BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6995
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43166|SI1L1_HUMAN Signal-induced proliferation-associated 1-like protein 1 OS=Homo
sapiens GN=SIPA1L1 PE=1 SV=4
Length = 1804
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 6/207 (2%)
Query: 127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
P +SKKKE+ +P + GAI W V ED + C+L IS + +VL+E+++
Sbjct: 833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQET 892
Query: 187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
+ +VF + V+GW ++ SL++++ +GE + G + +E+ E+V RL+ + G
Sbjct: 893 KSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSV----GSFINIEEIKEIVKRLQFVSKG 948
Query: 247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
+ E+TL+RNGLGQLGFHV +G+V +VE G A+Q GL+QG RL ICKVAV+TLSH+
Sbjct: 949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008
Query: 305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
QM+DLL+TS V V +IP D TPRR
Sbjct: 1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQN 76
EH N+ G D+NLGPVA+S++REK + +E+ Y YR++ RTSEL T + G L + +
Sbjct: 500 EHWNYFGADENLGPVAVSIRREKPDEMKENGSPYNYRIIFRTSELMTLR-GSVLEDAIPS 558
Query: 77 TAKRS 81
TAK S
Sbjct: 559 TAKHS 563
>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1 OS=Rattus
norvegicus GN=Sipa1l1 PE=1 SV=1
Length = 1822
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 131/207 (63%), Gaps = 6/207 (2%)
Query: 127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
P +SKKKE+ +P + GAI W V +D C+L IS + +VL+E+++
Sbjct: 872 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISNEFIVLIEQET 931
Query: 187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
+ +VF + V+GW +S +SL++++ +GE + +++ E+V RL+ + G
Sbjct: 932 KSVVFNCSCRDVIGWTSSDSSLKIFYERGECISVESFMSS----EDIKEIVKRLQFVSKG 987
Query: 247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
+ E+TL+RNGLGQLGFHV +G+V +VE G A+Q GLKQG RL ICKVAV+TLSH+
Sbjct: 988 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLKQGSRLVEICKVAVATLSHE 1047
Query: 305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
QM+DLL+TS V V +IP D TPRR
Sbjct: 1048 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1074
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQN 76
EH N+ G D+NLGPVA+S++REK E +E+ Y YR++ RTSEL T + G L + +
Sbjct: 500 EHWNYFGADENLGPVAVSIRREKPEDMKENGSPYNYRIIFRTSELMTLR-GSVLEDAIPS 558
Query: 77 TAKRS 81
TAK S
Sbjct: 559 TAKHS 563
>sp|O60292|SI1L3_HUMAN Signal-induced proliferation-associated 1-like protein 3 OS=Homo
sapiens GN=SIPA1L3 PE=1 SV=3
Length = 1781
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 131/203 (64%), Gaps = 5/203 (2%)
Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
+SKKKE+ + R + GAI W+V +D G + C+L IS + VVL++ +++++V
Sbjct: 849 LTSKKKEKTKARAGAEQHSAGAIAWRVVAQDYAQGVEIDCILGISNEFVVLLDLRTKEVV 908
Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
F V+GW +++L++++ +G+ + EG D + E+V RL+ T G
Sbjct: 909 FNCYCGDVIGWTPDSSTLKIFYGRGDHIFLQATEGSVED---IREIVQRLKVMTSGWETV 965
Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
++TL+RNGLGQLGFHV+ DG V EVE G A+Q GL+QG RL ICKVAV TL+HDQM+D
Sbjct: 966 DMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLTHDQMID 1025
Query: 309 LLKTSSLVTVTVIPALSDGTPRR 331
LL+TS V V +IP DGTPRR
Sbjct: 1026 LLRTSVTVKVVIIPPFEDGTPRR 1048
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKT 63
EH N+ G+D+ LGPVA+S+KREK+E +E Y+YR++ RT EL T
Sbjct: 512 EHANYFGVDEKLGPVAVSIKREKLEDHKEHGPQYQYRIIFRTRELIT 558
>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like protein 1 OS=Mus
musculus GN=Sipa1l1 PE=1 SV=2
Length = 1782
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 131/207 (63%), Gaps = 6/207 (2%)
Query: 127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
P +SKKKE+ +P + GAI W V +D C+L IS++ +VL+E+++
Sbjct: 833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQET 892
Query: 187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
+ + F + V+GW +S SL++++ +GE + G +++ E+V RL+ + G
Sbjct: 893 KSVAFNCSCRDVIGWTSSDTSLKIFYERGECVSVESFISG----EDIKEIVRRLQFVSKG 948
Query: 247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
+ E+TL+RNGLGQLGFHV +G+V +VE G A+Q GL+QG RL ICKVAV+TLSH+
Sbjct: 949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008
Query: 305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
QM+DLL+TS V V +IP D TPRR
Sbjct: 1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQN 76
EH N+ G D+NLGPVA+S++REK E +E+ Y YR++ RTSEL T + G L + +
Sbjct: 500 EHWNYFGADENLGPVAVSIRREKPEDMKENGSPYNYRIIFRTSELMTLR-GSVLEDAIPS 558
Query: 77 TAKRS 81
TAK S
Sbjct: 559 TAKHS 563
>sp|Q80TE4|SI1L2_MOUSE Signal-induced proliferation-associated 1-like protein 2 OS=Mus
musculus GN=Sipa1l2 PE=1 SV=3
Length = 1722
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 5/201 (2%)
Query: 133 SKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFV 192
+KKKER +PR GAI W V D + + C+L IS + ++L+E+ S+++VF
Sbjct: 836 AKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFN 895
Query: 193 APAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQEL 252
+ V+GW + S++ ++ +GE + + D + E+V RL T G E+
Sbjct: 896 CSCRDVIGWTSGLVSIKAFYERGECLLLSSVDNRSED---IREIVQRLLIVTRGCETVEM 952
Query: 253 TLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLL 310
TL+RNGLGQLGFHV +G+V +VE G A++ GL+QG RL ICKVAV+TL+H+QM+DLL
Sbjct: 953 TLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1012
Query: 311 KTSSLVTVTVIPALSDGTPRR 331
+TS V V +I DG+PRR
Sbjct: 1013 RTSVTVKVVIIQPHEDGSPRR 1033
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQ-QMYRYRLLIRTSELKT 63
EHQN+ G+D+NLGPVA+S++REKVE +E + + YR+ RTSEL T
Sbjct: 496 EHQNYFGIDENLGPVAVSIRREKVEDPREKEGSQFNYRVAFRTSELTT 543
>sp|Q5JCS6|SI1L2_RAT Signal-induced proliferation-associated 1-like protein 2 OS=Rattus
norvegicus GN=Sipa1l2 PE=2 SV=1
Length = 1722
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 5/201 (2%)
Query: 133 SKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFV 192
+KKKER +PR GAI W V + + C+L IS + ++L+E++S+++ F
Sbjct: 836 AKKKERVKPRTDAHLFSIGAIMWHVVARYFGQSADIECLLGISNEFIMLIEKESKNVAFN 895
Query: 193 APAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQEL 252
+ V+GW + S+++++ +GE + + D + E+V RL T G E+
Sbjct: 896 CSCRDVIGWTSGLVSIKIFYERGECILLSSVDNSSED---IREIVQRLVIVTRGCETVEM 952
Query: 253 TLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLL 310
TL+RNGLGQLGFHV +G+V +VE G A++ GL+QG RL ICKVAV+TL+H+QM+DLL
Sbjct: 953 TLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1012
Query: 311 KTSSLVTVTVIPALSDGTPRR 331
+TS V V +I DG+PRR
Sbjct: 1013 RTSVTVKVVIIQPHEDGSPRR 1033
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQ-QMYRYRLLIRTSELKT 63
EHQN+ G+D+NLGPVA+S++REKVE +E + + YR+ RTSEL T
Sbjct: 496 EHQNYFGIDENLGPVAVSIRREKVEDPREKEGSQFNYRVAFRTSELTT 543
>sp|Q9P2F8|SI1L2_HUMAN Signal-induced proliferation-associated 1-like protein 2 OS=Homo
sapiens GN=SIPA1L2 PE=1 SV=2
Length = 1722
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 5/183 (2%)
Query: 151 GAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRL 210
GAI W V D + + C+L IS + ++L+E+ S+++VF + V+GW + S+++
Sbjct: 853 GAIMWHVIARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKV 912
Query: 211 YHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDG 270
++ +GE + + D + E+V RL T G E+TL+RNGLGQLGFHV +G
Sbjct: 913 FYERGECVLLSSVDNCAED---IREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEG 969
Query: 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGT 328
+V +VE G A++ GL+QG RL ICKVAV+TL+H+QM+DLL+TS V V +I DG+
Sbjct: 970 IVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGS 1029
Query: 329 PRR 331
PRR
Sbjct: 1030 PRR 1032
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQ-QMYRYRLLIRTSELKT 63
EHQN+ G+D+NLGPVA+S++REKVE +E + + YR+ RTSEL T
Sbjct: 495 EHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTT 542
>sp|P46062|SIPA1_MOUSE Signal-induced proliferation-associated protein 1 OS=Mus musculus
GN=Sipa1 PE=2 SV=2
Length = 1037
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 170 CVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD 229
C+L IS +++VLV + +VF + VL W S + L LYH +GE + + G
Sbjct: 604 CLLGISAETLVLVAPRDGRVVFNCACRDVLAWTFSEHQLDLYHGRGEAITLRL---DGAP 660
Query: 230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQG 289
+ EVV RL+ + G +EL L R+G G+LGF V +G +T VE A GL+ G
Sbjct: 661 GQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDAEGFITHVERFTFAETTGLRPG 720
Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRR-YADLKM 337
RL +C + L + +L+++ V VTV+P G PRR +++L M
Sbjct: 721 ARLLRVCGQTLPKLGPETAAQMLRSAPKVCVTVLPPDESGRPRRSFSELYM 771
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKT 63
EHQN+ G+D+ LGPVA+SL+RE+ E + ++ YR+++RT++L+T
Sbjct: 223 EHQNFFGLDEALGPVAVSLRREEKEGSG-GGTLHSYRVIVRTTQLRT 268
>sp|Q96FS4|SIPA1_HUMAN Signal-induced proliferation-associated protein 1 OS=Homo sapiens
GN=SIPA1 PE=1 SV=1
Length = 1042
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 170 CVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD 229
C+L IS +++VLV + +VF + VL W S L LYH +GE + G
Sbjct: 609 CLLGISAEALVLVAPRDGRVVFNCACRDVLAWTFSEQQLDLYHGRGEAITLRF---DGSP 665
Query: 230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQG 289
+ EVV RL+ + G +EL L R+G G+LGF V +G VT VE A GL+ G
Sbjct: 666 GQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDAEGFVTHVERFTFAETAGLRPG 725
Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRR 331
RL +C + +L + LL+++ V VTV+P G PRR
Sbjct: 726 ARLLRVCGQTLPSLRPEAAAQLLRSAPKVCVTVLPPDESGRPRR 769
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKT 63
EHQN+ GMD++LGPVA+SL+RE+ E + ++ YR+++RT++L+T
Sbjct: 227 EHQNFFGMDESLGPVAVSLRREEKEGSG-GGTLHSYRVIVRTTQLRT 272
>sp|Q9H5P4|PDZD7_HUMAN PDZ domain-containing protein 7 OS=Homo sapiens GN=PDZD7 PE=1 SV=1
Length = 517
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 262 LGFHVQPD---GL---VTEVEHMGLAYQEGLKQGCRLICK--VAVSTLSHDQMVDLLKTS 313
LGF+++ GL V++V+H GLA + G+K G +++ V +SH Q V++LK
Sbjct: 222 LGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQ 281
Query: 314 SLVTVTV 320
+ + +T+
Sbjct: 282 THIMLTI 288
>sp|Q5RBI7|PDZD7_PONAB PDZ domain-containing protein 7 OS=Pongo abelii GN=PDZD7 PE=2 SV=1
Length = 528
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 262 LGFHVQPD---GL---VTEVEHMGLAYQEGLKQGCRLICK--VAVSTLSHDQMVDLLKTS 313
LGF+++ GL V++V+H GLA + G+K G +++ V +SH Q V++LK
Sbjct: 222 LGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQ 281
Query: 314 SLVTVTV 320
+ + +T+
Sbjct: 282 THIMLTI 288
>sp|A1C603|RIFK_ASPCL Riboflavin kinase OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=fmn1 PE=3 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAY---------QEGLKQGCRLICKVA 297
SP E+T + G GQ+ FH PD T+++ + L Y E L + R+ C+VA
Sbjct: 123 SPTAEVTTQGQGHGQVKFHKLPDFYGTQLKLLILGYIRPEFDYVSLEALVEDIRVDCEVA 182
Query: 298 VSTL 301
++L
Sbjct: 183 RASL 186
>sp|B2G8Y5|RPOC_LACRJ DNA-directed RNA polymerase subunit beta' OS=Lactobacillus reuteri
(strain JCM 1112) GN=rpoC PE=3 SV=1
Length = 1211
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 158 SLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEV 217
S+ D KTG I +V++ EE ++ +V K + A + N+ G
Sbjct: 851 SVFDPKTGE------KIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNT-----EHGVC 899
Query: 218 TRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLK 255
R + R GDR E E V + A + G P +LTL+
Sbjct: 900 ERCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLR 937
>sp|A5VLL3|RPOC_LACRD DNA-directed RNA polymerase subunit beta' OS=Lactobacillus reuteri
(strain DSM 20016) GN=rpoC PE=3 SV=1
Length = 1211
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 158 SLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEV 217
S+ D KTG I +V++ EE ++ +V K + A + N+ G
Sbjct: 851 SVFDPKTGE------KIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNT-----EHGVC 899
Query: 218 TRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLK 255
R + R GDR E E V + A + G P +LTL+
Sbjct: 900 ERCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLR 937
>sp|B4JTT7|HTRA2_DROGR Serine protease HTRA2, mitochondrial OS=Drosophila grimshawi
GN=HtrA2 PE=3 SV=1
Length = 426
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 96 RSSNSSGYGTGSSSRSFMGVDNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICW 155
R S Y TG + +MG+ L ++P LF K R + +P+TL G + W
Sbjct: 312 RRKKGSAYKTGYPVKRYMGI-----TMLTLTPDILFELKS----RTQNMPETLSHGVLVW 362
Query: 156 QV 157
+V
Sbjct: 363 KV 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,117,101
Number of Sequences: 539616
Number of extensions: 5335224
Number of successful extensions: 14274
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 14223
Number of HSP's gapped (non-prelim): 44
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)