RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6984
(380 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 258 bits (661), Expect = 2e-84
Identities = 125/366 (34%), Positives = 168/366 (45%), Gaps = 78/366 (21%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
LR TL GH G VT +A +P + + S D T+ +W D G + LKGH+ +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVW-----DLETGELLRTLKGHTGPV 54
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
D+ S+DG Y SGS DKT+RLWDL G+ R HT V SVAFS D R + SSSRD
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 128 KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI 187
KTIK+W+ + K GH+DWV+ V FSP+ + S+ D +K+W+L K
Sbjct: 115 KTIKVWD-VETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVA 171
Query: 188 NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNR 246
+GHTG +N+V SPDG S D LWDL+ GK L TL H + + ++ FSP+
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231
Query: 247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI 306
+ S S D TI
Sbjct: 232 YL------------------------------------------------LASGSEDGTI 243
Query: 307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN 366
++W DL T + V+ L SLAWS DG+ L +G +D
Sbjct: 244 RVW-----------DLRTGECVQTL---------SGHTNSVTSLAWSPDGKRLASGSADG 283
Query: 367 TIRVWQ 372
TIR+W
Sbjct: 284 TIRIWD 289
Score = 165 bits (419), Expect = 2e-48
Identities = 79/221 (35%), Positives = 115/221 (52%), Gaps = 11/221 (4%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
ET + TL GH +V+ +A +P + S SRD T+ +W D G L+
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVW-----DVETGKCLTTLR 132
Query: 62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
GH+ +++ + S DG + S S D T++LWDL GK HT +V SVAFS D ++
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL 192
Query: 122 VSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
+SSS D TIKLW+ C T+ GH + V+ V FSP+ ++ S D ++VW+L
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGY--LLASGSEDGTIRVWDL 248
Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
+ SGHT + ++ SPDG ASG D +WD
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 134 bits (339), Expect = 1e-36
Identities = 80/279 (28%), Positives = 115/279 (41%), Gaps = 76/279 (27%)
Query: 99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS 158
R + HT V VAFS D + + + S D TIK+W+ L + GH+ V V S
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVAAS 60
Query: 159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM 218
+ + S D+ +++W+L + +GHT Y+++V SPDG + +S +D
Sbjct: 61 ADGTY--LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 219 LWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
+WD+ GK L TL H D
Sbjct: 119 VWDVETGKCLTTLRGHTD------------------------------------------ 136
Query: 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP--DV 335
V SVAFS D + SSS+D TIKLW DL T K V L
Sbjct: 137 ------WVNSVAFSPDGTFVASSSQDGTIKLW-----------DLRTGKCVATLTGHTGE 179
Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
V+ S+A+S DG+ L + SD TI++W +S
Sbjct: 180 VN-----------SVAFSPDGEKLLSSSSDGTIKLWDLS 207
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 133 bits (335), Expect = 6e-35
Identities = 116/378 (30%), Positives = 171/378 (45%), Gaps = 41/378 (10%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSC--SRDNTLIIWKLTRDDTNYGVPQKR 59
++ H+ V+++A + ++IL S D T+ +W L+ G +
Sbjct: 95 DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS----TPGKLIRT 150
Query: 60 LKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
L+GHS ++ + S DG SGS D T++LWDL GK HT V S+AFS D
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 119 R-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
I S S D TI+LW+ GHSD V FSP+ ++ S D +++
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPD--GSLLASGSSDGTIRL 267
Query: 178 WNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---H 233
W+L + + SGH+ + +V SPDG L ASG D LWDL GK L +L H
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327
Query: 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD 293
+++L FSP+ S T++ +L +VLSV+FS D
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK------TLEGHSNVLSVSFSPD 381
Query: 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS 353
R + S S D T++LW+ +D T + SL +S
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--------------------VTSLDFS 421
Query: 354 TDGQTLFAGYSDNTIRVW 371
DG++L +G SDNTIR+W
Sbjct: 422 PDGKSLASGSSDNTIRLW 439
Score = 132 bits (332), Expect = 2e-34
Identities = 102/314 (32%), Positives = 150/314 (47%), Gaps = 19/314 (6%)
Query: 2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
+ +L TL GH+ VT +A +P S D T+ +W D G P L
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW-----DLRTGKPLSTLA 195
Query: 62 GHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNR 119
GH+ +S + S DG SGS D T+RLWDL+ GK R H+ V+S +FS D
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGS 254
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
+ S S D TI+LW+ + GHS V V FSP+ + ++ S D V++W+
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK--LLASGSSDGTVRLWD 312
Query: 180 LTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVHNDI 236
L + GH G +++++ SPDGSL SGG D LWDL GK L TL +
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
Query: 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
+ ++ FSP+ +S + L+ ++ G + V S+ FS D +
Sbjct: 373 VLSVSFSPDGRV------VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426
Query: 297 IVSSSRDKTIKLWN 310
+ S S D TI+LW+
Sbjct: 427 LASGSSDNTIRLWD 440
Score = 113 bits (283), Expect = 8e-28
Identities = 112/377 (29%), Positives = 171/377 (45%), Gaps = 39/377 (10%)
Query: 9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
L GH +T IA +P +LS S D T+ +W L + + ++
Sbjct: 58 SLLLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 69 DIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR- 126
+ S S D T++LWDL+ GK R E H++ V S+AFS D + + S S
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
D TIKLW+ K GH+D VS + FSP+ +I S D +++W+L+ KL
Sbjct: 177 DGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLL 234
Query: 187 INH-SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--HNDIITALCFS 243
+ SGH+ + + SPDGSL ASG D LWDL L + H+ + ++ FS
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293
Query: 244 PNRSFQKIKLDISRTLQKSNLILYPINHGK--METPFFSLFRDVLSVAFSVDNRQIVSS- 300
P+ ++ + L+ + GK V S++FS D +VS
Sbjct: 294 PDGKL------LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347
Query: 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF 360
S D TI+LW DL T K ++ L LS+++S DG+ +
Sbjct: 348 SDDGTIRLW-----------DLRTGKPLKTLEGHS----------NVLSVSFSPDGRVVS 386
Query: 361 AGYSDNTIRVWQVSVTS 377
+G +D T+R+W +S S
Sbjct: 387 SGSTDGTVRLWDLSTGS 403
Score = 108 bits (269), Expect = 5e-26
Identities = 88/328 (26%), Positives = 137/328 (41%), Gaps = 29/328 (8%)
Query: 52 NYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
N K+ + S +LS + + ++ H + S
Sbjct: 11 NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70
Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-HSDWVSCVRF-SPNHQNPIIVSA 169
+AFS D ++S S D TIKLW+ K +G H VS + SP+ + ++ S+
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 170 GWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKH 227
D VK+W+L+ I GH+ + ++ SPDG L ASG D LWDL GK
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 228 LHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL 286
L TL H D +++L FSP+ T++ L+ ++ GK+ S D +
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR-----LWDLSTGKLLRSTLSGHSDSV 245
Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
+FS D + S S D TI+LW+ + V
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL----------------- 288
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
S+A+S DG+ L +G SD T+R+W +
Sbjct: 289 --SVAFSPDGKLLASGSSDGTVRLWDLE 314
Score = 90.9 bits (224), Expect = 4e-20
Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 13/223 (5%)
Query: 8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
LR TL+GH+ V +++ + S S D T+ +W L + L GHS +
Sbjct: 234 LRSTLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSS----SSLLRTLSGHSSSV 287
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKT--TRRFEDHTKDVLSVAFSVDNRQIVSS- 124
+ S DG SGS D T+RLWDL GK + + H V S++FS D +VS
Sbjct: 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347
Query: 125 SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK 184
S D TI+LW+ + V V FSP+ + ++ S D V++W+L+
Sbjct: 348 SDDGTIRLWDL--RTGKPLKTLEGHSNVLSVSFSPDGR--VVSSGSTDGTVRLWDLSTGS 403
Query: 185 LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
L N GHT + ++ SPDG ASG D LWDL
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
Score = 81.7 bits (200), Expect = 6e-17
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
TL+GH+ V +A +P + S S D T+ +W L +T + LKGH +S +
Sbjct: 279 TLSGHSSSVLSVAFSPD-GKLLASGSSDGTVRLWDL---ETGKLLSSLTLKGHEGPVSSL 334
Query: 71 VLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
S DG+ GS D T+RLWDL GK + E H+ +VLSV+FS D R + S S D T
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGT 393
Query: 130 IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
++LW+ L+ DGH+ V+ + FSP+ + + S D +++W+L ++
Sbjct: 394 VRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGK--SLASGSSDNTIRLWDLKTSLKSVSF 450
Query: 190 S 190
S
Sbjct: 451 S 451
Score = 64.0 bits (154), Expect = 4e-11
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
+ T L TL GH G V+ ++ +P + S D T+ +W L +
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG------KPLKT 366
Query: 61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
+ + S DG SGS D T+RLWDL+ G R + HT V S+ FS D +
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426
Query: 121 IVSSSRDKTIKLWN 134
+ S S D TI+LW+
Sbjct: 427 LASGSSDNTIRLWD 440
Score = 29.3 bits (64), Expect = 4.1
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 19/150 (12%)
Query: 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL 286
+ + + + L +
Sbjct: 10 ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSIT 69
Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
S+AFS D ++S S D TIKLW+ K K +E L VS+ + P
Sbjct: 70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI-------KSLEGLHDSSVSKLALSSP-- 120
Query: 347 CLSLAWSTDGQTLFAGYS--DNTIRVWQVS 374
DG ++ S D T+++W +S
Sbjct: 121 --------DGNSILLASSSLDGTVKLWDLS 142
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 46.2 bits (110), Expect = 3e-07
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN 134
GK R + HT V SVAFS D + S S D T+++W+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 45.4 bits (108), Expect = 4e-07
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 54 GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD 92
G + LKGH+ ++ + S DGN SGS D T+R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 43.1 bits (102), Expect = 3e-06
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
K GH+ V+ V FSP+ ++ S D V+VW+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGN--LLASGSDDGTVRVWD 39
Score = 39.3 bits (92), Expect = 7e-05
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
KL GHTG + +V SPDG+L ASG D +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 37.7 bits (88), Expect = 3e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 285 VLSVAFSVDNRQIVSSSRDKTIKLWN 310
V SVAFS D + S S D T+++W+
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK 45
+L TL GH G VT +A +P + S S D T+ +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
Score = 34.3 bits (79), Expect = 0.005
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVW 371
S+A+S DG L +G D T+RVW
Sbjct: 14 VTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 51.0 bits (122), Expect = 5e-07
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 108 DVLSVAFS-VDNRQIVSSSRDKTIKLWNTLA-----HCKFTIVE-DGHSDWVSCVRFSPN 160
++ VAF+ D +++ ++S D TI W + IV GH+ V V F P+
Sbjct: 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136
Query: 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
N ++ SAG D +V VW++ K H+ + ++ + DGSL + KD +
Sbjct: 137 AMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195
Query: 221 DLNDGK 226
D DG
Sbjct: 196 DPRDGT 201
Score = 44.1 bits (104), Expect = 7e-05
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 34/278 (12%)
Query: 14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD--DTNYGVPQKRLKGHSHFISDIV 71
G G + +A NP P + + S D T++ W + + N P L+GH+ + +
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 72 LSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
L S D + +WD+ GK + H+ + S+ +++D + ++S+DK +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
Query: 131 KLWNTLAHCKFTIVEDGHSD-------WVSCVRFSPNHQNPII---VSAGWDRMVKVWNL 180
N + TIV + + R ++ II S R + +W+
Sbjct: 193 ---NIIDPRDGTIVSSVEAHASAKSQRCLWAKR-----KDLIITLGCSKSQQRQIMLWDT 244
Query: 181 TNCKLKINHSGHTGYLN--TVTVSP----DGSLCASGGK-DMNAMLWDLNDGKHL--HTL 231
K+ T L+ + P D +L G K + N ++L + + +
Sbjct: 245 R----KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300
Query: 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
+ LC P S K +I+R + LY I
Sbjct: 301 SSVEPHKGLCMMPKWSLDTRKCEIARFYALTYHSLYTI 338
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 44.2 bits (105), Expect = 1e-06
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 54 GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD 92
G K LKGH+ ++ + S DG Y SGS D T++LWD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 44.2 bits (105), Expect = 2e-06
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN 134
G+ + + HT V SVAFS D + + S S D TIKLW+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.1 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
GH+ V+ V FSP+ + + S D +K+W+
Sbjct: 9 KGHTGPVTSVAFSPDGK--YLASGSDDGTIKLWD 40
Score = 37.3 bits (87), Expect = 4e-04
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 190 SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
GHTG + +V SPDG ASG D LWD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 36.5 bits (85), Expect = 8e-04
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK 45
+ +L TL GH G VT +A +P + S S D T+ +W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 285 VLSVAFSVDNRQIVSSSRDKTIKLWN 310
V SVAFS D + + S S D TIKLW+
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.025
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVW 371
S+A+S DG+ L +G D TI++W
Sbjct: 15 VTSVAFSPDGKYLASGSDDGTIKLW 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 47.0 bits (111), Expect = 1e-05
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 81 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-SVDNRQIVSSSRDKTIKLWNTLAHC 139
S +++ +++WD+A + ++H K V S+ + S D + S S D ++KLW+
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGY 195
++ + + CV+F P+ + D V ++L N KL I HS Y
Sbjct: 610 SIGTIKTKAN--ICCVQF-PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666
Query: 196 LNTVTVSPDGSLCASGGKDMNAMLWDLN 223
+ V D S S D LWDL+
Sbjct: 667 VRFV----DSSTLVSSSTDNTLKLWDLS 690
Score = 41.6 bits (97), Expect = 5e-04
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLND 224
+ S+ ++ +V+VW++ +L H + ++ S D +L ASG D + LW +N
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD 284
G + T+ I + F P+ S + + + + Y + + K+ P ++
Sbjct: 608 GVSIGTIKTKANICCVQF-PSESGRSLAFGSA----DHKVYYYDLRNPKL--PLCTMIGH 660
Query: 285 VLSVAFS--VDNRQIVSSSRDKTIKLWN 310
+V++ VD+ +VSSS D T+KLW+
Sbjct: 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWD 688
Score = 40.5 bits (94), Expect = 0.002
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGN 77
++ I N + S + + + +W + R +K H + I SS D
Sbjct: 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----VTEMKEHEKRVWSIDYSSADPT 589
Query: 78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTL 136
SGS D +++LW + G + + ++ V F ++ R + S D + ++ L
Sbjct: 590 LLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYD-L 647
Query: 137 AHCKFTIVED-GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS----- 190
+ K + GHS VS VRF + +VS+ D +K+W+L+ IN +
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704
Query: 191 -GHTGYLNTVTVSPDGSLCASGGK 213
GHT N V +S A+G +
Sbjct: 705 MGHTNVKNFVGLSVSDGYIATGSE 728
Score = 31.6 bits (71), Expect = 0.84
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 11 TLNGHNGWVTQIATNPKFPD--TILSCSRDNTLIIWKLTRDDTNYG-VPQKRLKGHSHFI 67
T+ GH+ V+ + +F D T++S S DNTL +W L+ + P GH++
Sbjct: 656 TMIGHSKTVSYV----RFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711
Query: 68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS 124
+ + LS Y +GS + ++ A ++ T D +S D Q +SS
Sbjct: 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 43.8 bits (103), Expect = 1e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV---PQKRLKGHSHFIS 68
L GH + + NP F + + S S D T+ +W++ +D + PQ LKGH IS
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 69 DIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFE 103
I + Y + S +D + +WD+ K R F+
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQ 163
Score = 33.4 bits (76), Expect = 0.21
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 101 RFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVE--------DGHSDW 151
+ + HT +L + F+ +I++S S D TI++W + H ++ E GH
Sbjct: 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWE-IPHNDESVKEIKDPQCILKGHKKK 127
Query: 152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK 184
+S + ++P + I+ S+G+D V +W++ N K
Sbjct: 128 ISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEK 159
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 32.3 bits (73), Expect = 0.48
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 36/223 (16%)
Query: 124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
S+ DKTIKLW + E+ SD P ++ ++ C
Sbjct: 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164
Query: 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV----HN----- 234
++ N H ++N+++ + D S D+ LW+L +V HN
Sbjct: 165 RVYAN--AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELT 221
Query: 235 DIITALCFSP--------NRSFQKIKL-DISRTLQKSN------LILYPINHGKMETPFF 279
++IT+ F P + S +IKL D+ ++ N L + ++ FF
Sbjct: 222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD-----FF 276
Query: 280 S-LFRDVLSVAFSVDNRQIVSSSRDKTIKLW--NTLAHCKFTI 319
+ + FS + R I+S T+K+W N + TI
Sbjct: 277 EEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTI 318
>gnl|CDD|225044 COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate
transport and metabolism].
Length = 399
Score = 31.2 bits (71), Expect = 0.98
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 17/96 (17%)
Query: 22 IATNPKFPDTIL-----SCSRD-----NTLIIWKLTRDDTN-YGVPQK--RLKGHS-HFI 67
IA +P F L S N + I +L DT + HF
Sbjct: 120 IALSPDFAQGRLVYFGISEPGGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFG 179
Query: 68 SDIVLSSDGN-YALSGSWDKTLRLWDLA--AGKTTR 100
+V DG Y +GS D AGK R
Sbjct: 180 GRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLR 215
>gnl|CDD|237449 PRK13616, PRK13616, lipoprotein LpqB; Provisional.
Length = 591
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 348 LSLAWSTDGQTLFAGYSDNTIRVWQVSV 375
+SL W T +L G SD VW V++
Sbjct: 500 VSLDWRTGD-SLVVGRSDPEHPVWYVNL 526
>gnl|CDD|236815 PRK10997, yieM, hypothetical protein; Provisional.
Length = 487
Score = 29.9 bits (68), Expect = 2.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 79 ALSGSWDKTL--------RLWDLAAGKTTRR 101
LSG + L RLWD++AG+ R
Sbjct: 168 TLSGQLEPVLAENDEAAGRLWDMSAGQLKRG 198
>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer
mitochondrial membrane. The voltage-dependent anion
channel (VDAC) regulates the flux of mostly anionic
metabolites through the outer mitochondrial membrane,
which is highly permeable to small molecules. VDAC is
the most abundant protein in the outer membrane, and
membrane potentials can toggle VDAC between open or
high-conducting and closed or low-conducting forms. VDAC
binds to and is regulated in part by hexokinase, an
interaction that renders mitochondria less susceptible
to pro-apoptotic signals, most likely by intefering with
VDAC's capability to respond to Bcl-2 family proteins.
While VDAC appears to play a key role in mitochondrially
induced cell death, a proposed involvement in forming
the mitochondrial permeability transition pore, which is
characteristic for damaged mitochondria and apoptosis,
has been challenged by more recent studies.
Length = 276
Score = 29.1 bits (66), Expect = 3.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
K K+N+ G G + P +L S G D +LN G H
Sbjct: 228 KAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAK----NLNQGGH 267
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 29.6 bits (67), Expect = 3.7
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 26/95 (27%)
Query: 279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ 338
S+ D +A+SVD V T++ DL T E PD ++
Sbjct: 134 ASISPDHNLLAYSVD----VLGDEQYTLR-----------FKDLAT----GEELPDEITN 174
Query: 339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
++ S AW+ DG+TLF D R +V
Sbjct: 175 TSG-------SFAWAADGKTLFYTRLDENHRPDKV 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.415
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,599,802
Number of extensions: 1705268
Number of successful extensions: 1475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 50
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)