL-VGVNATLMET-RDGG-QTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSS-SCEEE-EETTTEEEEE-SSTT-SSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred CCcEEEEEECCC-CcEEE-EcCCCeEEEe-CCCC-CCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence 457889988754 34555 5667765332 2211 111111111112234578888876 44 444555665543 3334
Q ss_pred Cceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcE-EEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984 96 GKTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTI-KLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171 (380)
Q Consensus 96 ~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 171 (380)
++.-.... .+...+..+.+.+++..++.+ .++.+ +-.| .+.............+..+.+.+++ .+++.+..
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~--~~~~~g~~ 182 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSG--EYVAVSSR 182 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTS--CEEEEETT
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCC--cEEEEECC
Confidence 54433332 233557788887777666655 45544 3222 2223333333445568888888754 35555544
Q ss_pred CCeEEEEeC--CCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-----CceEEEEeec
Q psy6984 172 DRMVKVWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-----DIITALCFSP 244 (380)
Q Consensus 172 d~~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~~~ 244 (380)
.+..+-+|- .+.+.. .......+..+.++++++.++.+ .+|.+++.+...++.-..+... ..+..+.+.+
T Consensus 183 G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp SSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred CcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 444444553 222222 12344567888899998776544 5677776643323322222211 2356666665
Q ss_pred CcccceeeeeeeeeccccceEEEEcCCceeeeeee---ccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF---SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310 (380)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 310 (380)
+....... ..+.+ ....+.++-=.... .....+.++.|.+++. ++.++.+|.|.-++
T Consensus 260 ~~~~~~~g-------~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNEVWLAG-------GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SSCEEEEE-------STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCEEEEEe-------CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 43322211 11222 23333332111111 1234677888886655 55556788776553
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0055 Score=51.77 Aligned_cols=159 Identities=8% Similarity=0.012 Sum_probs=102.1
Q ss_pred CCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeeeccc-----CC--CeEEEEE---eCCCCEEEEEe------
Q psy6984 63 HSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDH-----TK--DVLSVAF---SVDNRQIVSSS------ 125 (380)
Q Consensus 63 h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h-----~~--~v~~~~~---~~~~~~~~s~~------ 125 (380)
...+-.++.|.+....|..++ ..+.|..||...+......... .. .+..+.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 334456899988666666666 7899999998765443332211 11 3578999 68877776543
Q ss_pred -------CCCcEEEEeCC---CcceEEEeeCC------------CcCcEEEEEEccCCCCCEEEEEeCC-CeEEEEeCCC
Q psy6984 126 -------RDKTIKLWNTL---AHCKFTIVEDG------------HSDWVSCVRFSPNHQNPIIVSAGWD-RMVKVWNLTN 182 (380)
Q Consensus 126 -------~d~~v~iwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l~s~~~d-~~v~iwd~~~ 182 (380)
.++.+..+|+. +.......... .......+++.++++ ..++++.. +.|...+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSCEEEEECTTS
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC--EEEeCCCCCCeEEEEeCCC
Confidence 26789999987 44443332210 112366788887654 67777777 7777777654
Q ss_pred ceeeEeee-----CCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984 183 CKLKINHS-----GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN 223 (380)
Q Consensus 183 ~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 223 (380)
........ ......+.++++|+|+.|++....+.|..+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 33221111 112246789999999988887779999999986
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.73 E-value=0.036 Score=53.34 Aligned_cols=181 Identities=13% Similarity=0.058 Sum_probs=109.5
Q ss_pred CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCC----ceeeeecccCCCeEEE
Q psy6984 38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSV 112 (380)
Q Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~ 112 (380)
...|+..++.... +. .+......+..++|.+....|+ +-...+.|+.+++... .....+.........|
T Consensus 403 ~~~Ir~i~l~~~~--~~----~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSE--YT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCC--CE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccceeEeeccCCc--ce----eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 3466766665332 11 1122234567899988655555 4445678998988753 2223333234556789
Q ss_pred EEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeee
Q psy6984 113 AFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHS 190 (380)
Q Consensus 113 ~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~ 190 (380)
++.+.+..|+ +-...+.|.+.++.......++. ........|++.|.... ++++- +....|...++..........
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEe
Confidence 9998775554 55667889999877655444443 23345788999986443 33333 223788888887655444444
Q ss_pred CCccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc
Q psy6984 191 GHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGK 226 (380)
Q Consensus 191 ~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~ 226 (380)
......+.|++++.+.. +++=.....|..+++....
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 44467899999976554 4454566789999986543
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.67 E-value=0.02 Score=48.69 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=126.6
Q ss_pred CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCC----cceEEEeeCCCcCcEEEEEEccC
Q psy6984 86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLA----HCKFTIVEDGHSDWVSCVRFSPN 160 (380)
Q Consensus 86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~ 160 (380)
..|+..|+.+.+....+. ....+..++|++++..+. +-...+.|..++... ........ ........+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-CCCCCcCEEEEeec
Confidence 468999998776555443 345678999998765554 555668898888754 22222222 22233567888765
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCC-CcEEEEECCCCcEEEEEE--ecCc
Q psy6984 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKD-MNAMLWDLNDGKHLHTLV--HNDI 236 (380)
Q Consensus 161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d-~~i~i~d~~~~~~~~~~~--~~~~ 236 (380)
+.+ ++++-..++.|.+.++..................++++|.+..+ ++.... +.|...++... ....+. .-..
T Consensus 88 ~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~ 165 (316)
T 1ijq_A 88 HSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW 165 (316)
T ss_dssp TTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSC
T ss_pred CCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCC
Confidence 433 55565667899999987654333333334567899999966544 444333 68888887533 233332 1234
Q ss_pred eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec--cccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS--LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 314 (380)
Q Consensus 237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 314 (380)
...++++++....-. .......+..++............ .......+++. .+..+++-...+.|..++..++
T Consensus 166 P~gla~d~~~~~lY~-----~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 166 PNGITLDLLSGRLYW-----VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEEEEETTTTEEEE-----EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred ceEEEEeccCCEEEE-----EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 678888876432111 112234566666653322211111 12334567774 4555555556778888886555
Q ss_pred eeee
Q psy6984 315 CKFT 318 (380)
Q Consensus 315 ~~~~ 318 (380)
....
T Consensus 240 ~~~~ 243 (316)
T 1ijq_A 240 SDVN 243 (316)
T ss_dssp CCCE
T ss_pred cceE
Confidence 4443
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.66 E-value=0.027 Score=49.73 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=112.5
Q ss_pred eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCC----ceeeeeccc
Q psy6984 31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAG----KTTRRFEDH 105 (380)
Q Consensus 31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~----~~~~~~~~h 105 (380)
+|+.+. ...|+.-++..... . .+......+..++|++..+.|+-.. ..+.|+.+++... .....+...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~----~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--T----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--E----EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEec-cceeEEEccCCcce--e----EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 333333 46777777654321 1 1122334578999998766666554 5678999998652 222333333
Q ss_pred CCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCc
Q psy6984 106 TKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNC 183 (380)
Q Consensus 106 ~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~ 183 (380)
......+++.+.+. +.++-...+.|.+.++........... .......+++.|.... ++.+- +..+.|...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCCC
Confidence 45678899998544 445556678898888766544444432 2344688999986432 33333 22468888888764
Q ss_pred eeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCC
Q psy6984 184 KLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDG 225 (380)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~ 225 (380)
.............+.+++++++..| ++=...+.|..+|+...
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 4433333344578999999866655 44456688999998643
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00052 Score=65.37 Aligned_cols=209 Identities=10% Similarity=-0.003 Sum_probs=115.1
Q ss_pred ceEEEEeCCCCCCeEEEe-eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q psy6984 18 WVTQIATNPKFPDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~ 95 (380)
.+..|++.+.. ..|+.+ ...+.|+.+++........ ....+.........+++.+.+ +++++-...+.|.++++..
T Consensus 407 ~p~gla~d~~~-~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTT-TEEEECCTTTTSBEEEESCCCCC-CC-CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEcccccc-CeEEEEecCCCeEEEEecCCCCCCcc-eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 34566777653 344443 4456777777653100000 001111111234567887544 4444445568899999876
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-D-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
......+.........++++|.+..|+.+.. . +.|...++.......+.. ..-.+...|+++|.+.. ++++-...+
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~-LY~aD~~~~ 562 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH 562 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCC-EEEEETTTT
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCE-EEEEecCCC
Confidence 5433333322344677899986655544332 2 677776654433222221 12234567999987543 555666678
Q ss_pred eEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984 174 MVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 231 (380)
.|..+++.......... ........+++..+ .++++....+.|..+|..+++.+..+
T Consensus 563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 99999986543322222 12233455666654 45566667789999998777766554
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.54 E-value=0.033 Score=47.56 Aligned_cols=145 Identities=11% Similarity=0.118 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeC----CCC---EEEEEeC---CCcEEEEeCCC-cceEEE
Q psy6984 75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV----DNR---QIVSSSR---DKTIKLWNTLA-HCKFTI 143 (380)
Q Consensus 75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~---~~~s~~~---d~~v~iwd~~~-~~~~~~ 143 (380)
...+++.....+-+.+||+ +|+.++.+.. +.+..+..-| .|+ ++++..+ +++|.+|++.. ...+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4466777778889999999 7888888753 4455555544 232 2333333 57999996531 112332
Q ss_pred eeC---C--Cc-CcEEEEEE--ccCCCCCEEEEEeCCCeEEEEeCCC-------ceeeEeeeCCccceEEEEEcCCCCEE
Q psy6984 144 VED---G--HS-DWVSCVRF--SPNHQNPIIVSAGWDRMVKVWNLTN-------CKLKINHSGHTGYLNTVTVSPDGSLC 208 (380)
Q Consensus 144 ~~~---~--~~-~~v~~~~~--~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l 208 (380)
+.. . .. ..+..+++ +|.....+++....++.+..|++.. .+++..+.. .+.+..+..++....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 211 0 11 34555666 5544334677788889999998832 233444432 3467888899988898
Q ss_pred EEEcCCCcEEEEECC
Q psy6984 209 ASGGKDMNAMLWDLN 223 (380)
Q Consensus 209 ~~~~~d~~i~i~d~~ 223 (380)
..+-.+.-|..++.+
T Consensus 195 yv~eEd~GIw~~da~ 209 (355)
T 3amr_A 195 YIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEETTTEEEEEECS
T ss_pred EEecccceEEEEeCC
Confidence 899888776666643
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.49 E-value=0.036 Score=46.88 Aligned_cols=169 Identities=11% Similarity=0.068 Sum_probs=103.7
Q ss_pred ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc--CCC-cceEEEEE---ccCCCEEEEEeC-
Q psy6984 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--GHS-HFISDIVL---SSDGNYALSGSW- 84 (380)
Q Consensus 12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~--~h~-~~v~~~~~---~~~~~~l~s~~~- 84 (380)
+...+-.--++.|++..+.++++.-..++|..|+....... .+....+. +-. ..+..+.+ .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 34445555678898764444454447899999987532111 11111111 111 13578999 688777775442
Q ss_pred ------------CCcEEEEECC---CCceeeeec--cc-----------CCCeEEEEEeCCCCEEEEEeCC-CcEEEEeC
Q psy6984 85 ------------DKTLRLWDLA---AGKTTRRFE--DH-----------TKDVLSVAFSVDNRQIVSSSRD-KTIKLWNT 135 (380)
Q Consensus 85 ------------d~~i~vwd~~---~~~~~~~~~--~h-----------~~~v~~~~~~~~~~~~~s~~~d-~~v~iwd~ 135 (380)
+..|..||+. +++.+.... .. .....+++..++|+..++++.. +.|...+.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 6789999998 776655432 11 1247899999999999988888 87777765
Q ss_pred CCcceEEEeeCC----CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984 136 LAHCKFTIVEDG----HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183 (380)
Q Consensus 136 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 183 (380)
............ .....+.|+++|++. .|+.....+.+..+|++..
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~--~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSN--KLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTT--EEEEESSSSSEEEEECSSS
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCC--EEEEEcCCCeEEEEcCCCC
Confidence 443222121111 111255899999764 4555544999999998853
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.06 Score=48.54 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=92.3
Q ss_pred eEEEEEcc-CCCEEE-EEeCCCcEEEEECCCCceeeeeccc---CCCeEEEEE-------eCCCCEEEEEeCCC------
Q psy6984 67 ISDIVLSS-DGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDH---TKDVLSVAF-------SVDNRQIVSSSRDK------ 128 (380)
Q Consensus 67 v~~~~~~~-~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~~~s~~~d~------ 128 (380)
...++|+| +...|+ +....+.|++.|+.+++.......- ......++| ++++..|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46789998 344444 4444578999999887665544321 235789999 99999776665543
Q ss_pred -cEEEEeCCC--cce----EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC-------Ccee---------
Q psy6984 129 -TIKLWNTLA--HCK----FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT-------NCKL--------- 185 (380)
Q Consensus 129 -~v~iwd~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~-------~~~~--------- 185 (380)
.+.+.+... .-. ...+.. -.....++++|... .++++-..++.|..+|+. +...
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 255554322 100 011111 11234678888543 366667778889999987 3332
Q ss_pred ----eEeeeCCccceEEEEEcCCCCE-EEEEcCCCcEEEEEC
Q psy6984 186 ----KINHSGHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDL 222 (380)
Q Consensus 186 ----~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~ 222 (380)
.....+.......++++|+|++ +++=....+|+.++.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1111122345678999999995 445556678888654
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.42 E-value=0.002 Score=61.41 Aligned_cols=157 Identities=11% Similarity=0.014 Sum_probs=92.0
Q ss_pred ceEEEEEccCCCEEEEEe-CCCcEEEEECCC----CceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcc
Q psy6984 66 FISDIVLSSDGNYALSGS-WDKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHC 139 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~ 139 (380)
.+..++|.+.+..|+... ..+.|+.+++.. ......+.........+++.+.+ .++++-...+.|.+.++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 356788998776666554 457899999875 22222221112234567887544 444555567789999876544
Q ss_pred eEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcE
Q psy6984 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNA 217 (380)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i 217 (380)
...++.. .......+++.|.+.. ++++- +..+.|..+++................+.|+++|++ +++++-+..+.|
T Consensus 487 ~~~l~~~-~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 487 RKTLFRE-QGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp EEEECCC-SSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred eEEEEeC-CCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence 3333322 2233467888886544 33332 223678877775433222222223457789999864 555666677889
Q ss_pred EEEECCC
Q psy6984 218 MLWDLND 224 (380)
Q Consensus 218 ~i~d~~~ 224 (380)
..+++..
T Consensus 565 ~~~d~dG 571 (699)
T 1n7d_A 565 SSIDVNG 571 (699)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 9999864
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.36 E-value=0.099 Score=49.04 Aligned_cols=223 Identities=10% Similarity=0.010 Sum_probs=126.7
Q ss_pred CCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984 84 WDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH 161 (380)
Q Consensus 84 ~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (380)
....|+..++.+.+....+. ..-..+..++|++.+..+. +-..++.|..+++...........+ ......+++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CCCcceEEEEeCC
Confidence 45679999998655433322 1234678999998666655 5556788888887654333333322 2335678887754
Q ss_pred CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC-CCEEEEE-cCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984 162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD-GSLCASG-GKDMNAMLWDLNDGKHLHTLVHNDIITA 239 (380)
Q Consensus 162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 239 (380)
.+ ++++-...+.|.+.++..................++++|. |.++++- +..+.|...++...........-.....
T Consensus 92 ~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~G 170 (628)
T 4a0p_A 92 KN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANG 170 (628)
T ss_dssp TE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred CE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcce
Confidence 43 5556666788999998764433333234456789999985 4444443 2356788887765443322233345677
Q ss_pred EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 315 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 315 (380)
++++++....- ........+..+++..... ..+.........+++.. +..+.+-...+.|...|..++.
T Consensus 171 lalD~~~~~LY-----~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 171 LTIDYAKRRLY-----WTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTTEEE-----EEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEccccCEEE-----EEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 88877543211 1112234455555544322 12222233445666653 3444444456788877765543
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.21 E-value=0.09 Score=45.41 Aligned_cols=140 Identities=13% Similarity=0.200 Sum_probs=75.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--eec---ccCCCeEEEEEeCC---CCEEEEEeC-C-----CcEE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR--RFE---DHTKDVLSVAFSVD---NRQIVSSSR-D-----KTIK 131 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~---~h~~~v~~~~~~~~---~~~~~s~~~-d-----~~v~ 131 (380)
....++|.|+|++++ +..++.|++++ +++... .+. ........++|+|+ +..+..+.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 457899999998554 46679999998 443221 111 12345789999998 444444332 2 5676
Q ss_pred EEeCCCcc---eEEE---ee--CCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCC--------
Q psy6984 132 LWNTLAHC---KFTI---VE--DGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTN-------- 182 (380)
Q Consensus 132 iwd~~~~~---~~~~---~~--~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~-------- 182 (380)
.++..... .... +. .........++|.|++. ++++.+. .+.|.-++...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 77654321 1111 11 11111235789999762 4444332 14565555543
Q ss_pred -----ceeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984 183 -----CKLKINHSGHTGYLNTVTVSP-DGSLCASG 211 (380)
Q Consensus 183 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 211 (380)
........++ .....++|+| +|+++++-
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 0111222233 2367789999 66665553
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.18 E-value=0.16 Score=47.62 Aligned_cols=207 Identities=10% Similarity=0.014 Sum_probs=118.2
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE-EeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS-GSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~ 95 (380)
+.+..|++++..+.++.+=...+.|..+++..... ....+..-......+++.+.++.|+. -...+.|.+.++..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 34667888876433444434467777777653211 01111222235788999986655554 45568999999876
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
......+.........|+++|.+..|..+.. .+.|...++.......... ..-.+...+++.+.... ++++-...+
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~-LY~aD~~~~ 193 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK-LYWADAKLN 193 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTE-EEEEETTTC
T ss_pred CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCE-EEEEeCCCC
Confidence 4433323233455778999997665554443 3556655655443333332 23446788999986543 444555567
Q ss_pred eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Q psy6984 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 230 (380)
.|...|+..........+.......+++.++ ..+++-...+.|...|..+++....
T Consensus 194 ~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred eEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 8988888764433322222333456777766 5666666778899999877764433
No 297
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.08 E-value=0.036 Score=43.72 Aligned_cols=142 Identities=11% Similarity=-0.028 Sum_probs=78.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC--------eEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD--------VLSVAFSVDNRQIVSSSRDKTIKLWNTLA 137 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~ 137 (380)
.+..++|+|+|.+.+. .+|.++-.+..++....-+.. ... ..++.|.|+|.+.++ .||.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999999986666 677777777654222111110 111 478899999988877 568887776533
Q ss_pred cceE------EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-------eeEeeeCCccceEEEEEcCC
Q psy6984 138 HCKF------TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-------LKINHSGHTGYLNTVTVSPD 204 (380)
Q Consensus 138 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~ 204 (380)
.... ..+...--..+..|.+.|++. |.... |+.+.-....... ....-.+.-..-.-+.|.|+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 2111 112111123478899999763 55555 7775433322111 00001111222334567888
Q ss_pred CCEEEEEcCCCcEE
Q psy6984 205 GSLCASGGKDMNAM 218 (380)
Q Consensus 205 ~~~l~~~~~d~~i~ 218 (380)
+.+.++. ++.++
T Consensus 193 G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 193 GTLFGVQ--GGKFY 204 (236)
T ss_dssp SCEEEEE--TTEEE
T ss_pred CcEEEEe--CCeEE
Confidence 8777666 66443
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.96 E-value=0.099 Score=44.61 Aligned_cols=172 Identities=13% Similarity=0.189 Sum_probs=97.4
Q ss_pred EEeEEecCcccceEEEEeCCCC---CC---e-EEEeeC--CCeEEEeecCCCCCCcccccc---cccCCCcceEEEEE--
Q psy6984 7 QLRGTLNGHNGWVTQIATNPKF---PD---T-ILSCSR--DNTLIIWKLTRDDTNYGVPQK---RLKGHSHFISDIVL-- 72 (380)
Q Consensus 7 ~~~~~~~~h~~~v~~i~~~~~~---~~---~-l~t~~~--dg~v~vw~~~~~~~~~~~~~~---~~~~h~~~v~~~~~-- 72 (380)
++.+.+.. +.++.+..-|.. ++ + +++.-. +++|.+|+++........... .+..-...+..+++
T Consensus 60 ~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~ 137 (355)
T 3amr_A 60 KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYH 137 (355)
T ss_dssp CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEE
T ss_pred cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEe
Confidence 34445543 567776655421 11 2 333333 589999987543221110000 00011144566776
Q ss_pred ccC-CC-EEEEEeCCCcEEEEECC---C----CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----c
Q psy6984 73 SSD-GN-YALSGSWDKTLRLWDLA---A----GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-----H 138 (380)
Q Consensus 73 ~~~-~~-~l~s~~~d~~i~vwd~~---~----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-----~ 138 (380)
+|. ++ ++++...+|.+..|++. . .+.++++.. ...+-.+...+....|+.+-.+.-|-.++... .
T Consensus 138 ~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~ 216 (355)
T 3amr_A 138 SQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNG 216 (355)
T ss_dssp CTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCC
T ss_pred cCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCc
Confidence 664 44 68888999999999883 2 244555543 35677888899888999999986654445321 1
Q ss_pred ceEEEeeCCC-cCcEEEEEEcc--CCCCCEEEEEeCCCeEEEEeCC
Q psy6984 139 CKFTIVEDGH-SDWVSCVRFSP--NHQNPIIVSAGWDRMVKVWNLT 181 (380)
Q Consensus 139 ~~~~~~~~~~-~~~v~~~~~~~--~~~~~~l~s~~~d~~v~iwd~~ 181 (380)
........++ ...+..+++.+ +++..+++++-.+.+..+||..
T Consensus 217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 1222222222 23588888853 3333345555567899999985
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.89 E-value=0.29 Score=45.87 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=112.9
Q ss_pred CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984 37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 115 (380)
....|+.-++........++ +.+ -..+..++|++....|+.+ ..++.|..+++........+..-......++++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~---~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIP---LTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEEECC---CCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcceEEE---cCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence 45688888886533211111 112 2346789999876666654 456889999987654443333223456788998
Q ss_pred CCCCEE-EEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCc
Q psy6984 116 VDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHT 193 (380)
Q Consensus 116 ~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~ 193 (380)
+.+..| ++-...+.|.+.++.......... ..-.....+++.|.... ++.+- +..+.|...++.......... ..
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~ 165 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEEC-SC
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEEC-CC
Confidence 766655 455566788888876544433332 23345688999985432 33332 235678888876544333232 34
Q ss_pred cceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc
Q psy6984 194 GYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGK 226 (380)
Q Consensus 194 ~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~ 226 (380)
...+.++++++++. +++=...+.|..+|+....
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence 57889999997554 4555667889999986543
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.88 E-value=0.18 Score=43.44 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=58.2
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc-cccccCCCcceEEEEEccC---CCEEEEEeC-C-----Cc
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP-QKRLKGHSHFISDIVLSSD---GNYALSGSW-D-----KT 87 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~---~~~l~s~~~-d-----~~ 87 (380)
....|++.|+ +.+ +.+..+|.|++++ ... ...+. .............++++|+ +..|+.+.. . ..
T Consensus 32 ~P~~ia~~pd-G~l-~V~e~~g~I~~i~-~g~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPD-GGM-LIAERPGRIRLFR-EGR--LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTT-SCE-EEEETTTEEEEEE-TTE--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCC-CeE-EEEeCCCeEEEEE-CCC--ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4568999987 454 4456679998887 211 10000 0011222345789999998 555554443 2 57
Q ss_pred EEEEECCCCce------eeeec---ccCCCeEEEEEeCCCCEEEEEe
Q psy6984 88 LRLWDLAAGKT------TRRFE---DHTKDVLSVAFSVDNRQIVSSS 125 (380)
Q Consensus 88 i~vwd~~~~~~------~~~~~---~h~~~v~~~~~~~~~~~~~s~~ 125 (380)
|..++...++. ...+. ........++|.|||.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88888765421 11122 1111235799999997666643
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.79 E-value=0.21 Score=42.61 Aligned_cols=270 Identities=11% Similarity=0.040 Sum_probs=126.9
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE----DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 141 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~ 141 (380)
.+.++.+.+++..++ ++.+|.| +.....++.-.... .....+.++.|.+ +..++ ++..+.|..- ...+...
T Consensus 37 ~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~tW 111 (327)
T 2xbg_A 37 TILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQSW 111 (327)
T ss_dssp CEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEEE-SSTTSSC
T ss_pred cEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEEE-CCCCCCc
Confidence 588898887777777 4556765 33344444333322 1234688899976 44444 4455644432 2222222
Q ss_pred EEeeC--CCcCcEEEEEEccCCCCCEEEEEeCCCeE-EEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984 142 TIVED--GHSDWVSCVRFSPNHQNPIIVSAGWDRMV-KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM 218 (380)
Q Consensus 142 ~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 218 (380)
..... .+...+..+.+.+++ .+++. +.++.| +-.|-.. .-.....+....+..+.+.|++++++.+...+..+
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~g~v~~S~DgG~-tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNG--SAEMI-TNVGAIYRTKDSGK-NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETT--EEEEE-ETTCCEEEESSTTS-SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred eECccccCCCCCeEEEEEECCC--CEEEE-eCCccEEEEcCCCC-CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 22211 122346667765533 23444 445544 3333211 11111223455688899999998887775443333
Q ss_pred EEEC--CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-c---cccceeEEEEee
Q psy6984 219 LWDL--NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-S---LFRDVLSVAFSV 292 (380)
Q Consensus 219 i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~s~ 292 (380)
-.|- .+-+.+. ......+..+.+.+++...... ..+.++......++--.... . ....+.++++.+
T Consensus 188 S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-------~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 188 TWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-------NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-------TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred EeCCCCCceeECC-CCCCCccceeEECCCCCEEEEe-------CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 3332 1112221 1223455666666655332111 11222221111121111111 1 123477888888
Q ss_pred cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984 293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372 (380)
Q Consensus 293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~ 372 (380)
++..++.+ .+|.|. +....+. +-.. ... ....+..+..+.|.++++ +++++.+|.|.-++
T Consensus 260 ~~~~~~~g-~~g~i~-~S~DgG~--------tW~~---~~~------~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNEVWLAG-GAGALL-CSQDGGQ--------TWQQ---DVD------VKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SSCEEEEE-STTCEE-EESSTTS--------SCEE---CGG------GTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCEEEEEe-CCCeEE-EeCCCCc--------ccEE---cCc------cCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 87776665 467663 3221111 1100 000 000122356788876666 44566789776554
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.64 E-value=0.25 Score=41.60 Aligned_cols=129 Identities=6% Similarity=0.119 Sum_probs=83.9
Q ss_pred CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
+..|.+.|+.+.......+- ...+..++|..+.+|.-. ...+.+||+++.+.++.....+.+.-..|-.......
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l- 122 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL- 122 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEE-
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEE-
Confidence 34788889987554332221 123456799999888776 6789999999999999999888888888866543322
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeeccc-----cceeEEEEeecCCEEEEeeC-------CCcEEEEecc
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSLF-----RDVLSVAFSVDNRQIVSSSR-------DKTIKLWNTL 312 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~-------dg~v~iw~~~ 312 (380)
.....++-|++.........+..+ ..|.....+++.++++-.+- .|.+++|...
T Consensus 123 -------VT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 123 -------VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp -------EESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred -------EcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 234567778775432222222222 34667777888888664332 3567777653
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.62 E-value=0.21 Score=43.70 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=83.3
Q ss_pred CeEEEeecCCCCCCcccccccccCC--CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce------------eeeecc
Q psy6984 39 NTLIIWKLTRDDTNYGVPQKRLKGH--SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT------------TRRFED 104 (380)
Q Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------------~~~~~~ 104 (380)
+.||.-++.... .|... .+..| -..|..+..+|+|++||..+. ..|.|-.+..+.. .+.+.-
T Consensus 41 n~iR~~~i~~~~-~Yk~L--~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 41 NIIRWYNVLTDS-LYHSL--NFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp TEEEEEETTTCS-SCEEE--ECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred CEEEEEECCCCC-cceEE--ecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEc
Confidence 577766665322 34321 11111 114678999999999999875 4899988863310 112221
Q ss_pred ------cCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcce-EEEe--------eCCCcCcEEEEEEccCCCCCEE
Q psy6984 105 ------HTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCK-FTIV--------EDGHSDWVSCVRFSPNHQNPII 166 (380)
Q Consensus 105 ------h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~-~~~~--------~~~~~~~v~~~~~~~~~~~~~l 166 (380)
...+|..+.|+|- +..+++-..|+.|++||+..... ...+ .......|.+++|.+++-..++
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 2467999999984 56899999999999999764211 1111 1223356889999886544444
Q ss_pred EEEeCCCeEEE
Q psy6984 167 VSAGWDRMVKV 177 (380)
Q Consensus 167 ~s~~~d~~v~i 177 (380)
++...+|.|.-
T Consensus 197 l~~t~~GDIYA 207 (452)
T 3pbp_A 197 LNTTEGGDIFA 207 (452)
T ss_dssp EECTTSCEEEE
T ss_pred EecCCCCCEEE
Confidence 44556677754
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.55 E-value=0.27 Score=41.06 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCEEEEEe-CC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcc--
Q psy6984 75 DGNYALSGS-WD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHC-- 139 (380)
Q Consensus 75 ~~~~l~s~~-~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~-- 139 (380)
++..++.|+ .+ ..+.+||..+++-... +...... .+++ ..++..++.|+.+ ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555555 22 3688899877642221 1111111 1222 2356666777654 357888876543
Q ss_pred -eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEE
Q psy6984 140 -KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 140 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-.... +........+.+ ++++++.|
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 166 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLG 166 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEEC
T ss_pred eeEECCCCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEEC
Confidence 2211111111111122222 2 2355556543 35888898775433221 111111122222 67777787
Q ss_pred cCC-----CcEEEEECCCCcE
Q psy6984 212 GKD-----MNAMLWDLNDGKH 227 (380)
Q Consensus 212 ~~d-----~~i~i~d~~~~~~ 227 (380)
+.+ ..+.+||+.+.+-
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcE
Confidence 764 4688899877653
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.49 E-value=0.56 Score=43.89 Aligned_cols=201 Identities=6% Similarity=-0.034 Sum_probs=112.6
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG 96 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~ 96 (380)
.+..|++.+..+.++++-...+.|+.++++..... ......-.....+++...+..| .+-+..+.|.+.++...
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~-----~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ-----FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE-----EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 35567777753334444445677777776532111 1111222346688898655544 45456688999998754
Q ss_pred ceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984 97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174 (380)
Q Consensus 97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~ 174 (380)
.....+...-....++++.|....|..+.. ...|...++......... ...-.+...|++.+.... ++++-+..+.
T Consensus 425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~l~~P~GlalD~~~~~-LY~aD~~~~~ 502 (619)
T 3s94_A 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-NTSLGWPNGLALDYDEGK-IYWGDAKTDK 502 (619)
T ss_dssp SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-eCCCCCCeeeEEcccCCE-EEEEECCCCE
Confidence 332222233456789999997444444332 356666655544333333 233456788999875443 4444455678
Q ss_pred EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984 175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK 226 (380)
Q Consensus 175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 226 (380)
|..+++...............+..+++..+ .++++-...+.|...|..++.
T Consensus 503 I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 503 IEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 988988654433222222233445665543 455555566677777777664
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.56 Score=42.29 Aligned_cols=159 Identities=8% Similarity=0.039 Sum_probs=89.0
Q ss_pred ceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE-------ccCCCEEEEEeCCC---
Q psy6984 18 WVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL-------SSDGNYALSGSWDK--- 86 (380)
Q Consensus 18 ~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~~~d~--- 86 (380)
....|++.|. .+.++++-...+.|++.|+...... .+ .............++| ++++++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 3567888873 3334444443456666665432111 11 1111112335789999 99999777766554
Q ss_pred ----cEEEEECCC-Ccee-----eeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCC-------Ccce--------
Q psy6984 87 ----TLRLWDLAA-GKTT-----RRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTL-------AHCK-------- 140 (380)
Q Consensus 87 ----~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~-------~~~~-------- 140 (380)
.|.+.+... ++.. ..+.. ......++++|+ +.++++-..++.|..+|.. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266666443 2221 22221 123457788994 5556667788889999975 2221
Q ss_pred ---E-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984 141 ---F-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180 (380)
Q Consensus 141 ---~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 180 (380)
. .....+...+-..++++|++.. ++++-.....|+.++.
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~-lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKY-AYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCE-EEEEeCCCCEEEEEec
Confidence 1 1222233345678999998652 3455556778888654
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.24 E-value=0.43 Score=39.91 Aligned_cols=144 Identities=10% Similarity=0.129 Sum_probs=66.6
Q ss_pred CEEEEEeCC----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEEEee
Q psy6984 77 NYALSGSWD----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 77 ~~l~s~~~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~~~~ 145 (380)
..++.|+.+ ..+..||+.+++-... +...... .+++ ..++..++.|+.+ ..+.+||..+..-.....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344455533 3578888877642221 1111111 1122 2256666676644 357778865543222211
Q ss_pred CCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCC----
Q psy6984 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKD---- 214 (380)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d---- 214 (380)
......-.+++.. + +.+++.|+.++ .+.+||+.+.+-... .+........+. -++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 95 MRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTT
T ss_pred CCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCC
Confidence 1111111122222 2 23555666543 477888876543221 111111112222 256677777653
Q ss_pred ---CcEEEEECCCCcE
Q psy6984 215 ---MNAMLWDLNDGKH 227 (380)
Q Consensus 215 ---~~i~i~d~~~~~~ 227 (380)
..+.+||+.+.+-
T Consensus 170 ~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 170 QCLSTVECYNATTNEW 185 (302)
T ss_dssp EECCCEEEEETTTTEE
T ss_pred ccccEEEEEeCCCCcE
Confidence 3588899877653
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.22 E-value=0.51 Score=40.65 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=61.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE-----eeCCCcCcEEEEEEccC---CCCCEEEEEeC-------
Q psy6984 107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI-----VEDGHSDWVSCVRFSPN---HQNPIIVSAGW------- 171 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~---~~~~~l~s~~~------- 171 (380)
.....++|.|+|+.++.+...+.|++++......... ...........++++|+ ... ++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence 3567899999998344555678898887432111000 00111234678999985 222 3333222
Q ss_pred CCeEEEEeCCCc--e---e--eE-eee---CCccceEEEEEcCCCCEEEEEcC-------------CCcEEEEECC
Q psy6984 172 DRMVKVWNLTNC--K---L--KI-NHS---GHTGYLNTVTVSPDGSLCASGGK-------------DMNAMLWDLN 223 (380)
Q Consensus 172 d~~v~iwd~~~~--~---~--~~-~~~---~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~ 223 (380)
...|..|++... . . +. ... ........+.|.|||.++++.+. .+.|.-++..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666665432 1 1 11 111 11112457999999976666543 2467777654
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.93 E-value=0.6 Score=38.91 Aligned_cols=144 Identities=13% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEE
Q psy6984 75 DGNYALSGSWD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFT 142 (380)
Q Consensus 75 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~ 142 (380)
+++.++.|+.+ ..+.+||+.+++-... +....... +++. .++..++.|+.+ ..+.+||..+..-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56677777654 3688999877643321 11111111 1222 256666776654 357788865543222
Q ss_pred EeeCCCcC-cEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcCC
Q psy6984 143 IVEDGHSD-WVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGKD 214 (380)
Q Consensus 143 ~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d 214 (380)
........ ...++.+ + +.+++.|+.+ ..+.+||+.+.+-.... +........+.+ ++++++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~~--~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL--N--DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp ECCCSSCCBSCEEEEE--T--TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCCCCcccccceEEEE--C--CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence 21111111 1122222 1 2355666654 46889999876533221 111111122222 56677777765
Q ss_pred -----CcEEEEECCCCc
Q psy6984 215 -----MNAMLWDLNDGK 226 (380)
Q Consensus 215 -----~~i~i~d~~~~~ 226 (380)
..+.+||+.+.+
T Consensus 264 ~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSSBEEEEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 346667766543
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.87 E-value=0.76 Score=39.57 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=75.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeeec---ccCCCeEEEEEeCC---CCEEEEEeC----C----CcE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-TTRRFE---DHTKDVLSVAFSVD---NRQIVSSSR----D----KTI 130 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---~h~~~v~~~~~~~~---~~~~~s~~~----d----~~v 130 (380)
....++|.|+|+ |+.+..++.|++++ .+++ .+..+. ........++++|+ +..|..+.. + ..|
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 457899999997 55556679999997 3454 111111 11245789999997 444443332 2 456
Q ss_pred EEEeCCCc-----ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCCc------
Q psy6984 131 KLWNTLAH-----CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTNC------ 183 (380)
Q Consensus 131 ~iwd~~~~-----~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~~------ 183 (380)
..|+.... ..... +..........++|.|++. ++++.+. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 66664332 01111 1111111235689999763 4554332 245555554322
Q ss_pred --eeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984 184 --KLKINHSGHTGYLNTVTVSP-DGSLCASG 211 (380)
Q Consensus 184 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 211 (380)
.......++. ....++|+| +|+++++-
T Consensus 186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp STTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 1122223333 356799999 67766554
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.59 E-value=1.1 Score=39.33 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=93.6
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCceeeeeccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-------
Q psy6984 71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC------- 139 (380)
Q Consensus 71 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~------- 139 (380)
....+|..++.+-. +.||.-++.++..-+.+..- -..|..+..+|+|+++|..+.. .|.+-.+....
T Consensus 27 ~~~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccc
Confidence 34456666666553 57877777754433333221 2357889999999999887554 67777665211
Q ss_pred -----eEEEeeCC-----CcCcEEEEEEccCCC-CCEEEEEeCCCeEEEEeCCCce--ee--------EeeeCCccceEE
Q psy6984 140 -----KFTIVEDG-----HSDWVSCVRFSPNHQ-NPIIVSAGWDRMVKVWNLTNCK--LK--------INHSGHTGYLNT 198 (380)
Q Consensus 140 -----~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~--~~--------~~~~~~~~~i~~ 198 (380)
......-+ ....|..+.|+|-+. ...|++-..|+.||+||+.... .. .........|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 01111111 245699999999763 3578888899999999997511 11 111122356888
Q ss_pred EEEcCCCCEEEE--EcCCCcEEEEECC
Q psy6984 199 VTVSPDGSLCAS--GGKDMNAMLWDLN 223 (380)
Q Consensus 199 ~~~~~~~~~l~~--~~~d~~i~i~d~~ 223 (380)
++|.+++-.|.. .+..|.|+-.-.-
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAlcP~ 211 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAFYPF 211 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEESSC
T ss_pred EEEcCCCcEEEEEecCCCCCEEEECCC
Confidence 999987766555 4477877765443
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.19 E-value=1.3 Score=37.95 Aligned_cols=154 Identities=11% Similarity=0.125 Sum_probs=87.1
Q ss_pred ceEEEEEccCCCEEEEEe------------CCCcEEEEECCCCc-eeeee--cc-----cCCCeEEEEEeC--CCC--EE
Q psy6984 66 FISDIVLSSDGNYALSGS------------WDKTLRLWDLAAGK-TTRRF--ED-----HTKDVLSVAFSV--DNR--QI 121 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~~~-~~~~~--~~-----h~~~v~~~~~~~--~~~--~~ 121 (380)
...++.+.|+|..+++++ .+|.|.++|.++.. ...++ .+ ..-....+.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 456777888875544442 68999999987421 12222 21 123466777765 454 33
Q ss_pred EEEeC--CCcEEEEeCCCc-ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEe-----------------CCCeEEEE
Q psy6984 122 VSSSR--DKTIKLWNTLAH-CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAG-----------------WDRMVKVW 178 (380)
Q Consensus 122 ~s~~~--d~~v~iwd~~~~-~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~-----------------~d~~v~iw 178 (380)
++-.. +..+.+|+.... ..... .....-...+.+++.+++. ++++.. ..+.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 33333 467778775432 22211 2222234578888888654 444433 12455555
Q ss_pred eCCCceeeEeeeCCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCC
Q psy6984 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLND 224 (380)
Q Consensus 179 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~ 224 (380)
|.. +... ....-...+.++|+||++.+..+ +..+.|+.|++..
T Consensus 209 d~~--~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 209 SPN--DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CTT--CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ECC--eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 553 2222 12223467999999999876554 5678999999863
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.17 E-value=1.7 Score=38.92 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=37.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--eecc------cCCCeEEEEEeCC---CCEEEE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR--RFED------HTKDVLSVAFSVD---NRQIVS 123 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~------h~~~v~~~~~~~~---~~~~~s 123 (380)
....++|.|+|+++++-...+.|++++..+++... .+.. .......|+|+|+ +..|..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence 45789999999877765544579988866554332 2211 2345779999995 444443
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.02 E-value=1.3 Score=36.93 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=68.7
Q ss_pred EEEEEeC--CCcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceEEEeeCCCc
Q psy6984 78 YALSGSW--DKTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKFTIVEDGHS 149 (380)
Q Consensus 78 ~l~s~~~--d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~~~~~~~~~ 149 (380)
.++.|+. ...+.+||..+++-... +.........+. .++..++.|+.+ ..+.+||..+..-.........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 35788999887643221 111111111222 356666777654 5677788665432222111111
Q ss_pred CcEEEEEEccCCCCCEEEEEeCC------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC--------
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAGWD------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK-------- 213 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-------- 213 (380)
..-.+++.. + +.+++.|+.+ ..+.+||..+.+-... .+........+. -++++++.|+.
T Consensus 92 r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 92 RDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCE
T ss_pred ccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccc
Confidence 111122222 2 2355666654 4588899877543221 111111112222 25677777764
Q ss_pred -CCcEEEEECCCCc
Q psy6984 214 -DMNAMLWDLNDGK 226 (380)
Q Consensus 214 -d~~i~i~d~~~~~ 226 (380)
-..+.+||+.+.+
T Consensus 167 ~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 167 VLNSCEVYDPATET 180 (306)
T ss_dssp ECCCEEEEETTTTE
T ss_pred ccceEEEeCCCCCe
Confidence 3458889988765
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.67 E-value=1.6 Score=36.29 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCcce
Q psy6984 75 DGNYALSGSWDK-----TLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-------KTIKLWNTLAHCK 140 (380)
Q Consensus 75 ~~~~l~s~~~d~-----~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-------~~v~iwd~~~~~~ 140 (380)
+++.++.|+.++ .+.+||+.+++-... +...... .+++. .++..++.|+.+ ..+.+||..+..-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 567777777653 577899877643322 1111111 12222 256666666532 3477888655432
Q ss_pred EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcC
Q psy6984 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGK 213 (380)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~ 213 (380)
...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-.... +........+. -++++++.|+.
T Consensus 186 ~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~ 260 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL-N--NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGD 260 (302)
T ss_dssp EEECCCSSCCBSCEEEEE-T--TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred EECCCCccccccccEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence 222111111111122222 1 2355666654 36888998775432211 11111111222 25677777776
Q ss_pred CC-----cEEEEECCCCc
Q psy6984 214 DM-----NAMLWDLNDGK 226 (380)
Q Consensus 214 d~-----~i~i~d~~~~~ 226 (380)
++ .+.+||+.+.+
T Consensus 261 ~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccccEEEEcCCCCe
Confidence 53 46777776553
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.39 E-value=1.5 Score=34.69 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=61.1
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--cccc-ccc--cCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQ-KRL--KGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~-~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 91 (380)
..+++++++|+ +.+.+. .+|. +|..+...... .... ..+ .+.. ...++.|.|+|.+.++ .||.|+-+
T Consensus 41 ~~~~~laf~P~-G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 41 SNFKFLFLSPG-GELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TTCSEEEECTT-SCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred ccceeEEECCC-ccEEEE--eCCe--EEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEe
Confidence 36779999995 555554 5675 55544321110 0000 111 0111 1478999999987777 56999888
Q ss_pred ECCCCcee------eee-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy6984 92 DLAAGKTT------RRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIK 131 (380)
Q Consensus 92 d~~~~~~~------~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~ 131 (380)
+..+.... .++ ..--..+..|.|.|+|.+.+.. |+.+.
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 76332111 111 1122568999999999988777 66653
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.35 E-value=2.2 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-------ccCCCeEEEEEeCC
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-------DHTKDVLSVAFSVD 117 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~ 117 (380)
....++|.|+|++|+.+...|.|++++.. ++....+. ........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence 35789999999844455667999999853 33221111 11235688999996
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.21 E-value=2.1 Score=35.67 Aligned_cols=145 Identities=9% Similarity=0.081 Sum_probs=70.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEeCCC
Q psy6984 75 DGNYALSGSWD------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR---------DKTIKLWNTLA 137 (380)
Q Consensus 75 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~---------d~~v~iwd~~~ 137 (380)
+++.++.|+.+ ..+.+||..+++-... +....... +++. .++..++.|+. -..+.+||..+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 66777777765 4688999887643222 11111111 1222 35666666653 34577888765
Q ss_pred cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEE
Q psy6984 138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCAS 210 (380)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~ 210 (380)
..-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-... .+........+.+ ++++++.
T Consensus 179 ~~W~~~~~~p~~r~~~~~~~~-~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 179 ETWTELCPMIEARKNHGLVFV-K--DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred CeEEECCCccchhhcceEEEE-C--CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 432222111111111122222 2 2255555543 3578899877543221 1111112222223 6677888
Q ss_pred EcCC-----CcEEEEECCCCc
Q psy6984 211 GGKD-----MNAMLWDLNDGK 226 (380)
Q Consensus 211 ~~~d-----~~i~i~d~~~~~ 226 (380)
|+.+ ..+.+||+.+.+
T Consensus 254 GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTTE
T ss_pred eCcCCCeeeeeEEEEcCCCCe
Confidence 8754 456777776654
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.02 E-value=2.3 Score=35.50 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=68.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEE
Q psy6984 75 DGNYALSGSWD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFT 142 (380)
Q Consensus 75 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~ 142 (380)
+++.++.|+.+ ..+.+||..+++-... +.........+.+ ++..++.|+.+ ..+.+||..+..-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 56677777643 3688999877643221 1111111122222 56666666654 457788865432211
Q ss_pred EeeCCCcC-cEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984 143 IVEDGHSD-WVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKD 214 (380)
Q Consensus 143 ~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d 214 (380)
........ ...++.+ + +.+++.|+.+ ..+.+||+.+.+-... .+........+.+ ++++++.|+.+
T Consensus 199 ~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 272 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--H--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYD 272 (308)
T ss_dssp CCCCSSCCBSCEEEEE--T--TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCCCCCccccceEEEE--C--CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcC
Confidence 11101111 1122222 2 2355666654 4688999877543321 1111111122222 56777777754
Q ss_pred -----CcEEEEECCCCc
Q psy6984 215 -----MNAMLWDLNDGK 226 (380)
Q Consensus 215 -----~~i~i~d~~~~~ 226 (380)
..+.+||+.+.+
T Consensus 273 ~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCBCCEEEEEETTTTE
T ss_pred CCcccceEEEEcCCCCE
Confidence 346667766543
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.78 E-value=2.9 Score=35.86 Aligned_cols=181 Identities=12% Similarity=0.188 Sum_probs=97.1
Q ss_pred CCCeEEEeecCCCCCC-ccccccc--ccCCCcceEEEEEcc--CCC-EEEEE-eC--CCcEEEEECCCC-ce---eeeec
Q psy6984 37 RDNTLIIWKLTRDDTN-YGVPQKR--LKGHSHFISDIVLSS--DGN-YALSG-SW--DKTLRLWDLAAG-KT---TRRFE 103 (380)
Q Consensus 37 ~dg~v~vw~~~~~~~~-~~~~~~~--~~~h~~~v~~~~~~~--~~~-~l~s~-~~--d~~i~vwd~~~~-~~---~~~~~ 103 (380)
.+|.|.++|+...... ..+.... +.........+.+.+ +++ +|+.+ .. +..|.+|++..+ .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999997632111 1111111 111122345666654 454 44444 33 467777776543 22 22233
Q ss_pred cc-CCCeEEEEEeCCCCEEEEEe-----------------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984 104 DH-TKDVLSVAFSVDNRQIVSSS-----------------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI 165 (380)
Q Consensus 104 ~h-~~~v~~~~~~~~~~~~~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (380)
+. -....++++.++|.+.++.. ..+.+..+|.. .. ..... .-...+.++|+|+++. +
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~-~l~~pNGia~spDg~~-l 235 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAE-GFDFANGINISPDGKY-V 235 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEE-EESSEEEEEECTTSSE-E
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeec-CCcccCcceECCCCCE-E
Confidence 22 23478899999998777654 12345445432 11 11111 1234678999998753 4
Q ss_pred EEEEeCCCeEEEEeCCC-ceee--EeeeCCccceEEEEEcC-CCCEEEEEcCC-CcEEEEECC
Q psy6984 166 IVSAGWDRMVKVWNLTN-CKLK--INHSGHTGYLNTVTVSP-DGSLCASGGKD-MNAMLWDLN 223 (380)
Q Consensus 166 l~s~~~d~~v~iwd~~~-~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-~~i~i~d~~ 223 (380)
+++-+..+.|..|++.. +++. ..+ ...+....+++++ +|++.+++..+ ++|..|+..
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 45556678999999863 2221 112 1245678889999 58877766533 455545443
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.75 E-value=3 Score=35.83 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee----CCCcCcEEEEEEccC---CCCCEEEEEeC---C----
Q psy6984 107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE----DGHSDWVSCVRFSPN---HQNPIIVSAGW---D---- 172 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~~l~s~~~---d---- 172 (380)
.....++|.|+|+.+ .+..++.|++++.. +. ..... .........++++|+ ... ++++-.. +
T Consensus 29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYL-VTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEE-EEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEE-EEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCcc
Confidence 456789999999744 45566899888733 22 11111 112245788999986 222 3333221 3
Q ss_pred CeEEEEeCCCc-------eeeE-eeeC-CccceEEEEEcCCCCEEEEEc
Q psy6984 173 RMVKVWNLTNC-------KLKI-NHSG-HTGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 173 ~~v~iwd~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~ 212 (380)
..|..|+.... +... .... .......++|.|+|.++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543 1111 1221 112346799999998777643
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.67 E-value=3 Score=35.64 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee--e----cccCCCeEEEEEeCC----CCEEEEEe--CCCcEEEE
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR--F----EDHTKDVLSVAFSVD----NRQIVSSS--RDKTIKLW 133 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~----~~h~~~v~~~~~~~~----~~~~~s~~--~d~~v~iw 133 (380)
..+.++|.|||+++++--..|.|++++..+++.... + .........++++|+ +.+.++-+ .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 457899999999777766589999998765554221 1 122345789999995 43333322 34445545
Q ss_pred eCCCc--------ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCCc------
Q psy6984 134 NTLAH--------CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTNC------ 183 (380)
Q Consensus 134 d~~~~--------~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~~------ 183 (380)
..... ....+ +.....-....++|.|++. ++++.+. .+.|.-.+....
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 43321 11111 1111111235689998763 5555432 244444444321
Q ss_pred --eeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984 184 --KLKINHSGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 184 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
.......+|. ....++|+|+|+++++-
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 1122233443 45778999988776653
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.58 E-value=7 Score=39.56 Aligned_cols=113 Identities=8% Similarity=-0.005 Sum_probs=68.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCC------CCEEEEEeC-CCcEEEEeCCC
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVD------NRQIVSSSR-DKTIKLWNTLA 137 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~------~~~~~s~~~-d~~v~iwd~~~ 137 (380)
.|...+.+ +.+++.++ ++.+.++++.+++..... ..-..+|.|+++.|. +.+++.|.. |++++|+++..
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 35555544 34666665 678888887665432211 123467999999763 368999996 99999999865
Q ss_pred cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984 138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT 181 (380)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 181 (380)
-........+......++.+..-+...+|..|-.||.+..+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 33332222222223445544432334578888889987655543
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.35 E-value=3.1 Score=34.73 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=67.4
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC----C-----CcEEEEeCCCcc
Q psy6984 75 DGNYALSGSWD----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR----D-----KTIKLWNTLAHC 139 (380)
Q Consensus 75 ~~~~l~s~~~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~----d-----~~v~iwd~~~~~ 139 (380)
++..++.|+.+ ..+.+||..+++-... +...... .+++. .++..++.|+. + ..+.+||..+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666632 3688888876543221 1111111 12222 25666666654 2 356777765543
Q ss_pred eEEEee--CCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEE
Q psy6984 140 KFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCAS 210 (380)
Q Consensus 140 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~ 210 (380)
-..... ..... ...+.+ + +.+++.|+.+ ..+.+||+.+.+-... .+........+.+ ++++++.
T Consensus 102 W~~~~~~p~~r~~-~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 102 WSPCAPMSVPRNR-IGVGVI--D--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp EEECCCCSSCCBT-CEEEEE--T--TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred EeECCCCCcCccc-cEEEEE--C--CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE
Confidence 211111 11111 112222 2 2245555433 3578888876543221 1111111222222 6677777
Q ss_pred EcCC-----CcEEEEECCCCc
Q psy6984 211 GGKD-----MNAMLWDLNDGK 226 (380)
Q Consensus 211 ~~~d-----~~i~i~d~~~~~ 226 (380)
|+.+ ..+.+||+.+.+
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTE
T ss_pred eCCCCCCcCceEEEEeCCCCe
Confidence 7764 468888987764
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.92 E-value=5.4 Score=36.40 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=49.3
Q ss_pred ccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984 280 SLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT 358 (380)
Q Consensus 280 ~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 358 (380)
........+.++|||++++.++ .+.+|.++++.+-... + ..+. +.+.........-...-+..+|.++|.-
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~--~---~~k~---~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDL--F---AGKL---ADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--H---TTCC---SCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhh--h---hccc---cCcccceEeeccCCCcccEEEECCCCce
Confidence 3344556789999999977655 4789999886431110 0 0000 0000000000111223457889999943
Q ss_pred EEEEeeCCeEEEEEeee
Q psy6984 359 LFAGYSDNTIRVWQVSV 375 (380)
Q Consensus 359 l~~g~~dg~v~iw~~~~ 375 (380)
..+-.-|..|..|++..
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 33444799999999864
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.50 E-value=3.7 Score=42.04 Aligned_cols=128 Identities=6% Similarity=0.120 Sum_probs=82.0
Q ss_pred CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251 (380)
Q Consensus 172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 251 (380)
...|.+.|+.++......+ -.-.+..++|..+.+|.-. ...+.+||+++.+.+.....++.|.-..|-......
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~-- 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA-- 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeE--
Confidence 3478888887754332211 1223456789888887765 679999999999988888888888888886554322
Q ss_pred eeeeeeeccccceEEEEcCCceeeeeeecc-----ccceeEEEEeecCCEEEEee-------CCCcEEEEec
Q psy6984 252 KLDISRTLQKSNLILYPINHGKMETPFFSL-----FRDVLSVAFSVDNRQIVSSS-------RDKTIKLWNT 311 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~-------~dg~v~iw~~ 311 (380)
-.....++.|++.........+.. ...|..-..+++.++++..| -.|.+++|..
T Consensus 121 ------lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 121 ------LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred ------EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 123466778887542222112221 23577778888888876433 2467888865
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.46 E-value=10 Score=38.41 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=91.4
Q ss_pred eEEEEeCCCceeeEeee-CCccceEEEE---EcCC-CCEEEEEc----------CCCcEEEEECCCCc--EEEEEEecCc
Q psy6984 174 MVKVWNLTNCKLKINHS-GHTGYLNTVT---VSPD-GSLCASGG----------KDMNAMLWDLNDGK--HLHTLVHNDI 236 (380)
Q Consensus 174 ~v~iwd~~~~~~~~~~~-~~~~~i~~~~---~~~~-~~~l~~~~----------~d~~i~i~d~~~~~--~~~~~~~~~~ 236 (380)
.|++.|..+.+....+. .....+.+++ |..+ ..+++.|. ..|.|++|++..++ .++....++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 46666666555432222 1223344443 3332 46888775 35889999986443 2233345677
Q ss_pred eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK 316 (380)
Q Consensus 237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 316 (380)
+.+++--.. .. ... ....+++|+....+....-......+..+.....+.+++.|+.-..|.+...
T Consensus 888 v~al~~~~g-~L-la~-------ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y----- 953 (1158)
T 3ei3_A 888 VYSMVEFNG-KL-LAS-------INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY----- 953 (1158)
T ss_dssp EEEEEEETT-EE-EEE-------ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE-----
T ss_pred CEEEeeeCC-EE-EEE-------cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE-----
Confidence 777774332 11 111 1355777887655432211112222333334345778888887777776542
Q ss_pred eeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984 317 FTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374 (380)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~ 374 (380)
+....++.. + .....+.+++++.+=.++ .++.+..+|.+.+.+..
T Consensus 954 ----~~~~~~L~~-~-------a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 954 ----KPMEGNFEE-I-------ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp ----ETTTTEEEE-E-------EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEEC
T ss_pred ----EcCCCeEEE-E-------EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecC
Confidence 112222111 1 112234567777776554 56667889999888764
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.04 E-value=4.7 Score=33.65 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC-C-----CcEEEEeCCCc
Q psy6984 75 DGNYALSGSWD--------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR-D-----KTIKLWNTLAH 138 (380)
Q Consensus 75 ~~~~l~s~~~d--------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~-d-----~~v~iwd~~~~ 138 (380)
+++.++.|+.+ ..+.+||..+++-... +...... .+++ ..++..++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 56667777742 4588999887642221 1111111 1122 235666667765 2 35778886554
Q ss_pred ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEE
Q psy6984 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
.-...........-.+++.. + +.+++.|+.++ .+.+||+.+.+-.... +........+.+ ++++++.|
T Consensus 176 ~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~G 250 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATVH-D--GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIG 250 (315)
T ss_dssp EEEECCCCSSCCBSCEEEEE-T--TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEE
T ss_pred eEEECCCCCCchhceEEEEE-C--CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEEC
Confidence 22111111111111122222 2 23556666543 5788888775432221 111111122222 55677777
Q ss_pred cCC
Q psy6984 212 GKD 214 (380)
Q Consensus 212 ~~d 214 (380)
+.+
T Consensus 251 G~~ 253 (315)
T 4asc_A 251 GFA 253 (315)
T ss_dssp EEE
T ss_pred Ccc
Confidence 653
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.33 E-value=5.7 Score=33.16 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=66.5
Q ss_pred EEEEeCCCcEEEEECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeC-----C--C----cEEEEeCCCcceEEEeeC
Q psy6984 79 ALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSR-----D--K----TIKLWNTLAHCKFTIVED 146 (380)
Q Consensus 79 l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~-----d--~----~v~iwd~~~~~~~~~~~~ 146 (380)
++.|+ ..+.+||..+++-.. .+..............++..++.|+. . . .+..||..+..-. ....
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCC
Confidence 44455 578999998876332 11111112222233457777777773 1 1 2566776543221 1111
Q ss_pred -CCcCcEEEEEEccCCCCCEEEEEeCC--------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC-C
Q psy6984 147 -GHSDWVSCVRFSPNHQNPIIVSAGWD--------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK-D 214 (380)
Q Consensus 147 -~~~~~v~~~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d 214 (380)
.....-.+++.. + +.+++.|+.+ ..+.+||..+.+-... .+........+ .-++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 85 LPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGS 159 (315)
T ss_dssp BSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCT
T ss_pred CCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCC
Confidence 000000112222 1 2245555532 4588889877543221 11111111222 235667777776 2
Q ss_pred -----CcEEEEECCCCc
Q psy6984 215 -----MNAMLWDLNDGK 226 (380)
Q Consensus 215 -----~~i~i~d~~~~~ 226 (380)
..+.+||+.+.+
T Consensus 160 ~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TSCBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCe
Confidence 468889987764
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.74 E-value=7.2 Score=33.30 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=37.9
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-------ecCceEEEEeecC
Q psy6984 193 TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-------HNDIITALCFSPN 245 (380)
Q Consensus 193 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~i~~~~~~~~ 245 (380)
-...+.++|.|+|+++++-...|.|++++...++...... .......++++|+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 3467899999999988887768999999876555322111 1344678899886
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.70 E-value=7.1 Score=33.18 Aligned_cols=113 Identities=8% Similarity=0.065 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeccc-CCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEeCCCcceEEEeeCC---C
Q psy6984 77 NYALSGSWDKTLRLWDLAAGKTTRRFEDH-TKDVLSVAF--SV-DNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDG---H 148 (380)
Q Consensus 77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~--~~-~~~~~~s~-~~d~~v~iwd~~~~~~~~~~~~~---~ 148 (380)
..++.++.||.|+-.|..+|+.+.++... ..++....- .+ ++..++.. +.||.+..++...+......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999998887653 122222110 01 22333333 57888888886554322211100 1
Q ss_pred cCcEEEEEEccCC-------CCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984 149 SDWVSCVRFSPNH-------QNPIIVSAGWDRMVKVWNLTNCKLKINHS 190 (380)
Q Consensus 149 ~~~v~~~~~~~~~-------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 190 (380)
..++.. .-.|-- ....+++|+.++.+...|+++++....+.
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 111111 000000 12367889999999999999988776654
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.74 E-value=10 Score=32.12 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=115.3
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
+.+|.|.|+.+++...+..- .--+.-++|..+.+|--. ...++++|+..+.++..... .+.|.--.|-...
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~--~e~VvfWkWis~~--- 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLN--- 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--SSCEEEEEECSSS---
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec--CCccEEEEecCCC---
Confidence 34788999987654432211 112234588888777665 68899999988776654432 2345544554322
Q ss_pred EEEEEeCCCeEEEEeCCCc-eeeEeeeCC----ccceEEEEEcCCCCEEEEEcC-------CCcEEEEECCCCcEEEEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNC-KLKINHSGH----TGYLNTVTVSPDGSLCASGGK-------DMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~ 232 (380)
.|+-.. +..|..|++... .+...+..| ...|-.-..+++.++++..+- .|.+.+|..+.+.......
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 197 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 197 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee
Confidence 233322 568999999753 232233333 345667777899998765432 3778899887664322111
Q ss_pred ecCceEEEEeecCccc--ceeeeeeeeeccccceEEEEcCCc---------eeeeeeecc---ccceeEEEEeecCCEEE
Q psy6984 233 HNDIITALCFSPNRSF--QKIKLDISRTLQKSNLILYPINHG---------KMETPFFSL---FRDVLSVAFSVDNRQIV 298 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~v~~~~~s~~~~~l~ 298 (380)
|.+.-.. +-.++.. ..+-+-..+....+.+.+.++.+. +...-++.. ..-..++..|+....++
T Consensus 198 haa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 198 HAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp SEEEEEE--ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred eeeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 1111000 1111100 000000111112234455554322 011111111 11134677787777777
Q ss_pred EeeCCCcEEEEeccccee
Q psy6984 299 SSSRDKTIKLWNTLAHCK 316 (380)
Q Consensus 299 s~~~dg~v~iw~~~~~~~ 316 (380)
.-+.-|.|+++|+.++..
T Consensus 276 viTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 276 LITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEETTSEEEEEETTTCCE
T ss_pred EEeCCcEEEEEEcccCcE
Confidence 778899999998765543
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.68 E-value=11 Score=31.37 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceeeeecccCCCe--EEEEEeCCCCEEEEEeC------CCcEEEEeCCCcc
Q psy6984 75 DGNYALSGSWD-------KTLRLWDLAAGKTTRRFEDHTKDV--LSVAFSVDNRQIVSSSR------DKTIKLWNTLAHC 139 (380)
Q Consensus 75 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~ 139 (380)
+++.++.|+.+ ..+.+||..+++-... ..-..+. .+++. .++..++.|+. -..+.+||..+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56777777754 2578899877643321 1111111 11222 45666666653 2357888876543
Q ss_pred eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEc
Q psy6984 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~ 212 (380)
-...........-.+++.. + +.+++.|+.+ ..+.+||+.+.+-... .+........+. -++++++.|+
T Consensus 187 W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 261 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAIH-K--GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGG 261 (318)
T ss_dssp EEEECCCSSCCBSCEEEEE-T--TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred EEECCCCCCCcccceEEEE-C--CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECC
Confidence 2222111111111122222 1 2355555543 3467888876543221 111111112222 2466777776
Q ss_pred CC
Q psy6984 213 KD 214 (380)
Q Consensus 213 ~d 214 (380)
.+
T Consensus 262 ~~ 263 (318)
T 2woz_A 262 FA 263 (318)
T ss_dssp BC
T ss_pred ee
Confidence 54
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.66 E-value=28 Score=35.99 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=73.5
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
..+|.|.|+.++....+.. -.--+.-++|..+.+|--. ..+++|||+.++.++.... ....|.--.|-.. +..
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~-~~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTV 119 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC-Cee
Confidence 3478889988755432211 1111233578777666554 7889999987655443221 1223443444332 222
Q ss_pred EEEEEeCCCeEEEEeCCCce-eeEeeeCC----ccceEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCc
Q psy6984 165 IIVSAGWDRMVKVWNLTNCK-LKINHSGH----TGYLNTVTVSPDGSLCASGG-------KDMNAMLWDLNDGK 226 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~~-~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~ 226 (380)
-|+| +..|..|++.... +...+..| ...|-.-..+++.++++..| -.|.+.+|..+.+.
T Consensus 120 ~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 120 ALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred EEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 2333 4689999996422 21111112 34566667788899876433 34788888876543
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.13 E-value=13 Score=31.54 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=27.7
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC
Q psy6984 75 DGNYALSGSW-D---------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD 127 (380)
Q Consensus 75 ~~~~l~s~~~-d---------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d 127 (380)
+++.++.|+. + ..+.+||..+++-... .......-.++.. .++..++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5667777765 2 4688999887643221 1101111112222 567777778754
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.62 E-value=13 Score=30.98 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=62.5
Q ss_pred cEEEEECCCCceeee-ecccCCCeEEEEEeCCCCEEEEEeC----CC-------cEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984 87 TLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDNRQIVSSSR----DK-------TIKLWNTLAHCKFTIVEDGHSDWVSC 154 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~s~~~----d~-------~v~iwd~~~~~~~~~~~~~~~~~v~~ 154 (380)
.+..||..+++-... ...............++..++.|+. ++ .+..||..+..-...........-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 378999887764331 1111111122233456777777773 12 15667755432211110011111112
Q ss_pred EEEccCCCCCEEEEEeCC-------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC------CCcEEE
Q psy6984 155 VRFSPNHQNPIIVSAGWD-------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK------DMNAML 219 (380)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~i 219 (380)
++.. + +.+++.|+.+ ..+.+||+.+.+-... .+....... +. ..++++++.|+. -..+.+
T Consensus 105 ~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 105 LGEV-D--DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VI-SHNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp EEEE-T--TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EE-EETTEEEEECCEESSSCBCCCEEE
T ss_pred eEEE-C--CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EE-EECCEEEEEcCCCCCCCccceEEE
Confidence 2222 2 2255556543 3477888876543221 111111111 12 246677777764 245889
Q ss_pred EECCCCc
Q psy6984 220 WDLNDGK 226 (380)
Q Consensus 220 ~d~~~~~ 226 (380)
||+.+.+
T Consensus 180 yd~~~~~ 186 (318)
T 2woz_A 180 YNPKKGD 186 (318)
T ss_dssp EETTTTE
T ss_pred EcCCCCE
Confidence 9988765
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.43 E-value=5.9 Score=33.67 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC-CCCCEEEEE-eCCCeEEEEeCCCceeeEeeeC----C
Q psy6984 119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN-HQNPIIVSA-GWDRMVKVWNLTNCKLKINHSG----H 192 (380)
Q Consensus 119 ~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~----~ 192 (380)
..++.++.||.|.-.|..++............++-...-... .....++.. ..||.|..++..++........ .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 367788888888888876665554443221111111110000 011233333 5799999999887654433221 1
Q ss_pred ccceEE---EEE-c----CCCCEEEEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984 193 TGYLNT---VTV-S----PDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN 234 (380)
Q Consensus 193 ~~~i~~---~~~-~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 234 (380)
..++.. ..+ . ..+..+.+|+.++++...|..+|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111110 000 0 14567889999999999999999999888543
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.10 E-value=18 Score=32.18 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe--eCC-----CcCcEEEEEEccC---CCCCEEEEEeC-----
Q psy6984 107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV--EDG-----HSDWVSCVRFSPN---HQNPIIVSAGW----- 171 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~--~~~-----~~~~v~~~~~~~~---~~~~~l~s~~~----- 171 (380)
.....++|.|+|+.+++-...+.|++++...+...... ... .......++++|+ ... ++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEeccccCC
Confidence 45678999999987776655457888865333222211 111 1344668999985 222 3333221
Q ss_pred -------CCeEEEEeCCCc-------eeeEe-ee-CCccceEEEEEcCCCCEEEEEc
Q psy6984 172 -------DRMVKVWNLTNC-------KLKIN-HS-GHTGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 172 -------d~~v~iwd~~~~-------~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~ 212 (380)
...|.-+++... +.+.. .. ........++|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321 11111 22 1123468899999999877654
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.98 E-value=12 Score=34.21 Aligned_cols=114 Identities=17% Similarity=0.069 Sum_probs=67.2
Q ss_pred CCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcc-------------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 107 KDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHC-------------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 107 ~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
.....+.++|||++++.++ .+.++.++|..+-. .....+. .......+|.+++ ..+.|.-.|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--GlGPlHt~Fd~~G--~aYTtlfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--GLGPLHTTFDGRG--NAYTTLFID 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--CSCEEEEEECSSS--EEEEEETTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--CCcccEEEECCCC--ceEeeeeec
Confidence 3456788999999987654 67899999864210 0111111 1224567887765 345566789
Q ss_pred CeEEEEeCCCc----------eeeEeeeCCccceEEE------EEcCCCCEEEEEc---CCCcE----------EEEECC
Q psy6984 173 RMVKVWNLTNC----------KLKINHSGHTGYLNTV------TVSPDGSLCASGG---KDMNA----------MLWDLN 223 (380)
Q Consensus 173 ~~v~iwd~~~~----------~~~~~~~~~~~~i~~~------~~~~~~~~l~~~~---~d~~i----------~i~d~~ 223 (380)
.+|..|++... ..+....-|-.+ -.+ .-.|+|++|++.. .|+.+ .++|+.
T Consensus 399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIs 477 (638)
T 3sbq_A 399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDIS 477 (638)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECS
T ss_pred ceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecC
Confidence 99999998653 222222222211 111 1258999999874 45544 677774
Q ss_pred CC
Q psy6984 224 DG 225 (380)
Q Consensus 224 ~~ 225 (380)
..
T Consensus 478 Gd 479 (638)
T 3sbq_A 478 GD 479 (638)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.07 E-value=29 Score=32.85 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=73.6
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEEEe
Q psy6984 75 DGNYALSGSWDK------TLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFTIV 144 (380)
Q Consensus 75 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~~~ 144 (380)
+++.++.||.++ .+.+||..+++-... +.. ...-.+.+...++..++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677778877543 578899877532221 111 11112233324788888887654 6888887654322111
Q ss_pred eCC----CcCcEEEEEEccCCCCCEEEEEeC--C-----CeEEEEeCCCce------eeEeee--CCccceEEEEEcCCC
Q psy6984 145 EDG----HSDWVSCVRFSPNHQNPIIVSAGW--D-----RMVKVWNLTNCK------LKINHS--GHTGYLNTVTVSPDG 205 (380)
Q Consensus 145 ~~~----~~~~v~~~~~~~~~~~~~l~s~~~--d-----~~v~iwd~~~~~------~~~~~~--~~~~~i~~~~~~~~~ 205 (380)
..+ ......++.+..+. +.+++.||. + ..+..||+.+.. -..... .....-.++....++
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVS-KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR 608 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTT-TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred CCCCCCCcccceeEEEEeCCC-CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence 100 01111223444321 235556655 2 458889987765 111111 011111122233336
Q ss_pred CEEEEEcCC--------CcEEEEECCCCc
Q psy6984 206 SLCASGGKD--------MNAMLWDLNDGK 226 (380)
Q Consensus 206 ~~l~~~~~d--------~~i~i~d~~~~~ 226 (380)
++++.|+.+ ..+.+||+.+.+
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 777777743 457777776653
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=83.56 E-value=23 Score=31.33 Aligned_cols=197 Identities=11% Similarity=0.104 Sum_probs=113.2
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC----cceEEEEEccCCCEEEEEe-------CCC
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS----HFISDIVLSSDGNYALSGS-------WDK 86 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~-------~d~ 86 (380)
.|..=.|-. ++.|+-.. +..|.-|++..+. .|.+.+..|. .-|.....+++.++++..+ -.|
T Consensus 107 ~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 107 DVTFWKWIS--LNTVALVT-DNAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred CceEEEecC--CCeEEEEc-CCeeEEecccCCC----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 444444443 23455444 3588888876422 2333344443 2366667788999877443 246
Q ss_pred cEEEEECCCCceeeeecccCCCeEEEEEeCCC---CEEEEEeCC---CcEEEEeCCCc--------ceEEEee---CCCc
Q psy6984 87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN---RQIVSSSRD---KTIKLWNTLAH--------CKFTIVE---DGHS 149 (380)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~s~~~d---~~v~iwd~~~~--------~~~~~~~---~~~~ 149 (380)
.+.+|..+. +..+.+++|.+....+.+..+. ..++-+.+. +.+.+-++... .+...+. +...
T Consensus 180 ~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 180 AMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp EEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred eEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence 788999764 4556678887666555443211 234444443 67777776322 0111111 1223
Q ss_pred CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224 (380)
Q Consensus 150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 224 (380)
+.--++.+++. ..+++.-..-|.|.+||+.++......+-....|...+.+....-++.-...|.|.-..+..
T Consensus 259 DFPvamqvs~k--ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 259 DFPVAMQISEK--HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CCEEEEEEETT--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CceeEEEeccc--CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 44445666664 44677777889999999999988766554555666666555555555555666665554443
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=83.39 E-value=24 Score=31.28 Aligned_cols=222 Identities=12% Similarity=0.067 Sum_probs=114.5
Q ss_pred CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984 85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164 (380)
Q Consensus 85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (380)
+.+|.|.|+.++....+..- .--+.-++|..+.+|--. ..++++||+..+.++..... .+.|.--.|-...
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis~~--- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLN--- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEETT---
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecCCC---
Confidence 34788999987554422111 112334678777776655 78999999988766554332 2223333443321
Q ss_pred EEEEEeCCCeEEEEeCCCc-eeeEeeeCC----ccceEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCcEEEEEE
Q psy6984 165 IIVSAGWDRMVKVWNLTNC-KLKINHSGH----TGYLNTVTVSPDGSLCASGG-------KDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 165 ~l~s~~~d~~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~ 232 (380)
.|+-.+ +..|..|++... .+...+..| ...|-.-..+++.++++..+ -.|.+.+|..+.+.....-.
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 196 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence 233222 568999999653 222233333 34577777889999876543 24778899887664332211
Q ss_pred ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc---------eeeeeeecc---ccceeEEEEeecCCEEEEe
Q psy6984 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG---------KMETPFFSL---FRDVLSVAFSVDNRQIVSS 300 (380)
Q Consensus 233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~v~~~~~s~~~~~l~s~ 300 (380)
|...-..+.+.-+.....+-+-..+....+.+.+.++.+. +...-++.. ..-..++..|+....++.-
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 1111111110000000000000111112244555555332 001111111 1113467788888888888
Q ss_pred eCCCcEEEEeccccee
Q psy6984 301 SRDKTIKLWNTLAHCK 316 (380)
Q Consensus 301 ~~dg~v~iw~~~~~~~ 316 (380)
+.-|.|+++|+.++..
T Consensus 277 TK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTC 292 (494)
T ss_dssp ETTSEEEEEETTTCCE
T ss_pred ecCceEEEEeccccee
Confidence 8899999998765543
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.43 E-value=40 Score=31.91 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=77.6
Q ss_pred cCCCEEEEEeCC----CcEEEEECCCCceeeee-c------ccCCCeEEEEEeC-CCCEEEEEeCCC------cEEEEeC
Q psy6984 74 SDGNYALSGSWD----KTLRLWDLAAGKTTRRF-E------DHTKDVLSVAFSV-DNRQIVSSSRDK------TIKLWNT 135 (380)
Q Consensus 74 ~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~------~h~~~v~~~~~~~-~~~~~~s~~~d~------~v~iwd~ 135 (380)
.++..++.||.+ ..+.+||..+++-...- . .....-.+++..+ ++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777778754 46888998776433322 1 1111112333333 677777776442 4667776
Q ss_pred CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEee-----eCCccceEEEEEcCC-CCE
Q psy6984 136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINH-----SGHTGYLNTVTVSPD-GSL 207 (380)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~ 207 (380)
.+..-...........-.+.+...+ +.+++.||.++ .+.+||..+..-.... +.......++.+..+ +++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 5432211110011111112232222 23666676554 6889998875432211 111122233555655 677
Q ss_pred EEEEcCC-------CcEEEEECCCCc
Q psy6984 208 CASGGKD-------MNAMLWDLNDGK 226 (380)
Q Consensus 208 l~~~~~d-------~~i~i~d~~~~~ 226 (380)
++.|+.+ ..+..||+.+.+
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 7888762 458889988776
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.99 E-value=12 Score=37.00 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=31.5
Q ss_pred ceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
.+.+++..++..++++-+.|+++|+|++.++..+...|+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 456777788889999999999999999888766655544
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.97 E-value=35 Score=30.41 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=33.5
Q ss_pred eEEEEEccCCC-EEEEEeCCCcEEEEECCCCc---eeeeec-----c----cCCCeEEEEEeCC
Q psy6984 67 ISDIVLSSDGN-YALSGSWDKTLRLWDLAAGK---TTRRFE-----D----HTKDVLSVAFSVD 117 (380)
Q Consensus 67 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~---~~~~~~-----~----h~~~v~~~~~~~~ 117 (380)
-..++|.|||+ .|+++...|.|++++..... .+..+. + .......|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 46889999996 56666788999999754321 111111 0 1345789999996
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=77.22 E-value=30 Score=28.71 Aligned_cols=113 Identities=5% Similarity=0.028 Sum_probs=54.6
Q ss_pred CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc--C--CCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984 173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG--K--DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF 248 (380)
Q Consensus 173 ~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~ 248 (380)
..|+..++...+....... . +..++++++.|+-.. . ...|+..++.... ...+... .+ ..+++++..
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~-~~--~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNH-YL--FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESS-CC--CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCC-Cc--eEeeEECCE
Confidence 4677777766543322211 1 235677888777654 3 3455555665333 2223222 11 334554433
Q ss_pred ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984 249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 303 (380)
.... ......+...++..+.... +.. ... ...++|++++|+-...+
T Consensus 159 iy~t-----~~g~~~Iy~~~l~g~~~~~-l~~--~~~-~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 159 FYYN-----NPKNGQLYRYDTASQSEAL-FYD--CNC-YKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EEEE-----CTTTCCEEEEETTTTEEEE-EEC--SCE-EEEEEEETTEEEEEEGG
T ss_pred EEEE-----eCCCceEEEEECCCCCEEE-EeC--CCc-cceeeecCCEEEEEEcC
Confidence 2111 1134566666665554332 222 111 23466899988866543
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.29 E-value=37 Score=29.24 Aligned_cols=153 Identities=11% Similarity=0.116 Sum_probs=72.7
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCC----eEEEeecCCCCCCcccccc--cccC--------CCcceEEEEEcc-C-CCEE
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDN----TLIIWKLTRDDTNYGVPQK--RLKG--------HSHFISDIVLSS-D-GNYA 79 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg----~v~vw~~~~~~~~~~~~~~--~~~~--------h~~~v~~~~~~~-~-~~~l 79 (380)
...|.+|...|..+..+..+...| .|... ............ .+.. ....|.++++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 356999999984445555565555 33332 211111111100 0111 123577888886 2 4556
Q ss_pred EEEeCCCcEEEEECCCCceeeeecc-------------------cCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcc
Q psy6984 80 LSGSWDKTLRLWDLAAGKTTRRFED-------------------HTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHC 139 (380)
Q Consensus 80 ~s~~~d~~i~vwd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~ 139 (380)
..+...+.|...+ ..++.-..+.. ....+.+|.++|. ...+..+..++.+...+- .+.
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~ 209 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT 209 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCC
Confidence 6666666665543 22333222211 1235788999873 344555544443433321 122
Q ss_pred eEEEeeCC----C--------cCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984 140 KFTIVEDG----H--------SDWVSCVRFSPNHQNPIIVSAGWDR 173 (380)
Q Consensus 140 ~~~~~~~~----~--------~~~v~~~~~~~~~~~~~l~s~~~d~ 173 (380)
........ + ...+.++.+.|.... .++.+...+
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~-~l~vg~~~g 254 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD-ILYQQNHCG 254 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT-EEEEEETTE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCC-EEEEEcCCe
Confidence 22222110 0 124888999886433 455555444
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=72.94 E-value=42 Score=28.29 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=20.6
Q ss_pred CeEEEEeCCCceeeEee--e-CCccceEEEEEcCCCCEEEEEcCC
Q psy6984 173 RMVKVWNLTNCKLKINH--S-GHTGYLNTVTVSPDGSLCASGGKD 214 (380)
Q Consensus 173 ~~v~iwd~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~d 214 (380)
..+.+||+.+.+-.... . ........+ . .++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~-~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTF-V-HNGKAYVTGGVN 128 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEE-E-ETTEEEEEECCC
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEE-E-ECCEEEEEeCcC
Confidence 35788888775432211 1 111111222 2 567788888865
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=71.38 E-value=72 Score=30.37 Aligned_cols=267 Identities=12% Similarity=0.083 Sum_probs=134.7
Q ss_pred ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984 16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 95 (380)
+..|++|.-..+ + +|--|..+|- ..||-..-. .+.. .. ......|.++....+| .|-.|..+| +..||..+
T Consensus 21 ~n~V~~I~qD~~-G-~lWigT~~GL-~ryDG~~~~-~~~~-~~--~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSE-G-LIWIGSNKGL-FSYDGYSTQ-QHFT-YG--ENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTT-S-CEEEEESSCE-EEECSSCEE-ECSC-TT--STTSSCEEEEEEETTT-EEEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCC-C-CEEEEECCCc-cccCCCceE-EEEc-cC--CCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCC
Confidence 467999987765 3 4445566774 445521100 0100 00 1123468888777766 555666554 88999877
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee---CCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPNHQNPIIVSAGWD 172 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~d 172 (380)
.+...........|.++.. .++ .+..++.+ -+..+|..+........ ......|.++....++. |..+..+
T Consensus 92 ~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~ 165 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN 165 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC---EEEEETT
T ss_pred CEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCC
Confidence 6543311112234666654 345 45556665 57778865433222200 11234577777665432 3345544
Q ss_pred CeEEEEeCCCceeeEee-eCC----ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCc
Q psy6984 173 RMVKVWNLTNCKLKINH-SGH----TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNR 246 (380)
Q Consensus 173 ~~v~iwd~~~~~~~~~~-~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~ 246 (380)
-+..++..+.+..... ... ...|.++..++++..|..|.. +-+..+|..+++..... .....|.++....++
T Consensus 166 -Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 243 (758)
T 3ott_A 166 -GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG 243 (758)
T ss_dssp -EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC
T ss_pred -CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC
Confidence 5777887765543211 111 224788888887775555554 46888898766532211 112335555544433
Q ss_pred ccceeeeeeeeeccccceEEEEcCCceeeeeee------c-cccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984 247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFF------S-LFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 309 (380)
..- ... ...+..++...++...-.. . ....|.++....+|..-+. +..| +.+.
T Consensus 244 ~lW-------igT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG-T~~G-l~~~ 303 (758)
T 3ott_A 244 DLL-------AGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG-TDYG-ISLS 303 (758)
T ss_dssp CEE-------EEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE-ESSS-EEEE
T ss_pred CEE-------EEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE-eCCc-cccc
Confidence 221 111 1345555544433221100 0 1134777776666765543 3445 4333
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=70.76 E-value=44 Score=27.68 Aligned_cols=141 Identities=9% Similarity=-0.006 Sum_probs=76.9
Q ss_pred EEEccCCCEEEEEeC--------------CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe--CCCcEEEE
Q psy6984 70 IVLSSDGNYALSGSW--------------DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLW 133 (380)
Q Consensus 70 ~~~~~~~~~l~s~~~--------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~v~iw 133 (380)
--++++|++|+-... ...|+..++..++... +... . +..|+++++.++-.. .++.-.||
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 345788988876643 2468888887665333 2211 1 236778888888665 34444455
Q ss_pred --eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984 134 --NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 134 --d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
++.......+.. ... ..++|.++. ++.+......|...++..........+ ... ..+.|++.+|+-.
T Consensus 133 ~~~~dGs~~~~lt~-~~~-----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 133 RIRIDGEEKKKIKN-HYL-----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp EEETTSCCCEEEES-SCC-----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEE
T ss_pred EEECCCCCeEEEeC-CCc-----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEE
Confidence 444333322222 111 345565553 444544467888888876554433332 222 2356888877654
Q ss_pred cCC--CcEEEEECCCCc
Q psy6984 212 GKD--MNAMLWDLNDGK 226 (380)
Q Consensus 212 ~~d--~~i~i~d~~~~~ 226 (380)
... ..|..-++....
T Consensus 202 ~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EGGGTTEEEEECSSSCC
T ss_pred EcCCCcEEEEEECCCCC
Confidence 433 356666665443
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.98 E-value=34 Score=31.59 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=41.0
Q ss_pred EEEEEccCCCEEEEEeCC------------CcEEEEECCCCceeeeeccc-CCCeEEEEEeCCCCEEEEE
Q psy6984 68 SDIVLSSDGNYALSGSWD------------KTLRLWDLAAGKTTRRFEDH-TKDVLSVAFSVDNRQIVSS 124 (380)
Q Consensus 68 ~~~~~~~~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~ 124 (380)
--|.|++.|++++.-..+ ..+.+.+..+++..+-+... ..+++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 358899999977765432 24666677777777666554 3579999999999887654
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.62 E-value=14 Score=36.61 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 102 (380)
.+.+++..++..++++-+.|+.+|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777888899999999999999999999877654
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=60.27 E-value=93 Score=27.67 Aligned_cols=111 Identities=5% Similarity=-0.009 Sum_probs=58.8
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--C-ccccccccc----CCCcceEEEEEccC----CCEEEEEeCC-
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--N-YGVPQKRLK----GHSHFISDIVLSSD----GNYALSGSWD- 85 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--~-~~~~~~~~~----~h~~~v~~~~~~~~----~~~l~s~~~d- 85 (380)
.-..|++.|+....|+.+...|.|++++...... . ..++..... ........++++|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 4457889988422566677889999996432210 0 111111111 12456789999986 4433433321
Q ss_pred -----------CcEEEEECCCC----------ceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCC
Q psy6984 86 -----------KTLRLWDLAAG----------KTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDK 128 (380)
Q Consensus 86 -----------~~i~vwd~~~~----------~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~ 128 (380)
..|.-|.+..+ +.+..+. .....-..|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 13444555421 1222221 1112356899999998777665543
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.66 E-value=84 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=26.7
Q ss_pred eecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984 291 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL 322 (380)
Q Consensus 291 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 322 (380)
..+..++++-+.|.++|+|++.++..+...+.
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44688999999999999999988876666665
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.26 E-value=67 Score=29.51 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=42.9
Q ss_pred ceEEEEEccCCCEEEEEeC------------CCcEEEEECCCCceeeeeccc-CCCeEEEEEeCCCCEEEEEe
Q psy6984 66 FISDIVLSSDGNYALSGSW------------DKTLRLWDLAAGKTTRRFEDH-TKDVLSVAFSVDNRQIVSSS 125 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~------------d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~ 125 (380)
....|.|.++|.+.++... ...|..++..+++....+... ..+++.++|+||++.|..+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567999999988774332 125777777778776655432 35689999999999887663
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.50 E-value=15 Score=37.27 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=30.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 102 (380)
.+.+++..++..++++-+.|+.+|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455666778899999999999999999999887664
No 357
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=47.79 E-value=1.9e+02 Score=27.45 Aligned_cols=271 Identities=9% Similarity=0.051 Sum_probs=130.1
Q ss_pred cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984 17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95 (380)
Q Consensus 17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 95 (380)
..|.+|....+ +.+.+ +...| +..++....... +..+.. .......|.++...+++..|-.|.. +-+..+|..+
T Consensus 146 ~~i~~i~~d~~-g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKD-NQIYV-GTYNG-LCRYIPSNGKFEGIPLPVH-SSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTT-CCEEE-EETTE-EEEEETTTTEEEEECCCCC-TTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCC-CCEEE-EeCCC-HhhCccCCCceEEecCCCc-cccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 35777766654 33433 44444 555654322110 000100 0011234788888777765555553 4688899877
Q ss_pred CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC------CCcCcEEEEEEccCCCCCEEEEE
Q psy6984 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED------GHSDWVSCVRFSPNHQNPIIVSA 169 (380)
Q Consensus 96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~ 169 (380)
++...........|.++....+|...+. +.+ -+.+++..+......... -....|.++.....+. |-.|
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~---lWiG 295 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN---IWLG 295 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC---EEEE
T ss_pred CeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC---EEEE
Confidence 6543221112345788888877776554 444 477787554332222111 1224588877665432 4445
Q ss_pred eCCCeEEEEeCCCceeeEee-e-----CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEEe--------
Q psy6984 170 GWDRMVKVWNLTNCKLKINH-S-----GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK--HLHTLVH-------- 233 (380)
Q Consensus 170 ~~d~~v~iwd~~~~~~~~~~-~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~-------- 233 (380)
...| +.++.... ...... . .....|.++..+++|.+.+. +.+ -+..++..+++ ....+..
T Consensus 296 T~~G-l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (758)
T 3ott_A 296 TDYG-ISLSRYNS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-GLIRFTDPAGERHDAIWYRMGDKTYPLS 371 (758)
T ss_dssp ESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-EEEEESCTTSSCCCCEEECTTCSSSCCS
T ss_pred eCCc-ccccccCC-ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-cceeecccccccceeEEeccCCcCCCCC
Confidence 5556 54443322 111110 0 11235888888888876543 444 46666655432 1111111
Q ss_pred cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-c-----cccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-S-----LFRDVLSVAFSVDNRQIVSSSRDKTIK 307 (380)
Q Consensus 234 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~l~s~~~dg~v~ 307 (380)
...|.++.-..++.. .... ...+..++..+++...-.. . ....|.++...++|+..+ |+.++-+.
T Consensus 372 ~~~v~~i~~d~~g~l-------Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~ 442 (758)
T 3ott_A 372 HNRIRHIYEDKEQQL-------WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIF 442 (758)
T ss_dssp CSCEEEEEECTTSCE-------EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEE
T ss_pred CCceEEEEECCCCCE-------EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceE
Confidence 122444443333321 1111 2356666665554432111 1 123466776666666554 45444455
Q ss_pred EEe
Q psy6984 308 LWN 310 (380)
Q Consensus 308 iw~ 310 (380)
.++
T Consensus 443 ~~~ 445 (758)
T 3ott_A 443 VVD 445 (758)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.08 E-value=34 Score=32.34 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=28.1
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy6984 67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 103 (380)
Q Consensus 67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 103 (380)
|.++.+ +..++++-+.|+.+|+|++.+++++....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 554444 47799999999999999999998776653
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=43.12 E-value=1.3e+02 Score=24.38 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=81.4
Q ss_pred ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984 18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK 97 (380)
Q Consensus 18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 97 (380)
.|..|+.-.. ..++. . ||.|..|-..... +..+|... ...|..++...+ +.+.-. ||.|+.|-....-
T Consensus 64 ~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~G-qlg~P~~~----~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~g 131 (282)
T 3qhy_B 64 GVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDG-QTTVPAEA----RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDG 131 (282)
T ss_dssp CCCEEEECSS--EEEEE-E-TTEEEEEECCTTS-TTCCCGGG----SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTS
T ss_pred CEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCC-CCCCCccc----CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCC
Confidence 4556665432 23333 3 7888888643321 12222211 124666655433 333334 8888888765422
Q ss_pred eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984 98 TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177 (380)
Q Consensus 98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 177 (380)
.+..-......|..++...+. .+.-. |+.+..|-......+.. .......|..++.-... .++. .|+.|..
T Consensus 132 qlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h---s~al--~~G~v~~ 202 (282)
T 3qhy_B 132 QTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGIFH---SLAL--KDGKVIA 202 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE---EEEE--ETTEEEE
T ss_pred cCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCC-ceecCCCeEEEEecCCE---EEEE--ECCeEEE
Confidence 111111123456666654332 22223 68888886432111100 00112346666554321 2333 4888988
Q ss_pred EeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222 (380)
Q Consensus 178 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 222 (380)
|-.......-........|..++.... ..++.. |+.++.|=.
T Consensus 203 wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 203 WGDNRYKQTTVPTEALSGVSAIASGEW-YSLALK--NGKVIAWGS 244 (282)
T ss_dssp EECCTTSTTCCCGGGGSSCCEEEECSS-CEEEEE--TTEEEEEST
T ss_pred EECCCCCCCCCCcccCCCceEEEcCCC-EEEEEE--CCEEEEecC
Confidence 876542111000001123444443322 222222 777777743
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=40.65 E-value=1.7e+02 Score=24.92 Aligned_cols=145 Identities=10% Similarity=0.006 Sum_probs=69.0
Q ss_pred ceEEEEeCCCC-CCeEEEeeCCCeEEEeecCCCCCCcccccccc----------------cCCCcceEEEEEccC-CCEE
Q psy6984 18 WVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL----------------KGHSHFISDIVLSSD-GNYA 79 (380)
Q Consensus 18 ~v~~i~~~~~~-~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~----------------~~h~~~v~~~~~~~~-~~~l 79 (380)
.|.+|++.|.. +..+..+...+.|...+ ......... ... ......+.++.+.|. .+.|
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~~-~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l 192 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEPV-AGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHL 192 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEEC-HHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEEC-cCccCCccccccccccccCCCCCCceeEEEECCCCCCEE
Confidence 57788888743 45666665555544332 211111111 000 012235788999873 4455
Q ss_pred EEEeCCCcEEEEECCCCceeeeecc-----c--------CCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 80 LSGSWDKTLRLWDLAAGKTTRRFED-----H--------TKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 80 ~s~~~d~~i~vwd~~~~~~~~~~~~-----h--------~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
..+..++.|...+ ..++.-..+.. + ...+.++.++|+ ...+..+...+ |...+. .......+.
T Consensus 193 ~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~ 269 (394)
T 3b7f_A 193 YIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIG 269 (394)
T ss_dssp EEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGG
T ss_pred EEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECC
Confidence 5555445454432 22333222211 0 124888999885 35666666555 333321 122222221
Q ss_pred C-CCc---CcEEEEEEccCCCCCEEEE
Q psy6984 146 D-GHS---DWVSCVRFSPNHQNPIIVS 168 (380)
Q Consensus 146 ~-~~~---~~v~~~~~~~~~~~~~l~s 168 (380)
. ... ..+.++.+.|.....+++.
T Consensus 270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 270 DAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp GGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCCCCccceEEEEECCCCCCEEEEE
Confidence 1 111 3456788877544444443
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.20 E-value=29 Score=35.15 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984 196 LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232 (380)
Q Consensus 196 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 232 (380)
+.+++..++..++++-+.|+++++|++.+++.+.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455567788899999999999999999999887653
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.97 E-value=1.6e+02 Score=23.87 Aligned_cols=143 Identities=10% Similarity=0.012 Sum_probs=68.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984 66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE 145 (380)
Q Consensus 66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~ 145 (380)
.|..++.... +.+.-. ||.|+.|-....-.+..-......|..++.......++ . |+.+..|-......+.. .
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~-P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV-P 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC-C
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC-C
Confidence 4666665433 333335 89999997654222111011223577777654333333 4 89999996432211100 0
Q ss_pred CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN 223 (380)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 223 (380)
..-...|..++.... ..+.-. |+.|..|-.......-........|..++.... ..+.-. |+.++.|-..
T Consensus 98 ~~~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp GGGSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred cccCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 001234666666543 233334 899999976542211000011234554443222 222223 6888888543
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=24.85 E-value=3.3e+02 Score=23.38 Aligned_cols=169 Identities=11% Similarity=0.223 Sum_probs=84.5
Q ss_pred eEEEeecCCC--CCCc--ccccccccCCCcceEEEEEc---cC----CCEEEEEe-CCCcEEEEECCCCceeeeeccc--
Q psy6984 40 TLIIWKLTRD--DTNY--GVPQKRLKGHSHFISDIVLS---SD----GNYALSGS-WDKTLRLWDLAAGKTTRRFEDH-- 105 (380)
Q Consensus 40 ~v~vw~~~~~--~~~~--~~~~~~~~~h~~~v~~~~~~---~~----~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h-- 105 (380)
+|.+||+..+ .... .++..... ....+..+.+. |+ +.++.... ....|.|+|+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 5677777765 3322 22222222 23567888877 22 34555444 4678999999998776654210
Q ss_pred ----------------CCCeEEEEEeCC----CCEEEEEeCCCcEEEEeC-----CC---cceEEEe-eCCCcCcEEEEE
Q psy6984 106 ----------------TKDVLSVAFSVD----NRQIVSSSRDKTIKLWNT-----LA---HCKFTIV-EDGHSDWVSCVR 156 (380)
Q Consensus 106 ----------------~~~v~~~~~~~~----~~~~~s~~~d~~v~iwd~-----~~---~~~~~~~-~~~~~~~v~~~~ 156 (380)
...+..++++|+ ++.|.-..-.+ -++|.+ +. ......+ ..+....-...+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 125677888887 56555443332 122321 11 1111111 111111122344
Q ss_pred EccCCCCCEEEEEeCCCeEEEEeCCC-c----eeeE-eeeCCccceEEEEEcCCCCEEEEE
Q psy6984 157 FSPNHQNPIIVSAGWDRMVKVWNLTN-C----KLKI-NHSGHTGYLNTVTVSPDGSLCASG 211 (380)
Q Consensus 157 ~~~~~~~~~l~s~~~d~~v~iwd~~~-~----~~~~-~~~~~~~~i~~~~~~~~~~~l~~~ 211 (380)
+.+. ++.++++--....|..|+..+ . .... .....-..+..+.+.++|.+.+..
T Consensus 282 ~D~~-~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPK-TKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTT-TCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCC-CCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 4322 233566666778899999875 1 1111 111223356666666665544444
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=22.06 E-value=4.7e+02 Score=24.10 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=37.7
Q ss_pred cEEEEEEccCCCCCEEE-EEeC-----------CCeEEEEeCCCceeeEeeeCC-ccceEEEEEcCCCCEEEEEc
Q psy6984 151 WVSCVRFSPNHQNPIIV-SAGW-----------DRMVKVWNLTNCKLKINHSGH-TGYLNTVTVSPDGSLCASGG 212 (380)
Q Consensus 151 ~v~~~~~~~~~~~~~l~-s~~~-----------d~~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 212 (380)
....|.|.+++. +.+ +=.. ...+..++..++++.....+. ...++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~--LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCC--EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCC--EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 355688888653 444 3111 125666676666665544433 35689999999999887653
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.32 E-value=3.8e+02 Score=24.74 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=32.2
Q ss_pred eEEEEEeCCCCEEEEEeCC------------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984 109 VLSVAFSVDNRQIVSSSRD------------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162 (380)
Q Consensus 109 v~~~~~~~~~~~~~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (380)
.-.|+|+|.|.+++....+ ..+.+.+...+....+........++.++|+|+++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~ 543 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCC
Confidence 4568999999976654432 12333344444444444444455688888888754
Done!