RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6987
(204 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 187 bits (475), Expect = 2e-58
Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 40/230 (17%)
Query: 8 VTSDVADFNLLWSGLHPKP--QTLRSLAPHQRVNHFPRSYELTRKDRLYKNIEKMQHSKG 65
+ D FNL+ + P + Q VN++ + +L RK L K I+
Sbjct: 33 LKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTE 92
Query: 66 F-----KHFDFIPSTFVMPGDFRELTISHY----------------------RTRGPWIV 98
+ + P+ P + WI
Sbjct: 93 TCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIA 152
Query: 99 KPVASSRGRGIYIVDTPDEV-----PLEESVVVAKYIEKPLLVE--GHKCDLRLYVVVTS 151
K + ++G GI I E+ + V+ KY+E PLL+E K D+R +V+V +
Sbjct: 153 KSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN 212
Query: 152 YDPLIIYMYEEGLVRFATVKYDSGRKHLWNPCMHLCNYSINKHHSDYIKD 201
IY+Y EG++R ++ Y + + HL N+ I K HS
Sbjct: 213 --QYNIYLYREGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHSKNYGR 258
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 40.0 bits (94), Expect = 2e-04
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYI--EKPLLVE 137
P IVK +GIYI +E + + +VE
Sbjct: 146 PVIVKATDLQGSKGIYIAKKEEE--AIDGFNETMNLTKRDYCIVE 188
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 38.1 bits (88), Expect = 9e-04
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 59 KMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEV 118
K + K + +P T + P D +I+KP + G GI D
Sbjct: 111 KWELYKKLRGEVQVPQTSLRPLDC------------KFIIKPRTACAGEGIGFSDEVP-- 156
Query: 119 PLEESVVVAKYIE 131
+ + ++IE
Sbjct: 157 ---DGHIAQEFIE 166
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 38.3 bits (89), Expect = 0.001
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 95 PWIVKPVASSRGRGIYI-VDTPDEVPLEESVVVAKYIEKPLLVEGHKC--DLRLYVV 148
P +VKP +++ G GI I + + E+++ +A + +LVE + + R +V+
Sbjct: 522 PIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIEGTEYRFFVL 578
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 37.5 bits (86), Expect = 0.002
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 13/112 (11%)
Query: 42 PRSYELTR-KDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKP 100
S K ++ + K+ HS G + F + TF F P +VK
Sbjct: 122 LYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF-----FPNHKPMVTAPHFPVVVKL 176
Query: 101 VASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVEGH----KCDLRLYVV 148
+ G G V+ + + + + K K D+R+ +
Sbjct: 177 GHAHAGMGKIKVENQLDF---QDITSVVAMAKTYATTEAFIDSKYDIRIQKI 225
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 37.2 bits (86), Expect = 0.003
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEV----------PLEESVVVAKYIEKPLLVE 137
P I+KP + G+ ++ + +V A E P + E
Sbjct: 176 PLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAE 228
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVP--LEESVVVAKYIEKPLLVEG 138
P K + SS G+G Y V P+++P EE+ A+ + ++VE
Sbjct: 158 PCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEE 203
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 36.4 bits (83), Expect = 0.005
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 20/107 (18%)
Query: 50 KDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGI 109
K ++ + ++ G + F I TF + P +VK + G G
Sbjct: 226 KPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSST-----TYPVVVKMGHAHSGMGK 280
Query: 110 YIVDTPDEVP--------LEESVVVAKYIEKPLLVEGHKCDLRLYVV 148
VD + + +I+ K D+R+ +
Sbjct: 281 VKVDNQHDFQDIASVVALTKTYATAEPFID-------AKYDVRVQKI 320
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 36.1 bits (83), Expect = 0.006
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 94 GPWIVKPVASSRGRGIYIVDT--PDEVPLEESVVVAKYIEKPLLVEGHKC--DLRLYVV 148
++KP +++ G GI I + +++ +A +K ++VE + + R +V+
Sbjct: 526 RAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLVGTEYRFFVL 584
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 33.3 bits (77), Expect = 0.045
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVP--LEESVVVAKYIEKPLLVEG 138
P IVKPV SS G+G + + +++ + + + ++VEG
Sbjct: 150 PCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEG 195
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 32.8 bits (74), Expect = 0.052
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 50 KDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRT--RGPWIVKPVASSRGR 107
K ++ + + + G F + T P +VK + G
Sbjct: 114 KPWVFAQMVAIFKTLG-------GEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGM 166
Query: 108 GIYIVDTPDEVPLEESVVVAKYIEKPLLVEGH----KCDLRLYVV 148
G V+ + + + + + K D+R+ +
Sbjct: 167 GKVKVENHYDF---QDIASVVALTQTYATAEPFIDAKYDIRVQKI 208
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 32.9 bits (75), Expect = 0.057
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 50 KDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGI 109
K +Y+ + G H T+ F E ++ + P VKP S +
Sbjct: 115 KYTMYEYCLRQ----GIAH----ARTYATMASF-EEALAAGEVQLPVFVKPRNGSASIEV 165
Query: 110 YIVDTPDEVPL----EESVVVAKYIEKP 133
V+T +EV ++V + +
Sbjct: 166 RRVETVEEVEQLFSKNTDLIVQELLVGQ 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.065
Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 65/225 (28%)
Query: 1 MVFLNLGVTSDVADFNLLWSGLHPKPQTLRSLAPHQRVNHFPRSY----ELTR--KDRL- 53
+ ++ +T D +LL L +PQ L P + + PR E R
Sbjct: 291 LDHHSMTLTPDEVK-SLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 54 -YKNIEKMQHSKGFKHF-DFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYI 111
+K++ + + + + + P ++R++ + ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLE-----PAEYRKM----FDRLS--------------VFP 382
Query: 112 VDTP----------DEVPLEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDPLIIYM-- 159
+V + +VV + K LVE + + + IY+
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PS---IYLEL 435
Query: 160 -----YEEGLVRFATVKYDSGRKHLWNPCM--HLCNYSIN--KHH 195
E L R Y+ + + + +L Y + HH
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 31.7 bits (73), Expect = 0.12
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 95 PWIVKPVA--SSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVE 137
P +VKP + SS G + IV DE L + + +++E
Sbjct: 135 PLVVKPNSGGSSVG--VKIVYDKDE--LISMLETVFEWDSEVVIE 175
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 31.3 bits (72), Expect = 0.18
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 95 PWIVKPVA--SSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVE 137
P IVKP SS G + V + L++++ +A ++ +L+E
Sbjct: 140 PVIVKPSREGSSVG--MSKVVAENA--LQDALRLAFQHDEEVLIE 180
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 31.4 bits (72), Expect = 0.19
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 95 PWIVKPVA--SSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVE 137
P VKP + SS + V T D L ++ A +K ++VE
Sbjct: 148 PLFVKPASEGSSVA--VLKVKTADA--LPAALSEAATHDKIVIVE 188
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 31.1 bits (71), Expect = 0.24
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 18/55 (32%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVA----------------KYIEKP 133
P ++K GRG+ ++ + + L + V A K +E+
Sbjct: 173 PVMLKASWGGGGRGMRVIRSEAD--LAKEVTEAKREAMAAFGKDEVYLEKLVERA 225
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 31.1 bits (71), Expect = 0.27
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVA----------------KYIEKP 133
P ++K + G+G+ IV E LE++ A +YI+ P
Sbjct: 157 PLMIKATSGGGGKGMRIVREESE--LEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 30.2 bits (69), Expect = 0.40
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVA----------------KYIEKP 133
P I+K GRG+ IV + E ++E+ A K IE P
Sbjct: 159 PIIIKAALGGGGRGMRIVRSKSE--VKEAFERAKSEAKAAFGSDEVYVEKLIENP 211
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 30.1 bits (69), Expect = 0.44
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAK------------YIEK 132
P I+K GRG+ +V E L +S+ + + Y+EK
Sbjct: 155 PVIIKASGGGGGRGMRVVRGDAE--LAQSISMTRAEAKAAFSNDMVYMEK 202
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 29.7 bits (68), Expect = 0.61
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAK------------YIEK 132
P I+K A G+GI + E LE + + Y+EK
Sbjct: 153 PVIIKATAGGGGKGIRVARDEKE--LETGFRMTEQEAQTAFGNGGLYMEK 200
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 29.7 bits (68), Expect = 0.71
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAK------------YIEK 132
P ++K A GRGI I +E L ++ A +EK
Sbjct: 153 PVLLKATAGGGGRGIRICRNEEE--LVKNYEQASREAEKAFGRGDLLLEK 200
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 29.7 bits (68), Expect = 0.71
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAK------------YIEK 132
P I+K A GRG+ +V+ + LE++ A+ Y+EK
Sbjct: 158 PVILKAAAGGGGRGMRVVENEKD--LEKAYWSAESEAMTAFGDGTMYMEK 205
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVA----------------KYIEKPLLVEG 138
P ++K A G+G+ I +E + ++ K+I+ P + G
Sbjct: 47 PVMIKASAGGGGKGMRIAWDDEE--TRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISG 104
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 28.2 bits (63), Expect = 2.0
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 72 IPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPDEVPLEESV--VVAKY 129
P T + D E P ++KPV S GR + V+ +
Sbjct: 103 QPKTALA-TDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGF 161
Query: 130 IEKPLL----VEGHKCDLRLYVV 148
+ VE D+R++VV
Sbjct: 162 QHQLFYIQEYVEKPGRDIRVFVV 184
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.3
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 98 VKPVASS-RGRGIYIVDTPDEVPLEESVVVAKYIE 131
+K + +S + +Y D P ++ + +E
Sbjct: 22 LKKLQASLK---LY---ADDSAP---ALAIKATME 47
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 27.6 bits (62), Expect = 3.4
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVP--LE------------ESVVVAKYIEKP 133
P ++K A G+G+ +V+ E+ L ++V KY+ KP
Sbjct: 180 PVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 27.3 bits (61), Expect = 4.1
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 14/53 (26%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVP--LE------------ESVVVAKYIEKP 133
P ++K A G+G+ I E + + + + K++ +P
Sbjct: 154 PVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 72 IPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVDTPD 116
+ P E+ G I + +R G Y+VD
Sbjct: 10 LAGRPTTPDRVHEVLGRSMLVDGLDI--VLDLTRSGGSYLVDAIT 52
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 27.0 bits (60), Expect = 4.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 51 DRLYKNIEKMQHSKGFKHFDFIPSTFVM 78
+L +E + HSK + D P F++
Sbjct: 112 IQLISRMEYV-HSKNLIYRDVKPENFLI 138
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 27.0 bits (59), Expect = 4.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 94 GPWIVKPVASSRGRGIYIVDTPDEV 118
P IVKP + G+G ++ P++
Sbjct: 127 KPVIVKPHGAKGGKGYFLAKDPEDF 151
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 26.6 bits (59), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 51 DRLYKNIEKMQHSKGFKHFDFIPSTFVM 78
D++ IE + HSK F H D P F+M
Sbjct: 112 DQMISRIEYI-HSKNFIHRDVKPDNFLM 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 6.2
Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 54/136 (39%)
Query: 20 SGLHPKPQTLRSL-----------------APH-QR----VNHF-----P--RSY----- 45
SG P PQ+L L P +R N F P
Sbjct: 380 SG--P-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 46 ELTRKDRLYKNIEKMQHSKGFKHFDF-IP--STFVMPG-DFRELTISHYRTRGPWIV-KP 100
+L KD + N+ F D IP TF G D R L+ S I+ P
Sbjct: 437 DLINKDLVKNNVS-------FNAKDIQIPVYDTF--DGSDLRVLSGSISERIVDCIIRLP 487
Query: 101 V---ASSRGRGIYIVD 113
V +++ + +I+D
Sbjct: 488 VKWETTTQFKATHILD 503
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 26.5 bits (59), Expect = 7.3
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 17/66 (25%)
Query: 126 VAKYIEK-------PLLVEGHKCDLRLYVVVTSY------DPLIIYMYEEGLVRFATV-- 170
V +E+ P EG + +V PL Y+ R +
Sbjct: 91 VMPVVERADALLCYPTPYEGFEYSP--NIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGS 148
Query: 171 KYDSGR 176
Y R
Sbjct: 149 DYIYPR 154
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 26.5 bits (59), Expect = 7.4
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 68 HF-DFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGIYIVD 113
F D P T V + +L + + I+KP+ G I+ V
Sbjct: 130 WFSDLTPETLVT-RNKAQL-KAFWEKHSDIILKPLDGMGGASIFRVK 174
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 26.1 bits (58), Expect = 9.2
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 95 PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAK--------YIEK 132
P ++K G+GI ++ ++ + ++ K
Sbjct: 246 PLMIKASEGGGGKGIRKAESAED--FPILFRQVQSEIPGSPIFLMK 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.444
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,294,457
Number of extensions: 193809
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 46
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.8 bits)