BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6995
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 222 MREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLA 281
+ GG D M+ AA P S EL RN + GF V PD +E G
Sbjct: 359 LYAASGGASDYAMQ------AAAPFSYTYELPAYRNSVWFDGFLVDPDF----IEQAGFE 408
Query: 282 YQEGLKQG 289
EG+K G
Sbjct: 409 TWEGIKVG 416
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 262 LGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRLICKV---AVSTLSHDQMVDLLKTSSLV 316
GF V D LV V G A + G+K+G R+I KV V+ SH ++V L+K+ + V
Sbjct: 21 FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRII-KVNGTMVTNSSHLEVVKLIKSGAYV 79
Query: 317 TVTVI 321
+T++
Sbjct: 80 ALTLL 84
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 171 VLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRL 210
+L I+ DSV+ V+E++++++ P +V WA S S L
Sbjct: 147 LLGITKDSVMRVDEKTKEVLQEWPLTTVKRWAASPKSFTL 186
>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|3TB2|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 273 TEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSD 326
TE+ +G +++ LK C+LI S SHD+ ++ +K + IP + D
Sbjct: 49 TELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD 102
>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|B Chain B, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|C Chain C, 1-Cys Peroxidoxin From Plasmodium Yoelli
pdb|1XCC|D Chain D, 1-Cys Peroxidoxin From Plasmodium Yoelli
Length = 220
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 273 TEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSD 326
TE+ +G +++ LK C+LI S SHD+ ++ +K + IP + D
Sbjct: 49 TELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD 102
>pdb|3G4E|A Chain A, Crystal Structure Of Human Senescence Marker
Protein-30(Smp30)(Calcium Bound)
pdb|3G4E|B Chain B, Crystal Structure Of Human Senescence Marker
Protein-30(Smp30)(Calcium Bound)
pdb|3G4H|B Chain B, Crystal Structure Of Human Senescence Marker Protein-30
(Zin
pdb|3G4H|A Chain A, Crystal Structure Of Human Senescence Marker Protein-30
(Zin
Length = 297
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 183 EEQSRDLVFV-APAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGG 227
EE S L+FV PAK V W + T ++ V+ + +R+ GG
Sbjct: 21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG 66
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 266 VQPDGL----VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL-VTV 318
V+ DG+ V V+ GLA ++GLK G + I A L+ + D L SL + V
Sbjct: 38 VEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLV 97
Query: 319 TVIPALSDG 327
P L +G
Sbjct: 98 RTYPELEEG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,460,583
Number of Sequences: 62578
Number of extensions: 358705
Number of successful extensions: 807
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 10
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)