RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6987
         (204 letters)



>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Methanocaldococcus
           jannaschii [TaxId: 2190]}
          Length = 238

 Score = 32.8 bits (74), Expect = 0.016
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 5/72 (6%)

Query: 95  PWIVKPVASSRGRGIYIVDTPDEVP--LEESVVVAKYI---EKPLLVEGHKCDLRLYVVV 149
             IVK   +  GRG +I  + +E     E+                +E +       +  
Sbjct: 29  TVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHY 88

Query: 150 TSYDPLIIYMYE 161
                       
Sbjct: 89  FYSPLKDEVELL 100


>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 235

 Score = 30.3 bits (67), Expect = 0.11
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 7/108 (6%)

Query: 95  PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYIEKPLLVEGHKCDLRLYVVVTSYDP 154
           P IVKP  +  G+G ++   P++            I++   ++  +    +        P
Sbjct: 29  PVIVKPHGAKGGKGYFLAKDPEDF--WRKAEKFLGIKRKEDLKNIQIQEYV-----LGVP 81

Query: 155 LIIYMYEEGLVRFATVKYDSGRKHLWNPCMHLCNYSINKHHSDYIKDM 202
           +  + +   +     +     R       +              I   
Sbjct: 82  VYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYT 129


>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 28.5 bits (62), Expect = 0.44
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 50  KDRLYKNIEKMQHSKGFKHFDFIPSTFVMPGDFRELTISHYRTRGPWIVKPVASSRGRGI 109
           K  ++  +  +  + G + F  I  T+     +            P +VK   +  G G 
Sbjct: 12  KPWVFAQMVAIFKTLGGEKFPLIEQTY-----YPNHREMLTLPTFPVVVKIGHAHSGMGK 66

Query: 110 YIVDTP 115
             V+  
Sbjct: 67  VKVENH 72


>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
           large subunit ATP-binding domains {Escherichia coli
           [TaxId: 562]}
          Length = 275

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 95  PWIVKPVASSRGRGIYIVDTPDEVPLEESVVVAKYI--EKPLLVE 137
           P I++P  +  G G  I    +E   EE       +   K LL++
Sbjct: 38  PCIIRPSFTMGGSGGGIAYNREE--FEEICARGLDLSPTKELLID 80


>d1xkpb1 d.198.1.1 (B:2-122) Chaperone protein SycN {Yersinia pestis
           [TaxId: 632]}
          Length = 121

 Score = 25.1 bits (55), Expect = 4.1
 Identities = 4/30 (13%), Positives = 12/30 (40%)

Query: 83  RELTISHYRTRGPWIVKPVASSRGRGIYIV 112
           + LT++  +  G   ++       + +  V
Sbjct: 64  KALTLTAAQKSGALPLRAGWLGESQLVLFV 93


>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
           synthase, synthetase domain {Escherichia coli [TaxId:
           562]}
          Length = 297

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 93  RGPWIVKPVASSRGRGIYIVDTPDEV 118
           +  + VKP+A   G  I +V   +EV
Sbjct: 209 KTGYAVKPIAGRCGSNIDLVSHHEEV 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,534
Number of extensions: 38192
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 9
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)