Query psy6987
Match_columns 204
No_of_seqs 134 out of 1110
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:53:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 7.8E-51 2.7E-55 356.4 7.3 194 2-201 23-259 (380)
2 1gsa_A Glutathione synthetase; 97.7 6.4E-05 2.2E-09 62.4 6.1 69 71-148 134-214 (316)
3 3n6x_A Putative glutathionylsp 97.3 0.0002 6.9E-09 64.2 4.8 125 37-171 309-453 (474)
4 1uc8_A LYSX, lysine biosynthes 97.3 0.00018 6.1E-09 58.7 4.1 87 45-148 84-184 (280)
5 1iow_A DD-ligase, DDLB, D-ALA\ 97.2 0.0006 2.1E-08 56.4 6.8 87 46-148 93-193 (306)
6 2pn1_A Carbamoylphosphate synt 97.1 0.00094 3.2E-08 56.1 6.4 76 47-131 112-191 (331)
7 1z2n_X Inositol 1,3,4-trisphos 97.0 0.0012 4E-08 55.3 6.4 97 37-148 86-188 (324)
8 2q7d_A Inositol-tetrakisphosph 96.9 0.0016 5.3E-08 56.1 6.9 106 35-148 102-214 (346)
9 2cqy_A Propionyl-COA carboxyla 96.9 0.00024 8.2E-09 49.9 1.3 59 72-133 23-99 (108)
10 1i7n_A Synapsin II; synapse, p 96.8 0.00041 1.4E-08 59.0 2.3 49 93-148 152-208 (309)
11 2p0a_A Synapsin-3, synapsin II 96.7 0.00059 2E-08 58.9 2.3 49 93-148 169-225 (344)
12 1pk8_A RAT synapsin I; ATP bin 96.6 0.00069 2.3E-08 59.9 2.3 49 93-148 264-320 (422)
13 4dim_A Phosphoribosylglycinami 96.6 0.0017 5.7E-08 56.1 4.2 66 72-146 124-201 (403)
14 3ouz_A Biotin carboxylase; str 96.1 0.01 3.5E-07 52.1 6.7 59 72-133 134-210 (446)
15 2z04_A Phosphoribosylaminoimid 96.0 0.013 4.6E-07 49.7 6.7 86 47-150 90-184 (365)
16 2i87_A D-alanine-D-alanine lig 95.9 0.0044 1.5E-07 53.1 3.2 51 92-150 170-228 (364)
17 3ln6_A Glutathione biosynthesi 95.9 0.0033 1.1E-07 59.5 2.5 83 48-148 483-578 (750)
18 3ax6_A Phosphoribosylaminoimid 95.7 0.016 5.4E-07 49.6 6.0 86 46-150 97-185 (380)
19 2ip4_A PURD, phosphoribosylami 95.7 0.017 5.7E-07 50.2 6.1 84 47-149 99-194 (417)
20 4eg0_A D-alanine--D-alanine li 95.5 0.0085 2.9E-07 50.1 3.3 88 47-149 105-203 (317)
21 1ulz_A Pyruvate carboxylase N- 95.4 0.017 5.7E-07 50.7 5.3 59 72-133 129-205 (451)
22 2yrx_A Phosphoribosylglycinami 95.4 0.018 6.3E-07 50.6 5.3 73 48-131 122-210 (451)
23 1e4e_A Vancomycin/teicoplanin 95.3 0.0089 3E-07 50.7 3.1 51 93-151 165-223 (343)
24 2dzd_A Pyruvate carboxylase; b 95.3 0.033 1.1E-06 49.0 6.9 59 72-133 135-211 (461)
25 1kjq_A GART 2, phosphoribosylg 95.3 0.0086 3E-07 51.3 3.0 69 72-150 128-210 (391)
26 3df7_A Putative ATP-grAsp supe 95.3 0.013 4.6E-07 49.0 3.9 45 92-149 132-176 (305)
27 2yw2_A Phosphoribosylamine--gl 95.2 0.029 1E-06 48.7 6.2 75 46-131 99-189 (424)
28 3ln7_A Glutathione biosynthesi 95.2 0.0084 2.9E-07 56.7 2.6 84 48-148 488-584 (757)
29 2io8_A Bifunctional glutathion 95.2 0.077 2.6E-06 49.1 9.0 75 46-134 494-575 (619)
30 2xcl_A Phosphoribosylamine--gl 95.1 0.013 4.4E-07 50.9 3.6 75 46-131 99-189 (422)
31 2w70_A Biotin carboxylase; lig 95.0 0.025 8.5E-07 49.5 5.0 59 72-133 130-207 (449)
32 3k3p_A D-alanine--D-alanine li 95.0 0.0064 2.2E-07 52.9 1.2 40 92-131 200-247 (383)
33 3k5i_A Phosphoribosyl-aminoimi 94.9 0.053 1.8E-06 47.1 7.0 57 72-131 138-205 (403)
34 2r85_A PURP protein PF1517; AT 94.9 0.007 2.4E-07 50.5 1.1 39 93-131 126-177 (334)
35 3aw8_A PURK, phosphoribosylami 94.8 0.016 5.5E-07 49.4 3.2 74 47-131 94-176 (369)
36 2pbz_A Hypothetical protein; N 94.8 0.0093 3.2E-07 50.8 1.7 39 92-131 124-167 (320)
37 3vmm_A Alanine-anticapsin liga 94.8 0.054 1.8E-06 48.3 6.7 76 47-133 137-234 (474)
38 3r5x_A D-alanine--D-alanine li 94.7 0.011 3.6E-07 49.0 1.8 74 47-131 95-179 (307)
39 2dwc_A PH0318, 433AA long hypo 94.7 0.014 4.9E-07 50.8 2.7 57 72-131 136-206 (433)
40 3q2o_A Phosphoribosylaminoimid 94.6 0.082 2.8E-06 45.4 7.3 57 72-131 127-192 (389)
41 2vpq_A Acetyl-COA carboxylase; 94.6 0.041 1.4E-06 48.2 5.4 51 80-133 141-205 (451)
42 3mjf_A Phosphoribosylamine--gl 94.5 0.031 1E-06 49.1 4.4 74 47-131 105-194 (431)
43 4fu0_A D-alanine--D-alanine li 94.5 0.021 7.1E-07 48.8 3.2 41 91-131 175-223 (357)
44 3orq_A N5-carboxyaminoimidazol 94.5 0.017 5.8E-07 49.7 2.6 57 72-131 125-190 (377)
45 3t7a_A Inositol pyrophosphate 94.4 0.042 1.4E-06 46.7 4.7 103 32-148 80-216 (330)
46 3lp8_A Phosphoribosylamine-gly 94.4 0.025 8.7E-07 49.8 3.5 74 47-131 121-210 (442)
47 3e5n_A D-alanine-D-alanine lig 94.3 0.017 5.8E-07 50.1 2.2 57 72-131 174-244 (386)
48 2qk4_A Trifunctional purine bi 94.3 0.038 1.3E-06 48.5 4.5 75 46-131 125-216 (452)
49 2fb9_A D-alanine:D-alanine lig 94.2 0.016 5.4E-07 48.8 1.7 39 93-131 150-196 (322)
50 2pvp_A D-alanine-D-alanine lig 94.1 0.039 1.3E-06 47.5 4.0 40 92-131 184-231 (367)
51 3u9t_A MCC alpha, methylcroton 93.9 0.017 5.7E-07 54.0 1.5 51 80-133 168-232 (675)
52 1ehi_A LMDDL2, D-alanine:D-lac 93.9 0.019 6.6E-07 49.4 1.8 50 93-149 174-231 (377)
53 3i12_A D-alanine-D-alanine lig 93.9 0.029 9.8E-07 48.1 2.8 49 93-149 179-235 (364)
54 4ffl_A PYLC; amino acid, biosy 93.7 0.081 2.8E-06 44.8 5.3 39 93-131 125-164 (363)
55 2vob_A Trypanothione synthetas 93.7 0.11 3.7E-06 48.3 6.5 88 46-148 509-603 (652)
56 3jrx_A Acetyl-COA carboxylase 93.7 0.044 1.5E-06 50.3 3.9 41 93-133 244-294 (587)
57 3se7_A VANA; alpha-beta struct 93.7 0.024 8.2E-07 48.1 1.9 50 93-150 165-222 (346)
58 3lwb_A D-alanine--D-alanine li 93.7 0.029 9.9E-07 48.4 2.5 50 93-150 188-245 (373)
59 3glk_A Acetyl-COA carboxylase 93.7 0.15 5E-06 46.3 7.2 41 93-133 228-278 (540)
60 3n6r_A Propionyl-COA carboxyla 93.6 0.026 9E-07 52.7 2.2 41 93-133 152-206 (681)
61 1vkz_A Phosphoribosylamine--gl 93.4 0.048 1.7E-06 47.3 3.5 74 47-131 104-193 (412)
62 1w96_A ACC, acetyl-coenzyme A 93.4 0.05 1.7E-06 49.3 3.7 41 93-133 234-284 (554)
63 3vot_A L-amino acid ligase, BL 93.0 0.036 1.2E-06 48.2 2.0 40 92-131 144-202 (425)
64 3hbl_A Pyruvate carboxylase; T 92.2 0.063 2.1E-06 53.0 2.7 41 93-133 155-209 (1150)
65 3tqt_A D-alanine--D-alanine li 92.2 0.042 1.4E-06 47.5 1.3 39 93-131 179-226 (372)
66 4e4t_A Phosphoribosylaminoimid 92.0 0.052 1.8E-06 47.5 1.7 38 94-131 172-216 (419)
67 3eth_A Phosphoribosylaminoimid 90.6 0.22 7.5E-06 42.7 4.2 82 39-131 66-157 (355)
68 1a9x_A Carbamoyl phosphate syn 89.9 0.12 4.1E-06 50.6 2.1 59 72-133 689-759 (1073)
69 3va7_A KLLA0E08119P; carboxyla 88.6 0.095 3.3E-06 52.1 0.4 40 93-132 180-233 (1236)
70 1a9x_A Carbamoyl phosphate syn 88.3 0.23 7.7E-06 48.7 2.8 59 72-133 143-213 (1073)
71 2qf7_A Pyruvate carboxylase pr 87.8 0.1 3.6E-06 51.5 0.1 41 93-133 171-225 (1165)
72 2r7k_A 5-formaminoimidazole-4- 86.5 0.12 4.1E-06 44.5 -0.3 38 94-131 151-203 (361)
73 1wr2_A Hypothetical protein PH 76.0 0.43 1.5E-05 38.1 -0.6 57 72-131 36-117 (238)
74 3k1t_A Glutamate--cysteine lig 59.3 26 0.00087 30.6 7.0 81 93-187 277-378 (432)
75 3le4_A Microprocessor complex 49.1 28 0.00096 22.9 4.3 33 146-178 33-65 (79)
76 3ufx_B Succinyl-COA synthetase 35.4 11 0.00036 32.7 0.8 57 72-131 19-95 (397)
77 2nu8_B SCS-beta, succinyl-COA 31.2 66 0.0022 27.5 5.2 25 93-117 39-68 (388)
78 2fp4_B Succinyl-COA ligase [GD 30.5 43 0.0015 28.8 3.9 23 95-117 42-75 (395)
79 3pm7_A Uncharacterized protein 28.4 22 0.00077 23.6 1.3 11 136-146 32-44 (80)
80 4g06_A Uncharacterized protein 26.5 27 0.00093 23.2 1.4 11 136-146 39-51 (79)
81 2l3a_A Uncharacterized protein 25.0 31 0.0011 23.1 1.5 11 136-146 34-46 (82)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=7.8e-51 Score=356.44 Aligned_cols=194 Identities=28% Similarity=0.451 Sum_probs=132.5
Q ss_pred ceeccc-c---ccCCCCeEEEeeccCCCh-hHhhh-cCCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceecc
Q psy6987 2 VFLNLG-V---TSDVADFNLLWSGLHPKP-QTLRS-LAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPST 75 (204)
Q Consensus 2 ~~~~~~-~---~~~~~~~d~~W~~~~~~~-~~~~~-l~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~T 75 (204)
||.+.| | +.+.++|||+|++.+..+ +.+.. ..++|+||||||+.+||||+.|+++|++++. +...++|+|+|
T Consensus 23 vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~--~~~~~~f~P~t 100 (380)
T 3tig_A 23 ILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPE--LTETCTWFPES 100 (380)
T ss_dssp HHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCHH--HHTTCTTSCCE
T ss_pred HHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhhh--cccccCcCCcc
Confidence 566777 4 346788999999876533 22222 2578999999999999999999999998543 45678999999
Q ss_pred ccC-hhH-----------------------HHHHHHHHh-----CCCCcEEEcCCCCCCCCceEEeCCCCCCC-----Cc
Q psy6987 76 FVM-PGD-----------------------FRELTISHY-----RTRGPWIVKPVASSRGRGIYIVDTPDEVP-----LE 121 (204)
Q Consensus 76 f~l-~~~-----------------------~~~~~~~~~-----~~~~~wI~KP~~~~rG~GI~~~~~~~~i~-----~~ 121 (204)
|.| |.+ +++|+..+. ..++.||+||.++++|+||.++++.+++. ..
T Consensus 101 y~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~~ 180 (380)
T 3tig_A 101 YVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQG 180 (380)
T ss_dssp EECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHHHHHHHHHHT
T ss_pred eeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhccC
Confidence 999 764 345666553 35789999999999999999999998874 25
Q ss_pred cceEEEecccCCccc--CCcceeeEEEEEEeccCCeEEEEecccEEeecCCCCCCCCCCCCCccccccccccccC-CCCC
Q psy6987 122 ESVVVAKYIEKPLLV--EGHKCDLRLYVVVTSYDPLIIYMYEEGLVRFATVKYDSGRKHLWNPCMHLCNYSINKH-HSDY 198 (204)
Q Consensus 122 ~~~vvQkYI~~p~Li--~grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~y~~~~~~~~~~~~HlTN~~vqk~-~~~y 198 (204)
..+|||+||++|+|| +|||||||+||||+| |+++|+|++|++|+|+++|+.+ ++.+.++||||+||||+ +++|
T Consensus 181 ~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~--~~~~~~~HLTN~~iqk~~~~~y 256 (380)
T 3tig_A 181 QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTNHCIQKEHSKNY 256 (380)
T ss_dssp SCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC------------------------------
T ss_pred CcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCcc--chhhhhhhcccccccccccccc
Confidence 789999999999999 999999999999999 9999999999999999999975 46688999999999997 4577
Q ss_pred CCC
Q psy6987 199 IKD 201 (204)
Q Consensus 199 ~~~ 201 (204)
++.
T Consensus 257 ~~~ 259 (380)
T 3tig_A 257 GRY 259 (380)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 2
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.66 E-value=6.4e-05 Score=62.38 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=52.0
Q ss_pred ceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeC-CCCCCC---------CccceEEEecccCCcccCC
Q psy6987 71 FIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD-TPDEVP---------LEESVVVAKYIEKPLLVEG 138 (204)
Q Consensus 71 ~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~-~~~~i~---------~~~~~vvQkYI~~p~Li~g 138 (204)
-+|+|+.+. .++.++...+ +++|+||..|+.|+|+.+++ +.+++. ...++++|+||+.+
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~----~p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~----- 204 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKH----SDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI----- 204 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHH----SSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----
T ss_pred cCCCeEEeCCHHHHHHHHHHc----CCEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----
Confidence 578888763 4555666544 28999999999999999998 665532 13689999999842
Q ss_pred cceeeEEEEE
Q psy6987 139 HKCDLRLYVV 148 (204)
Q Consensus 139 rKFDiR~yvl 148 (204)
..+|+|+.++
T Consensus 205 ~~~~~~v~~~ 214 (316)
T 1gsa_A 205 KDGDKRVLVV 214 (316)
T ss_dssp GGCEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 3699998775
No 3
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.29 E-value=0.0002 Score=64.23 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred EEcccCCCccccchHHHHHHHHHHH-hhcCCC-CCCceeccccC-hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeC
Q psy6987 37 RVNHFPRSYELTRKDRLYKNIEKMQ-HSKGFK-HFDFIPSTFVM-PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD 113 (204)
Q Consensus 37 ~vNh~p~~~~l~~K~~l~~~l~~~~-~~~~~~-~~~~~P~Tf~l-~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~ 113 (204)
++|. ||+..+.+|..++-. -++. ...++. ....+|.++.- +.+.+..+. ....|++||..++.|.|+.+-.
T Consensus 309 i~Na-~gsgv~~dKal~a~L-p~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~----~l~~lViKp~~g~gg~gv~iG~ 382 (474)
T 3n6x_A 309 LANA-VGTGVADDKDTYIYV-PEMIRFYLGEEPILSNVPTYQLSKADDLKYVLD----NLAELVVKEVQGSGGYGMLVGP 382 (474)
T ss_dssp EESC-TTTHHHHSTTTGGGH-HHHHHHHHCSCCSSEECCCEETTSHHHHHHHHH----SGGGEEEEECCCE-----EEGG
T ss_pred EeCC-CchhhhcCcHHHHHh-HHHHHHhCCHhhhccCCCceecCCHHHHHHHHh----chhheEEEecCCCCCCceEECC
Confidence 3444 677888888854422 2221 112222 23456644433 334444443 2358999999999999998866
Q ss_pred CCCCC---------C-CccceEEEecccC---CcccC----CcceeeEEEEEEeccCCeEEEEecccEEeecCCC
Q psy6987 114 TPDEV---------P-LEESVVVAKYIEK---PLLVE----GHKCDLRLYVVVTSYDPLIIYMYEEGLVRFATVK 171 (204)
Q Consensus 114 ~~~~i---------~-~~~~~vvQkYI~~---p~Li~----grKFDiR~yvlv~s~~pl~~y~~~~g~~r~~~~~ 171 (204)
..+.- . ....||+|++|.- |.+.+ .+++|+|.|++-. + ..++...|+.|++..+
T Consensus 383 ~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g--~--~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 383 AASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG--K--TVSLVPGALCRVALRE 453 (474)
T ss_dssp GCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES--S--SEEECSCCEEEEECST
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC--C--ceEEecceEEEEecCC
Confidence 54321 1 2445999999983 33344 4789999999873 2 3567899999999763
No 4
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.28 E-value=0.00018 Score=58.69 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=59.7
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC---
Q psy6987 45 YELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--- 119 (204)
Q Consensus 45 ~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--- 119 (204)
....+|..+.+.+++. +. -+|+|+.+. .++.++.... ..++|+||..++.|+|+.++++.+++.
T Consensus 84 ~~~~dK~~~~~~l~~~----gi----~~p~~~~~~~~~~~~~~~~~~---~~p~vvKp~~g~~~~gv~~v~~~~el~~~~ 152 (280)
T 1uc8_A 84 EACGDKWATSVALAKA----GL----PQPKTALATDREEALRLMEAF---GYPVVLKPVIGSWGRLLAXXXXXXXXXXXX 152 (280)
T ss_dssp HHHHBHHHHHHHHHHT----TC----CCCCEEEESSHHHHHHHHHHH---CSSEEEECSBCCBCSHHHHHHHHHC-----
T ss_pred HHhCCHHHHHHHHHHc----Cc----CCCCeEeeCCHHHHHHHHHHh---CCCEEEEECCCCCcccceecccccccchhh
Confidence 3466777777766652 22 158887764 4455555433 358999999999999999887754432
Q ss_pred ------C---ccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 ------L---EESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 ------~---~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
. ..+++||+||+. ..+++|++++
T Consensus 153 ~~~~~~~~~~~~~~lvqe~i~~------~~~e~~v~v~ 184 (280)
T 1uc8_A 153 XXKEVLGGFQHQLFYIQEYVEK------PGRDIRVFVV 184 (280)
T ss_dssp -------CTTTTCEEEEECCCC------SSCCEEEEEE
T ss_pred hhHhhhcccCCCcEEEEeccCC------CCceEEEEEE
Confidence 1 468999999984 3578888875
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.23 E-value=0.0006 Score=56.36 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhH-HHHH-----HHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGD-FREL-----TISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~-~~~~-----~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~ 119 (204)
...+|..+.+.+++ .+. -+|+|+.+... +.++ ........-++|+||..++.|+|+.++++.+++.
T Consensus 93 ~~~dK~~~~~~l~~----~gi----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~ 164 (306)
T 1iow_A 93 LSMDKLRSKLLWQG----AGL----PVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 (306)
T ss_dssp HHHCHHHHHHHHHH----TTC----CBCCEEEEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHH
T ss_pred HHcCHHHHHHHHHH----CCC----CCCCeEEEchhhhhccchhhhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHH
Confidence 35677777666665 222 16777776443 3220 0011233458999999999999999999987653
Q ss_pred --------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 --------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 --------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
...+++||+||+ |+ ++++.++
T Consensus 165 ~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~ 193 (306)
T 1iow_A 165 DALRLAFQHDEEVLIEKWLS------GP--EFTVAIL 193 (306)
T ss_dssp HHHHHHTTTCSEEEEEECCC------CC--EEEEEEE
T ss_pred HHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE
Confidence 257899999998 43 6777666
No 6
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.06 E-value=0.00094 Score=56.05 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=37.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----cc
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL----EE 122 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~----~~ 122 (204)
..+|..+.+.+++. +. -.|+|+..+.++.++.. ......++|+||..++.|+|+.++++.+++.. ..
T Consensus 112 ~~dK~~~~~~l~~~----gi----p~p~~~~~~~~~~~~~~-~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~ 182 (331)
T 2pn1_A 112 CFDKYTMYEYCLRQ----GI----AHARTYATMASFEEALA-AGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNT 182 (331)
T ss_dssp HHBHHHHHHHHHHH----TC----CCCCEESSHHHHHHHHH-TTSSCSCEEEEESBC-----------------------
T ss_pred hhCHHHHHHHHHHc----CC----CCCcEEecHHHhhhhhh-cccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhCC
Confidence 45666666655542 22 15777776655554442 12334689999999999999999999877642 46
Q ss_pred ceEEEeccc
Q psy6987 123 SVVVAKYIE 131 (204)
Q Consensus 123 ~~vvQkYI~ 131 (204)
+++||+||+
T Consensus 183 ~~lvee~i~ 191 (331)
T 2pn1_A 183 DLIVQELLV 191 (331)
T ss_dssp CEEEEECCC
T ss_pred CeEEEecCC
Confidence 899999998
No 7
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.99 E-value=0.0012 Score=55.32 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=64.5
Q ss_pred EEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCC---CceEE
Q psy6987 37 RVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRG---RGIYI 111 (204)
Q Consensus 37 ~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG---~GI~~ 111 (204)
.+|.........+|..+.+.+++ .|. -+|+|+.+. .++.++.... ...-++|+||..|+.| .|+.+
T Consensus 86 ~~~~~~~~~~~~dK~~~~~~l~~----~gi----~~P~~~~~~~~~~~~~~~~~~-~~~~P~vvKP~~g~g~~~s~gv~~ 156 (324)
T 1z2n_X 86 FLESSAIHDMMSSREEINALLIK----NNI----PIPNSFSVKSKEEVIQLLQSK-QLILPFIVKPENAQGTFNAHQMKI 156 (324)
T ss_dssp EETCHHHHHHHTBHHHHHHHHHH----TTC----CCSCEEEESSHHHHHHHHHTT-CSCSSEEEEESBCSSSSGGGEEEE
T ss_pred EeCCHHHHHHHhCHHHHHHHHHH----CCC----CCCCEEEeCCHHHHHHHHHHc-CCCCCEEEeeCCCCCCccceeeEE
Confidence 34443334445677777777665 222 268888774 3343433211 1235899999999999 99999
Q ss_pred eCCCCCCCC-ccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 112 VDTPDEVPL-EESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 112 ~~~~~~i~~-~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
+.+.+++.. ..++++|+||+.+ | +|+|++++
T Consensus 157 v~~~~~l~~~~~~~lvqe~i~~~----g--~~~~v~v~ 188 (324)
T 1z2n_X 157 VLEQEGIDDIHFPCLCQHYINHN----N--KIVKVFCI 188 (324)
T ss_dssp ECSGGGGTTCCSSEEEEECCCCT----T--CEEEEEEE
T ss_pred EeCHHHHhhcCCCEEEEEccCCC----C--cEEEEEEE
Confidence 998776643 4689999999842 3 78998875
No 8
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=96.95 E-value=0.0016 Score=56.11 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=71.6
Q ss_pred CcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChh----HHHHHHHHHhCCCCcEEEcCCCC--CCCCc
Q psy6987 35 HQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG----DFRELTISHYRTRGPWIVKPVAS--SRGRG 108 (204)
Q Consensus 35 ~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~----~~~~~~~~~~~~~~~wI~KP~~~--~rG~G 108 (204)
--.+|-..+...+.+|-.+.+.|.+..-... ..-=-.|+|+.+.. +..+.+.. ....-+.|+||..| +.|.|
T Consensus 102 v~vinp~~ai~~~~dk~~~~~~L~k~~~~~~-~~gIp~P~t~~~~~~~~~~~~~~~~~-~~lg~P~VvKP~~g~Gs~s~~ 179 (346)
T 2q7d_A 102 TIVLDPLPAIRTLLDRSKSYELIRKIEAYME-DDRICSPPFMELTSLCGDDTMRLLEK-NGLTFPFICKTRVAHGTNSHE 179 (346)
T ss_dssp SEEESCHHHHHHTTBHHHHHHHHHHHHHHHC-BTTEECCCEEEECSCCCTTHHHHHHH-TTCCSSEEEECSBCSSTTCCE
T ss_pred eEEcCCHHHHHHhhhHHHHHHHHHhhccccc-CCCCCCCCEEEEeCCCHHHHHHHHHh-cCCCCCEEEEecCCCcceeee
Confidence 3456777777778899999998887531100 01123788888853 44444321 23356999999853 44889
Q ss_pred eEEeCCCCCCCC-ccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 109 IYIVDTPDEVPL-EESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 109 I~~~~~~~~i~~-~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
+.++.+.+++.. ..+++||+||+. +| .|+|+||+
T Consensus 180 v~~v~~~~~l~~~~~~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 180 MAIVFNQEGLNAIQPPCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp EEEECSGGGTTC--CCEEEEECCCC----TT--EEEEEEEE
T ss_pred eEEecCHHHHHhcCCCEEEEEeeCC----CC--eEEEEEEE
Confidence 999999877654 467999999984 34 69999997
No 9
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00024 Score=49.86 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=41.3
Q ss_pred eeccc--cC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 72 IPSTF--VM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf--~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
+|+++ .+ +.++.++... ..-++|+||..++.|+|+.++++.+++. ....++||+||+.+
T Consensus 23 ~p~~~~~~~~~~~~~~~~~~~---~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 23 TIPGFDGVVKDAEEAVRIARE---IGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp CCSCCCSCBSSHHHHHHHHHH---HCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCCCcccccCCHHHHHHHHHh---cCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 46665 33 2344343332 2468999999999999999999876542 13679999999854
No 10
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.84 E-value=0.00041 Score=59.01 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
.-+-|+||..|++|+|+.++++.+++. ....+++|+||+ + .+|+|++|+
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~Vv 208 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-A------KYDIRVQKI 208 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEE
Confidence 459999999999999999999976542 145677999998 3 499999998
No 11
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=96.70 E-value=0.00059 Score=58.86 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
.-+-|+||..|+.|+|+.++++.+++. ....+++|+||+ + .+|+|++|+
T Consensus 169 g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VV 225 (344)
T 2p0a_A 169 HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKI 225 (344)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEE
Confidence 348999999999999999999976543 145677999998 3 499999998
No 12
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.64 E-value=0.00069 Score=59.91 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.8
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
.-+-|+||..|++|+|+.++++.+++. ....+++|+||+ + .+|||++|+
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~------g~DIRv~VV 320 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-A------KYDVRVQKI 320 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-E------EEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-C------CceEEEEEE
Confidence 358999999999999999999976543 145677999998 2 499999998
No 13
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=96.56 E-value=0.0017 Score=56.13 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=42.1
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCCcccCCc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKPLLVEGH 139 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p~Li~gr 139 (204)
.|+++.+. .++.++.. ...-++|+||..++.|+|+.++++.+++. ....+++|+||+ |.
T Consensus 124 ~p~~~~~~~~~~~~~~~~---~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~ 194 (403)
T 4dim_A 124 TARHFVVRNENELKNALE---NLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GY 194 (403)
T ss_dssp CCCEECCCSHHHHHHHHH---TSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SE
T ss_pred CCCEEEeCCHHHHHHHHh---cCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------Cc
Confidence 56666663 34444333 34568999999999999999999987653 246799999998 44
Q ss_pred ceeeEEE
Q psy6987 140 KCDLRLY 146 (204)
Q Consensus 140 KFDiR~y 146 (204)
.|++.++
T Consensus 195 e~sv~~~ 201 (403)
T 4dim_A 195 EFGAQAF 201 (403)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555544
No 14
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=96.10 E-value=0.01 Score=52.09 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=43.8
Q ss_pred eeccc--cC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 72 IPSTF--VM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf--~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
+|+++ .+ +.++.++.... .-++|+||..|+.|+|+.++++.+++.. ...++||+||+.|
T Consensus 134 ~p~~~~~~~~~~~e~~~~~~~~---g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 210 (446)
T 3ouz_A 134 VIPGSDGALAGAEAAKKLAKEI---GYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP 210 (446)
T ss_dssp BCSBCSSSCCSHHHHHHHHHHH---CSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred cCCCcccCCCCHHHHHHHHHHh---CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 55655 33 34555554433 4589999999999999999999887631 5689999999965
No 15
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=95.97 E-value=0.013 Score=49.74 Aligned_cols=86 Identities=17% Similarity=0.311 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh-hHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCC-----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP-GDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVP----- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~-~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~----- 119 (204)
..+|..+.+.+++ .+.. .|++..+. .++.++.. ...-++|+||..++ .|+|+.++++.+++.
T Consensus 90 ~~dK~~~~~~l~~----~gip----~p~~~~~~~~~~~~~~~---~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~ 158 (365)
T 2z04_A 90 KKSRIREKLFLKK----HGFP----VPEFLVIKRDEIIDALK---SFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKN 158 (365)
T ss_dssp HTCHHHHHHHHHT----TTCC----CCCEEEC-----------------CEEEECC------------------------
T ss_pred hhCHHHHHHHHHH----cCCC----CCCEEEEcHHHHHHHHH---hcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHH
Confidence 4566655555543 2321 56665543 33333332 22358999999999 999999999987654
Q ss_pred --CccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 120 --LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 120 --~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
...+++||+||+. |+ ++++.++..
T Consensus 159 ~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 184 (365)
T 2z04_A 159 HDKEESFIIEEFVKF-----EA--EISCIGVRD 184 (365)
T ss_dssp ------CEEEECCCC-----SE--EEEEEEEEC
T ss_pred hccCCCEEEEccCCC-----CE--EEEEEEEEC
Confidence 2467999999983 33 566666653
No 16
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=95.87 E-value=0.0044 Score=53.07 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
..-++|+||..++.|.||.++++.+++. ...+++||+||+ |+ ++++-++..
T Consensus 170 ~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~ 228 (364)
T 2i87_A 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLGN 228 (364)
T ss_dssp CCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEES
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcC
Confidence 3458999999999999999999876653 257899999998 54 667666654
No 17
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=95.87 E-value=0.0033 Score=59.48 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeC---CCCCCC---
Q psy6987 48 TRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD---TPDEVP--- 119 (204)
Q Consensus 48 ~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~---~~~~i~--- 119 (204)
.+|....+.+++. |.. +|++..+. .+..++.. .....++|+||..|+.|+||.+++ +.+++.
T Consensus 483 ~DK~~tk~lL~~~----GIP----vP~~~~~~~~~ea~~~~~--~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~ 552 (750)
T 3ln6_A 483 ANKVVTKKILDEK----HFP----TPFGDEFTDRKEALNYFS--QIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAI 552 (750)
T ss_dssp TTSHHHHHHHHHT----TCC----CCCCCCEETTTTHHHHHH--HSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHH
T ss_pred hCHHHHHHHHHHC----CcC----CCCEEEECCHHHHHHHHH--HhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHH
Confidence 3677666666552 221 56766653 34333331 234579999999999999999998 444432
Q ss_pred -----CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 -----LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 -----~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
....++||+||+ |+ |+|+.|+
T Consensus 553 ~~~~~~~~~vlVEefI~------G~--E~~v~Vv 578 (750)
T 3ln6_A 553 DIAFTEDSAILVEEYIE------GT--EYRFFVL 578 (750)
T ss_dssp HHHHHHCSEEEEEECCC------SE--EEEEEEE
T ss_pred HHHHhhCCcEEEEeccC------CC--EEEEEEE
Confidence 256899999997 53 8888776
No 18
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=95.69 E-value=0.016 Score=49.65 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=52.3
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCCCc--c
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVPLE--E 122 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~~~--~ 122 (204)
...+|..+.+.+++ .+.. .|++..+...-+ +.. ...-++|+||..++ .|+|+.++++.+++... .
T Consensus 97 ~~~dK~~~~~~l~~----~gip----~p~~~~~~~~~~-~~~---~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~ 164 (380)
T 3ax6_A 97 IIQDKFVQKEFLKK----NGIP----VPEYKLVKDLES-DVR---EFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKG 164 (380)
T ss_dssp HHHSHHHHHHHHHH----TTCC----CCCEEECSSHHH-HHH---TTCSSEEEEESCCC-----EEEECSGGGGGGCCCS
T ss_pred HhcCHHHHHHHHHH----cCCC----CCCeEEeCCHHH-HHH---hcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhcC
Confidence 34556655555544 2221 577766643322 322 33458999999999 99999999998776432 7
Q ss_pred ceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 123 SVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 123 ~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
+++||+||+. | .++++.++..
T Consensus 165 ~~lvEe~i~~-----g--~e~sv~~~~~ 185 (380)
T 3ax6_A 165 ETYLEEFVEI-----E--KELAVMVARN 185 (380)
T ss_dssp SEEEEECCCE-----E--EEEEEEEEEC
T ss_pred CEEEEeccCC-----C--eeEEEEEEEC
Confidence 8999999983 2 3666666653
No 19
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=95.67 E-value=0.017 Score=50.17 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=54.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC-----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----- 119 (204)
..+|..+.+.+++ .+.. .|++..+ +.++.++.... .-++|+||..++.|+|+.++++.+++.
T Consensus 99 ~~dK~~~~~~l~~----~gip----~p~~~~~~~~~~~~~~~~~~---~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~ 167 (417)
T 2ip4_A 99 EGSKAFAKGLMER----YGIP----TARYRVFREPLEALAYLEEV---GVPVVVKDSGLAAGKGVTVAFDLHQAKQAVAN 167 (417)
T ss_dssp HHCHHHHHHHHHH----TCCC----BCCEEEESSHHHHHHHHHHH---CSSEEEECTTSCSSTTCEEESCHHHHHHHHHH
T ss_pred HcCHHHHHHHHHH----cCCC----CCCeeeeCCHHHHHHHHHHc---CCCEEEEECCCCCCCCEEEeCCHHHHHHHHHH
Confidence 3456555555544 2221 4665554 34455554433 458999999999999999999876542
Q ss_pred --C---ccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 120 --L---EESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 120 --~---~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
. ..+++||+||+.+ ++++.++.
T Consensus 168 ~~~~~~~~~~lvEe~i~g~--------E~sv~~~~ 194 (417)
T 2ip4_A 168 ILNRAEGGEVVVEEYLEGE--------EATVLALT 194 (417)
T ss_dssp HTTSSSCCCEEEEECCCSC--------EEEEEEEE
T ss_pred HHhhccCCeEEEEECccCc--------EEEEEEEE
Confidence 1 2689999999833 56666664
No 20
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=95.45 E-value=0.0085 Score=50.15 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHH-hCCCCcEEEcCCCCCCCCceEEeCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISH-YRTRGPWIVKPVASSRGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~-~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---- 119 (204)
..+|..+.+.+++ .+.. +|+++.+. .+..++.... ....-++|+||..++.|.|+.++++.+++.
T Consensus 105 ~~dK~~~k~~l~~----~Gip----~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~ 176 (317)
T 4eg0_A 105 GLDKFRTKLVWQQ----TGVP----TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALS 176 (317)
T ss_dssp HHCHHHHHHHHHH----TTCC----CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHH
T ss_pred HhCHHHHHHHHHH----CCcC----CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHH
Confidence 3456655555554 2321 56666663 2344443110 112458999999999999999999987753
Q ss_pred ----CccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 120 ----LEESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 120 ----~~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
....++||+||+. |+ ++++.++-
T Consensus 177 ~~~~~~~~~lvEe~i~~-----G~--E~~v~vl~ 203 (317)
T 4eg0_A 177 EAATHDKIVIVEKSIEG-----GG--EYTACIAG 203 (317)
T ss_dssp HHTTTCSEEEEEECCCS-----SE--EEEEEEET
T ss_pred HHHhCCCeEEEEcCCCC-----Cc--EEEEEEEC
Confidence 2468999999983 43 55555553
No 21
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.43 E-value=0.017 Score=50.72 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=42.7
Q ss_pred eeccc--cC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 72 IPSTF--VM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf--~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
.|+++ .+ +.++.++.... .-++|+||..++.|+|+.++++.+++. ...+++||+||+.+
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~---g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 129 VVPGSDGVLKSLEEAKALAREI---GYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp BCCBCSSSCCCHHHHHHHHHHH---CSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred CCCCcccccCCHHHHHHHHHHc---CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 45555 34 34555555433 458999999999999999999876542 14689999999854
No 22
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=95.36 E-value=0.018 Score=50.58 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------
Q psy6987 48 TRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------ 119 (204)
Q Consensus 48 ~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------ 119 (204)
.+|..+.+.+++ .+.. .|++..+ +.++.++.... .-++|+||..++.|+|+.++++.+++.
T Consensus 122 ~dK~~~k~~l~~----~gip----~p~~~~~~~~~~~~~~~~~~---~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~ 190 (451)
T 2yrx_A 122 GSKAFAKELMKK----YGIP----TADHAAFTSYEEAKAYIEQK---GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAA 190 (451)
T ss_dssp HCHHHHHHHHHH----TTCC----BCCEEEESCHHHHHHHHHHH---CSSEEEEECC----CCEEEESSHHHHHHHHHHH
T ss_pred hCHHHHHHHHHH----cCCC----CCCeEEECCHHHHHHHHHhc---CCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 456555555544 2221 4666555 34555555433 458999999999999999999876542
Q ss_pred --------CccceEEEeccc
Q psy6987 120 --------LEESVVVAKYIE 131 (204)
Q Consensus 120 --------~~~~~vvQkYI~ 131 (204)
...+++||+||+
T Consensus 191 ~~~~~~g~~~~~~lvEe~i~ 210 (451)
T 2yrx_A 191 LVDGQFGTAGSQVVIEEYLE 210 (451)
T ss_dssp HHHSCCBTTBCCEEEEECCC
T ss_pred HhccccCCCCCeEEEEECCc
Confidence 136899999998
No 23
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=95.34 E-value=0.0089 Score=50.66 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=40.3
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEEec
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVTS 151 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s 151 (204)
.-++|+||..+..|.||.++++.+++. ...+++||+||+ |+ ++++.++...
T Consensus 165 ~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~ 223 (343)
T 1e4e_A 165 TYPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNS 223 (343)
T ss_dssp CSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEET
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCC
Confidence 458999999999999999999987753 246899999997 54 5666666543
No 24
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=95.32 E-value=0.033 Score=48.96 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=42.5
Q ss_pred eeccc--cC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 72 IPSTF--VM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf--~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
.|+++ .+ +.++.++.... .-++|+||..++.|+|+.++++.+++. ...+++||+||+.+
T Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~---g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 135 VIPGSDGPVDGLEDVVAFAEAH---GYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp BCCBCSSCCSSHHHHHHHHHHH---CSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred CCCCcccCcCCHHHHHHHHHhc---CCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 45554 33 34455554432 458999999999999999999987753 13679999999854
No 25
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.32 E-value=0.0086 Score=51.31 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=44.5
Q ss_pred eeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------------CccceEEEecccCCcccC
Q psy6987 72 IPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------------LEESVVVAKYIEKPLLVE 137 (204)
Q Consensus 72 ~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------------~~~~~vvQkYI~~p~Li~ 137 (204)
.|++..+ +.++.++.... .-++|+||..++.|+|+.++++.+++. ...+++||+||+.
T Consensus 128 ~p~~~~~~~~~~~~~~~~~~---g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~----- 199 (391)
T 1kjq_A 128 TSTYRFADSESLFREAVADI---GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF----- 199 (391)
T ss_dssp BCCEEEESSHHHHHHHHHHH---CSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----
T ss_pred CCCeeeeCCHHHHHHHHHhc---CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----
Confidence 4565554 34444544433 458999999999999999999987653 1468999999983
Q ss_pred CcceeeEEEEEEe
Q psy6987 138 GHKCDLRLYVVVT 150 (204)
Q Consensus 138 grKFDiR~yvlv~ 150 (204)
|+ ++++.++..
T Consensus 200 g~--E~sv~~~~~ 210 (391)
T 1kjq_A 200 DF--EITLLTVSA 210 (391)
T ss_dssp SE--EEEEEEEEE
T ss_pred Ce--EEEEEEEEe
Confidence 32 455555543
No 26
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=95.26 E-value=0.013 Score=49.03 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCCccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
...++|+||..|+.|+|+.++++ ...++++|+||+ |+ ++++.++.
T Consensus 132 ~~~P~vvKP~~g~gs~Gv~~v~~-----~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 132 LDCKFIIKPRTACAGEGIGFSDE-----VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp CSSSEEEEESSCC----CBCCSS-----CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCEEEEec-----CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 34689999999999999999988 467899999998 44 45555554
No 27
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.24 E-value=0.029 Score=48.66 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=50.7
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~---- 119 (204)
...+|..+.+.+++ .+.. .|+++.+ +.++.++.... .-++|+||..++.|+|+.++++.+++.
T Consensus 99 ~~~dK~~~k~~l~~----~gip----~p~~~~~~~~~~~~~~~~~~---~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~ 167 (424)
T 2yw2_A 99 LEGSKAFAKTFMKK----YGIP----TARYEVFTDFEKAKEYVEKV---GAPIVVKADGLAAGKGAVVCETVEKAIETLD 167 (424)
T ss_dssp HHHCHHHHHHHHHH----TTCC----BCCEEEESCHHHHHHHHHHH---CSSEEEEESSCCTTCSEEEESSHHHHHHHHH
T ss_pred HHhCHHHHHHHHHH----cCCC----CCCeEEECCHHHHHHHHHHc---CCcEEEEeCCCCCCCCEEEECCHHHHHHHHH
Confidence 34577766666554 2221 4666555 34555555433 358999999999999999999876542
Q ss_pred ---C-------ccceEEEeccc
Q psy6987 120 ---L-------EESVVVAKYIE 131 (204)
Q Consensus 120 ---~-------~~~~vvQkYI~ 131 (204)
. ..+++||+||+
T Consensus 168 ~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 168 RFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp HHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHhhhhccCCCCeEEEEECCC
Confidence 1 26899999997
No 28
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=95.16 E-value=0.0084 Score=56.73 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=54.6
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHH-hCCCCcEEEcCCCCCCCCceEEe----CCCCCCC---
Q psy6987 48 TRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISH-YRTRGPWIVKPVASSRGRGIYIV----DTPDEVP--- 119 (204)
Q Consensus 48 ~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~-~~~~~~wI~KP~~~~rG~GI~~~----~~~~~i~--- 119 (204)
.+|....+.|++. |.. +|++..+... ++..... .....+.|+||..|+.|+||.++ .+.+++.
T Consensus 488 ~DK~~tk~lL~~~----GIP----vP~~~~~~~~-~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al 558 (757)
T 3ln7_A 488 ENKVVTKKVLQKA----GFN----VPQSVEFTSL-EKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKAL 558 (757)
T ss_dssp HHSHHHHHHHHHH----TCC----CCCEEEESCH-HHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHC----CcC----CCCEEEECCH-HHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHH
Confidence 4666666666552 321 5666655332 2222222 23456999999999999999998 5555442
Q ss_pred -----CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 -----LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 -----~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
....++||+||+ | .|+|+.|+
T Consensus 559 ~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 559 EIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp HHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred HHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 146799999994 5 38888776
No 29
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=95.15 E-value=0.077 Score=49.05 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=49.9
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCC-------
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEV------- 118 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i------- 118 (204)
++.+|..|.-+...+ +.+ .++|.|++-+.. . +. . .-||+||..|..|.||.+.+..++.
T Consensus 494 llsNKailalLw~l~-----p~h-p~LLpT~f~~~~--~-l~-~----~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~ 559 (619)
T 2io8_A 494 IPGNKAILPILWSLF-----PHH-RYLLDTDFTVND--E-LV-K----TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGK 559 (619)
T ss_dssp TTTSTTHHHHHHHHS-----TTC-TTCCCEESSCCH--H-HH-H----HCEEEEETTCCTTTTCEEECTTSCEEEECCCT
T ss_pred HhhhHHHHHHHHHhC-----CCC-CCCCCeeecCCc--c-cc-c----CCEEEccCCCCCCCCEEEEeCCChhHhhcccc
Confidence 478898887766653 122 356666643332 1 11 1 2499999999999999999862221
Q ss_pred CCccceEEEecccCCc
Q psy6987 119 PLEESVVVAKYIEKPL 134 (204)
Q Consensus 119 ~~~~~~vvQkYI~~p~ 134 (204)
...+.+|.|+|++.|-
T Consensus 560 y~~~~~IyQe~~~lp~ 575 (619)
T 2io8_A 560 FAEQKNIYQQLWCLPK 575 (619)
T ss_dssp TTTSCEEEEECCCCCE
T ss_pred ccCCCeEEEEecCCCC
Confidence 1257899999999773
No 30
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=95.13 E-value=0.013 Score=50.90 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=51.2
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC---
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL--- 120 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--- 120 (204)
...+|..+.+.+++. +.. .|++..+ +.++.++.... .-++|+||..++.|+|+.++++.+++..
T Consensus 99 ~~~dK~~~k~~l~~~----gip----~p~~~~~~~~~~~~~~~~~~---~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 99 IEGSKQFAKDLMKKY----DIP----TAEYETFTSFDEAKAYVQEK---GAPIVIKADGLAAGKGVTVAMTEEEAIACLH 167 (422)
T ss_dssp HHHCHHHHHHHHHHT----TCC----BCCEEEESCHHHHHHHHHHH---CSSEEEEESSCGGGTCEEEESSHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHc----CCC----CCCeEEECCHHHHHHHHHhc---CCCEEEEeCCCCCCCcEEEECCHHHHHHHHH
Confidence 345777776666652 221 4666555 34555555433 3589999999999999999998665421
Q ss_pred -----------ccceEEEeccc
Q psy6987 121 -----------EESVVVAKYIE 131 (204)
Q Consensus 121 -----------~~~~vvQkYI~ 131 (204)
..+++||+||+
T Consensus 168 ~~~~~~~~g~~~~~~lvEe~i~ 189 (422)
T 2xcl_A 168 DFLEDEKFGDASASVVIEEYLS 189 (422)
T ss_dssp HHHTSCTTGGGGSSEEEEECCC
T ss_pred HHHhhhhccCCCCeEEEEECCc
Confidence 36899999997
No 31
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=94.98 E-value=0.025 Score=49.53 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=42.3
Q ss_pred eeccc--cC--hhHH-HHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccC
Q psy6987 72 IPSTF--VM--PGDF-RELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEK 132 (204)
Q Consensus 72 ~P~Tf--~l--~~~~-~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~ 132 (204)
.|+++ .+ +.++ .++.... .-++|+||..++.|+|+.++++.+++. ...+++||+||+.
T Consensus 130 ~p~~~~~~~~~~~~~~~~~~~~~---g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 206 (449)
T 2w70_A 130 CVPGSDGPLGDDMDKNRAIAKRI---GYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN 206 (449)
T ss_dssp BCSBCSSCCCSCHHHHHHHHHHH---CSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS
T ss_pred cCCCcccccCCHHHHHHHHHHHh---CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC
Confidence 45554 33 3455 5555433 458999999999999999999876542 1468999999985
Q ss_pred C
Q psy6987 133 P 133 (204)
Q Consensus 133 p 133 (204)
+
T Consensus 207 ~ 207 (449)
T 2w70_A 207 P 207 (449)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=94.98 E-value=0.0064 Score=52.86 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCC--------ccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPL--------EESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------~~~~vvQkYI~ 131 (204)
..-++|+||..+..|.||.++++.+++.. ...++||+||+
T Consensus 200 lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~ 247 (383)
T 3k3p_A 200 LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD 247 (383)
T ss_dssp CCSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 35689999999999999999999877531 46899999997
No 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=94.94 E-value=0.053 Score=47.08 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=41.5
Q ss_pred eeccccCh----hHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCC------CccceEEEeccc
Q psy6987 72 IPSTFVMP----GDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVP------LEESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~----~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~------~~~~~vvQkYI~ 131 (204)
.|+++.+. .++.++.... .-++|+||..++ .|+|+.++++.+++. ...+++||+||+
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~---g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 205 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQL---GYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY 205 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHHH---CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHh---CCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC
Confidence 55555553 3444444332 458999998886 999999999988863 257899999997
No 34
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=94.87 E-value=0.007 Score=50.48 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=28.6
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC-------------CccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP-------------LEESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~-------------~~~~~vvQkYI~ 131 (204)
..++|+||..++.|+||.++++.+++. ...+++||+||+
T Consensus 126 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~ 177 (334)
T 2r85_A 126 EKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL 177 (334)
T ss_dssp CSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC
Confidence 368999999999999999999876542 126899999998
No 35
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.81 E-value=0.016 Score=49.40 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVP---- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~---- 119 (204)
..+|..+.+.+++. +.. .|++..+. .++.++. ....-++|+||..++ .|+|+.++++.+++.
T Consensus 94 ~~dK~~~k~~l~~~----gip----~p~~~~~~~~~~~~~~~---~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~ 162 (369)
T 3aw8_A 94 AQDRLREKTFFQGL----GVP----TPPFHPVDGPEDLEEGL---KRVGLPALLKTRRGGYDGKGQALVRTEEEALEALK 162 (369)
T ss_dssp HTCHHHHHHHHHHH----TCC----CCCEEEESSHHHHHHHH---TTTCSSEEEEECCC------EEEECSHHHHHHHHT
T ss_pred hcCHHHHHHHHHHC----CCC----CCCceeeCCHHHHHHHH---HHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHH
Confidence 45565555555542 221 45555543 3333332 234569999999999 999999999876542
Q ss_pred --CccceEEEeccc
Q psy6987 120 --LEESVVVAKYIE 131 (204)
Q Consensus 120 --~~~~~vvQkYI~ 131 (204)
...+++||+||+
T Consensus 163 ~~~~~~~lvEe~i~ 176 (369)
T 3aw8_A 163 ALGGRGLILEGFVP 176 (369)
T ss_dssp TTCSSSEEEEECCC
T ss_pred hcCCCcEEEEEcCC
Confidence 257899999998
No 36
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=94.80 E-value=0.0093 Score=50.79 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=21.0
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCCCc-----cceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVPLE-----ESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~~~-----~~~vvQkYI~ 131 (204)
.+-+.|+||..++.|+|+.++++ +++... .++|||+||+
T Consensus 124 i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 124 PDELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SSCCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred cCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 35689999999999999999999 877531 4789999998
No 37
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=94.79 E-value=0.054 Score=48.28 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=51.8
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC-----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----- 119 (204)
..+|..+.+.+++ .|.. +|+++.+. .++.++.. ...-+.|+||..++.|+|+.++++.+++.
T Consensus 137 ~~DK~~~k~~l~~----~GIp----vp~~~~v~s~ee~~~~~~---~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~ 205 (474)
T 3vmm_A 137 ARDKNKMRDAFNK----AGVK----SIKNKRVTTLEDFRAALE---EIGTPLILKPTYLASSIGVTLITDTETAEDEFNR 205 (474)
T ss_dssp TTCHHHHHHHHHH----TTSC----CCCEEEECSHHHHHHHHH---HSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHH
T ss_pred hhCHHHHHHHHHH----cCCC----CCCeEEECCHHHHHHHHH---HcCCCEEEEECCCCcCceEEEECCHHHHHHHHHH
Confidence 5566666665554 2221 56665553 33434333 34568999999999999999999988752
Q ss_pred ---------------CccceEEEecccCC
Q psy6987 120 ---------------LEESVVVAKYIEKP 133 (204)
Q Consensus 120 ---------------~~~~~vvQkYI~~p 133 (204)
....++||+||+.+
T Consensus 206 ~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 206 VNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 13689999999865
No 38
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=94.71 E-value=0.011 Score=49.01 Aligned_cols=74 Identities=26% Similarity=0.309 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccChh--HHHH-HHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC---
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPG--DFRE-LTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL--- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~--~~~~-~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--- 120 (204)
..+|..+.+.+++ .+.. +|+|+.+.. +... +.... .-++|+||..++.|+||.++++.+++..
T Consensus 95 ~~dK~~~~~~l~~----~Gip----~p~~~~~~~~~~~~~~~~~~~---~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~ 163 (307)
T 3r5x_A 95 CMDKNISKKILRY----EGIE----TPDWIELTKMEDLNFDELDKL---GFPLVVKPNSGGSSVGVKIVYDKDELISMLE 163 (307)
T ss_dssp HHCHHHHHHHHHH----TTCC----CCCEEEEESSSCCCHHHHHHH---CSSEEEEECC----CCCEEECSHHHHHHHHH
T ss_pred HcCHHHHHHHHHH----CCCC----CCCEEEEeChhhhhHHHHHhc---CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHH
Confidence 4556655555554 2221 566666532 2221 33322 3589999999999999999998776531
Q ss_pred -----ccceEEEeccc
Q psy6987 121 -----EESVVVAKYIE 131 (204)
Q Consensus 121 -----~~~~vvQkYI~ 131 (204)
..+++||+||+
T Consensus 164 ~~~~~~~~~lvee~i~ 179 (307)
T 3r5x_A 164 TVFEWDSEVVIEKYIK 179 (307)
T ss_dssp HHHHHCSEEEEEECCC
T ss_pred HHHhcCCCEEEECCcC
Confidence 47899999998
No 39
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=94.70 E-value=0.014 Score=50.84 Aligned_cols=57 Identities=25% Similarity=0.431 Sum_probs=34.9
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------------CccceEEEeccc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------------LEESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------------~~~~~vvQkYI~ 131 (204)
.|++..+. .++.++.... .-++|+||..++.|+|+.++++.+++. ...+++||+||+
T Consensus 136 ~p~~~~~~~~~~~~~~~~~~---g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 136 TSRYMYATTLDELYEACEKI---GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206 (433)
T ss_dssp CCCEEEESSHHHHHHHHHHH---CSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCC
T ss_pred CCCeeEeCCHHHHHHHHHhc---CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCC
Confidence 45655543 3444444432 458999999999999999999977642 146799999998
No 40
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=94.63 E-value=0.082 Score=45.40 Aligned_cols=57 Identities=12% Similarity=0.282 Sum_probs=41.6
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCC-CCceEEeCCCCCCCC------ccceEEEeccc
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSR-GRGIYIVDTPDEVPL------EESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~r-G~GI~~~~~~~~i~~------~~~~vvQkYI~ 131 (204)
.|+++.+. .++.++.... .-++|+||..+.. |+|+.++++.+++.. ..+++||+||+
T Consensus 127 ~p~~~~~~~~~~~~~~~~~~---g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~ 192 (389)
T 3q2o_A 127 VATYRLVQNQEQLTEAIAEL---SYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP 192 (389)
T ss_dssp CCCEEEESSHHHHHHHHHHH---CSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC
T ss_pred CCCeEEECCHHHHHHHHHhc---CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc
Confidence 55665553 3444444433 4589999999864 899999999887642 46899999998
No 41
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=94.58 E-value=0.041 Score=48.16 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------------CccceEEEecccCC
Q psy6987 80 GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------------LEESVVVAKYIEKP 133 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------------~~~~~vvQkYI~~p 133 (204)
.++.++.... .-++|+||..++.|+|+.++++.+++. ....++||+||+.+
T Consensus 141 ~~~~~~~~~~---g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 2vpq_A 141 SEAKKIAKKI---GYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF 205 (451)
T ss_dssp HHHHHHHHHH---CSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE
T ss_pred HHHHHHHHhc---CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC
Confidence 4555554433 458999999999999999999876542 13689999999854
No 42
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=94.51 E-value=0.031 Score=49.10 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL---- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~---- 120 (204)
..+|..+.+.+++ .+.. .|++..+ +.+..++.... .-++|+||..++.|+|+.++++.+++..
T Consensus 105 ~~dK~~~k~~l~~----~GIp----tp~~~~~~~~~ea~~~~~~~---g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~ 173 (431)
T 3mjf_A 105 EGSKAFTKDFLAR----HNIP----SAEYQNFTDVEAALAYVRQK---GAPIVIKADGLAAGKGVIVAMTQEEAETAVND 173 (431)
T ss_dssp HHCHHHHHHHHHH----TTCS----BCCEEEESCHHHHHHHHHHH---CSSEEEEESSSCTTCSEEEECSHHHHHHHHHH
T ss_pred hhCHHHHHHHHHH----cCCC----CCCeEeeCCHHHHHHHHHHc---CCeEEEEECCCCCCCcEEEeCCHHHHHHHHHH
Confidence 4566655555554 2221 4666555 34555555433 4689999999999999999999766421
Q ss_pred ----------ccceEEEeccc
Q psy6987 121 ----------EESVVVAKYIE 131 (204)
Q Consensus 121 ----------~~~~vvQkYI~ 131 (204)
...++||+||+
T Consensus 174 ~~~~~~~g~~~~~vlvEe~i~ 194 (431)
T 3mjf_A 174 MLAGNAFGDAGHRIVVEEFLD 194 (431)
T ss_dssp HHTTHHHHCCCCCEEEEECCC
T ss_pred HHhhccccCCCCeEEEEEeeC
Confidence 35899999998
No 43
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=94.49 E-value=0.021 Score=48.82 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=34.4
Q ss_pred CCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 91 RTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 91 ~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
...-++|+||..+..|+|+.++++.+++. ....+++|+||+
T Consensus 175 ~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~ 223 (357)
T 4fu0_A 175 NLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN 223 (357)
T ss_dssp HCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC
T ss_pred hcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC
Confidence 34679999999999999999999977653 256789999986
No 44
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=94.49 E-value=0.017 Score=49.72 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=41.8
Q ss_pred eeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCC-CCCceEEeCCCCCCCC------ccceEEEeccc
Q psy6987 72 IPSTFVM--PGDFRELTISHYRTRGPWIVKPVASS-RGRGIYIVDTPDEVPL------EESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~-rG~GI~~~~~~~~i~~------~~~~vvQkYI~ 131 (204)
.|++..+ ..++.++... ..-++|+||..+. .|+|+.++++.+++.. ..+++||+||+
T Consensus 125 ~p~~~~~~~~~~~~~~~~~---~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~ 190 (377)
T 3orq_A 125 VVPFISVKESTDIDKAIET---LGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN 190 (377)
T ss_dssp BCCEEEECSSTHHHHHHHH---TCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC
T ss_pred CCCeEEECCHHHHHHHHHH---cCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC
Confidence 4455444 2455555443 3468999999986 8999999999988642 47899999998
No 45
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=94.39 E-value=0.042 Score=46.70 Aligned_cols=103 Identities=19% Similarity=0.383 Sum_probs=67.6
Q ss_pred cCCCcEEcccCCCccccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHH-----HHHHH-------HhCCCCcEEEc
Q psy6987 32 LAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFR-----ELTIS-------HYRTRGPWIVK 99 (204)
Q Consensus 32 l~~~Q~vNh~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~-----~~~~~-------~~~~~~~wI~K 99 (204)
++.-=.||..+-...+..|-..+..|++. +. =+|+|.++..+-. +++.. -.....++|.|
T Consensus 80 lr~p~~INd~~~q~~~~DK~~~~~iL~~~----gI----PtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeK 151 (330)
T 3t7a_A 80 LRNPFVINDLNMQYLIQDRREVYSILQAE----GI----LLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEK 151 (330)
T ss_dssp HHCCEESBCSTHHHHHTBHHHHHHHHHHT----TC----CCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEE
T ss_pred HhCCceeCCHHHHHHHHHHHHHHHHHHHc----CC----CCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEc
Confidence 33444689988888899999988888872 21 2677777643210 11100 01123689999
Q ss_pred CCCCC-----------CCCce-EEeCCCC----------CCCCccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 100 PVASS-----------RGRGI-YIVDTPD----------EVPLEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 100 P~~~~-----------rG~GI-~~~~~~~----------~i~~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
|..|+ +|-|. .+++... .+.....+++|+||.. +| =|||+||+
T Consensus 152 Pv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 152 PVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp ESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred ccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 99986 77777 4554321 2345789999999985 46 69999998
No 46
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=94.37 E-value=0.025 Score=49.85 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=50.0
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC-----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----- 119 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----- 119 (204)
..+|..+.+.++++ +.. .|++..+. .+..++... ..-++|+||..++.|+|+.++++.+++.
T Consensus 121 ~~dK~~~k~~l~~~----GIp----~p~~~~~~~~~ea~~~~~~---~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~ 189 (442)
T 3lp8_A 121 ESSKGFTKELCMRY----GIP----TAKYGYFVDTNSAYKFIDK---HKLPLVVKADGLAQGKGTVICHTHEEAYNAVDA 189 (442)
T ss_dssp HHCHHHHHHHHHHH----TCC----BCCEEEESSHHHHHHHHHH---SCSSEEEEESSCCTTTSEEEESSHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHC----CCC----CCCEEEECCHHHHHHHHHH---cCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHH
Confidence 45666666655542 221 46665553 344444432 3568999999999999999999876542
Q ss_pred ---------CccceEEEeccc
Q psy6987 120 ---------LEESVVVAKYIE 131 (204)
Q Consensus 120 ---------~~~~~vvQkYI~ 131 (204)
....++||+||+
T Consensus 190 ~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 190 MLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp HHTSCTTGGGGSSEEEEECCC
T ss_pred HHhhcccCCCCCeEEEEEeec
Confidence 126899999998
No 47
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=94.31 E-value=0.017 Score=50.12 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred eeccccChh------HHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 72 IPSTFVMPG------DFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l~~------~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
+|++..+.. ++.++.... .-++|+||..+..|.||.++++.+++. ....++||+||+
T Consensus 174 ~p~~~~~~~~~~~~~~~~~~~~~l---g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 174 VAPFVCFDRHTAAHADVDTLIAQL---GLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp BCCEEEEEHHHHTTCCHHHHHHHH---CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCEEEEeCcccchhhHHHHHHhc---CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 566666643 233333322 458999999999999999999988753 256899999998
No 48
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=94.30 E-value=0.038 Score=48.49 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCc-EEEcCCCCCCCCceEEeCCCCCCC---
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGP-WIVKPVASSRGRGIYIVDTPDEVP--- 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~-wI~KP~~~~rG~GI~~~~~~~~i~--- 119 (204)
...+|..+.+.+++ .+.. .|++..+ +.++.++... ..-+ +|+||..++.|+|+.++++.+++.
T Consensus 125 ~~~dK~~~k~~l~~----~gip----~p~~~~~~~~~~~~~~~~~---~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~ 193 (452)
T 2qk4_A 125 LESSKRFAKEFMDR----HGIP----TAQWKAFTKPEEACSFILS---ADFPALVVKASGLAAGKGVIVAKSKEEACKAV 193 (452)
T ss_dssp HHHBHHHHHHHHHH----TTCC----BCCEEEESSHHHHHHHHHH---CSSCEEEEEESBC---CCEEECSSHHHHHHHH
T ss_pred HhcCHHHHHHHHHH----CCCC----CCCeEEECCHHHHHHHHHh---CCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHH
Confidence 34677776666654 2221 4555544 3344444432 3458 999999999999999999866532
Q ss_pred ----C-------ccceEEEeccc
Q psy6987 120 ----L-------EESVVVAKYIE 131 (204)
Q Consensus 120 ----~-------~~~~vvQkYI~ 131 (204)
. ..+++||+||+
T Consensus 194 ~~~~~~~~~g~~~~~~lvEe~i~ 216 (452)
T 2qk4_A 194 QEIMQEKAFGAAGETIVIEELLD 216 (452)
T ss_dssp HHHTTC-------CCEEEEECCC
T ss_pred HHHHhhhhccCCCCeEEEEECCC
Confidence 1 36899999998
No 49
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=94.17 E-value=0.016 Score=48.79 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=33.1
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
.-++|+||..++.|.|+.++++.+++. ...+++||+||+
T Consensus 150 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~ 196 (322)
T 2fb9_A 150 DPPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS 196 (322)
T ss_dssp CSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 458999999999999999999876643 246899999997
No 50
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=94.05 E-value=0.039 Score=47.52 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=34.3
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
..-++|+||..+..|.|+.++++.+++. ...+++||+||+
T Consensus 184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~ 231 (367)
T 2pvp_A 184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ 231 (367)
T ss_dssp SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT
T ss_pred cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3559999999999999999999988763 246899999997
No 51
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=93.92 E-value=0.017 Score=53.95 Aligned_cols=51 Identities=29% Similarity=0.508 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 80 GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
.++.++.. ...-+.|+||..|+.|+|+.++++.+++.. ...++||+||+.|
T Consensus 168 ~e~~~~a~---~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 168 ETFRREAG---RIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp THHHHHHH---HSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred HHHHHHHH---hCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 44444443 235689999999999999999999887521 4579999999976
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=93.91 E-value=0.019 Score=49.42 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
.-++|+||..+..|.||.++++.+++. ....++||+||+-. + ++++-++.
T Consensus 174 g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~G~-----~--E~~v~vl~ 231 (377)
T 1ehi_A 174 GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGA-----R--ELEVGVIG 231 (377)
T ss_dssp CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCCCS-----C--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCC-----c--eEEEEEEc
Confidence 458999999999999999999976642 24689999999731 3 45555554
No 53
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=93.87 E-value=0.029 Score=48.09 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEE
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVV 149 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv 149 (204)
.-++|+||..+..|.||.++++.+++. ....++||+||+ |+ ++++-++.
T Consensus 179 g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~ 235 (364)
T 3i12_A 179 GLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK------GR--EIECAVLG 235 (364)
T ss_dssp CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC------Ce--EEEEEEEe
Confidence 358999999999999999999987653 146899999997 54 55555554
No 54
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=93.73 E-value=0.081 Score=44.84 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=29.2
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC-ccceEEEeccc
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL-EESVVVAKYIE 131 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~-~~~~vvQkYI~ 131 (204)
.-++|+||..++.|+|+.++++.+++.. ...+++|+||+
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------CCCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhhhccchhhhhhcc
Confidence 4589999999999999999999887753 56789999986
No 55
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=93.71 E-value=0.11 Score=48.34 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCceeccccChhHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC------
Q psy6987 46 ELTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP------ 119 (204)
Q Consensus 46 ~l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~------ 119 (204)
++.+|..|.-+=..+. .+ .+++.||+-+... ... .-|++||..|-.|.||.+.....+..
T Consensus 509 LlsNKaiLalLW~l~p-----~h-p~LLpt~f~~~~~---~~~-----~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~ 574 (652)
T 2vob_A 509 IPSNKAILPMIYHNHP-----EH-PAILKAEYELTDE---LRK-----HGYAKKPIVGRVGSNVIITSGDGVVHAESGGK 574 (652)
T ss_dssp TTTSTTHHHHHHHHCT-----TC-TTBCCEESSCCHH---HHH-----HCEEEEECC-----------------------
T ss_pred hhcCHHHHHHHHhccc-----CC-CCCCchhhcCCCc---ccc-----CCeEeccCCCCCCCCEEEEcCCchhhhhcccc
Confidence 5678877666444321 22 3566666443331 111 24999999999999999987533321
Q ss_pred -CccceEEEecccCCcccCCcceeeEEEEE
Q psy6987 120 -LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148 (204)
Q Consensus 120 -~~~~~vvQkYI~~p~Li~grKFDiR~yvl 148 (204)
..+++|+|+|++-| .++|.-.-+.+|++
T Consensus 575 y~~~~~IyQe~~~lp-~f~~~~~~iG~~lv 603 (652)
T 2vob_A 575 YGKRNMIYQQLFELK-KQDDYYAIIGGWMI 603 (652)
T ss_dssp ----CEEEEECCC---CBTTBCCEEEEEEE
T ss_pred cCCCCeEEEecccCC-ccCCcceEEEEEEE
Confidence 25789999999977 45655455555543
No 56
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=93.70 E-value=0.044 Score=50.33 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC----------ccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL----------EESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~----------~~~~vvQkYI~~p 133 (204)
.-++|+||..|..|+||.++++.+++.. ...++||+||+.|
T Consensus 244 GyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~ 294 (587)
T 3jrx_A 244 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA 294 (587)
T ss_dssp CSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred CCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 5689999999999999999999988631 4689999999864
No 57
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=93.69 E-value=0.024 Score=48.11 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
.-++|+||..+..|.||.++++.+++. ...+++||+||+ |+ ++++.++..
T Consensus 165 g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~ 222 (346)
T 3se7_A 165 TYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGN 222 (346)
T ss_dssp CSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEE
T ss_pred CCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEec
Confidence 458999999999999999999977653 256899999997 54 666666654
No 58
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=93.68 E-value=0.029 Score=48.40 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=39.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEecccCCcccCCcceeeEEEEEEe
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVVVT 150 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~~p~Li~grKFDiR~yvlv~ 150 (204)
.-++|+||..+..|.||.++++.+++. ....++||+||+ |+ ++++-++..
T Consensus 188 g~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~ 245 (373)
T 3lwb_A 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GR--ELECGVLEM 245 (373)
T ss_dssp CSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EE--EEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------Ce--EEEEEEEEC
Confidence 458999999999999999999988763 256899999998 54 455555543
No 59
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=93.67 E-value=0.15 Score=46.33 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=31.3
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC----------ccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL----------EESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~----------~~~~vvQkYI~~p 133 (204)
.-++|+||..|..|+|+.++++.+++.. ...++||+||+.|
T Consensus 228 gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~ 278 (540)
T 3glk_A 228 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA 278 (540)
T ss_dssp CSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 4689999999999999999999988631 4689999999853
No 60
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=93.63 E-value=0.026 Score=52.69 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=3.2
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
.-+.|+||..|+.|+|+.++++.+++.. ...++||+||+.|
T Consensus 152 gyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~ 206 (681)
T 3n6r_A 152 GYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206 (681)
T ss_dssp ---------------------------------------------------CCSC
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Confidence 4589999999999999999999877632 3579999999976
No 61
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=93.45 E-value=0.048 Score=47.32 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=47.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCceeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCCC----
Q psy6987 47 LTRKDRLYKNIEKMQHSKGFKHFDFIPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPL---- 120 (204)
Q Consensus 47 l~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~~---- 120 (204)
..+|..+.+.+++ .+.. .|++..+. .++.++. ....-++|+||..++.|+|+.++++.+++..
T Consensus 104 ~~dK~~~k~~l~~----~gip----~p~~~~~~~~~e~~~~~---~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~ 172 (412)
T 1vkz_A 104 EGSKVYAKRFMKK----YGIR----TARFEVAETPEELREKI---KKFSPPYVIKADGLARGKGVLILDSKEETIEKGSK 172 (412)
T ss_dssp HHCHHHHHHHHHH----TTCC----CCCEEEESSHHHHHHHH---TTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH----cCCC----CCCEEEECCHHHHHHHH---HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHH
Confidence 4566666555554 2221 35554442 3333333 2345699999999999999999998665421
Q ss_pred ----------ccceEEEeccc
Q psy6987 121 ----------EESVVVAKYIE 131 (204)
Q Consensus 121 ----------~~~~vvQkYI~ 131 (204)
..+++||+||+
T Consensus 173 ~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 173 LIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp HHHTSSSTTCCSCEEEEECCC
T ss_pred HHhhccccCCCCeEEEEECCc
Confidence 13899999997
No 62
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=93.41 E-value=0.05 Score=49.30 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p 133 (204)
.-++|+||..++.|+|+.++++.+++. ...+++||+||+.+
T Consensus 234 g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g~ 284 (554)
T 1w96_A 234 GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRA 284 (554)
T ss_dssp CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSC
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC
Confidence 468999999999999999999877653 14689999999853
No 63
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=93.00 E-value=0.036 Score=48.15 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=28.3
Q ss_pred CCCcEEEcCCCCCCCCceEEeCCCCCCC-------------------CccceEEEeccc
Q psy6987 92 TRGPWIVKPVASSRGRGIYIVDTPDEVP-------------------LEESVVVAKYIE 131 (204)
Q Consensus 92 ~~~~wI~KP~~~~rG~GI~~~~~~~~i~-------------------~~~~~vvQkYI~ 131 (204)
..-++|+||..|+.|+|+.++++.+++. ....+++|+||+
T Consensus 144 ~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~ 202 (425)
T 3vot_A 144 LSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID 202 (425)
T ss_dssp CCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC
T ss_pred cCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec
Confidence 3458999999999999999999976642 246799999997
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=92.18 E-value=0.063 Score=53.05 Aligned_cols=41 Identities=27% Similarity=0.549 Sum_probs=27.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
.-++|+||..|..|+|+.++++.+++.. ...++||+||+.|
T Consensus 155 GyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 155 GFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp CSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 4589999999999999999999888641 4678999999976
No 65
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=92.16 E-value=0.042 Score=47.47 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCc-EEEcCCCCCCCCceEEeCCCCCCC--------CccceEEEeccc
Q psy6987 93 RGP-WIVKPVASSRGRGIYIVDTPDEVP--------LEESVVVAKYIE 131 (204)
Q Consensus 93 ~~~-wI~KP~~~~rG~GI~~~~~~~~i~--------~~~~~vvQkYI~ 131 (204)
.-+ +|+||..+..|.||.++++.+++. ...+++||+||+
T Consensus 179 g~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 226 (372)
T 3tqt_A 179 GTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR 226 (372)
T ss_dssp ---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 457 999999999999999999977653 256899999998
No 66
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=91.98 E-value=0.052 Score=47.50 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=32.9
Q ss_pred CcEEEcCC-CCCCCCceEEeCCCCCCC------CccceEEEeccc
Q psy6987 94 GPWIVKPV-ASSRGRGIYIVDTPDEVP------LEESVVVAKYIE 131 (204)
Q Consensus 94 ~~wI~KP~-~~~rG~GI~~~~~~~~i~------~~~~~vvQkYI~ 131 (204)
-++|+||. .|+.|+|+.++++.+++. ...+++||+||+
T Consensus 172 ~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~ 216 (419)
T 4e4t_A 172 LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLP 216 (419)
T ss_dssp CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCC
Confidence 68999999 899999999999977653 357899999998
No 67
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=90.60 E-value=0.22 Score=42.68 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=51.9
Q ss_pred cccCCCccc---cchHHHHHHHHHHHhhcCCCCCCceeccccC--hhHHHHHHHHHhCCCCcEEEcCCCC-CCCCceEEe
Q psy6987 39 NHFPRSYEL---TRKDRLYKNIEKMQHSKGFKHFDFIPSTFVM--PGDFRELTISHYRTRGPWIVKPVAS-SRGRGIYIV 112 (204)
Q Consensus 39 Nh~p~~~~l---~~K~~l~~~l~~~~~~~~~~~~~~~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~-~rG~GI~~~ 112 (204)
.-.|+...+ .+|...-+.+++ .+.. .|++..+ ..++.++.... .-+.|+||..+ +.|+|+.++
T Consensus 66 ~v~p~~~a~~~~~DK~~~k~~l~~----~GIp----tp~~~~v~~~~e~~~~~~~~---G~P~VvKp~~~G~~GkGv~~v 134 (355)
T 3eth_A 66 PAFVNRDVFPIIADRLTQKQLFDK----LHLP----TAPWQLLAERSEWPAVFDRL---GELAIVKRRTGGYDGRGQWRL 134 (355)
T ss_dssp TTBTTTTHHHHHHSHHHHHHHHHH----TTCC----BCCEEEECCGGGHHHHHHHH---CSEEEEEESSSCCTTTTEEEE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHH----CccC----CCCEEEECCHHHHHHHHHHc---CCCEEEEecCCCCCCCeEEEE
Confidence 456665543 455555555443 2322 3333333 34555555433 46899999984 899999999
Q ss_pred CC--CCCCCCc--cceEEEeccc
Q psy6987 113 DT--PDEVPLE--ESVVVAKYIE 131 (204)
Q Consensus 113 ~~--~~~i~~~--~~~vvQkYI~ 131 (204)
++ .+++... ++++|++||+
T Consensus 135 ~~~~~~el~~a~~~~vivEe~I~ 157 (355)
T 3eth_A 135 RANETEQLPAECYGECIVEQGIN 157 (355)
T ss_dssp ETTCGGGSCGGGTTTEEEEECCC
T ss_pred cCCCHHHHHHHhhCCEEEEEccC
Confidence 99 7776431 1699999998
No 68
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=89.86 E-value=0.12 Score=50.64 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=32.6
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCC
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p 133 (204)
.|++..+. .++.++.... .-++|+||..+..|+|+.++.+.+++. ...+++||+||+.+
T Consensus 689 ~P~~~~~~s~eea~~~~~~i---g~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~ 759 (1073)
T 1a9x_A 689 QPANATVTAIEMAVEKAKEI---GYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA 759 (1073)
T ss_dssp CCCEEECCSHHHHHHHHHHH---CSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTC
T ss_pred CCCceEECCHHHHHHHHHHc---CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 56666553 3444444433 458999999999999999999876542 24689999999854
No 69
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=88.57 E-value=0.095 Score=52.13 Aligned_cols=40 Identities=25% Similarity=0.506 Sum_probs=0.6
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEK 132 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~ 132 (204)
.-+.|+||..++.|+|+.++++.+++.. ...++||+||+.
T Consensus 180 GyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 180 EYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp -----------------------------------------------------C
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 4589999999999999999999877531 357899999985
No 70
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=88.28 E-value=0.23 Score=48.68 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=42.6
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCCCCCCceEEeCCCCCCC----------CccceEEEecccCC
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVP----------LEESVVVAKYIEKP 133 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~~~~~~~~i~----------~~~~~vvQkYI~~p 133 (204)
+|+++.+. .++.++... ..-++|+||..+..|+|+.++++.+++. ...+++||+||+.+
T Consensus 143 vp~~~~v~~~~ea~~~~~~---ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~ 213 (1073)
T 1a9x_A 143 TARSGIAHTMEEALAVAAD---VGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW 213 (1073)
T ss_dssp CCSEEEESSHHHHHHHHHH---HCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS
T ss_pred CCCEEEECCHHHHHHHHHH---cCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC
Confidence 46666653 344444432 2458999999999999999999977653 13589999999854
No 71
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=87.80 E-value=0.1 Score=51.55 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=4.6
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC--------------ccceEEEecccCC
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL--------------EESVVVAKYIEKP 133 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~--------------~~~~vvQkYI~~p 133 (204)
.-++|+||..++.|+|+.++++.+++.. ...++||+||+.+
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg 225 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA 225 (1165)
T ss_dssp -------------------------------------------------CCCSSE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCC
Confidence 4589999999999999999999876531 3568999999853
No 72
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=86.46 E-value=0.12 Score=44.55 Aligned_cols=38 Identities=29% Similarity=0.484 Sum_probs=29.0
Q ss_pred CcEEEcCCCCCCCCceEEeCCCCCCCC-------------c--cceEEEeccc
Q psy6987 94 GPWIVKPVASSRGRGIYIVDTPDEVPL-------------E--ESVVVAKYIE 131 (204)
Q Consensus 94 ~~wI~KP~~~~rG~GI~~~~~~~~i~~-------------~--~~~vvQkYI~ 131 (204)
-+.|+||..++.|+|+.++++.+++.. . .++|||+||+
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 589999999999999999999766421 2 4689999998
No 73
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=76.03 E-value=0.43 Score=38.14 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred eeccccCh--hHHHHHHHHHhCCCCcEEEcCCCC-----CCCCceEE-eCCCCCCCC-----------------ccceEE
Q psy6987 72 IPSTFVMP--GDFRELTISHYRTRGPWIVKPVAS-----SRGRGIYI-VDTPDEVPL-----------------EESVVV 126 (204)
Q Consensus 72 ~P~Tf~l~--~~~~~~~~~~~~~~~~wI~KP~~~-----~rG~GI~~-~~~~~~i~~-----------------~~~~vv 126 (204)
+|++..+. .+..+... ...-+.++||..+ +.|.|+.+ +++.+++.. ...++|
T Consensus 36 ~p~~~~~~~~~ea~~~a~---~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlV 112 (238)
T 1wr2_A 36 VPEEKLAKTLDEALEYAK---EIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLV 112 (238)
T ss_dssp CCCCEEESSHHHHHHHHH---HHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEE
T ss_pred CCCeEEeCCHHHHHHHHH---HhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEE
Confidence 55555553 33333322 2246899999988 66778888 688765421 267999
Q ss_pred Eeccc
Q psy6987 127 AKYIE 131 (204)
Q Consensus 127 QkYI~ 131 (204)
|+||+
T Consensus 113 Ee~i~ 117 (238)
T 1wr2_A 113 APMLK 117 (238)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99998
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=59.33 E-value=26 Score=30.59 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=55.4
Q ss_pred CCcEEEcCCCCCCCCceEEeCCCCCCCC-----------------ccceEEEecccCCcccCCcceeeEEEEEEeccCCe
Q psy6987 93 RGPWIVKPVASSRGRGIYIVDTPDEVPL-----------------EESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPL 155 (204)
Q Consensus 93 ~~~wI~KP~~~~rG~GI~~~~~~~~i~~-----------------~~~~vvQkYI~~p~Li~grKFDiR~yvlv~s~~pl 155 (204)
+-.-|+|.++|.-|.||..+++.+++.. -...|||+=|..=-.++|--- +|
T Consensus 277 ~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avA-----------EP- 344 (432)
T 3k1t_A 277 EPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVA-----------EP- 344 (432)
T ss_dssp CCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEE-----------EE-
T ss_pred CceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccc-----------cc-
Confidence 4457999999999999999999988752 357999998874444454311 12
Q ss_pred EEEEec----ccEEeecCCCCCCCCCCCCCcccccc
Q psy6987 156 IIYMYE----EGLVRFATVKYDSGRKHLWNPCMHLC 187 (204)
Q Consensus 156 ~~y~~~----~g~~r~~~~~y~~~~~~~~~~~~HlT 187 (204)
.||+-+ .|+-|..++.=. .+||+.+-||..
T Consensus 345 VVYmid~~vvGgFyRvh~~rg~--dENLNapGm~F~ 378 (432)
T 3k1t_A 345 VIYMMDHFVVGGFYRVHTSRGA--DENLNAPGMHFE 378 (432)
T ss_dssp EEEEETTEEEEEEEEEESCCST--TTTTSCCTTCEE
T ss_pred eEEEECCEEEEEEEEecCCCCC--ccCCCCCCCEee
Confidence 345544 467788776433 345777777753
No 75
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=49.07 E-value=28 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=29.3
Q ss_pred EEEEeccCCeEEEEecccEEeecCCCCCCCCCC
Q psy6987 146 YVVVTSYDPLIIYMYEEGLVRFATVKYDSGRKH 178 (204)
Q Consensus 146 yvlv~s~~pl~~y~~~~g~~r~~~~~y~~~~~~ 178 (204)
|+++++.+.+-+|+++.--+...+.+|-.+.++
T Consensus 33 W~~v~H~SGmP~YlH~~trV~T~SrPY~lG~gs 65 (79)
T 3le4_A 33 WIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGS 65 (79)
T ss_dssp EEEEECTTSSEEEEETTTTEEESSCCCCCTTSC
T ss_pred cEEEEecCCceEEEeccceEEeccCCeEecCCc
Confidence 899999999999999999999999999986543
No 76
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=35.37 E-value=11 Score=32.67 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=35.1
Q ss_pred eeccccC--hhHHHHHHHHHhCCCCcEEEcCCCCCCCC----ceEEeCCCCCCC-------C-------ccceEEEeccc
Q psy6987 72 IPSTFVM--PGDFRELTISHYRTRGPWIVKPVASSRGR----GIYIVDTPDEVP-------L-------EESVVVAKYIE 131 (204)
Q Consensus 72 ~P~Tf~l--~~~~~~~~~~~~~~~~~wI~KP~~~~rG~----GI~~~~~~~~i~-------~-------~~~~vvQkYI~ 131 (204)
+|++... +.+..+..... ..++++||.....|+ |+.+..+.+++. . ....+||+++.
T Consensus 19 vp~~~~~~s~eea~~aa~~l---G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 19 VPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp CCCEEEESSHHHHHHHHHHH---TSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCCeEEECCHHHHHHHHHHc---CCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 4555555 34444433322 368999998754444 999998765432 1 24678888775
No 77
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=31.22 E-value=66 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=18.2
Q ss_pred CCc-EEEcCCCCCCCC----ceEEeCCCCC
Q psy6987 93 RGP-WIVKPVASSRGR----GIYIVDTPDE 117 (204)
Q Consensus 93 ~~~-wI~KP~~~~rG~----GI~~~~~~~~ 117 (204)
..+ .++||..+..|+ |+.++.+.++
T Consensus 39 G~P~vVvK~~~~~ggrg~~gGV~l~~s~ee 68 (388)
T 2nu8_B 39 GAGPWVVKCQVHAGGRGKAGGVKVVNSKED 68 (388)
T ss_dssp CSSCEEEEECCSSSCTTTTTCEEEECSHHH
T ss_pred CCCeEEEEEecCCCCCCccCCEEEECCHHH
Confidence 456 899998764433 9999987544
No 78
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=30.55 E-value=43 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=16.6
Q ss_pred cEEEcCC--CCCCCCc---------eEEeCCCCC
Q psy6987 95 PWIVKPV--ASSRGRG---------IYIVDTPDE 117 (204)
Q Consensus 95 ~wI~KP~--~~~rG~G---------I~~~~~~~~ 117 (204)
+.++||. .|.||+| +.+.++.++
T Consensus 42 PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e 75 (395)
T 2fp4_B 42 EIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEV 75 (395)
T ss_dssp SEEEEECCSSSCGGGCEETTSCBCSEEEESCHHH
T ss_pred cEEEEEeeccCCCccCccccCCcCCEEEECCHHH
Confidence 6899995 5566655 888877543
No 79
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=28.44 E-value=22 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.685 Sum_probs=8.9
Q ss_pred cCCc--ceeeEEE
Q psy6987 136 VEGH--KCDLRLY 146 (204)
Q Consensus 136 i~gr--KFDiR~y 146 (204)
.+|+ |||||-|
T Consensus 32 WN~~~pKyDIR~W 44 (80)
T 3pm7_A 32 WNGRPPKFDLREW 44 (80)
T ss_dssp GGGCCCEEEEEEE
T ss_pred ECCCCCCcccccc
Confidence 5666 8999987
No 80
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=26.47 E-value=27 Score=23.17 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.9
Q ss_pred cCCc--ceeeEEE
Q psy6987 136 VEGH--KCDLRLY 146 (204)
Q Consensus 136 i~gr--KFDiR~y 146 (204)
.+|+ |||||-|
T Consensus 39 WN~~~pKyDIR~W 51 (79)
T 4g06_A 39 FNGAPAKFDIRAW 51 (79)
T ss_dssp ETTCCCEEEEEEE
T ss_pred eCCCCCCcccccc
Confidence 5666 8999987
No 81
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=25.01 E-value=31 Score=23.05 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=9.1
Q ss_pred cCCc--ceeeEEE
Q psy6987 136 VEGH--KCDLRLY 146 (204)
Q Consensus 136 i~gr--KFDiR~y 146 (204)
.+|+ |||||-|
T Consensus 34 WNg~~pKyDIR~W 46 (82)
T 2l3a_A 34 FNGAPAKFDIRAW 46 (82)
T ss_dssp ESSSCEEEEEEEE
T ss_pred ECCCCCCcccccc
Confidence 5676 8999998
Done!