Query psy6987
Match_columns 204
No_of_seqs 134 out of 1110
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:53:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 1.3E-48 2.8E-53 345.0 7.9 200 2-203 212-414 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 1.5E-48 3.2E-53 333.7 4.7 163 33-196 5-173 (292)
3 KOG2157|consensus 100.0 2.9E-38 6.4E-43 284.0 12.3 193 8-201 100-319 (497)
4 KOG2158|consensus 100.0 2.3E-37 4.9E-42 270.7 2.8 187 11-202 149-337 (565)
5 KOG2155|consensus 100.0 2.1E-32 4.6E-37 238.5 3.7 176 5-187 323-507 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.2 4.5E-11 9.7E-16 101.2 8.7 115 46-173 15-160 (262)
7 PF08443 RimK: RimK-like ATP-g 98.0 3.4E-06 7.4E-11 67.9 2.5 70 72-148 18-97 (190)
8 PRK05246 glutathione synthetas 97.8 3.8E-05 8.2E-10 66.6 6.3 69 71-148 134-214 (316)
9 TIGR01380 glut_syn glutathione 97.8 7.7E-05 1.7E-09 64.7 7.3 70 70-148 132-213 (312)
10 PF02955 GSH-S_ATP: Prokaryoti 97.7 8.5E-05 1.8E-09 59.3 5.7 71 69-148 9-91 (173)
11 PF13535 ATP-grasp_4: ATP-gras 97.7 3.8E-05 8.2E-10 60.2 3.5 85 47-148 2-100 (184)
12 PLN02941 inositol-tetrakisphos 97.6 0.00016 3.4E-09 63.3 6.3 108 36-150 94-207 (328)
13 TIGR00768 rimK_fam alpha-L-glu 97.5 0.00024 5.2E-09 59.5 5.8 87 46-148 85-184 (277)
14 COG0189 RimK Glutathione synth 97.4 0.00083 1.8E-08 58.6 8.7 113 35-168 105-229 (318)
15 PRK12458 glutathione synthetas 97.3 0.00056 1.2E-08 60.1 6.6 95 36-148 116-221 (338)
16 PF14403 CP_ATPgrasp_2: Circul 97.0 0.0011 2.3E-08 60.2 5.6 62 69-133 307-386 (445)
17 PRK10446 ribosomal protein S6 97.0 0.00084 1.8E-08 57.6 4.7 70 72-148 114-193 (300)
18 TIGR02144 LysX_arch Lysine bio 97.0 0.00098 2.1E-08 56.2 4.8 95 37-148 75-183 (280)
19 PRK12767 carbamoyl phosphate s 96.6 0.0048 1E-07 53.1 6.1 87 46-147 108-200 (326)
20 PF02655 ATP-grasp_3: ATP-gras 96.5 0.0014 3.1E-08 51.3 1.8 39 93-131 31-71 (161)
21 PRK07206 hypothetical protein; 96.3 0.0063 1.4E-07 54.3 5.0 77 47-131 106-199 (416)
22 TIGR03103 trio_acet_GNAT GNAT- 96.2 0.0056 1.2E-07 57.2 4.3 65 72-148 312-387 (547)
23 PRK06849 hypothetical protein; 96.1 0.025 5.4E-07 50.3 7.9 77 46-132 113-196 (389)
24 PRK08462 biotin carboxylase; V 96.0 0.0098 2.1E-07 53.8 5.0 42 92-133 153-208 (445)
25 COG0439 AccC Biotin carboxylas 96.0 0.01 2.2E-07 54.1 4.9 64 70-133 129-206 (449)
26 PRK01372 ddl D-alanine--D-alan 95.9 0.0069 1.5E-07 51.7 3.2 68 72-148 113-188 (304)
27 PRK14016 cyanophycin synthetas 95.8 0.01 2.2E-07 57.2 4.4 85 47-148 212-305 (727)
28 PRK08654 pyruvate carboxylase 95.7 0.021 4.6E-07 52.8 5.8 42 92-133 151-206 (499)
29 PRK08463 acetyl-CoA carboxylas 95.7 0.022 4.7E-07 52.3 5.9 42 92-133 151-206 (478)
30 TIGR02291 rimK_rel_E_lig alpha 95.6 0.092 2E-06 45.8 9.0 70 38-116 26-98 (317)
31 TIGR00514 accC acetyl-CoA carb 95.5 0.029 6.3E-07 50.9 5.9 42 92-133 151-206 (449)
32 PRK02186 argininosuccinate lya 95.5 0.033 7.2E-07 54.9 6.5 66 72-146 122-198 (887)
33 PRK12833 acetyl-CoA carboxylas 95.3 0.026 5.7E-07 51.6 5.1 42 92-133 154-209 (467)
34 TIGR01161 purK phosphoribosyla 95.2 0.016 3.5E-07 50.8 3.0 57 72-131 113-178 (352)
35 PRK12999 pyruvate carboxylase; 95.2 0.027 5.8E-07 57.0 4.9 43 91-133 154-210 (1146)
36 PRK08591 acetyl-CoA carboxylas 95.2 0.044 9.6E-07 49.6 5.9 42 92-133 151-206 (451)
37 TIGR01142 purT phosphoribosylg 95.0 0.017 3.8E-07 50.8 2.8 57 72-131 116-186 (380)
38 TIGR02068 cya_phycin_syn cyano 94.9 0.057 1.2E-06 53.2 6.2 83 47-148 211-304 (864)
39 PRK02471 bifunctional glutamat 94.9 0.06 1.3E-06 52.2 6.3 48 93-148 524-582 (752)
40 TIGR00877 purD phosphoribosyla 94.8 0.047 1E-06 49.0 5.0 74 47-131 102-191 (423)
41 PRK07178 pyruvate carboxylase 94.8 0.046 1E-06 50.1 4.9 43 91-133 149-205 (472)
42 PRK00885 phosphoribosylamine-- 94.7 0.073 1.6E-06 47.8 6.0 75 47-132 100-190 (420)
43 TIGR01235 pyruv_carbox pyruvat 94.7 0.059 1.3E-06 54.5 5.9 43 91-133 150-206 (1143)
44 PRK05586 biotin carboxylase; V 94.6 0.058 1.2E-06 49.0 5.0 42 92-133 151-206 (447)
45 TIGR01369 CPSaseII_lrg carbamo 94.4 0.1 2.2E-06 52.5 6.7 66 72-145 684-761 (1050)
46 PF15632 ATPgrasp_Ter: ATP-gra 94.3 0.13 2.9E-06 45.1 6.5 79 46-133 104-209 (329)
47 PRK09288 purT phosphoribosylgl 94.2 0.038 8.2E-07 48.9 2.9 40 92-131 148-199 (395)
48 PF14397 ATPgrasp_ST: Sugar-tr 94.1 0.33 7.2E-06 41.6 8.5 123 39-168 16-163 (285)
49 PRK06111 acetyl-CoA carboxylas 94.1 0.087 1.9E-06 47.6 5.1 42 92-133 151-206 (450)
50 PRK14571 D-alanyl-alanine synt 94.1 0.025 5.5E-07 48.4 1.6 51 92-150 124-182 (299)
51 TIGR01205 D_ala_D_alaTIGR D-al 93.9 0.048 1E-06 46.7 3.0 50 92-149 145-202 (315)
52 PRK13790 phosphoribosylamine-- 93.8 0.27 5.8E-06 43.8 7.6 49 92-146 101-159 (379)
53 PRK05294 carB carbamoyl phosph 93.7 0.11 2.3E-06 52.4 5.4 59 72-133 684-754 (1066)
54 TIGR01435 glu_cys_lig_rel glut 93.6 0.17 3.8E-06 48.9 6.4 48 93-148 511-569 (737)
55 PRK01966 ddl D-alanyl-alanine 93.5 0.039 8.5E-07 48.1 1.8 40 92-131 161-208 (333)
56 PRK14572 D-alanyl-alanine synt 93.4 0.082 1.8E-06 46.4 3.6 40 92-131 170-217 (347)
57 COG2308 Uncharacterized conser 93.3 0.45 9.8E-06 43.1 8.0 127 37-170 311-456 (488)
58 PRK06019 phosphoribosylaminoim 93.2 0.071 1.5E-06 47.2 2.9 41 91-131 133-180 (372)
59 PRK13278 purP 5-formaminoimida 93.2 0.075 1.6E-06 47.1 3.1 49 93-147 149-210 (358)
60 PRK06395 phosphoribosylamine-- 92.9 0.16 3.6E-06 46.1 4.8 40 93-132 141-192 (435)
61 PRK14569 D-alanyl-alanine synt 92.8 0.075 1.6E-06 45.6 2.3 40 92-131 129-175 (296)
62 PRK14568 vanB D-alanine--D-lac 92.7 0.054 1.2E-06 47.4 1.3 39 93-131 165-211 (343)
63 PRK12815 carB carbamoyl phosph 92.5 0.29 6.4E-06 49.3 6.4 57 72-131 685-751 (1068)
64 PF02786 CPSase_L_D2: Carbamoy 92.0 0.15 3.4E-06 41.8 3.2 52 80-134 28-93 (211)
65 COG1821 Predicted ATP-utilizin 91.8 0.12 2.6E-06 43.7 2.4 34 93-131 138-171 (307)
66 TIGR02712 urea_carbox urea car 91.4 0.36 7.9E-06 49.3 5.6 43 91-133 148-204 (1201)
67 PRK13277 5-formaminoimidazole- 91.0 0.21 4.5E-06 44.4 3.1 50 93-148 152-218 (366)
68 PRK10507 bifunctional glutathi 90.6 1.4 3.1E-05 41.8 8.5 54 94-148 528-588 (619)
69 PF07478 Dala_Dala_lig_C: D-al 90.3 0.14 3.1E-06 41.6 1.4 48 92-145 32-87 (203)
70 PHA02117 glutathionylspermidin 88.9 0.92 2E-05 40.9 5.5 53 95-148 309-367 (397)
71 PRK05294 carB carbamoyl phosph 88.1 0.84 1.8E-05 46.1 5.3 58 72-132 143-212 (1066)
72 PRK13789 phosphoribosylamine-- 88.1 1.3 2.8E-05 40.2 6.0 41 92-132 142-196 (426)
73 PLN02257 phosphoribosylamine-- 88.0 1.8 3.8E-05 39.4 6.9 50 80-132 127-190 (434)
74 TIGR01369 CPSaseII_lrg carbamo 88.0 0.69 1.5E-05 46.6 4.6 61 72-133 142-212 (1050)
75 PRK05784 phosphoribosylamine-- 87.8 0.85 1.8E-05 42.1 4.8 40 94-133 145-208 (486)
76 PRK14570 D-alanyl-alanine synt 86.7 0.31 6.8E-06 43.2 1.2 40 92-131 170-217 (364)
77 PF02222 ATP-grasp: ATP-grasp 84.7 3.3 7.1E-05 32.9 6.0 83 80-174 18-114 (172)
78 PLN02735 carbamoyl-phosphate s 82.8 1.2 2.6E-05 45.2 3.5 42 91-132 735-786 (1102)
79 COG4770 Acetyl/propionyl-CoA c 81.1 2.4 5.1E-05 39.8 4.4 92 42-133 80-206 (645)
80 PRK06524 biotin carboxylase-li 80.7 1.8 3.8E-05 40.1 3.5 40 92-131 180-226 (493)
81 PLN02948 phosphoribosylaminoim 80.4 1.5 3.2E-05 41.4 3.0 40 92-131 155-203 (577)
82 COG0754 Gsp Glutathionylspermi 80.3 3 6.5E-05 37.0 4.6 75 46-133 262-343 (387)
83 COG1038 PycA Pyruvate carboxyl 80.2 1.2 2.7E-05 43.4 2.3 65 70-134 135-213 (1149)
84 PRK12815 carB carbamoyl phosph 80.0 1.6 3.5E-05 44.2 3.2 58 72-132 143-212 (1068)
85 KOG0238|consensus 79.0 2.4 5.1E-05 39.4 3.7 100 33-134 69-203 (670)
86 COG0027 PurT Formate-dependent 78.4 4.1 8.9E-05 35.8 4.8 65 76-149 132-208 (394)
87 PF01071 GARS_A: Phosphoribosy 77.8 5.1 0.00011 32.6 4.9 54 75-131 22-90 (194)
88 KOG0369|consensus 75.8 2.2 4.7E-05 41.0 2.6 52 81-135 175-240 (1176)
89 PF02750 Synapsin_C: Synapsin, 75.6 0.54 1.2E-05 38.2 -1.3 111 45-175 7-125 (203)
90 PLN02735 carbamoyl-phosphate s 74.5 2.5 5.3E-05 43.0 2.8 39 94-132 181-229 (1102)
91 COG2232 Predicted ATP-dependen 71.9 3.3 7.1E-05 36.5 2.6 44 93-144 149-192 (389)
92 COG3919 Predicted ATP-grasp en 70.2 7.7 0.00017 33.9 4.4 55 71-131 128-200 (415)
93 KOG3895|consensus 68.4 5.2 0.00011 35.6 3.0 102 38-145 189-292 (488)
94 TIGR02049 gshA_ferroox glutama 68.2 16 0.00036 32.6 6.1 81 93-187 257-358 (403)
95 PF04174 CP_ATPgrasp_1: A circ 62.6 4.4 9.5E-05 35.6 1.5 75 37-116 233-310 (330)
96 PRK14573 bifunctional D-alanyl 57.9 5.7 0.00012 38.9 1.6 40 92-131 609-656 (809)
97 PF08886 GshA: Glutamate-cyste 54.4 24 0.00052 31.7 4.7 85 92-190 259-364 (404)
98 COG1759 5-formaminoimidazole-4 52.6 10 0.00022 33.4 2.0 39 93-131 150-203 (361)
99 COG0151 PurD Phosphoribosylami 52.0 31 0.00067 31.4 5.1 40 75-117 123-162 (428)
100 PF02041 Auxin_BP: Auxin bindi 38.5 39 0.00085 26.5 3.1 24 140-164 117-140 (167)
101 COG0026 PurK Phosphoribosylami 29.5 3.6E+02 0.0078 24.3 8.1 119 38-172 85-219 (375)
102 PF08594 UPF0300: Uncharacteri 27.2 80 0.0017 26.1 3.4 28 142-173 76-105 (215)
103 KOG2157|consensus 26.9 53 0.0012 30.6 2.6 52 121-176 262-313 (497)
104 PF08442 ATP-grasp_2: ATP-gras 26.6 2.4E+02 0.0051 22.9 6.1 45 72-118 18-68 (202)
105 PF10340 DUF2424: Protein of u 25.2 83 0.0018 28.3 3.4 33 137-169 99-138 (374)
106 TIGR01016 sucCoAbeta succinyl- 24.6 57 0.0012 29.0 2.3 24 94-117 41-68 (386)
107 PF05770 Ins134_P3_kin: Inosit 23.4 73 0.0016 27.8 2.7 94 39-133 83-182 (307)
108 COG4443 Uncharacterized protei 22.2 34 0.00073 22.9 0.3 14 133-146 29-44 (72)
No 1
>KOG2156|consensus
Probab=100.00 E-value=1.3e-48 Score=344.97 Aligned_cols=200 Identities=45% Similarity=0.739 Sum_probs=180.9
Q ss_pred ceeccccc--cCCCCeEEEeeccCCChhHhhhcCCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccCh
Q psy6987 2 VFLNLGVT--SDVADFNLLWSGLHPKPQTLRSLAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP 79 (204)
Q Consensus 2 ~~~~~~~~--~~~~~~d~~W~~~~~~~~~~~~l~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~ 79 (204)
|++++|.+ ...++|..+|.... +.--++.+++||+||||||+.-|+|||.|.+++.+++...+...+.|+|+||+||
T Consensus 212 vl~~sgfkivk~n~dw~g~Wg~h~-ksp~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP 290 (662)
T KOG2156|consen 212 VLANSGFKIVKVNDDWMGVWGHHL-KSPSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILP 290 (662)
T ss_pred HHHhcccEEecccchHHHHhhhhc-CCchhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeecc
Confidence 56667764 57899999997654 3334689999999999999999999999999999998888878999999999999
Q ss_pred hHHHHHHHHHhC-CCCcEEEcCCCCCCCCceEEeCCCCCCCCccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEE
Q psy6987 80 GDFRELTISHYR-TRGPWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIY 158 (204)
Q Consensus 80 ~~~~~~~~~~~~-~~~~wI~KP~~~~rG~GI~~~~~~~~i~~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y 158 (204)
+|.+++.....+ ....||+||.+++||.||.++++..++.+..+.|||+||++|+||+|.|||+|+||+|+|.+|++||
T Consensus 291 ~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy 370 (662)
T KOG2156|consen 291 ADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIY 370 (662)
T ss_pred ccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEE
Confidence 999999876644 4667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccEEeecCCCCCCCCCCCCCccccccccccccCCCCCCCCCC
Q psy6987 159 MYEEGLVRFATVKYDSGRKHLWNPCMHLCNYSINKHHSDYIKDMN 203 (204)
Q Consensus 159 ~~~~g~~r~~~~~y~~~~~~~~~~~~HlTN~~vqk~~~~y~~~~~ 203 (204)
+|++|++|||+.+|++...++.|++||+|||+++|... |..++.
T Consensus 371 ~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~~-ys~~k~ 414 (662)
T KOG2156|consen 371 IYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKESN-YSLNKY 414 (662)
T ss_pred EeccceeeeccccCCcccccccceeEEeccccccccch-hhhhhH
Confidence 99999999999999998888899999999999999887 655443
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.5e-48 Score=333.70 Aligned_cols=163 Identities=47% Similarity=0.817 Sum_probs=74.7
Q ss_pred CCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCC-CcEEEcCCCCCCCCceEE
Q psy6987 33 APHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTR-GPWIVKPVASSRGRGIYI 111 (204)
Q Consensus 33 ~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~-~~wI~KP~~~~rG~GI~~ 111 (204)
.++|++|||||+++||+|+.|+++++++..... ..++|+|+||.||.++.+|...+.+.. +.||+||++++||+||++
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~-~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~l 83 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFP-KEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIKL 83 (292)
T ss_dssp CHHTT-TSS--EEEE------------------------------HHHHHHHHHHHHHTTS---EEEEES-------EEE
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcC-CcccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCcee
Confidence 458999999999999999999999999986543 337899999999999999988766543 589999999999999999
Q ss_pred eCCCCCCC-----CccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEEEecccEEeecCCCCCCCCCCCCCccccc
Q psy6987 112 VDTPDEVP-----LEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFATVKYDSGRKHLWNPCMHL 186 (204)
Q Consensus 112 ~~~~~~i~-----~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~y~~~~~~~~~~~~Hl 186 (204)
+++.+++. ...++|||+||+||+||+|||||||+||||+|.+|++||+|++|++|+|+++|+.+..++.+.++||
T Consensus 84 ~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~Hl 163 (292)
T PF03133_consen 84 FNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHL 163 (292)
T ss_dssp ES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS----------------
T ss_pred cCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeeccccccccccccc
Confidence 99988876 5789999999999999999999999999999999999999999999999999996444577899999
Q ss_pred cccccccCCC
Q psy6987 187 CNYSINKHHS 196 (204)
Q Consensus 187 TN~~vqk~~~ 196 (204)
||++|||+++
T Consensus 164 TN~~i~k~~~ 173 (292)
T PF03133_consen 164 TNYSIQKKSE 173 (292)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999999844
No 3
>KOG2157|consensus
Probab=100.00 E-value=2.9e-38 Score=283.98 Aligned_cols=193 Identities=41% Similarity=0.693 Sum_probs=169.9
Q ss_pred cccCCCCeEEEeeccCCChhHhhhcCCC-cEEcccCCCccccchHHHHHHHHHHHhhcCCC-----------CCCceecc
Q psy6987 8 VTSDVADFNLLWSGLHPKPQTLRSLAPH-QRVNHFPRSYELTRKDRLYKNIEKMQHSKGFK-----------HFDFIPST 75 (204)
Q Consensus 8 ~~~~~~~~d~~W~~~~~~~~~~~~l~~~-Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~-----------~~~~~P~T 75 (204)
+....++|+|.|.+.........-+.|+ |++||||++.+|++|+.+++++++++...+.. ..+++|.+
T Consensus 100 ~~~~~~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~ 179 (497)
T KOG2157|consen 100 FTESAEDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLALLERSRLPKAQLEDYILLDYVETT 179 (497)
T ss_pred ecccccceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHHhccccccchhhcccceeecccchh
Confidence 3457789999999976544344567777 99999999999999999999999998865432 57999999
Q ss_pred ccChhHHHHHHHHHhC--CCCcEEEcCCCCCCCCceEEeCCCCCCC-------------CccceEEEecccCCcccCCcc
Q psy6987 76 FVMPGDFRELTISHYR--TRGPWIVKPVASSRGRGIYIVDTPDEVP-------------LEESVVVAKYIEKPLLVEGHK 140 (204)
Q Consensus 76 f~l~~~~~~~~~~~~~--~~~~wI~KP~~~~rG~GI~~~~~~~~i~-------------~~~~~vvQkYI~~p~Li~grK 140 (204)
+.++.+.+.+...+.. ..+.||+||.+.+||+||.+++..++++ ..+.+++|+||++|+||+|+|
T Consensus 180 ~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~K 259 (497)
T KOG2157|consen 180 FVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHK 259 (497)
T ss_pred hhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCce
Confidence 9999999999887755 4789999999999999999999876642 367899999999999999999
Q ss_pred eeeEEEEEEeccCCeEEEEecccEEeecCCCCCCCCCCCCCccccccccccccCCCCCCCC
Q psy6987 141 CDLRLYVVVTSYDPLIIYMYEEGLVRFATVKYDSGRKHLWNPCMHLCNYSINKHHSDYIKD 201 (204)
Q Consensus 141 FDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~y~~~~~~~~~~~~HlTN~~vqk~~~~y~~~ 201 (204)
||||.||+|++.+|+.+|.|++|++|+|+++|+. ..++.+.++||||++|||++++|..-
T Consensus 260 fDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLtN~siqK~~~~~~~~ 319 (497)
T KOG2157|consen 260 FDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLTNVSIQKLYPNYCHL 319 (497)
T ss_pred eeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhhccccccCCCCcccc
Confidence 9999999999999999999999999999999997 56788899999999999999998765
No 4
>KOG2158|consensus
Probab=100.00 E-value=2.3e-37 Score=270.65 Aligned_cols=187 Identities=31% Similarity=0.464 Sum_probs=160.8
Q ss_pred CCCCeEEEeeccCCChhHhhhcCCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHh
Q psy6987 11 DVADFNLLWSGLHPKPQTLRSLAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHY 90 (204)
Q Consensus 11 ~~~~~d~~W~~~~~~~~~~~~l~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~ 90 (204)
-+.+|+..|..........++.. +|.+|||||+.+++ |+.|. |.+|++.. +..+.|+|.||.+|.++..|.+...
T Consensus 149 ~~~~~~~l~~v~f~~~~~~~~~~-fqrvn~fPgm~e~~-kd~Ls--l~~mqkif-peey~fyp~sw~lPa~l~df~a~~~ 223 (565)
T KOG2158|consen 149 LLEKYENLLAVAFQTFLSGRAAS-FQRENNFPGMREKE-KDILD--LLEMQKIF-PEEYMFYPTSWRLPAPLCDFPASTE 223 (565)
T ss_pred hhhhhhhHHHHhhchhhhccchh-hhhhhcCchHHHHH-HHHHh--HHHHHhcC-hHHhcCCCccccCchHHHHHHHHHH
Confidence 35566666655433222333444 79999999999999 99888 88898775 4678999999999999998888766
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCCCccceEEEecccCCccc-CCcceeeEEEEEEeccCCeEEEEecccEEeecC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLV-EGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFAT 169 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~~~~~vvQkYI~~p~Li-~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~ 169 (204)
.....+|+||+.|++|.||.++++..++...+..++|+||..|||+ |+.|||+|+|.|++|++|++||++++|++|||+
T Consensus 224 ~~KrtfivkpDsgaqg~giylisDir~~g~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcT 303 (565)
T KOG2158|consen 224 IMKRTFIVKPDSGAQGSGIYLISDIREKGEYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCT 303 (565)
T ss_pred HhcccEEECCCCCCCCcceeeechhhhhhHHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhhh
Confidence 6677999999999999999999888877777778999999999999 888999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCCccccccccccccCCCCCCCCC
Q psy6987 170 VKYDS-GRKHLWNPCMHLCNYSINKHHSDYIKDM 202 (204)
Q Consensus 170 ~~y~~-~~~~~~~~~~HlTN~~vqk~~~~y~~~~ 202 (204)
++|.. +..+.++.++|||||++||.|++|.-+.
T Consensus 304 eky~ePts~n~~~lymhlTnYslnk~nsny~hsd 337 (565)
T KOG2158|consen 304 EKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSD 337 (565)
T ss_pred ccccCCCcccHHHHHHHHHHhhhcCCCccccccC
Confidence 99974 5578889999999999999999998765
No 5
>KOG2155|consensus
Probab=99.97 E-value=2.1e-32 Score=238.50 Aligned_cols=176 Identities=26% Similarity=0.417 Sum_probs=156.3
Q ss_pred ccccccCCCCeEEEeeccCCCh-hHhhhcCCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHH
Q psy6987 5 NLGVTSDVADFNLLWSGLHPKP-QTLRSLAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFR 83 (204)
Q Consensus 5 ~~~~~~~~~~~d~~W~~~~~~~-~~~~~l~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~ 83 (204)
++.++.++.|||++|+..+.+. ..+....|.|+||+||.+..|+-|+.|+...++ +.+..+|+|.||.|.+++.
T Consensus 323 ~f~~t~~~kdADilw~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r-----~~g~~~Wlq~TyNL~TqLp 397 (631)
T KOG2155|consen 323 KFEYTDDIKDADILWMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR-----DPGKNDWLQLTYNLNTQLP 397 (631)
T ss_pred ceEeccCccccceeeehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh-----cCCCCcccccccccccchH
Confidence 4667889999999999887642 223445799999999999999999999998776 5567789999999999999
Q ss_pred HHHHHHh-----CCCCcEEEcCCCCCCCCceEEeCCCCCCC---CccceEEEecccCCcccCCcceeeEEEEEEeccCCe
Q psy6987 84 ELTISHY-----RTRGPWIVKPVASSRGRGIYIVDTPDEVP---LEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPL 155 (204)
Q Consensus 84 ~~~~~~~-----~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl 155 (204)
+|+..++ ...+.||+||++.+||....+..++.+|+ .+++.|||+||++|+|+.|-|||||+.||+.|++|+
T Consensus 398 qFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl 477 (631)
T KOG2155|consen 398 QFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPL 477 (631)
T ss_pred HHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccceEEEEEEccccch
Confidence 9998765 24689999999999999999999999886 478999999999999998889999999999999999
Q ss_pred EEEEecccEEeecCCCCCCCCCCCCCcccccc
Q psy6987 156 IIYMYEEGLVRFATVKYDSGRKHLWNPCMHLC 187 (204)
Q Consensus 156 ~~y~~~~g~~r~~~~~y~~~~~~~~~~~~HlT 187 (204)
++|+|+..++||+..+|+.+ ++.+...|.|
T Consensus 478 ~~yvy~~FWiRfsnn~fsL~--~f~dyEtHFT 507 (631)
T KOG2155|consen 478 TAYVYNRFWIRFSNNEFSLS--NFEDYETHFT 507 (631)
T ss_pred hhhheeheeeeecCCccchh--hhhhhhhhhh
Confidence 99999999999999999987 4678889987
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.22 E-value=4.5e-11 Score=101.24 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCC-----
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEV----- 118 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i----- 118 (204)
.+-+|..+++.|.+ .+....++|+|..+. .++.+++..+ +.-++||..|++|+||..+.....-
T Consensus 15 ~~~~Kw~v~~~L~~-----~~~l~~~LP~T~~~~~~~~l~~~L~~y----~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~ 85 (262)
T PF14398_consen 15 GFFDKWEVYKALSR-----DPELRPYLPETELLTSFEDLREMLNKY----KSVYLKPDNGSKGKGIIRIEKKGGGYRIQY 85 (262)
T ss_pred CCCCHHHHHHHHHc-----CCcchhhCCCceEcCCHHHHHHHHHHC----CEEEEEeCCCCCCccEEEEEEeCCEEEEEE
Confidence 35789999999887 345678999998884 6888888877 7899999999999999988763321
Q ss_pred ------------------------CCccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEEEecccEEeecCCCCC
Q psy6987 119 ------------------------PLEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFATVKYD 173 (204)
Q Consensus 119 ------------------------~~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~y~ 173 (204)
.....||||++|+ ...++||.||+|+.|.-.... -|.....++|++...--
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~~G---~W~vtg~~~Rva~~~~i 160 (262)
T PF14398_consen 86 RNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNGSG---KWQVTGIVARVAKPGSI 160 (262)
T ss_pred ccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECCCC---CEEEEEEEEEEcCCCCc
Confidence 1356999999999 778999999999999987643 35556788999877643
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.00 E-value=3.4e-06 Score=67.89 Aligned_cols=70 Identities=37% Similarity=0.734 Sum_probs=37.2
Q ss_pred eeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcce
Q psy6987 72 IPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKC 141 (204)
Q Consensus 72 ~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKF 141 (204)
+|+|+.. +.+.+++..... ..+.|+||..|+.|+|+.++++.+++. ...+.++|+||+.+ +| -
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~--~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~---~g--~ 90 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG--GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD---GG--R 90 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH----SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S---S----
T ss_pred CCCEEEECCHHHHHHHHHHhc--CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC---CC--c
Confidence 6999877 556677776553 678999999999999999999876542 24688999999944 12 5
Q ss_pred eeEEEEE
Q psy6987 142 DLRLYVV 148 (204)
Q Consensus 142 DiR~yvl 148 (204)
|+|++|+
T Consensus 91 d~Rv~Vi 97 (190)
T PF08443_consen 91 DLRVYVI 97 (190)
T ss_dssp -EEEEEE
T ss_pred EEEEEEE
Confidence 9999887
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=97.83 E-value=3.8e-05 Score=66.65 Aligned_cols=69 Identities=29% Similarity=0.532 Sum_probs=51.0
Q ss_pred ceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCC-C---------CCccceEEEecccCCcccCC
Q psy6987 71 FIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDE-V---------PLEESVVVAKYIEKPLLVEG 138 (204)
Q Consensus 71 ~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~-i---------~~~~~~vvQkYI~~p~Li~g 138 (204)
++|+|.... .++.+++..+ +..|+||..|+.|+||..+...+. + ....++++|+||+.+- +
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~----~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~---~ 206 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEH----GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK---E 206 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHC----CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC---C
Confidence 699998774 4555666654 479999999999999999965332 1 1246899999998432 2
Q ss_pred cceeeEEEEE
Q psy6987 139 HKCDLRLYVV 148 (204)
Q Consensus 139 rKFDiR~yvl 148 (204)
-|+|++++
T Consensus 207 --~D~Rv~vv 214 (316)
T PRK05246 207 --GDKRILLV 214 (316)
T ss_pred --CCEEEEEE
Confidence 39998876
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.77 E-value=7.7e-05 Score=64.68 Aligned_cols=70 Identities=27% Similarity=0.533 Sum_probs=50.9
Q ss_pred CceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCC-C---------CCccceEEEecccCCcccC
Q psy6987 70 DFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDE-V---------PLEESVVVAKYIEKPLLVE 137 (204)
Q Consensus 70 ~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~-i---------~~~~~~vvQkYI~~p~Li~ 137 (204)
..+|+|.... .++.+|...+ +..|+||..|+.|+|+..++..+. . ....++++|+||+.+ .
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~----g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~---~ 204 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEH----GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEI---K 204 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc----CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccc---c
Confidence 3699998763 4556666544 379999999999999998875331 1 124689999999843 2
Q ss_pred CcceeeEEEEE
Q psy6987 138 GHKCDLRLYVV 148 (204)
Q Consensus 138 grKFDiR~yvl 148 (204)
+ -|+|++|+
T Consensus 205 ~--~D~Rv~vv 213 (312)
T TIGR01380 205 E--GDKRILLI 213 (312)
T ss_pred C--CCEEEEEE
Confidence 2 49999886
No 10
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.69 E-value=8.5e-05 Score=59.27 Aligned_cols=71 Identities=28% Similarity=0.546 Sum_probs=44.1
Q ss_pred CCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCC-C-------C--CccceEEEecccCCccc
Q psy6987 69 FDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDE-V-------P--LEESVVVAKYIEKPLLV 136 (204)
Q Consensus 69 ~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~-i-------~--~~~~~vvQkYI~~p~Li 136 (204)
.+++|+|++-. .++.+|...+ +.+|+||..|..|+|+..++.-+. + . ...++++|+||+.= -
T Consensus 9 ~~~~P~T~vs~~~~~i~~f~~~~----~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i--~ 82 (173)
T PF02955_consen 9 PELIPPTLVSRDKEEIRAFIEEH----GDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI--K 82 (173)
T ss_dssp CCCS--EEEES-HHHHHHHHHHH----SSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG--G
T ss_pred cccCcCEEEECCHHHHHHHHHHC----CCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc--c
Confidence 37899998874 4667777766 449999999999999999988532 1 1 24679999999842 2
Q ss_pred CCcceeeEEEEE
Q psy6987 137 EGHKCDLRLYVV 148 (204)
Q Consensus 137 ~grKFDiR~yvl 148 (204)
+| |.|+.++
T Consensus 83 ~G---DkRii~~ 91 (173)
T PF02955_consen 83 EG---DKRIILF 91 (173)
T ss_dssp G----EEEEEEE
T ss_pred CC---CEEEEEE
Confidence 55 7787665
No 11
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.67 E-value=3.8e-05 Score=60.21 Aligned_cols=85 Identities=29% Similarity=0.531 Sum_probs=53.7
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccChh--HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG--DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL---- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~--~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~---- 120 (204)
+.+|..+.+.+++. +. . +|+++.+.. ++.++.. ....+||+||..++.|+|+.++++.+++..
T Consensus 2 ~~dK~~~~~~~~~~----gv---~-~P~~~~~~~~~~~~~~~~---~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~ 70 (184)
T PF13535_consen 2 CNDKYRMRELLKKA----GV---P-VPKTRIVDSEEELRAFAE---DLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAE 70 (184)
T ss_dssp TCCHHHHHHHHHHH----TS--------EEEECSHHHHHHHHH---HSSSSEEEEESS-STTTT-EEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc----Cc---C-CCCEEEECCHHHHHHHHH---HcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHH
Confidence 46788888777752 21 2 777777743 3444443 334799999999999999999999877632
Q ss_pred --------ccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 121 --------EESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 121 --------~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
...+++|+||+ |.-+.++.++.
T Consensus 71 ~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 71 IREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred HHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 35799999999 66677776655
No 12
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.57 E-value=0.00016 Score=63.26 Aligned_cols=108 Identities=14% Similarity=0.272 Sum_probs=76.3
Q ss_pred cEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHH--HHHHhCCCCcEEEcCCCC---CCCCceE
Q psy6987 36 QRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFREL--TISHYRTRGPWIVKPVAS---SRGRGIY 110 (204)
Q Consensus 36 Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~--~~~~~~~~~~wI~KP~~~---~rG~GI~ 110 (204)
-.+|....-..+.+|..+...|.+.....+ ...=-.|+|+.+.....++ .....+..-+.|+||-.| +.|+|+.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~-~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~ 172 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDG-YGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMS 172 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCccc-CCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceE
Confidence 466888888888899888888776431111 1112489999886542222 122334456899999999 9999999
Q ss_pred EeCCCCCCCC-ccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 111 IVDTPDEVPL-EESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 111 ~~~~~~~i~~-~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
++.+.+.+.. ..++++|+||..| | .|+|+||+=.
T Consensus 173 lv~~~~~L~~l~~p~~lQEfVnh~----g--~d~RVfVvGd 207 (328)
T PLN02941 173 LAYDQEGLSKLEPPLVLQEFVNHG----G--VLFKVYVVGD 207 (328)
T ss_pred EecCHHHHHhcCCcEEEEEecCCC----C--EEEEEEEECC
Confidence 9999876543 3479999999876 3 5999999843
No 13
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.46 E-value=0.00024 Score=59.51 Aligned_cols=87 Identities=25% Similarity=0.290 Sum_probs=59.6
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---- 119 (204)
...+|..+.+.+++. +. -+|+|+.+. .++.++... ..-++|+||..|+.|+|+.++++.+++.
T Consensus 85 ~~~dK~~~~~~l~~~----gi----~~P~t~~~~~~~~~~~~~~~---~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~ 153 (277)
T TIGR00768 85 NAGDKFLTSQLLAKA----GL----PQPRTGLAGSPEEALKLIEE---IGFPVVLKPVFGSWGRLVSLARDKQAAETLLE 153 (277)
T ss_pred HHhhHHHHHHHHHHC----CC----CCCCEEEeCCHHHHHHHHHh---cCCCEEEEECcCCCCCceEEEcCHHHHHHHHH
Confidence 356666666666541 21 268888774 344454443 2358999999999999999999876642
Q ss_pred -------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 -------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 -------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
...++++|+||+.+ .-+|+|++++
T Consensus 154 ~~~~~~~~~~~~lvQe~I~~~-----~~~~~rv~v~ 184 (277)
T TIGR00768 154 HFEQLNGPQNLFYVQEYIKKP-----GGRDIRVFVV 184 (277)
T ss_pred HHHHhcccCCcEEEEeeecCC-----CCceEEEEEE
Confidence 12479999999832 1268998874
No 14
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00083 Score=58.56 Aligned_cols=113 Identities=26% Similarity=0.355 Sum_probs=71.3
Q ss_pred CcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChh--HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEe
Q psy6987 35 HQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG--DFRELTISHYRTRGPWIVKPVASSRGRGIYIV 112 (204)
Q Consensus 35 ~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~--~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~ 112 (204)
.-.+|.-..-..-.+|-.....+.+ .+ --+|.|.+... +...+...+ ...+-|+||..|+.|+||+++
T Consensus 105 ~~viN~p~~i~~~~nK~~~~~~l~~----~~----ipvP~T~i~~~~~~~~~~~~~~--~g~pvVlKp~~Gs~G~gV~~v 174 (318)
T COG0189 105 VPVINDPQSIRRCRNKLYTTQLLAK----AG----IPVPPTLITRDPDEAAEFVAEH--LGFPVVLKPLDGSGGRGVFLV 174 (318)
T ss_pred CeEECCHHHHHhhhhHHHHHHHHHh----cC----CCCCCEEEEcCHHHHHHHHHHh--cCCCEEEeeCCCCCccceEEe
Confidence 3445544444444455444444443 11 24799988854 444555432 357999999999999999999
Q ss_pred CCCC-CCCC---------ccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEEEecccEEeec
Q psy6987 113 DTPD-EVPL---------EESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFA 168 (204)
Q Consensus 113 ~~~~-~i~~---------~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~ 168 (204)
++.+ ++.. ...+++|+||..+- =|.|.++++... |...| ++-|.+
T Consensus 175 ~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~------~~~rrivv~~~~-~~~~y----~~~R~~ 229 (318)
T COG0189 175 EDADPELLSLLETLTQEGRKLIIVQEYIPKAK------RDDRRVLVGGGE-VVAIY----ALARIP 229 (318)
T ss_pred cCCChhHHHHHHHHhccccceEehhhhcCccc------CCcEEEEEeCCE-EeEEe----eecccc
Confidence 9998 5431 23699999999763 366666666542 33333 555544
No 15
>PRK12458 glutathione synthetase; Provisional
Probab=97.32 E-value=0.00056 Score=60.07 Aligned_cols=95 Identities=19% Similarity=0.321 Sum_probs=61.4
Q ss_pred cEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeC
Q psy6987 36 QRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD 113 (204)
Q Consensus 36 Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~ 113 (204)
..+|+-........|..+.. +. . ..+|.|++.. .++.+|...+. ..+.|+||..|+.|+||.+++
T Consensus 116 ~viN~p~~i~~~~dK~~~~~----l~-----~--~~vP~T~v~~~~~~~~~~~~~~~--~~pvVvKPl~G~gG~gV~~v~ 182 (338)
T PRK12458 116 LVVNDPDGLRIANNKLYFQS----FP-----E--EVRPTTHISRNKEYIREFLEESP--GDKMILKPLQGSGGQGVFLIE 182 (338)
T ss_pred eEecCHHHHHhccCHHHHHh----hc-----c--CCCCCEEEeCCHHHHHHHHHHcC--CCeEEEEECCCCCccCeEEEe
Confidence 34566555555555654321 11 1 2689998764 45556655431 124999999999999999998
Q ss_pred CCCC--C-------CCccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 114 TPDE--V-------PLEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 114 ~~~~--i-------~~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
+.+. + ....++++|+||+.+ . ..|+|++++
T Consensus 183 ~~~~~~~~~ile~~~~~~~~ivQeyI~~~---~--~gDiRv~vv 221 (338)
T PRK12458 183 KSAQSNLNQILEFYSGDGYVIAQEYLPGA---E--EGDVRILLL 221 (338)
T ss_pred cCChhhHHHHHHHHhhCCCEEEEEcccCC---C--CCCEEEEEE
Confidence 6553 1 125689999999844 1 369999864
No 16
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=97.04 E-value=0.0011 Score=60.21 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=46.4
Q ss_pred CCceeccccChh----------HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCC-----C---CccceEEEecc
Q psy6987 69 FDFIPSTFVMPG----------DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEV-----P---LEESVVVAKYI 130 (204)
Q Consensus 69 ~~~~P~Tf~l~~----------~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i-----~---~~~~~vvQkYI 130 (204)
..++|.|..+.. ++-++.. ..+..||+||.++..|+||.+=...++- + ..++||+|+|+
T Consensus 307 ~~HvP~T~~l~~~~~~~~g~~~dL~~~~~---a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v 383 (445)
T PF14403_consen 307 RRHVPWTRLLTAGRTTYQGEDVDLVEFAI---ANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYILQEYV 383 (445)
T ss_pred HHhCCceEEEcCccccccccchhHHHHHH---hchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 468999999976 4434333 3457899999999999999998775431 1 25699999999
Q ss_pred cCC
Q psy6987 131 EKP 133 (204)
Q Consensus 131 ~~p 133 (204)
.-+
T Consensus 384 ~~~ 386 (445)
T PF14403_consen 384 RPP 386 (445)
T ss_pred cCC
Confidence 843
No 17
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.04 E-value=0.00084 Score=57.65 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=48.6
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcce
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKC 141 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKF 141 (204)
+|+|.... .++.++.... ...++|+||..|+.|+|+.++++.+++. ...+++||+||+.+ .-.
T Consensus 114 ~P~t~~~~~~~~~~~~~~~~--~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~ 186 (300)
T PRK10446 114 LPVTGIAHSPDDTSDLIDMV--GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGC 186 (300)
T ss_pred CCCEEEeCCHHHHHHHHHHh--CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCc
Confidence 67776653 3334443322 1358999999999999999998865432 23579999999732 237
Q ss_pred eeEEEEE
Q psy6987 142 DLRLYVV 148 (204)
Q Consensus 142 DiR~yvl 148 (204)
|+|+.++
T Consensus 187 d~rv~vi 193 (300)
T PRK10446 187 DIRCLVV 193 (300)
T ss_pred eEEEEEE
Confidence 9999876
No 18
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.01 E-value=0.00098 Score=56.20 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=60.0
Q ss_pred EEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCC
Q psy6987 37 RVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDT 114 (204)
Q Consensus 37 ~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~ 114 (204)
.+|.........+|......+++ .+. =+|+|+.+. .++.++.. ....++|+||..|+.|+|+.++.+
T Consensus 75 ~~n~~~~~~~~~dK~~~~~~l~~----~gi----p~P~t~~~~~~~~~~~~~~---~~~~P~vvKP~~g~~g~gv~~v~~ 143 (280)
T TIGR02144 75 VINSSHVIEACGDKIFTYLKLAK----AGV----PTPRTYLAFDREAALKLAE---ALGYPVVLKPVIGSWGRLVALIRD 143 (280)
T ss_pred EECcHHHHHHHhhHHHHHHHHHH----CCc----CCCCeEeeCCHHHHHHHHH---HcCCCEEEEECcCCCcCCEEEECC
Confidence 44543333345555555554443 121 158887763 33333332 234589999999999999999998
Q ss_pred CCCCC------------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 115 PDEVP------------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 115 ~~~i~------------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
.+++. ...++++|+||+.| -.|+|++++
T Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------~~d~~v~vi 183 (280)
T TIGR02144 144 KDELESLLEHKEVLGGSQHKLFYIQEYINKP------GRDIRVFVI 183 (280)
T ss_pred HHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------CCceEEEEE
Confidence 66532 12479999999843 368888886
No 19
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=96.62 E-value=0.0048 Score=53.12 Aligned_cols=87 Identities=20% Similarity=0.378 Sum_probs=56.2
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChh--HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG--DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~--~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---- 119 (204)
...+|..+.+.+.+. +. -.|+|+.+.+ ++.+.. ......-++|+||..++.|+|+.++++.+++.
T Consensus 108 ~~~dK~~~~~~l~~~----gi----p~p~~~~~~~~~~~~~~~-~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~ 178 (326)
T PRK12767 108 ICNDKWLTYEFLKEN----GI----PTPKSYLPESLEDFKAAL-AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLE 178 (326)
T ss_pred HHhcHHHHHHHHHHc----CC----CCCCEEcccCHHHHHhhh-hcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHH
Confidence 345666666665542 21 2688877643 332211 11234568999999999999999999977653
Q ss_pred CccceEEEecccCCcccCCcceeeEEEE
Q psy6987 120 LEESVVVAKYIEKPLLVEGHKCDLRLYV 147 (204)
Q Consensus 120 ~~~~~vvQkYI~~p~Li~grKFDiR~yv 147 (204)
...+++||+||. |+-+++.+++
T Consensus 179 ~~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 179 YVPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred hCCCeEEEeccC------CceEEEEEEE
Confidence 245899999995 4555555543
No 20
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.48 E-value=0.0014 Score=51.27 Aligned_cols=39 Identities=41% Similarity=0.790 Sum_probs=17.9
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCCc--cceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPLE--ESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~~--~~~vvQkYI~ 131 (204)
...||+||..|+.|.||.++++.+++... ...++|+||+
T Consensus 31 ~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEESS-------B--SS--TTE-------EEEE---
T ss_pred CCcEEEEeCCCCCCCCeEEECCchhhccccccceEEeeeeC
Confidence 57999999999999999999998876532 2239999997
No 21
>PRK07206 hypothetical protein; Provisional
Probab=96.28 E-value=0.0063 Score=54.34 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=51.7
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL---- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~---- 120 (204)
..+|..+.+.+++. +. -.|+++.+. .++.++.....-.+.+.|+||..|+.|+|+.++++.+++..
T Consensus 106 ~~dK~~~r~~l~~~----gi----~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~ 177 (416)
T PRK07206 106 RRNKAEMINALAEA----GL----PAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNA 177 (416)
T ss_pred hhCHHHHHHHHHHc----CC----CcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 45666666666542 22 257777664 45555554321123499999999999999999999776421
Q ss_pred -----------ccceEEEeccc
Q psy6987 121 -----------EESVVVAKYIE 131 (204)
Q Consensus 121 -----------~~~~vvQkYI~ 131 (204)
...++||+||+
T Consensus 178 ~~~~~~~~~~~~~~~lvEe~i~ 199 (416)
T PRK07206 178 ILGKANKLGLVNETVLVQEYLI 199 (416)
T ss_pred HHhccccCCCCCCeEEEEEccc
Confidence 35799999997
No 22
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=96.19 E-value=0.0056 Score=57.18 Aligned_cols=65 Identities=34% Similarity=0.671 Sum_probs=46.6
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEE-eCCCCCCC--------CccceEEEecccCCcccCCcc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYI-VDTPDEVP--------LEESVVVAKYIEKPLLVEGHK 140 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~-~~~~~~i~--------~~~~~vvQkYI~~p~Li~grK 140 (204)
+|++.... .+..++.... +.-|+||..|+.|+||.+ +++.+++. ....++||+||+ |
T Consensus 312 VP~~~~~~~~~~~~~~~~~~----G~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~------G-- 379 (547)
T TIGR03103 312 VPEQQLAGNGEAVEAFLAEH----GAVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP------G-- 379 (547)
T ss_pred CCCEEEECCHHHHHHHHHHh----CCEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc------C--
Confidence 78777664 3444444433 358999999999999997 77766652 235789999996 2
Q ss_pred eeeEEEEE
Q psy6987 141 CDLRLYVV 148 (204)
Q Consensus 141 FDiR~yvl 148 (204)
.|+|+.|+
T Consensus 380 ~d~Rv~Vi 387 (547)
T TIGR03103 380 EDLRLVVI 387 (547)
T ss_pred CeEEEEEE
Confidence 48998765
No 23
>PRK06849 hypothetical protein; Provisional
Probab=96.11 E-value=0.025 Score=50.26 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=51.4
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---- 119 (204)
.+.+|..+.+.+++. |. =+|+|+.+. .++.++... ....++|+||..++.|.|+.++.+.+.+.
T Consensus 113 ~~~DK~~~~~~~~~~----Gi----pvP~t~~v~~~~~l~~~~~~--~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~ 182 (389)
T PRK06849 113 LLHNKWEFAEQARSL----GL----SVPKTYLITDPEAIRNFMFK--TPHTPYVLKPIYSRFVRRVDLLPKEAALKELPI 182 (389)
T ss_pred HhhCHHHHHHHHHHc----CC----CCCCEEEeCCHHHHHHHhhc--CCCCcEEEEeCcccCCCeEEEecCHHHhccccc
Confidence 356777777766652 22 279998874 343333221 12569999999999999999988754432
Q ss_pred -CccceEEEecccC
Q psy6987 120 -LEESVVVAKYIEK 132 (204)
Q Consensus 120 -~~~~~vvQkYI~~ 132 (204)
...++++|+||+-
T Consensus 183 ~~~~~~ivQe~I~G 196 (389)
T PRK06849 183 SKDNPWVMQEFIQG 196 (389)
T ss_pred CCCCCeEEEEEecC
Confidence 1346999999983
No 24
>PRK08462 biotin carboxylase; Validated
Probab=96.02 E-value=0.0098 Score=53.82 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=34.6
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..|+.|+|+.++++.+++. ....+++|+||+.|
T Consensus 153 ~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 208 (445)
T PRK08462 153 IGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNP 208 (445)
T ss_pred cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCC
Confidence 4569999999999999999999977653 13468999999865
No 25
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.00 E-value=0.01 Score=54.09 Aligned_cols=64 Identities=28% Similarity=0.350 Sum_probs=44.7
Q ss_pred CceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 70 DFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 70 ~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..+|-+.-...+.++.........-+-|+||+.|..|+||+++++.+++. ....+++++||++|
T Consensus 129 P~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 129 PVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 44555532222223444333344579999999999999999999987763 24559999999998
No 26
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=95.88 E-value=0.0069 Score=51.74 Aligned_cols=68 Identities=28% Similarity=0.472 Sum_probs=45.9
Q ss_pred eeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceee
Q psy6987 72 IPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDL 143 (204)
Q Consensus 72 ~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDi 143 (204)
.|+|+.+.... ++........-++|+||..++.|+|+.++.+.+++. ....++||+||+ |+ ++
T Consensus 113 ~p~~~~~~~~~-~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--E~ 183 (304)
T PRK01372 113 TPPWIVLTREE-DLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------GR--EL 183 (304)
T ss_pred CCCEEEEeCcc-hHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------CE--EE
Confidence 67776664321 122222233568999999999999999999977652 146799999997 54 55
Q ss_pred EEEEE
Q psy6987 144 RLYVV 148 (204)
Q Consensus 144 R~yvl 148 (204)
++.++
T Consensus 184 ~v~vi 188 (304)
T PRK01372 184 TVAVL 188 (304)
T ss_pred EEEEE
Confidence 65544
No 27
>PRK14016 cyanophycin synthetase; Provisional
Probab=95.83 E-value=0.01 Score=57.22 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=55.0
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEE-eCCCCCCC------
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYI-VDTPDEVP------ 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~-~~~~~~i~------ 119 (204)
..+|....+.|++. +. =+|++...... ++......+..-+-|+||..|+.|+|+.+ +++.+++.
T Consensus 212 ~~DK~~tk~lL~~~----GI----PvP~~~~v~s~-~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 212 ACDKELTKRLLAAA----GV----PVPEGRVVTSA-EDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred hCCHHHHHHHHHHC----Cc----CCCCeeEeCCH-HHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 45666555555542 21 15666655322 22222223346799999999999999998 88876653
Q ss_pred --CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 --LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 --~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
....++||+||+ | .|+|++|+
T Consensus 283 ~~~~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 283 SKESSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred HHhCCeEEEEEecC------C--ceEEEEEE
Confidence 246899999996 3 48888664
No 28
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=95.72 E-value=0.021 Score=52.76 Aligned_cols=42 Identities=33% Similarity=0.555 Sum_probs=35.0
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..|+.|+||.++++.+++. ....++||+||+.|
T Consensus 151 igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 151 IGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred hCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 3569999999999999999999987652 13578999999865
No 29
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=95.71 E-value=0.022 Score=52.29 Aligned_cols=42 Identities=29% Similarity=0.539 Sum_probs=34.8
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..|+.|+||.++++.+++. ....++|++||+.|
T Consensus 151 igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~ 206 (478)
T PRK08463 151 IGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP 206 (478)
T ss_pred hCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 3568999999999999999999987652 23578999999765
No 30
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=95.61 E-value=0.092 Score=45.84 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=43.1
Q ss_pred EcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChh---HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCC
Q psy6987 38 VNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG---DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDT 114 (204)
Q Consensus 38 vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~---~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~ 114 (204)
+|-=.-...+..|......+++ .+. =+|+|+.+-. ..+.+.. ....-...|+||..|++|+||.++.+
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~----agl----pvP~T~~~~s~~~~~~~l~~-~~~~~~~VVVKPl~Gs~GrGI~~i~~ 96 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQA----AGI----TVPELYGVIHNQAEVKTIHN-IVKDHPDFVIKPAQGSGGKGILVITS 96 (317)
T ss_pred cCCchhccccccHHHHHHHHHH----cCC----CCCCEEEecCchhhHHHHHH-HHccCCCEEEEECCCCCccCeEEEEe
Confidence 3444445556777766555554 121 2699887632 2222222 22223579999999999999999976
Q ss_pred CC
Q psy6987 115 PD 116 (204)
Q Consensus 115 ~~ 116 (204)
.+
T Consensus 97 ~~ 98 (317)
T TIGR02291 97 RK 98 (317)
T ss_pred cc
Confidence 53
No 31
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=95.50 E-value=0.029 Score=50.86 Aligned_cols=42 Identities=40% Similarity=0.673 Sum_probs=34.8
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..++.|+|+.++++.+++. ....++||+||+.+
T Consensus 151 ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (449)
T TIGR00514 151 IGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206 (449)
T ss_pred hCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3568999999999999999999987652 23569999999865
No 32
>PRK02186 argininosuccinate lyase; Provisional
Probab=95.47 E-value=0.033 Score=54.88 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=46.7
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC---------CccceEEEecccCCcccCCcc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP---------LEESVVVAKYIEKPLLVEGHK 140 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---------~~~~~vvQkYI~~p~Li~grK 140 (204)
.|+++.+. .++.++.. ...-++|+||..++.|+|+.++++.+++. ...+++||+||+ |.-
T Consensus 122 ~P~~~~v~~~~e~~~~~~---~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E 192 (887)
T PRK02186 122 VPRTHALALRAVALDALD---GLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDE 192 (887)
T ss_pred CCCEEEeCCHHHHHHHHH---hCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCc
Confidence 57777664 34444432 33568999999999999999999977652 256899999997 444
Q ss_pred eeeEEE
Q psy6987 141 CDLRLY 146 (204)
Q Consensus 141 FDiR~y 146 (204)
|++..+
T Consensus 193 ~sVe~i 198 (887)
T PRK02186 193 YSVETL 198 (887)
T ss_pred EEEEEE
Confidence 555543
No 33
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=95.35 E-value=0.026 Score=51.56 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=34.9
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..|+.|+|+.++++.+++. ....++||+||+.+
T Consensus 154 igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 154 IGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred hCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4569999999999999999999987653 14568999999854
No 34
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.18 E-value=0.016 Score=50.76 Aligned_cols=57 Identities=18% Similarity=0.417 Sum_probs=40.4
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCC------CccceEEEeccc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVP------LEESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~------~~~~~vvQkYI~ 131 (204)
.|+++.+. .++.++.. ...-++|+||..++ .|+|+.++++.+++. ...+++||+||+
T Consensus 113 ~p~~~~~~~~~~~~~~~~---~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 113 VPPFLVIKDEEELDAALQ---ELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCCccEeCCHHHHHHHHH---HcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 46666554 33333332 33569999999875 899999999977653 234899999998
No 35
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.17 E-value=0.027 Score=56.98 Aligned_cols=43 Identities=33% Similarity=0.570 Sum_probs=35.6
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
...-++|+||..|+.|+|+.++++.+++. ....+++|+||+.|
T Consensus 154 ~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 154 EIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred HhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 34579999999999999999999977652 13579999999865
No 36
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.17 E-value=0.044 Score=49.58 Aligned_cols=42 Identities=36% Similarity=0.572 Sum_probs=34.4
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
..-++|+||..++.|+|+.++++.+++.. ...++||+||+.+
T Consensus 151 ~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (451)
T PRK08591 151 IGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206 (451)
T ss_pred cCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 35689999999999999999999776531 3568999999854
No 37
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=95.04 E-value=0.017 Score=50.84 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=40.9
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC------------ccceEEEeccc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL------------EESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~------------~~~~vvQkYI~ 131 (204)
.|+++.+. .++.++.. ...-+.|+||..++.|+|+.++++.+++.. ..+++||+||+
T Consensus 116 ~p~~~~~~~~~~~~~~~~---~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 116 TSRYMFADSLDELREAVE---KIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCCceEeCCHHHHHHHHH---HcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 55555553 23333332 345699999999999999999999876521 35799999997
No 38
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=94.92 E-value=0.057 Score=53.18 Aligned_cols=83 Identities=31% Similarity=0.447 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEE-eCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYI-VDTPDEVP---- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~-~~~~~~i~---- 119 (204)
..+|....+.|++ .+. =+|++..+. .++.++.. ....+.++||..++.|+|+.+ +++.+++.
T Consensus 211 a~DK~~tk~lL~~----~GI----pvP~~~~~~s~~ea~~~~~---~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~ 279 (864)
T TIGR02068 211 ACDKDLTKEILSD----AGV----PVPEGTVVQSAEDAWEAAQ---DLGYPVVIKPYDGNHGRGVTINILTRDEIESAYE 279 (864)
T ss_pred HcCHHHHHHHHHH----cCc----CCCCEEEECCHHHHHHHHH---HcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHH
Confidence 4555555555554 222 167776653 33333333 335689999999999999998 88876653
Q ss_pred ----CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 ----LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 ----~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
....++||+||+ | -|+|++|+
T Consensus 280 ~a~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 280 AAVEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred HHHhhCCcEEEEEecc------C--CEEEEEEE
Confidence 145799999995 4 37787664
No 39
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=94.89 E-value=0.06 Score=52.21 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=36.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCC---CC--------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDE---VP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~---i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
..+.|+||..|+.|+||.++.+... +. ....++||+||. |+ |+|+.|+
T Consensus 524 g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 524 DKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred CCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------CC--EEEEEEE
Confidence 4589999999999999999865332 21 245799999995 43 8888665
No 40
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=94.81 E-value=0.047 Score=48.97 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCc-EEEcCCCCCCCCceEEeCCCCCCCC---
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGP-WIVKPVASSRGRGIYIVDTPDEVPL--- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~-wI~KP~~~~rG~GI~~~~~~~~i~~--- 120 (204)
..+|..+.+.++++ +. . .|++..+ +.++.++.. ...-+ +|+||..++.|+|+.++++.+++..
T Consensus 102 ~~dK~~~k~~l~~~----gI--p--~p~~~~~~~~~~~~~~~~---~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~ 170 (423)
T TIGR00877 102 EGSKAFAKDFMKRY----GI--P--TAEYEVFTDPEEALSYIQ---EKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVE 170 (423)
T ss_pred HCCHHHHHHHHHHC----CC--C--CCCeEEECCHHHHHHHHH---hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHH
Confidence 45666666655542 21 1 4554444 234444443 23457 9999999999999999999766421
Q ss_pred ----------ccceEEEeccc
Q psy6987 121 ----------EESVVVAKYIE 131 (204)
Q Consensus 121 ----------~~~~vvQkYI~ 131 (204)
...++||+||+
T Consensus 171 ~~~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 171 EILEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred HHHHHhcCCCCCeEEEEECcc
Confidence 24799999987
No 41
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=94.78 E-value=0.046 Score=50.06 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=34.7
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
...-+.|+||..|+.|+|+.++++.+++.. ....++++||+.|
T Consensus 149 ~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 149 RIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred HcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 345799999999999999999999877631 3468899998755
No 42
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=94.73 E-value=0.073 Score=47.78 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC-----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----- 119 (204)
..+|..+.+.|++. + .. .|++..+. .++.++.. ...-+.|+||..++.|+|+.++.+.+++.
T Consensus 100 ~~dK~~~k~~l~~~----g--ip--~p~~~~~~~~~~~~~~~~---~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~ 168 (420)
T PRK00885 100 EGSKAFAKDFMARY----G--IP--TAAYETFTDAEEALAYLD---EKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDD 168 (420)
T ss_pred HcCHHHHHHHHHHc----C--CC--CCCeEEeCCHHHHHHHHH---HcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHH
Confidence 34555555555541 2 11 56655553 34444443 23568999999999999999999976542
Q ss_pred ---------CccceEEEecccC
Q psy6987 120 ---------LEESVVVAKYIEK 132 (204)
Q Consensus 120 ---------~~~~~vvQkYI~~ 132 (204)
....++||+||+-
T Consensus 169 ~~~~~~~~~~~~~vlvEe~i~G 190 (420)
T PRK00885 169 MLAGNKFGDAGARVVIEEFLDG 190 (420)
T ss_pred HhhcccccCCCCeEEEEEccCC
Confidence 1357999999973
No 43
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.71 E-value=0.059 Score=54.48 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=35.5
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
...-++|+||..|+.|+|+.++++.+++. .....+||+||+.|
T Consensus 150 ~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~ 206 (1143)
T TIGR01235 150 AIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP 206 (1143)
T ss_pred HcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC
Confidence 34568999999999999999999977652 23578999999876
No 44
>PRK05586 biotin carboxylase; Validated
Probab=94.56 E-value=0.058 Score=48.95 Aligned_cols=42 Identities=38% Similarity=0.612 Sum_probs=34.7
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
..-+.|+||..|+.|+|+.++++.+++.. ...++||+||+.+
T Consensus 151 igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~ 206 (447)
T PRK05586 151 IGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206 (447)
T ss_pred cCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 35689999999999999999999877521 3578999999854
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=94.41 E-value=0.1 Score=52.54 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=46.7
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCCcccCCc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKPLLVEGH 139 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p~Li~gr 139 (204)
.|+++.+. .++.++.. ...-++|+||..+..|+|+.++.+.+++. ...+++||+||+. |+
T Consensus 684 ~P~~~~v~s~ee~~~~~~---~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-----G~ 755 (1050)
T TIGR01369 684 QPKWKTATSVEEAVEFAS---EIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-----AV 755 (1050)
T ss_pred CCCeEEECCHHHHHHHHH---hcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-----Ce
Confidence 57776653 33333332 34568999999999999999999977653 2457999999984 45
Q ss_pred ceeeEE
Q psy6987 140 KCDLRL 145 (204)
Q Consensus 140 KFDiR~ 145 (204)
-+++.+
T Consensus 756 E~~Vd~ 761 (1050)
T TIGR01369 756 EVDVDA 761 (1050)
T ss_pred EEEEEE
Confidence 555544
No 46
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=94.30 E-value=0.13 Score=45.09 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=52.0
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHh---CCCCcEEEcCCCCCCCCceEEeCC-CCCC---
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHY---RTRGPWIVKPVASSRGRGIYIVDT-PDEV--- 118 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~---~~~~~wI~KP~~~~rG~GI~~~~~-~~~i--- 118 (204)
.+..|..++..+++ .+ . -+|.++...+ .++|..+.. .....-++||..|..|+|..++.. .+++
T Consensus 104 ~~~dK~~~y~~~~~----~~--i--pvp~~~~v~t-~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l 174 (329)
T PF15632_consen 104 LADDKAAFYEFMEA----NG--I--PVPPYWRVRT-ADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDAL 174 (329)
T ss_pred HHhhHHHHHHHHHh----CC--C--CCCCEEEeCC-HHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHh
Confidence 35667777776665 12 2 4778777643 234444333 345679999999999999999984 3322
Q ss_pred C--------------------CccceEEEecccCC
Q psy6987 119 P--------------------LEESVVVAKYIEKP 133 (204)
Q Consensus 119 ~--------------------~~~~~vvQkYI~~p 133 (204)
. ...+++|++|++-|
T Consensus 175 ~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 175 FEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred cCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCC
Confidence 1 24678999988755
No 47
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.16 E-value=0.038 Score=48.95 Aligned_cols=40 Identities=35% Similarity=0.670 Sum_probs=33.5
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC------------ccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL------------EESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~------------~~~~vvQkYI~ 131 (204)
..-+.|+||..++.|+|+.++++.+++.. ..++|||+||+
T Consensus 148 ~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 148 IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 35699999999999999999999776521 25799999997
No 48
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=94.15 E-value=0.33 Score=41.62 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=72.9
Q ss_pred cccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccC------hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEe
Q psy6987 39 NHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM------PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIV 112 (204)
Q Consensus 39 Nh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l------~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~ 112 (204)
|.-.....+..|-.+.+.+.++--... ...--.+..|.. ..++.+++..+ .....++||..|++|+||.++
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP-~~i~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~viKP~~G~~G~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVP-EAIFNVGRDYFDLREQHSIEDLEEFLRKH--APDRFVIKPANGSGGKGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCC-ceEEeccceEEecccccCHHHHHHHHHhc--cCCcEEEEeCCCCCccCEEEE
Confidence 555556678888888887766411001 000012222222 23455555422 247899999999999999998
Q ss_pred CCCCC--C-----------CCcc--ceEEEecccCCcccC----CcceeeEEEEEEeccCCeEEEEecccEEeec
Q psy6987 113 DTPDE--V-----------PLEE--SVVVAKYIEKPLLVE----GHKCDLRLYVVVTSYDPLIIYMYEEGLVRFA 168 (204)
Q Consensus 113 ~~~~~--i-----------~~~~--~~vvQkYI~~p~Li~----grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~ 168 (204)
...+. + .... .+|+|++|+.--.+. .-=-+||+.+++....|..+ .+++|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~----~a~lRlg 163 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVL----MAMLRLG 163 (285)
T ss_pred EeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEE----EEEEEeC
Confidence 76552 1 0122 899999998443332 34469999888766322222 4566765
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=94.09 E-value=0.087 Score=47.55 Aligned_cols=42 Identities=31% Similarity=0.505 Sum_probs=34.6
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
..-++|+||..++.|+|+.++++.+++. ...+++||+||+.+
T Consensus 151 ~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~ 206 (450)
T PRK06111 151 IGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP 206 (450)
T ss_pred hCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC
Confidence 3568999999999999999999977652 23478999999854
No 50
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=94.08 E-value=0.025 Score=48.36 Aligned_cols=51 Identities=27% Similarity=0.514 Sum_probs=39.6
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
..-+||+||..++.|.|+.++.+.+++. ....++||+||+ |+ ++++-++..
T Consensus 124 l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~ 182 (299)
T PRK14571 124 LGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILET 182 (299)
T ss_pred cCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcC
Confidence 3568999999999999999999977652 245789999996 44 666666654
No 51
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=93.94 E-value=0.048 Score=46.75 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=39.2
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
..-++|+||..++.|.||.++.+.+++. ...+++||+||+ |+ ++++.++.
T Consensus 145 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--e~~v~vi~ 202 (315)
T TIGR01205 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------GR--ELEVSILG 202 (315)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------CE--EEEEEEEC
Confidence 3569999999999999999999977653 246799999984 54 66666664
No 52
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=93.82 E-value=0.27 Score=43.78 Aligned_cols=49 Identities=29% Similarity=0.467 Sum_probs=37.9
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCCcccCCcceeeEEE
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKPLLVEGHKCDLRLY 146 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p~Li~grKFDiR~y 146 (204)
..-+.++||..++.|+|+.++.+.+++. ....++||+||+ |+-+.+.++
T Consensus 101 ~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~ 159 (379)
T PRK13790 101 CELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTF 159 (379)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEE
Confidence 4569999999999999999999977642 134789999986 455665554
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.75 E-value=0.11 Score=52.40 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=43.1
Q ss_pred eeccccChh--HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCC
Q psy6987 72 IPSTFVMPG--DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf~l~~--~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p 133 (204)
.|+++.+.. ++.++.. ...-++|+||..++.|+|+.++.+.+++. ...+++||+||+.+
T Consensus 684 ~P~~~~~~s~ee~~~~~~---~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 684 QPPNGTATSVEEALEVAE---EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA 754 (1066)
T ss_pred CCCeEEECCHHHHHHHHH---hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC
Confidence 566666532 3333332 34568999999999999999999977653 24579999999865
No 54
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=93.62 E-value=0.17 Score=48.87 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=36.7
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCC---CCC--------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPD---EVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~---~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
..+.++||.+++.|+||.++.+.. ++. ....++||+||+ | -|+|+.|+
T Consensus 511 g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G--~EyRv~VI 569 (737)
T TIGR01435 511 NKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------G--TEYRFFVL 569 (737)
T ss_pred CCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------C--CEEEEEEE
Confidence 357999999999999999987742 221 245799999996 4 38888766
No 55
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=93.54 E-value=0.039 Score=48.13 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
..-+||+||..+..|.||.++++.+++. ....++||+||+
T Consensus 161 ~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~ 208 (333)
T PRK01966 161 LGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK 208 (333)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC
Confidence 3568999999999999999999987653 246899999998
No 56
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=93.44 E-value=0.082 Score=46.43 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
..-++|+||..++.+.||.++++.+++. ....++||+||+
T Consensus 170 l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~ 217 (347)
T PRK14572 170 LGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS 217 (347)
T ss_pred cCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 3569999999999999999999977653 246789999986
No 57
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.45 Score=43.14 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=84.4
Q ss_pred EEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCC
Q psy6987 37 RVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDT 114 (204)
Q Consensus 37 ~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~ 114 (204)
.+-.=||+..+..|..+.-.=+-.+...++...=--+.||.. |.+++..+.. -.--++||..++.|-|..+-..
T Consensus 311 tiaNA~GtGV~ddka~~~y~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~----l~~lViK~~~~~gg~~~lvGpa 386 (488)
T COG2308 311 TIANALGTGVADDKALYAYVPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLAN----LSELVIKPVEGSGGYGMLVGPA 386 (488)
T ss_pred EEecCCCcCcccchhHHHHHHHHHHHHcccccccCCCCeeecCCHHHHHHHHhc----hhhheEeeeccCCCCcceeccc
Confidence 344568999999998766432222223233222223347776 5565555542 2458899999998888887665
Q ss_pred CCCC----------CCccceEEEecc---cCCcccCC----cceeeEEEEEEeccCCeEEEEecccEEeecCC
Q psy6987 115 PDEV----------PLEESVVVAKYI---EKPLLVEG----HKCDLRLYVVVTSYDPLIIYMYEEGLVRFATV 170 (204)
Q Consensus 115 ~~~i----------~~~~~~vvQkYI---~~p~Li~g----rKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~ 170 (204)
..+- .....||.|+-+ +.|..++| |-.|+|.|++.+.. .+++-..|+.|++..
T Consensus 387 ~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~~---~~~v~pGGLtRVal~ 456 (488)
T COG2308 387 ASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADRD---GVQVMPGGLTRVALR 456 (488)
T ss_pred cCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcCC---ceEEcccceeeeeec
Confidence 5432 136788999855 35666665 67899999998774 367788999999876
No 58
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.25 E-value=0.071 Score=47.24 Aligned_cols=41 Identities=10% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCcEEEcCCCC-CCCCceEEeCCCCCCC------CccceEEEeccc
Q psy6987 91 RTRGPWIVKPVAS-SRGRGIYIVDTPDEVP------LEESVVVAKYIE 131 (204)
Q Consensus 91 ~~~~~wI~KP~~~-~rG~GI~~~~~~~~i~------~~~~~vvQkYI~ 131 (204)
...-++|+||..+ +.|+|+.++++.+++. ...+++||+||+
T Consensus 133 ~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 133 DLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred HcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 3456999999975 6899999999977653 246899999998
No 59
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=93.24 E-value=0.075 Score=47.15 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=38.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC-------------CccceEEEecccCCcccCCcceeeEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP-------------LEESVVVAKYIEKPLLVEGHKCDLRLYV 147 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~-------------~~~~~vvQkYI~~p~Li~grKFDiR~yv 147 (204)
+.+.|+||..++.|+|++++++.+++. ..+.++||+||. |..|.+-+++
T Consensus 149 ~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~ 210 (358)
T PRK13278 149 DRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFY 210 (358)
T ss_pred CCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEE
Confidence 358999999999999999999976542 147899999998 5556665554
No 60
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=92.85 E-value=0.16 Score=46.07 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=30.1
Q ss_pred CCcEEEcCCCCCCCCceEEeCCC----CCC--------CCccceEEEecccC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTP----DEV--------PLEESVVVAKYIEK 132 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~----~~i--------~~~~~~vvQkYI~~ 132 (204)
.-+.++||..++.|+|+.++.+. ++. ......|||+||+-
T Consensus 141 ~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G 192 (435)
T PRK06395 141 MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTG 192 (435)
T ss_pred CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCC
Confidence 56899999999999999999532 111 12356899999974
No 61
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=92.76 E-value=0.075 Score=45.57 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC-------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP-------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~-------~~~~~vvQkYI~ 131 (204)
..-++|+||..++.|.|+.++.+.+++. ...+++||+||+
T Consensus 129 ~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~ 175 (296)
T PRK14569 129 ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT 175 (296)
T ss_pred cCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc
Confidence 3468999999999999999999987763 235789999995
No 62
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=92.66 E-value=0.054 Score=47.45 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC--------ccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL--------EESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------~~~~vvQkYI~ 131 (204)
.-++|+||..+..+.||.++++.+++.. ....+||+||+
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 211 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV 211 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC
Confidence 4689999999999999999999877631 45789999986
No 63
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=92.47 E-value=0.29 Score=49.33 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=41.3
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
.|+++.+. .++.++. ....-++|+||..+..|+|+.++.+.+++. ...+++||+||+
T Consensus 685 ~P~~~~~~s~ee~~~~~---~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~ 751 (1068)
T PRK12815 685 HVPGLTATDEEEAFAFA---KRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID 751 (1068)
T ss_pred CCCeEEeCCHHHHHHHH---HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 56666553 2333333 234579999999999999999999976652 356799999995
No 64
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=91.99 E-value=0.15 Score=41.78 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCCc
Q psy6987 80 GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKPL 134 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p~ 134 (204)
.+..++... ..-+.++||+.+.+|+|+.++.+.+++. ...+.++.+||+++-
T Consensus 28 eea~~~a~~---iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~r 93 (211)
T PF02786_consen 28 EEALEFAEE---IGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAR 93 (211)
T ss_dssp HHHHHHHHH---H-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEE
T ss_pred HHHHHHHHh---cCCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhh
Confidence 344444443 3568999999999999999999988763 257899999999774
No 65
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=91.82 E-value=0.12 Score=43.73 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=28.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCCccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~~~~~vvQkYI~ 131 (204)
.+.+|+||..|++|.||.+..+..++ .|+|+||+
T Consensus 138 ~~k~ViKp~dgCgge~i~~~~~~pd~-----~i~qEfIe 171 (307)
T COG1821 138 PKKYVIKPADGCGGEGILFGRDFPDI-----EIAQEFIE 171 (307)
T ss_pred CceEEecccccCCcceeeccCCCcch-----hhHHHhcC
Confidence 57899999999999999998886654 57777776
No 66
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=91.35 E-value=0.36 Score=49.26 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=34.9
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
...-++|+||..++.|+|+.++++.+++. ....++||+||+.+
T Consensus 148 ~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~ 204 (1201)
T TIGR02712 148 EIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA 204 (1201)
T ss_pred hcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 34569999999999999999999987653 13468999999753
No 67
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=90.99 E-value=0.21 Score=44.37 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCcEEEcCCCCCC--CCceEEeCCCCCCC---------------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSR--GRGIYIVDTPDEVP---------------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~r--G~GI~~~~~~~~i~---------------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
+.+.|+||..+++ |+|++++++.+++. ....+++|+||. |.-|.+-+|+-
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~s 218 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFYS 218 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEEe
Confidence 4689999999999 99999999976542 124567999997 66677766643
No 68
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=90.59 E-value=1.4 Score=41.82 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=40.2
Q ss_pred CcEEEcCCCCCCCCceEEeCCCCCCC-------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 94 GPWIVKPVASSRGRGIYIVDTPDEVP-------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 94 ~~wI~KP~~~~rG~GI~~~~~~~~i~-------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
..|+.||..|-.|.+|.++.....+. ..+.+|.|+|++-| .++|...-|..|++
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFTV 588 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEEE
Confidence 35999999999999999997622221 35788999999977 56665555555555
No 69
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=90.28 E-value=0.14 Score=41.61 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=35.9
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEE
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRL 145 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~ 145 (204)
..-++|+||..+.-+.||..+++.+++. -.++.+|++||. |+-|-+-+
T Consensus 32 l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~v 87 (203)
T PF07478_consen 32 LGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVGV 87 (203)
T ss_dssp HSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEEE
T ss_pred cCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEEE
Confidence 3569999999999999999999977653 257899999985 66555543
No 70
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=88.86 E-value=0.92 Score=40.86 Aligned_cols=53 Identities=28% Similarity=0.375 Sum_probs=40.8
Q ss_pred cEEEcCCCCCCCCceEEeCCCCCCC------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 95 PWIVKPVASSRGRGIYIVDTPDEVP------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 95 ~wI~KP~~~~rG~GI~~~~~~~~i~------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
.|+.||..|--|.+|.++..-..+. ..+.+|.|+|++-| .++|+-.-|.+|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 5999999999999999997633222 25789999999977 56777555566655
No 71
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=88.12 E-value=0.84 Score=46.08 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----------ccceEEEecccC
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL----------EESVVVAKYIEK 132 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~----------~~~~vvQkYI~~ 132 (204)
+|+++.+. .++.++.. ...-+.|+||..|..|+|+.++++.+++.. ..+++||+||+-
T Consensus 143 vp~~~~v~s~~e~~~~~~---~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 143 VPRSGIAHSMEEALEVAE---EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred CCCeeeeCCHHHHHHHHH---HcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 56666664 33333332 334689999999999999999999877531 357899999984
No 72
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=88.06 E-value=1.3 Score=40.19 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEK 132 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~ 132 (204)
..-+.|+||..++.|+|+.++++.+++.. ...+|||+||+-
T Consensus 142 ~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G 196 (426)
T PRK13789 142 EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG 196 (426)
T ss_pred cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC
Confidence 35699999999999999999999765421 237899999983
No 73
>PLN02257 phosphoribosylamine--glycine ligase
Probab=88.03 E-value=1.8 Score=39.41 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccC
Q psy6987 80 GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEK 132 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~ 132 (204)
.++.+++. ...-+.|+||..++.|+|+.++++.+++. ....++|++||+-
T Consensus 127 ~e~~~~~~---~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G 190 (434)
T PLN02257 127 AAAKKYIK---EQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG 190 (434)
T ss_pred HHHHHHHH---HcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC
Confidence 44444443 23458999999999999999999976642 1257899999984
No 74
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=88.00 E-value=0.69 Score=46.62 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=41.9
Q ss_pred eeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----------ccceEEEecccCC
Q psy6987 72 IPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL----------EESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~----------~~~~vvQkYI~~p 133 (204)
+|++..+... ++.........-+.|+||..+..|+|+.++++.+++.. ..+++||+||.-+
T Consensus 142 vp~~~~v~s~-~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 142 VPESEIAHSV-EEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGW 212 (1050)
T ss_pred CCCeeecCCH-HHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCc
Confidence 4555555332 22222222335689999999999999999999877531 2579999999854
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=87.83 E-value=0.85 Score=42.13 Aligned_cols=40 Identities=18% Similarity=0.423 Sum_probs=31.7
Q ss_pred CcEEEcCCCCCCCCceEEeCCCCCCC------------------------CccceEEEecccCC
Q psy6987 94 GPWIVKPVASSRGRGIYIVDTPDEVP------------------------LEESVVVAKYIEKP 133 (204)
Q Consensus 94 ~~wI~KP~~~~rG~GI~~~~~~~~i~------------------------~~~~~vvQkYI~~p 133 (204)
.+.|+||+.++.|+|+.++.+.+++. ....+|||+||+-+
T Consensus 145 ~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~ 208 (486)
T PRK05784 145 GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGV 208 (486)
T ss_pred CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCe
Confidence 48999999999999999999865210 13578999999843
No 76
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=86.70 E-value=0.31 Score=43.21 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=33.0
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC--------ccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL--------EESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------~~~~vvQkYI~ 131 (204)
..-+.|+||..+..|.||.++++.+++.. ....+||+||+
T Consensus 170 lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~ 217 (364)
T PRK14570 170 LGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE 217 (364)
T ss_pred cCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC
Confidence 35699999999888999999999776532 35689999997
No 77
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=84.70 E-value=3.3 Score=32.90 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhCCCCcEEEc-CCCCCCCCceEEeCCCCCCC------CccceEEEecccCCcccCCcceeeEEEEEEe-c
Q psy6987 80 GDFRELTISHYRTRGPWIVK-PVASSRGRGIYIVDTPDEVP------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT-S 151 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~wI~K-P~~~~rG~GI~~~~~~~~i~------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~-s 151 (204)
+|+.+..... .-+.|+| +..|..|+|..++++.+++. ...++|+.++|+ |+--+=+++. +
T Consensus 18 ~~l~~a~~~i---G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~---------f~~EiSvivaR~ 85 (172)
T PF02222_consen 18 EDLEEAAESI---GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP---------FDREISVIVARD 85 (172)
T ss_dssp HHHHHHHHHH---TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE------------ESEEEEEEEEEE
T ss_pred HHHHHHHHHc---CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC---------CcEEEEEEEEEc
Confidence 3554544433 5689999 77899999999999988764 478899999998 3333322221 1
Q ss_pred cC------CeEEEEecccEEeecCCCCCC
Q psy6987 152 YD------PLIIYMYEEGLVRFATVKYDS 174 (204)
Q Consensus 152 ~~------pl~~y~~~~g~~r~~~~~y~~ 174 (204)
.+ |+.--++++|.++.+..|-..
T Consensus 86 ~~G~~~~yp~~en~~~~~il~~s~~Pa~i 114 (172)
T PF02222_consen 86 QDGEIRFYPPVENVHRDGILHESIAPARI 114 (172)
T ss_dssp TTSEEEEEEEEEEEEETTEEEEEEESCSS
T ss_pred CCCCEEEEcCceEEEECCEEEEEECCCCC
Confidence 11 333336789999998877654
No 78
>PLN02735 carbamoyl-phosphate synthase
Probab=82.79 E-value=1.2 Score=45.17 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=34.5
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccC
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEK 132 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~ 132 (204)
...-+.|+||..+..|+|+.++.+.+++. ...+.+||+||+.
T Consensus 735 ~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~ 786 (1102)
T PLN02735 735 RIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD 786 (1102)
T ss_pred hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 34568999999999999999999987763 2346899999974
No 79
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=81.14 E-value=2.4 Score=39.84 Aligned_cols=92 Identities=24% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCCccccchHHHHHHHHH---------------HHhh------cCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcC
Q psy6987 42 PRSYELTRKDRLYKNIEK---------------MQHS------KGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKP 100 (204)
Q Consensus 42 p~~~~l~~K~~l~~~l~~---------------~~~~------~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP 100 (204)
||...|+--..++..+.+ |-.+ ....-...+|=+--.-.+..++........-+-++|.
T Consensus 80 PGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKA 159 (645)
T COG4770 80 PGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKA 159 (645)
T ss_pred CCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEe
Confidence 777777777777765443 1000 0001123344433332333333333334566899999
Q ss_pred CCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 101 VASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 101 ~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
+.|..|+|++++.+.+++. ..+..+|-||+++|
T Consensus 160 saGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P 206 (645)
T COG4770 160 SAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP 206 (645)
T ss_pred ccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC
Confidence 9999999999999987763 36788999999999
No 80
>PRK06524 biotin carboxylase-like protein; Validated
Probab=80.68 E-value=1.8 Score=40.14 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC-------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP-------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~-------~~~~~vvQkYI~ 131 (204)
..-+-++||..|+.|+|+.++++.+++. .....+||+||.
T Consensus 180 IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~ 226 (493)
T PRK06524 180 LGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR 226 (493)
T ss_pred CCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC
Confidence 4568999999999999999999987753 234678999875
No 81
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=80.41 E-value=1.5 Score=41.42 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCCcEEEcCCCCC-CCCceEEeCCCCCCCC--------ccceEEEeccc
Q psy6987 92 TRGPWIVKPVASS-RGRGIYIVDTPDEVPL--------EESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~-rG~GI~~~~~~~~i~~--------~~~~vvQkYI~ 131 (204)
..-+.|+||..++ .|+|+.++++.+++.. ..+++|++||+
T Consensus 155 ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~ 203 (577)
T PLN02948 155 FGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP 203 (577)
T ss_pred cCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC
Confidence 3568999998765 7999999999777531 35789999986
No 82
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=80.27 E-value=3 Score=37.00 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=47.5
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------ 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------ 119 (204)
++++|..|..+=+.+ +++...+|..|- |.+-. +....|+.||..|-.|.+|.++.+.....
T Consensus 262 ilsNK~lLplLW~~f-----PnHp~LL~t~F~-~~~~~-------~~~~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~ 328 (387)
T COG0754 262 ILSNKALLPLLWERF-----PNHPNLLPTYFE-PDDEE-------KLGESYVRKPLFGREGANVSIFEDAGKVLDKADGP 328 (387)
T ss_pred HhccccHHHHHHHhC-----CCCcccccccCC-CCccc-------cchhhhhccccccccCCCeeEEecCCceeecCCCC
Confidence 467777666554442 233334444333 22211 11234999999999999999998744432
Q ss_pred -CccceEEEecccCC
Q psy6987 120 -LEESVVVAKYIEKP 133 (204)
Q Consensus 120 -~~~~~vvQkYI~~p 133 (204)
..+.+|.|+|.+-|
T Consensus 329 Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 329 YGEEGMIYQEFYPLP 343 (387)
T ss_pred ccccchhhhhhccCc
Confidence 36789999999977
No 83
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=80.21 E-value=1.2 Score=43.42 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=48.2
Q ss_pred CceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCCc
Q psy6987 70 DFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKPL 134 (204)
Q Consensus 70 ~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p~ 134 (204)
.-+|-|=-.+..+++.........-+.|+|-+.|.+|+|+.++++.+++. ..+...|-|||+||-
T Consensus 135 Pvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 135 PVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred CccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 45666655555455544433344669999999999999999999987763 257888999999995
No 84
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=80.03 E-value=1.6 Score=44.18 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=41.6
Q ss_pred eeccccChh--HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----------ccceEEEecccC
Q psy6987 72 IPSTFVMPG--DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL----------EESVVVAKYIEK 132 (204)
Q Consensus 72 ~P~Tf~l~~--~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~----------~~~~vvQkYI~~ 132 (204)
+|+++.+.. ++.++.. ...-+.|+||..+..|+|+.++++.+++.. ..+++||+||.-
T Consensus 143 vp~~~~v~s~ee~~~~~~---~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G 212 (1068)
T PRK12815 143 VPESEIVTSVEEALAFAE---KIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAG 212 (1068)
T ss_pred CCCceeeCCHHHHHHHHH---HcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 566666642 3333332 335689999999999999999999776531 357899999974
No 85
>KOG0238|consensus
Probab=79.04 E-value=2.4 Score=39.44 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCcEEcccCCCccccchHHHHHHHHHHHh---------------h------cCCCCCCceeccccChhHHHHHHHHHhC
Q psy6987 33 APHQRVNHFPRSYELTRKDRLYKNIEKMQH---------------S------KGFKHFDFIPSTFVMPGDFRELTISHYR 91 (204)
Q Consensus 33 ~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~---------------~------~~~~~~~~~P~Tf~l~~~~~~~~~~~~~ 91 (204)
+..|.| .||...|+--..++..+++--. + ....-...+|-.--+.++.++......+
T Consensus 69 tgaqai--hPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~e 146 (670)
T KOG0238|consen 69 TGAQAI--HPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVARE 146 (670)
T ss_pred cCCcee--cCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHh
Confidence 345544 5999988888888875543100 0 0000112233222222222233333334
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCCc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKPL 134 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p~ 134 (204)
..-+-++|++.|..|+|+.+..+.+++. ..+..++-|||+||=
T Consensus 147 IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 147 IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 5668999999999999999999987763 257789999999994
No 86
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=78.37 E-value=4.1 Score=35.77 Aligned_cols=65 Identities=26% Similarity=0.511 Sum_probs=49.6
Q ss_pred ccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------------CccceEEEecccCCcccCCcceee
Q psy6987 76 FVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------------LEESVVVAKYIEKPLLVEGHKCDL 143 (204)
Q Consensus 76 f~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------------~~~~~vvQkYI~~p~Li~grKFDi 143 (204)
|.+-..+++|...-.+..-+-++||..++-|+|-.++++++++. .....||-.+|+ ||+
T Consensus 132 Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---------fd~ 202 (394)
T COG0027 132 YRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---------FDF 202 (394)
T ss_pred ccccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEec---------ceE
Confidence 33333445555555566778999999999999999999999874 256788888887 999
Q ss_pred EEEEEE
Q psy6987 144 RLYVVV 149 (204)
Q Consensus 144 R~yvlv 149 (204)
-+-+|.
T Consensus 203 EiTlLt 208 (394)
T COG0027 203 EITLLT 208 (394)
T ss_pred EEEEEE
Confidence 887764
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=77.84 E-value=5.1 Score=32.57 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=36.9
Q ss_pred cccChhHHHHHHHHHhCCCCc-EEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEeccc
Q psy6987 75 TFVMPGDFRELTISHYRTRGP-WIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIE 131 (204)
Q Consensus 75 Tf~l~~~~~~~~~~~~~~~~~-wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~ 131 (204)
+|.=+.+..+++..+ ... .++||+..+.|+|+.++.+.++.. .....||++|++
T Consensus 22 ~f~~~~~A~~~l~~~---~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 22 VFTDYEEALEYLEEQ---GYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp EESSHHHHHHHHHHH---SSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred EECCHHHHHHHHHhc---CCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 344356777777765 334 499999999999999999854321 256889999887
No 88
>KOG0369|consensus
Probab=75.78 E-value=2.2 Score=41.04 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCCcc
Q psy6987 81 DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKPLL 135 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p~L 135 (204)
|..+|...+ .-+.|+|...|..|+|+.++++.+++. .++...|-++|++|--
T Consensus 175 EA~eF~k~y---G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrH 240 (1176)
T KOG0369|consen 175 EALEFVKEY---GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRH 240 (1176)
T ss_pred HHHHHHHhc---CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcce
Confidence 444555544 458999999999999999999988763 3678899999998853
No 89
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=75.56 E-value=0.54 Score=38.22 Aligned_cols=111 Identities=20% Similarity=0.328 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----
Q psy6987 45 YELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL---- 120 (204)
Q Consensus 45 ~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~---- 120 (204)
+.++.|--++..|.+.++..|...+..+++||.=.-. +++ ...+-+.++|=...++|-|-..+++..+...
T Consensus 7 ynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~--em~---s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sl 81 (203)
T PF02750_consen 7 YNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHR--EML---SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASL 81 (203)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGG--GGC---S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChh--hhc---cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHH
Confidence 3467888888888888888788889999999874321 222 1245689999998999999999998765431
Q ss_pred ---ccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEEEecccEEeec-CCCCCCC
Q psy6987 121 ---EESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFA-TVKYDSG 175 (204)
Q Consensus 121 ---~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~-~~~y~~~ 175 (204)
...|+.-+ |+. ..|+|||+--+=.. + ..+.|.+ +..|..+
T Consensus 82 l~~~~~Y~T~E----PfI--d~kyDirvqkIG~~---y------kA~~R~sis~nWK~N 125 (203)
T PF02750_consen 82 LAITKDYATTE----PFI--DAKYDIRVQKIGNN---Y------KAYMRTSISGNWKAN 125 (203)
T ss_dssp HHHHTS-EEEE----E-----EEEEEEEEEETTE---E------EEEEEEESSSTSSTT
T ss_pred HHhcCceEEee----ccc--cceeEEEEEEEcCe---E------EEEEEcccccccccc
Confidence 23333222 432 57899998433111 1 3456766 4455443
No 90
>PLN02735 carbamoyl-phosphate synthase
Probab=74.51 E-value=2.5 Score=43.02 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=32.7
Q ss_pred CcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccC
Q psy6987 94 GPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEK 132 (204)
Q Consensus 94 ~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~ 132 (204)
-+.|+||..++.|+|+.++.+.+++. ...+.+|++||.-
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG 229 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 58999999999999999999987653 2457899999884
No 91
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=71.89 E-value=3.3 Score=36.50 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=30.6
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCCccceEEEecccCCcccCCcceeeE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVEGHKCDLR 144 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~~~~~vvQkYI~~p~Li~grKFDiR 144 (204)
..+.|+||..|++|. +.++.--+++. ...+|.|+||+ |+.+.+-
T Consensus 149 ekt~IlKPv~GaGG~-~el~~~~Ee~~-~~~~i~Qefi~------G~p~Svs 192 (389)
T COG2232 149 EKTLILKPVSGAGGL-VELVKFDEEDP-PPGFIFQEFIE------GRPVSVS 192 (389)
T ss_pred ceeeEEeeccCCCce-eeecccccccC-CcceehhhhcC------CceeEEE
Confidence 357999999988885 44444434443 48899999987 6655543
No 92
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=70.22 E-value=7.7 Score=33.88 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=33.3
Q ss_pred ceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCC--------CC----------CCccceEEEeccc
Q psy6987 71 FIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPD--------EV----------PLEESVVVAKYIE 131 (204)
Q Consensus 71 ~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~--------~i----------~~~~~~vvQkYI~ 131 (204)
-+|+||.+..+.+..... ..-+-|+||.+|. |...+...+ ++ ..++..|||++|.
T Consensus 128 ~~P~Ty~v~S~~d~~~~e---l~FPvILKP~mgg---~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 128 PYPKTYLVNSEIDTLVDE---LTFPVILKPGMGG---SVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred CCcceEEecchhhhhhhh---eeeeEEecCCCCC---cceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 389999998765544432 2346999996542 222222211 11 2368899999985
No 93
>KOG3895|consensus
Probab=68.39 E-value=5.2 Score=35.60 Aligned_cols=102 Identities=23% Similarity=0.356 Sum_probs=67.3
Q ss_pred EcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCC
Q psy6987 38 VNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDE 117 (204)
Q Consensus 38 vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~ 117 (204)
||.....+.+|.|-.+.+-|.+..+..|...+..+|.||.-. - ++.+. ...-+-++|=..+..|.|-..++|.++
T Consensus 189 vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn-H-K~m~s---~~tyPvVVkvghahsGmGKiKV~Nh~d 263 (488)
T KOG3895|consen 189 VNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN-H-KEMLS---QPTYPVVVKVGHAHSGMGKIKVENHED 263 (488)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-c-hhhcc---CCCCcEEEEecccccccceeeecchhh
Confidence 344445566788888888888888777877889999998743 2 22221 233578999999999999999999887
Q ss_pred CCCccc--eEEEecccCCcccCCcceeeEE
Q psy6987 118 VPLEES--VVVAKYIEKPLLVEGHKCDLRL 145 (204)
Q Consensus 118 i~~~~~--~vvQkYI~~p~Li~grKFDiR~ 145 (204)
+..-.. .+.+.|.+---.| .-|+|||+
T Consensus 264 fqDi~svval~~Tyat~epFi-DaKYDiri 292 (488)
T KOG3895|consen 264 FQDIASVVALTKTYATAEPFI-DAKYDIRI 292 (488)
T ss_pred hHhHHHHHHHHhhhhhccccc-cccceeeh
Confidence 653111 1223344322112 35789887
No 94
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=68.21 E-value=16 Score=32.64 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=52.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC-----------------CccceEEEecccCCcccCCcceeeEEEEEEeccCCe
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP-----------------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPL 155 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~-----------------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl 155 (204)
+..-|+|.++|.-|.||.-+.+.+++. .-...|||+=|..==.+++- ..+|+
T Consensus 257 ~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~a-----------vAEPV 325 (403)
T TIGR02049 257 QPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEA-----------VAEPV 325 (403)
T ss_pred CCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCc-----------ccCce
Confidence 456899999999999999999988763 13678999977632222332 23343
Q ss_pred EEEEec----ccEEeecCCCCCCCCCCCCCcccccc
Q psy6987 156 IIYMYE----EGLVRFATVKYDSGRKHLWNPCMHLC 187 (204)
Q Consensus 156 ~~y~~~----~g~~r~~~~~y~~~~~~~~~~~~HlT 187 (204)
||+-+ .|+-|+.++.=. ++||+.+-||.-
T Consensus 326 -VYmid~~vvggfYRvh~~Rg~--dENLNapG~~F~ 358 (403)
T TIGR02049 326 -VYMIGRTVTGGFYRVHTGRGV--DENLNAPGMHFV 358 (403)
T ss_pred -EEEECCEEeEEEEEecCCCCC--cccCCCCCCeee
Confidence 45544 466777766432 235666666653
No 95
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=62.59 E-value=4.4 Score=35.65 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=34.1
Q ss_pred EEcccCCCccccchHHHHHHHHHHHh-hcCCCC-CCceeccccC-hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeC
Q psy6987 37 RVNHFPRSYELTRKDRLYKNIEKMQH-SKGFKH-FDFIPSTFVM-PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD 113 (204)
Q Consensus 37 ~vNh~p~~~~l~~K~~l~~~l~~~~~-~~~~~~-~~~~P~Tf~l-~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~ 113 (204)
.|-+-||+..+..|..+.-. -+|.+ .-++.. ..=+|.++.- +.+.+...+ + -..|++||..++.|.|+.+-.
T Consensus 233 ~iaNa~G~gv~edkal~~~l-p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~-~---l~~lvvKp~~g~gg~~~~~G~ 307 (330)
T PF04174_consen 233 VIANAPGSGVAEDKALYAFL-PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLA-N---LDELVVKPADGYGGKGVYIGP 307 (330)
T ss_dssp EEES-TTTHHHHSTTTGGGH-HHHHHHHH-S--SSEE---EETTSHHHHHHHHH-S---GGGEEEEE--------EEEGG
T ss_pred EEECCCccchhcchhHHHHh-HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHh-c---hhhcEEEecCCCCCCcceeCC
Confidence 34477999999999865543 23222 112221 2235555444 344444443 2 357999999999999999877
Q ss_pred CCC
Q psy6987 114 TPD 116 (204)
Q Consensus 114 ~~~ 116 (204)
+.+
T Consensus 308 ~~s 310 (330)
T PF04174_consen 308 KLS 310 (330)
T ss_dssp G--
T ss_pred cCC
Confidence 665
No 96
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=57.89 E-value=5.7 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
..-+.|+||..+..|.||.++++.+++. ...+.+|++||.
T Consensus 609 lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~ 656 (809)
T PRK14573 609 FSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL 656 (809)
T ss_pred cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3568999999999999999999987763 245678888775
No 97
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=54.43 E-value=24 Score=31.74 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=45.8
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC-----------------ccceEEEecccCCcccCCcceeeEEEEEEeccCC
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL-----------------EESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDP 154 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~-----------------~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~p 154 (204)
.+..-|+|.++|.-|.||..+++.+++.. -...|||+=|..=-.+++- | .+|
T Consensus 259 e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~a---------v--AEP 327 (404)
T PF08886_consen 259 EKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDA---------V--AEP 327 (404)
T ss_dssp S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTE---------E--EEE
T ss_pred CCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCc---------c--ccc
Confidence 35578999999999999999999998852 3689999988744444542 1 112
Q ss_pred eEEEEec----ccEEeecCCCCCCCCCCCCCccccccccc
Q psy6987 155 LIIYMYE----EGLVRFATVKYDSGRKHLWNPCMHLCNYS 190 (204)
Q Consensus 155 l~~y~~~----~g~~r~~~~~y~~~~~~~~~~~~HlTN~~ 190 (204)
.||+-+ .|+-|..++.=. ++||+.+-||.-=-+
T Consensus 328 -VVYmid~~vvggfyRvh~~rg~--deNLNapGm~F~pla 364 (404)
T PF08886_consen 328 -VVYMIDRYVVGGFYRVHTERGV--DENLNAPGMHFVPLA 364 (404)
T ss_dssp -EEEEETTEEEEEEEEEES--ST--TTTTS--TT-EEEEE
T ss_pred -eEEEECCEEEEEEEEecCCCCC--ccCCCCCCCEeeecc
Confidence 345544 467788776433 345767777764333
No 98
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=52.59 E-value=10 Score=33.37 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC---------------CccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP---------------LEESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~---------------~~~~~vvQkYI~ 131 (204)
+.+-|+|....-+|+|-++.++.++.. .-..+.+|+||-
T Consensus 150 dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 150 DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 578999998888899999999987642 135789999987
No 99
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=51.97 E-value=31 Score=31.40 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=30.0
Q ss_pred cccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCC
Q psy6987 75 TFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDE 117 (204)
Q Consensus 75 Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~ 117 (204)
+|.=+.+..+|+... ..+|.+||+..+.|+|+.++.+.++
T Consensus 123 ~f~~~e~a~ayi~~~---g~piVVKadGLaaGKGV~V~~~~ee 162 (428)
T COG0151 123 VFTDPEEAKAYIDEK---GAPIVVKADGLAAGKGVIVAMTLEE 162 (428)
T ss_pred ccCCHHHHHHHHHHc---CCCEEEecccccCCCCeEEcCCHHH
Confidence 344355666666543 5679999999999999999998554
No 100
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=38.49 E-value=39 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=16.5
Q ss_pred ceeeEEEEEEeccCCeEEEEecccE
Q psy6987 140 KCDLRLYVVVTSYDPLIIYMYEEGL 164 (204)
Q Consensus 140 KFDiR~yvlv~s~~pl~~y~~~~g~ 164 (204)
.=|+++.|+++.. |.+||+|++..
T Consensus 117 ~eDlqvlViiSrp-Pvkvf~y~dw~ 140 (167)
T PF02041_consen 117 HEDLQVLVIISRP-PVKVFIYDDWS 140 (167)
T ss_dssp SS-EEEEEEEESS-S--EEEESSTT
T ss_pred CcceEEEEEecCC-CeEEEEecccc
Confidence 4699998887664 89999998754
No 101
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=29.49 E-value=3.6e+02 Score=24.27 Aligned_cols=119 Identities=19% Similarity=0.323 Sum_probs=67.1
Q ss_pred EcccCCCccccchH-HHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCC-CCCCCceEEeCCC
Q psy6987 38 VNHFPRSYELTRKD-RLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVA-SSRGRGIYIVDTP 115 (204)
Q Consensus 38 vNh~p~~~~l~~K~-~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~-~~rG~GI~~~~~~ 115 (204)
++-+|+...|..+. .+.. |++-...|.. +|+...+.+. +++.........++|+|-.. |.-|+|-.++++.
T Consensus 85 ~~v~p~~~~l~~~qdR~~e--K~~l~~~Gi~----va~~~~v~~~-~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~ 157 (375)
T COG0026 85 VKVFPSPDALRIAQDRLVE--KQFLDKAGLP----VAPFQVVDSA-EELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSD 157 (375)
T ss_pred cCcCCCHHHHHHHhhHHHH--HHHHHHcCCC----CCCeEEeCCH-HHHHHHHHHcCCceEEEeccccccCCCeEEeeCc
Confidence 67788877764433 2322 1121122322 3444444322 23333333345789999864 7899999999987
Q ss_pred CCCCC-------ccceEEEecccCCcccCCcceeeEEEEEEe-ccC------CeEEEEecccEEeecCCCC
Q psy6987 116 DEVPL-------EESVVVAKYIEKPLLVEGHKCDLRLYVVVT-SYD------PLIIYMYEEGLVRFATVKY 172 (204)
Q Consensus 116 ~~i~~-------~~~~vvQkYI~~p~Li~grKFDiR~yvlv~-s~~------pl~~y~~~~g~~r~~~~~y 172 (204)
.++.. ....|+-+||. |+-=+=|++. +.+ |+.==++++|+++.+..|=
T Consensus 158 ~~~~~~~~~~~~~~~~vlE~fV~---------F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~~siaPa 219 (375)
T COG0026 158 ADLELRAAGLAEGGVPVLEEFVP---------FEREISVIVARSNDGEVAFYPVAENVHRNGILRTSIAPA 219 (375)
T ss_pred ccchhhHhhhhccCceeEEeecc---------cceEEEEEEEEcCCCCEEEecccceeeecCEEEEEEecC
Confidence 76542 12227777877 6655555543 222 2221247889999988764
No 102
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=27.17 E-value=80 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.7
Q ss_pred eeEEEEEEeccCCeEEEEecc--cEEeecCCCCC
Q psy6987 142 DLRLYVVVTSYDPLIIYMYEE--GLVRFATVKYD 173 (204)
Q Consensus 142 DiR~yvlv~s~~pl~~y~~~~--g~~r~~~~~y~ 173 (204)
|||+|++ +|-.+|..++ -++++|++.|.
T Consensus 76 ~IRmyLV----~P~Diy~v~~~~~W~~I~~k~F~ 105 (215)
T PF08594_consen 76 HIRMYLV----DPHDIYSVDHSNSWIAICSKNFM 105 (215)
T ss_pred CeEEEEe----cccceEEecCCccEEEEecCcce
Confidence 7899988 4667888754 78999999886
No 103
>KOG2157|consensus
Probab=26.88 E-value=53 Score=30.61 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred ccceEEEecccCCcccCCcceeeEEEEEEeccCCeEEEEecccEEeecCCCCCCCC
Q psy6987 121 EESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFATVKYDSGR 176 (204)
Q Consensus 121 ~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~y~~~~ 176 (204)
-+.|+++.+..+++++.-|++.+|++..-.+ | .+.+++ -++.+|...+.+..
T Consensus 262 lR~~vlvt~~~pl~~y~yreg~lRf~t~~y~--~-~~nl~n-~~~HLtN~siqK~~ 313 (497)
T KOG2157|consen 262 LRQYVLVTHFDPLLLYRYREGFLRFSTEPYG--P-LVNLQN-MSVHLTNVSIQKLY 313 (497)
T ss_pred eeEEEEeecccchhheeeccceEEEEeccCc--c-hhhhcc-cchhhhccccccCC
Confidence 4789999999988888999999999988655 4 566776 78888877776543
No 104
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=26.63 E-value=2.4e+02 Score=22.88 Aligned_cols=45 Identities=31% Similarity=0.539 Sum_probs=27.2
Q ss_pred eeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCC----ceEEeCCCCCC
Q psy6987 72 IPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGR----GIYIVDTPDEV 118 (204)
Q Consensus 72 ~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~----GI~~~~~~~~i 118 (204)
+|+..+. |.+..+..... ....|++||....+|| ||+++.++++.
T Consensus 18 vp~g~~a~s~eea~~~~~~l--~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea 68 (202)
T PF08442_consen 18 VPRGVVATSPEEAREAAKEL--GGKPLVVKAQVLAGGRGKAGGVKIAKSPEEA 68 (202)
T ss_dssp --SEEEESSHHHHHHHHHHH--TTSSEEEEE-SSSSTTTTTTCEEEESSHHHH
T ss_pred CCCeeecCCHHHHHHHHHHh--CCCcEEEEEeEeecCcccCCceeecCCHHHH
Confidence 7777766 55555544433 2458999997554444 79999986543
No 105
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=25.21 E-value=83 Score=28.26 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCcceeeEEEEEEe-------ccCCeEEEEecccEEeecC
Q psy6987 137 EGHKCDLRLYVVVT-------SYDPLIIYMYEEGLVRFAT 169 (204)
Q Consensus 137 ~grKFDiR~yvlv~-------s~~pl~~y~~~~g~~r~~~ 169 (204)
++.|+|-+.+-++. ..||..+|+|.+||+.-..
T Consensus 99 ~~~~~d~~s~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~ 138 (374)
T PF10340_consen 99 NQKKYDSQSYWLVKAPNRFKPKSDPVLIYLHGGGYFLGTT 138 (374)
T ss_pred cccccccceEEEEeCCcccCCCCCcEEEEEcCCeeEecCC
Confidence 45788888777665 2579999999999976443
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=24.59 E-value=57 Score=28.98 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=17.6
Q ss_pred CcEEEcCC--CCCCCC--ceEEeCCCCC
Q psy6987 94 GPWIVKPV--ASSRGR--GIYIVDTPDE 117 (204)
Q Consensus 94 ~~wI~KP~--~~~rG~--GI~~~~~~~~ 117 (204)
.++++||. .|.+|. |+.+.++.++
T Consensus 41 ~PvVvK~~~~~ggkg~~GGV~~~~~~~e 68 (386)
T TIGR01016 41 GPVVVKAQVHAGGRGKAGGVKVAKSKEE 68 (386)
T ss_pred CcEEEEecccCCCCccCceEEEeCCHHH
Confidence 58999997 344554 8999987654
No 107
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=23.39 E-value=73 Score=27.77 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=45.1
Q ss_pred cccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHH--HhCCCCcEEEcCCCCC---CCCceEEeC
Q psy6987 39 NHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTIS--HYRTRGPWIVKPVASS---RGRGIYIVD 113 (204)
Q Consensus 39 Nh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~--~~~~~~~wI~KP~~~~---rG~GI~~~~ 113 (204)
.-++.-..|.+...++..+.++....+. ..=..|....+..+.++.... ..+..-+.|+||.... ..-.+.++-
T Consensus 83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~-~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf 161 (307)
T PF05770_consen 83 DPPDAIRPLLDRQSMLQVLSELELSEGD-GRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVF 161 (307)
T ss_dssp T-HHHHHHHCCHHCCHHHHHHHHHHHTC-TTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-
T ss_pred cCHHHHHHHHCHHHHHHHHHHhhccccC-CcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEE
Confidence 4444445556666666666665432221 112467766665332222222 2234569999996422 344667776
Q ss_pred CCCCCCC-ccceEEEecccCC
Q psy6987 114 TPDEVPL-EESVVVAKYIEKP 133 (204)
Q Consensus 114 ~~~~i~~-~~~~vvQkYI~~p 133 (204)
+.+.+.. ..+.|+|+||..-
T Consensus 162 ~~~gL~~L~~P~VlQeFVNHg 182 (307)
T PF05770_consen 162 NEEGLKDLKPPCVLQEFVNHG 182 (307)
T ss_dssp SGGGGTT--SSEEEEE----T
T ss_pred CHHHHhhcCCCEEEEEeecCC
Confidence 6655533 4588999999943
No 108
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.16 E-value=34 Score=22.88 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=10.1
Q ss_pred CcccCCc--ceeeEEE
Q psy6987 133 PLLVEGH--KCDLRLY 146 (204)
Q Consensus 133 p~Li~gr--KFDiR~y 146 (204)
..-.+|| |||||.|
T Consensus 29 ~vSwNg~~~KyDiR~W 44 (72)
T COG4443 29 RVSWNGRPPKYDIRAW 44 (72)
T ss_pred hcccCCCCCcCccccc
Confidence 3346776 8999986
Done!