Query psy6995
Match_columns 342
No_of_seqs 124 out of 142
Neff 3.4
Searched_HMMs 46136
Date Sat Aug 17 00:06:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3686|consensus 100.0 1.8E-37 3.9E-42 321.9 9.4 196 127-339 484-683 (740)
2 KOG3605|consensus 99.5 1.7E-15 3.6E-20 157.2 3.4 77 246-323 733-814 (829)
3 PF00595 PDZ: PDZ domain (Also 99.3 1.3E-11 2.8E-16 94.1 7.8 70 251-320 1-80 (81)
4 smart00228 PDZ Domain present 99.0 4.5E-09 9.8E-14 78.3 9.4 74 249-323 2-84 (85)
5 cd00992 PDZ_signaling PDZ doma 99.0 4.2E-09 9.1E-14 78.8 9.1 72 249-320 1-81 (82)
6 cd00136 PDZ PDZ domain, also c 98.8 1.2E-08 2.6E-13 74.9 7.5 60 261-320 2-69 (70)
7 KOG3209|consensus 98.5 1.7E-07 3.8E-12 99.4 7.0 83 249-331 754-845 (984)
8 cd00988 PDZ_CTP_protease PDZ d 98.4 6.4E-07 1.4E-11 68.0 6.6 64 260-323 2-72 (85)
9 KOG3686|consensus 98.4 1.8E-07 4E-12 99.4 4.1 47 13-67 163-209 (740)
10 KOG3550|consensus 98.1 5.4E-06 1.2E-10 75.4 6.5 76 244-320 85-171 (207)
11 PF13180 PDZ_2: PDZ domain; PD 98.1 1.1E-05 2.4E-10 62.1 6.5 60 261-322 2-71 (82)
12 cd00990 PDZ_glycyl_aminopeptid 97.9 3.2E-05 7E-10 58.2 5.9 59 262-322 3-66 (80)
13 COG0793 Prc Periplasmic protea 97.9 2.8E-05 6E-10 77.8 6.8 92 232-323 67-171 (406)
14 KOG3553|consensus 97.8 4.1E-06 8.9E-11 71.7 -0.1 51 270-320 60-113 (124)
15 PRK11186 carboxy-terminal prot 97.7 4.2E-05 9.2E-10 81.1 6.2 98 233-330 213-327 (667)
16 cd00989 PDZ_metalloprotease PD 97.7 0.00014 2.9E-09 54.4 6.7 59 262-322 3-68 (79)
17 KOG3549|consensus 97.6 0.00014 3.1E-09 73.1 7.7 85 236-320 37-136 (505)
18 TIGR00225 prc C-terminal pepti 97.5 0.00015 3.3E-09 69.5 6.2 92 232-323 18-121 (334)
19 TIGR02037 degP_htrA_DO peripla 97.5 0.00053 1.2E-08 67.8 9.0 52 269-322 362-419 (428)
20 PLN00049 carboxyl-terminal pro 97.4 0.00029 6.3E-09 69.6 7.0 92 231-322 51-160 (389)
21 cd00991 PDZ_archaeal_metallopr 97.4 0.0004 8.6E-09 53.5 6.0 50 271-322 13-67 (79)
22 KOG0606|consensus 97.4 0.00027 5.9E-09 78.5 6.0 71 251-322 629-715 (1205)
23 PRK10779 zinc metallopeptidase 97.3 0.0015 3.3E-08 65.5 9.9 40 271-312 224-265 (449)
24 cd00987 PDZ_serine_protease PD 97.1 0.0008 1.7E-08 51.1 4.7 50 271-322 27-81 (90)
25 KOG3552|consensus 97.1 0.00053 1.1E-08 75.4 4.8 81 248-329 55-138 (1298)
26 PRK10139 serine endoprotease; 97.1 0.0032 6.8E-08 63.9 10.0 50 271-322 393-445 (455)
27 TIGR00054 RIP metalloprotease 97.0 0.0042 9.2E-08 62.1 9.5 78 230-312 160-247 (420)
28 TIGR02037 degP_htrA_DO peripla 97.0 0.0011 2.4E-08 65.6 5.3 88 230-320 215-312 (428)
29 cd00986 PDZ_LON_protease PDZ d 96.9 0.003 6.5E-08 48.0 6.4 52 268-322 7-64 (79)
30 KOG3542|consensus 96.9 0.0014 3E-08 70.7 5.7 81 240-320 523-616 (1283)
31 PRK10942 serine endoprotease; 96.7 0.01 2.2E-07 60.6 10.0 50 271-322 411-463 (473)
32 PRK10942 serine endoprotease; 96.4 0.0044 9.4E-08 63.2 5.2 87 231-320 270-366 (473)
33 KOG3209|consensus 96.4 0.008 1.7E-07 65.1 7.1 82 250-332 649-748 (984)
34 PRK10139 serine endoprotease; 96.3 0.0079 1.7E-07 61.0 6.6 79 231-312 249-334 (455)
35 PRK10779 zinc metallopeptidase 96.3 0.0043 9.2E-08 62.4 4.3 52 269-322 127-183 (449)
36 PF04495 GRASP55_65: GRASP55/6 96.1 0.016 3.5E-07 50.7 6.2 66 245-312 7-88 (138)
37 PRK10898 serine endoprotease; 96.0 0.0088 1.9E-07 58.6 4.9 52 269-322 279-336 (353)
38 KOG1892|consensus 96.0 0.025 5.4E-07 63.2 8.4 111 195-320 893-1016(1629)
39 TIGR01713 typeII_sec_gspC gene 95.8 0.013 2.7E-07 55.8 4.7 51 270-322 192-248 (259)
40 KOG0609|consensus 95.6 0.034 7.4E-07 58.4 7.6 72 254-325 128-207 (542)
41 COG3975 Predicted protease wit 95.6 0.016 3.5E-07 60.8 5.2 49 248-296 437-492 (558)
42 TIGR02038 protease_degS peripl 95.6 0.014 3.1E-07 57.0 4.3 52 269-322 278-335 (351)
43 TIGR03279 cyano_FeS_chp putati 95.4 0.013 2.7E-07 60.2 3.5 48 271-321 1-50 (433)
44 TIGR00054 RIP metalloprotease 94.8 0.032 6.9E-07 55.9 4.2 40 270-311 130-171 (420)
45 KOG3580|consensus 94.8 0.051 1.1E-06 58.5 5.9 67 249-316 9-89 (1027)
46 KOG3606|consensus 94.5 0.066 1.4E-06 53.0 5.5 85 231-326 153-256 (358)
47 COG0265 DegQ Trypsin-like seri 93.6 0.45 9.7E-06 45.8 9.3 89 231-323 231-328 (347)
48 TIGR02860 spore_IV_B stage IV 92.6 0.25 5.3E-06 50.5 6.0 59 260-320 96-167 (402)
49 KOG3605|consensus 91.9 0.27 5.8E-06 53.4 5.5 84 240-323 637-734 (829)
50 KOG3834|consensus 91.4 0.58 1.3E-05 48.6 7.2 83 244-326 73-170 (462)
51 KOG3551|consensus 90.3 0.33 7.2E-06 50.1 4.3 66 250-315 86-160 (506)
52 KOG3571|consensus 88.6 1.5 3.2E-05 46.7 7.5 80 248-327 249-346 (626)
53 PF00640 PID: Phosphotyrosine 86.0 1.7 3.7E-05 35.7 5.1 43 167-209 51-94 (140)
54 PF02174 IRS: PTB domain (IRS- 84.6 14 0.00031 30.3 9.8 79 154-239 4-93 (100)
55 KOG3129|consensus 84.3 1.9 4.2E-05 41.4 5.2 64 271-334 142-221 (231)
56 KOG3580|consensus 83.8 1.1 2.4E-05 48.8 3.8 44 271-314 432-477 (1027)
57 PF12812 PDZ_1: PDZ-like domai 83.5 0.79 1.7E-05 36.6 2.0 49 260-312 24-74 (78)
58 KOG3938|consensus 81.6 2.9 6.3E-05 41.6 5.5 75 249-324 127-211 (334)
59 PRK09681 putative type II secr 80.7 1.8 3.8E-05 42.4 3.7 42 281-322 220-264 (276)
60 KOG3532|consensus 79.4 4.4 9.6E-05 44.9 6.4 67 254-322 379-453 (1051)
61 KOG3651|consensus 76.6 7.5 0.00016 39.6 6.7 70 251-320 7-86 (429)
62 cd01268 Numb Numb Phosphotyros 75.1 5.9 0.00013 35.2 5.0 44 168-211 50-93 (138)
63 smart00462 PTB Phosphotyrosine 75.0 6.8 0.00015 32.1 5.0 44 168-211 44-87 (134)
64 smart00310 PTBI Phosphotyrosin 68.5 16 0.00034 30.9 5.8 61 154-216 3-66 (98)
65 cd01216 Fe65 Fe65 Phosphotyros 64.7 15 0.00032 31.6 5.1 43 168-211 40-82 (123)
66 cd00934 PTB Phosphotyrosine-bi 62.9 19 0.0004 28.8 5.1 39 168-206 42-80 (123)
67 KOG1320|consensus 59.7 14 0.0003 38.9 4.8 39 271-311 401-441 (473)
68 KOG4407|consensus 59.2 5.5 0.00012 46.8 1.9 56 270-325 145-203 (1973)
69 PF14430 Imm1: Immunity protei 58.3 26 0.00057 29.6 5.5 71 208-284 1-74 (127)
70 PF14685 Tricorn_PDZ: Tricorn 57.5 42 0.00091 27.6 6.3 45 279-325 31-81 (88)
71 cd01267 CED6_AIDA1b Phosphotyr 55.3 30 0.00066 29.3 5.4 44 168-211 45-88 (132)
72 KOG3834|consensus 50.4 24 0.00053 37.1 4.7 61 255-322 8-72 (462)
73 COG0750 Predicted membrane-ass 49.8 35 0.00076 32.9 5.5 55 268-322 129-188 (375)
74 COG2152 Predicted glycosylase 42.0 39 0.00084 34.1 4.5 41 187-238 269-310 (314)
75 COG3031 PulC Type II secretory 40.6 71 0.0015 31.7 5.9 64 250-322 195-264 (275)
76 cd01215 Dab Disabled (Dab) Pho 39.1 53 0.0012 29.5 4.5 43 169-211 54-96 (139)
77 cd00900 PH-like Pleckstrin hom 38.1 1.5E+02 0.0032 21.1 7.1 68 169-241 21-97 (99)
78 PF08753 NikR_C: NikR C termin 36.2 57 0.0012 25.8 3.9 44 207-254 33-76 (78)
79 smart00112 CA Cadherin repeats 36.1 34 0.00074 25.4 2.5 53 2-61 2-56 (79)
80 cd01273 CED-6 CED-6 Phosphotyr 35.9 92 0.002 27.1 5.5 30 168-197 55-84 (142)
81 PF01887 SAM_adeno_trans: S-ad 34.2 2.8E+02 0.0061 26.8 8.9 33 260-292 223-256 (258)
82 cd01274 AIDA-1b AIDA-1b Phosph 31.3 1.3E+02 0.0028 26.1 5.6 43 168-211 41-84 (127)
83 cd00824 PTBI IRS-like phosphot 30.9 2.1E+02 0.0046 24.3 6.7 61 154-216 3-67 (104)
84 COG2375 ViuB Siderophore-inter 30.1 85 0.0018 30.9 4.7 101 187-299 33-136 (265)
85 PF08000 bPH_1: Bacterial PH d 25.3 4E+02 0.0086 23.3 7.5 64 172-240 44-119 (124)
86 PF10706 Aminoglyc_resit: Amin 25.2 98 0.0021 29.0 3.9 67 231-306 52-128 (174)
87 PF04041 DUF377: Domain of unk 24.8 98 0.0021 30.3 4.1 31 188-224 270-302 (312)
88 PF11874 DUF3394: Domain of un 23.8 76 0.0017 29.7 3.0 32 261-292 112-146 (183)
89 COG1912 Uncharacterized conser 22.7 2.4E+02 0.0052 28.1 6.2 21 274-294 245-266 (268)
90 PRK00969 hypothetical protein; 22.4 6.1E+02 0.013 27.5 9.5 90 116-224 227-316 (508)
91 PF03413 PepSY: Peptidase prop 21.8 2.4E+02 0.0052 19.8 4.7 32 150-191 29-62 (64)
92 PRK03760 hypothetical protein; 21.0 68 0.0015 27.5 2.0 23 271-294 92-115 (117)
93 PF14563 DUF4444: Domain of un 20.9 35 0.00077 25.3 0.2 11 20-30 13-23 (42)
94 PRK01002 nickel responsive reg 20.6 2.6E+02 0.0057 24.6 5.6 47 208-258 90-136 (141)
95 KOG1738|consensus 20.0 1.4E+02 0.003 33.0 4.4 61 260-320 213-281 (638)
No 1
>KOG3686|consensus
Probab=100.00 E-value=1.8e-37 Score=321.88 Aligned_cols=196 Identities=22% Similarity=0.246 Sum_probs=189.5
Q ss_pred CeeeeccCcccccCCCCCCccccceeeEEEEEeccCC--CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeeccc
Q psy6995 127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSK--TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATS 204 (342)
Q Consensus 127 p~~sl~~KkKEr~kpr~~~e~~s~GAl~W~V~v~D~s--~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s 204 (342)
++|++++++|++.|++++++.++. |++|.|.++|+. .+++++|++|||++++|++++.++.|+|||+|+||||||..
T Consensus 484 s~~~~~~~~p~~~~~~~~a~~~~~-a~~~~vk~~~~~~~~s~~~~c~~g~~~~~~v~~s~~~~~v~fn~~~~~ii~~tt~ 562 (740)
T KOG3686|consen 484 SMISLGSRQPQPLKTSSAAHDHLP-AFTWNVKLLEWRSLVSQEHACFPGISPHLDVLSSREVHKVAFNEDRADILSWTTA 562 (740)
T ss_pred hhhhhcCCCCCcCCCCCcccccch-hhhhhhhhhhhccccccccccccCcCccceeeecccccceEEecccccccccccc
Confidence 568899999999999999999888 999999999999 89999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhh
Q psy6995 205 TNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQE 284 (342)
Q Consensus 205 ~~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~A 284 (342)
+.+|++||.|||++..++... |+.+|+|||+++++++|++.+++||||+.||+|++||++++||.|
T Consensus 563 ~~sl~~~~~~~~~~~~~~~~~--------------l~~~t~G~e~~~~~~~r~~~~~~~fhv~~e~~~~~~e~~~~~~~a 628 (740)
T KOG3686|consen 563 SASLQFDSFRSELGWEVKVGR--------------LDGYTGGLEVETRALYRADAEAVGFHVSTEGNGDVQEKWKHAGNA 628 (740)
T ss_pred cccceeeeccccceeeeeecc--------------chhhccCceeeeeeecccccccccceecccccceeeccccccccc
Confidence 999999999999999987662 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeCCCCCCCCCcCCCccccc
Q psy6995 285 GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWR 339 (342)
Q Consensus 285 GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~VipP~~dg~PRRgc~~~~~~ 339 (342)
|| |.|+ +|+++++|++|+++.+||+++..|.+.++||+++++||++|.+.++-
T Consensus 629 ~l--g~~~~~~~~~~~~Tla~~~~~~l~~~s~~v~~~~~~~~d~~~~r~~~~e~~~l 683 (740)
T KOG3686|consen 629 EL--GSRENTRKKYTRETLATKFCDVLLVLSQVVDKMVRPPVDTASPREFCPEFDGL 683 (740)
T ss_pred cc--cceeeeehhhhhhhhhhhhhhhhhhhhhccceeecCcccccchhhcccccCcc
Confidence 99 9999 99999999999999999999999999999999999999999999873
No 2
>KOG3605|consensus
Probab=99.55 E-value=1.7e-15 Score=157.24 Aligned_cols=77 Identities=30% Similarity=0.562 Sum_probs=69.9
Q ss_pred CC-CceEEEeecCCC-CCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995 246 GS-PAQELTLKRNGL-GQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320 (342)
Q Consensus 246 Gc-et~El~LrR~~~-gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V 320 (342)
-| +.+|+.|+|+.. +||||+|| +|+||++.|+|+||++|+|+|||| |||++|++.+|+.||.||.+++ .++...
T Consensus 733 ~cpPV~~V~I~RPd~kyQLGFSVQ-NGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT 811 (829)
T KOG3605|consen 733 SCPPVTTVLIRRPDLRYQLGFSVQ-NGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT 811 (829)
T ss_pred cCCCceEEEeecccchhhccceee-CcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence 57 457888999977 99999998 999999999999999999999999 9999999999999999999887 677777
Q ss_pred eCC
Q psy6995 321 IPA 323 (342)
Q Consensus 321 ipP 323 (342)
+|.
T Consensus 812 MPa 814 (829)
T KOG3605|consen 812 MPA 814 (829)
T ss_pred chH
Confidence 664
No 3
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.28 E-value=1.3e-11 Score=94.10 Aligned_cols=70 Identities=41% Similarity=0.574 Sum_probs=62.5
Q ss_pred EEEeecCCCCCCCeEEcC-------CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995 251 ELTLKRNGLGQLGFHVQP-------DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320 (342)
Q Consensus 251 El~LrR~~~gqLGFhV~~-------EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V 320 (342)
+++|.|+..+.|||.+.. .-+|++|.++|+|+++||++||+| |||+++.+++|++++++|+.+. .|+|+|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence 477889877999999964 239999999999999999999999 9999999999999999999766 677765
No 4
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.98 E-value=4.5e-09 Score=78.25 Aligned_cols=74 Identities=35% Similarity=0.502 Sum_probs=64.4
Q ss_pred ceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995 249 AQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT 319 (342)
Q Consensus 249 t~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~ 319 (342)
..++.+.++. +.|||.++. .| +|+.|.++++|+++|||+||+| |||+++.++++.+++.+++... .+.|.
T Consensus 2 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 2 PRLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred cEEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 4567788888 999999986 35 8999999999999999999999 9999999999999999998654 67777
Q ss_pred EeCC
Q psy6995 320 VIPA 323 (342)
Q Consensus 320 VipP 323 (342)
+..+
T Consensus 81 i~r~ 84 (85)
T smart00228 81 VLRG 84 (85)
T ss_pred EEeC
Confidence 7654
No 5
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.97 E-value=4.2e-09 Score=78.83 Aligned_cols=72 Identities=39% Similarity=0.567 Sum_probs=63.2
Q ss_pred ceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995 249 AQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT 319 (342)
Q Consensus 249 t~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~ 319 (342)
++++.+.|+..+.|||.+++. -+|++|.++++|+++||++||+| |||+++.+++++++.++|+... .+.++
T Consensus 1 ~~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 1 VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred CEEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 357889998889999999865 37999999999999999999999 9999999999999999999755 55555
Q ss_pred E
Q psy6995 320 V 320 (342)
Q Consensus 320 V 320 (342)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 4
No 6
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.85 E-value=1.2e-08 Score=74.86 Aligned_cols=60 Identities=33% Similarity=0.483 Sum_probs=53.6
Q ss_pred CCCeEEcCC---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995 261 QLGFHVQPD---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV 320 (342)
Q Consensus 261 qLGFhV~~E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V 320 (342)
.+||.+... | +|+.|.++++|+.||||+||+| |||+++...+|+++.++|+.. ..|+|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 689999765 3 8999999999999999999999 999999999999999999976 3677765
No 7
>KOG3209|consensus
Probab=98.51 E-value=1.7e-07 Score=99.44 Aligned_cols=83 Identities=29% Similarity=0.462 Sum_probs=73.4
Q ss_pred ceEEEeecCCCCCCCeEEc-----CCceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995 249 AQELTLKRNGLGQLGFHVQ-----PDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT 319 (342)
Q Consensus 249 t~El~LrR~~~gqLGFhV~-----~EG~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~ 319 (342)
+-.+.|.|+--.+.||-+- .+--|-.+.++++|.++| |++|||| |||+++..|+|.++|.||+.+. .|+|+
T Consensus 754 ~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt 833 (984)
T KOG3209|consen 754 PYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT 833 (984)
T ss_pred CeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence 7789999998899999882 222378899999999987 9999999 9999999999999999999777 89999
Q ss_pred EeCCCCCCCCCc
Q psy6995 320 VIPALSDGTPRR 331 (342)
Q Consensus 320 VipP~~dg~PRR 331 (342)
+|||+|.+.|-.
T Consensus 834 Iip~ee~~~~~~ 845 (984)
T KOG3209|consen 834 IIPPEEAGPPTS 845 (984)
T ss_pred EcChhccCCCCC
Confidence 999999997753
No 8
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.43 E-value=6.4e-07 Score=68.00 Aligned_cols=64 Identities=30% Similarity=0.411 Sum_probs=54.4
Q ss_pred CCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeCC
Q psy6995 260 GQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIPA 323 (342)
Q Consensus 260 gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~VipP 323 (342)
+.|||.+..+ | +|..|.++++|+++||++||+| |||+.+...+|+++.++|+.. ..+.+++..+
T Consensus 2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4678888643 2 8889999999999999999999 999999999999999999743 3678888765
No 9
>KOG3686|consensus
Probab=98.40 E-value=1.8e-07 Score=99.37 Aligned_cols=47 Identities=36% Similarity=0.516 Sum_probs=37.7
Q ss_pred cCCccccccccccCCCCceEEEEEEeeecccccccceeeEEEEEEecccccccee
Q psy6995 13 NIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIG 67 (342)
Q Consensus 13 ~~~keHqN~fG~DE~LGPvavSi~rE~~e~~~~~~~~y~YRiiiRtsel~T~~i~ 67 (342)
-.+|||+||||+||+||||++|++||+.. .. .+ ||||+|| |+++...
T Consensus 163 f~~keh~n~~g~d~~lgpi~lS~~~e~~~--s~---~h-~Rii~rt--lr~~~q~ 209 (740)
T KOG3686|consen 163 FTGKEHPNYLGADELLGPIRLSQSREVPA--SC---AH-YRIIART--LRKMTQE 209 (740)
T ss_pred HhcccCccccCCCchhceeEEEEeeeccc--cC---cc-eEEEEec--ccccccc
Confidence 45799999999999999999999999332 11 47 9999999 6665533
No 10
>KOG3550|consensus
Probab=98.12 E-value=5.4e-06 Score=75.42 Aligned_cols=76 Identities=29% Similarity=0.440 Sum_probs=60.5
Q ss_pred CCCC-CceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995 244 TPGS-PAQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS 313 (342)
Q Consensus 244 T~Gc-et~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts 313 (342)
+-|. -++-+.|.... .+|||.|-+- =+|..+.|+|.|++ +||+.||.| |||++|....||+.|+||+.+
T Consensus 85 seghahprvvelpktd-eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa 163 (207)
T KOG3550|consen 85 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA 163 (207)
T ss_pred hccCCCCceeecCccc-cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence 3444 34555555443 6899999422 28999999999987 789999999 999999999999999999976
Q ss_pred C-cEEEEE
Q psy6995 314 S-LVTVTV 320 (342)
Q Consensus 314 ~-~V~v~V 320 (342)
. .|+++|
T Consensus 164 ~gsvklvv 171 (207)
T KOG3550|consen 164 VGSVKLVV 171 (207)
T ss_pred cCcEEEEE
Confidence 5 788776
No 11
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.07 E-value=1.1e-05 Score=62.10 Aligned_cols=60 Identities=33% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995 261 QLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP 322 (342)
Q Consensus 261 qLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip 322 (342)
.||..++.. | .|.+|.++++|++|||++||+| |||+.| .+-+++...|. ...+|+|++..
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 466666432 4 7899999999999999999999 999999 45578888884 23368888876
No 12
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.89 E-value=3.2e-05 Score=58.18 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCeEEcCC-c--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995 262 LGFHVQPD-G--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP 322 (342)
Q Consensus 262 LGFhV~~E-G--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip 322 (342)
+|+.+..+ + .|..|.++++|++|||++||.| |||+.+.+ -.+++..++....+.+++.+
T Consensus 3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~~~~~~v~l~v~r 66 (80)
T cd00990 3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEYQAGDPVELTVFR 66 (80)
T ss_pred ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhcCCCCEEEEEEEE
Confidence 57777533 2 8999999999999999999999 99999876 33333333333467776654
No 13
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=2.8e-05 Score=77.78 Aligned_cols=92 Identities=25% Similarity=0.312 Sum_probs=71.9
Q ss_pred hHHHHHHhh-hccCCCCCceEEEeec---CCC-CCCCeEEcC-C-c--eEEEEcccchhhhhCCCCCCEE--eecccccC
Q psy6995 232 ELMEVVVRL-RAATPGSPAQELTLKR---NGL-GQLGFHVQP-D-G--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVST 300 (342)
Q Consensus 232 dl~EIV~RL-~~VT~Gcet~El~LrR---~~~-gqLGFhV~~-E-G--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ 300 (342)
.+..++..| ..+|.=+...+..--+ ++. +++|-+++. + + .|.++.++++|++||||+||+| |||.++..
T Consensus 67 ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~ 146 (406)
T COG0793 67 AIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGG 146 (406)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccC
Confidence 344567777 6676666433333222 222 788889876 3 3 8999999999999999999999 99999999
Q ss_pred CCHHHHHHHHhccC--cEEEEEeCC
Q psy6995 301 LSHDQMVDLLKTSS--LVTVTVIPA 323 (342)
Q Consensus 301 lsHeq~vdlLrts~--~V~v~VipP 323 (342)
++.++++++||-.. +|+|++.++
T Consensus 147 ~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 147 VSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 99999999999444 899999998
No 14
>KOG3553|consensus
Probab=97.81 E-value=4.1e-06 Score=71.67 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=46.1
Q ss_pred c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEE
Q psy6995 270 G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTV 320 (342)
Q Consensus 270 G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~V 320 (342)
| +||.|+.+++|+.||||.+|.| +||-....++|+|.+..|+...-++++|
T Consensus 60 GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLV 113 (124)
T KOG3553|consen 60 GIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLV 113 (124)
T ss_pred cEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHH
Confidence 5 8999999999999999999999 9999999999999999998766555544
No 15
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.75 E-value=4.2e-05 Score=81.15 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=69.8
Q ss_pred HHHHHHhhhccCCCCCceEEE-eec--C-CCCCCCeEEcCC-c--eEEEEcccchhhhh-CCCCCCEE--ee--c---cc
Q psy6995 233 LMEVVVRLRAATPGSPAQELT-LKR--N-GLGQLGFHVQPD-G--LVTEVEHMGLAYQE-GLKQGCRL--IC--K---VA 297 (342)
Q Consensus 233 l~EIV~RL~~VT~Gcet~El~-LrR--~-~~gqLGFhV~~E-G--~Vt~VE~~g~Ae~A-GLR~G~RL--Ic--g---~s 297 (342)
++.++..|...|+=..+.+.. +.. + ...++|..++.+ | +|++|.++|+|++| ||++||+| || | ++
T Consensus 213 i~~m~~~lDphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~d 292 (667)
T PRK11186 213 MNAFAREIDPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVD 292 (667)
T ss_pred HHHHHhCCCCCccccChHHHHHhhhccCCceeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccc
Confidence 455666667666644444432 222 2 236778877543 2 89999999999998 99999999 98 4 46
Q ss_pred ccCCCHHHHHHHHh--ccCcEEEEEeCCCCCCCCC
Q psy6995 298 VSTLSHDQMVDLLK--TSSLVTVTVIPALSDGTPR 330 (342)
Q Consensus 298 V~~lsHeq~vdlLr--ts~~V~v~VipP~~dg~PR 330 (342)
|..++.++++++|+ ...+|+|+|.++..+|.++
T Consensus 293 v~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~ 327 (667)
T PRK11186 293 VIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTR 327 (667)
T ss_pred cccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceE
Confidence 77888999999998 3347999998865556543
No 16
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.71 E-value=0.00014 Score=54.37 Aligned_cols=59 Identities=31% Similarity=0.368 Sum_probs=46.7
Q ss_pred CCeEEcCC---ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeC
Q psy6995 262 LGFHVQPD---GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIP 322 (342)
Q Consensus 262 LGFhV~~E---G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~Vip 322 (342)
|||..-.- =+|..|.++++|+++|||+||.| |||+++. +.+++..+|+.. ..+.+++.+
T Consensus 3 ~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 3 LGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred eeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEE
Confidence 55555322 27899999999999999999999 9999887 568888888764 467777765
No 17
>KOG3549|consensus
Probab=97.63 E-value=0.00014 Score=73.14 Aligned_cols=85 Identities=20% Similarity=0.374 Sum_probs=72.1
Q ss_pred HHHhhhccCCCCC-----ceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhCC-CCCCEE--eecccccCC
Q psy6995 236 VVVRLRAATPGSP-----AQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEGL-KQGCRL--ICKVAVSTL 301 (342)
Q Consensus 236 IV~RL~~VT~Gce-----t~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AGL-R~G~RL--Icg~sV~~l 301 (342)
.+|.+++|+-+-+ .+.++|||-.+|+||..+.+- -+|..+-....|+..|+ =.||-| |||..|.+-
T Consensus 37 ~iQkqdVvcvsG~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c 116 (505)
T KOG3549|consen 37 SIQKQDVVCVSGPPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTAC 116 (505)
T ss_pred hhhccceEecCCCCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecC
Confidence 4688888877664 477889999999999999633 27888888999998884 589999 999999999
Q ss_pred CHHHHHHHHhccC-cEEEEE
Q psy6995 302 SHDQMVDLLKTSS-LVTVTV 320 (342)
Q Consensus 302 sHeq~vdlLrts~-~V~v~V 320 (342)
+||++|.+||+++ .|+++|
T Consensus 117 ~HeevV~iLRNAGdeVtlTV 136 (505)
T KOG3549|consen 117 PHEEVVNILRNAGDEVTLTV 136 (505)
T ss_pred ChHHHHHHHHhcCCEEEEEe
Confidence 9999999999887 588777
No 18
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.54 E-value=0.00015 Score=69.54 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=65.3
Q ss_pred hHHHHHHhh-hccCCCCCceEEE-e--ecC-CCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCC
Q psy6995 232 ELMEVVVRL-RAATPGSPAQELT-L--KRN-GLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301 (342)
Q Consensus 232 dl~EIV~RL-~~VT~Gcet~El~-L--rR~-~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~l 301 (342)
-+.+++.+| ...|+=..+.+.. . .+. ...++||.+..+ + +|..|.++++|++||||+||+| |||++|...
T Consensus 18 ~l~~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~ 97 (334)
T TIGR00225 18 AIKGMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGM 97 (334)
T ss_pred HHHHHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCC
Confidence 456677776 3444332222211 1 112 336789998643 2 7899999999999999999999 999999999
Q ss_pred CHHHHHHHHhc--cCcEEEEEeCC
Q psy6995 302 SHDQMVDLLKT--SSLVTVTVIPA 323 (342)
Q Consensus 302 sHeq~vdlLrt--s~~V~v~VipP 323 (342)
+.+++..+|+. ...|.+++...
T Consensus 98 ~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 98 SLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred CHHHHHHhccCCCCCEEEEEEEeC
Confidence 88899998864 23677877754
No 19
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.46 E-value=0.00053 Score=67.82 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=43.5
Q ss_pred Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995 269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP 322 (342)
Q Consensus 269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip 322 (342)
+| +|++|.++++|++|||++||+| |||++|.+ .+++.++|+. ...+.+++..
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R 419 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILR 419 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEE
Confidence 45 8999999999999999999999 99999975 5678888864 3468888764
No 20
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.45 E-value=0.00029 Score=69.56 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=66.4
Q ss_pred hhHHHHHHhh-hccCCCCCceEEE-e---ecCCCCCCCeEEcC--C------c-eEEEEcccchhhhhCCCCCCEE--ee
Q psy6995 231 DELMEVVVRL-RAATPGSPAQELT-L---KRNGLGQLGFHVQP--D------G-LVTEVEHMGLAYQEGLKQGCRL--IC 294 (342)
Q Consensus 231 edl~EIV~RL-~~VT~Gcet~El~-L---rR~~~gqLGFhV~~--E------G-~Vt~VE~~g~Ae~AGLR~G~RL--Ic 294 (342)
+.+.+++..| ...|+=....+.. + .+....++|+.+.. + | +|+.|.++++|++|||++||+| ||
T Consensus 51 ~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~In 130 (389)
T PLN00049 51 AAIRKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAID 130 (389)
T ss_pred HHHHHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence 4577788888 5566433222221 1 12334688888742 1 4 6889999999999999999999 99
Q ss_pred cccccCCCHHHHHHHHhc--cCcEEEEEeC
Q psy6995 295 KVAVSTLSHDQMVDLLKT--SSLVTVTVIP 322 (342)
Q Consensus 295 g~sV~~lsHeq~vdlLrt--s~~V~v~Vip 322 (342)
|++|...+.+++..+|+. ...|.|++..
T Consensus 131 G~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 131 GTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred CEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 999999999999999973 2357777654
No 21
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.42 E-value=0.0004 Score=53.46 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=42.0
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEeC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVIP 322 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vip 322 (342)
.|..|.++++|++||||+||.| |||+.+. +.+++.++|... ..+.+++..
T Consensus 13 ~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 13 VIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred EEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEE
Confidence 7889999999999999999999 9999998 457888888753 357777764
No 22
>KOG0606|consensus
Probab=97.36 E-value=0.00027 Score=78.55 Aligned_cols=71 Identities=28% Similarity=0.439 Sum_probs=57.9
Q ss_pred EEEeecCCCCCCCeEEcC-------------CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995 251 ELTLKRNGLGQLGFHVQP-------------DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS- 314 (342)
Q Consensus 251 El~LrR~~~gqLGFhV~~-------------EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~- 314 (342)
.|+++|.+ .+|||.+.. +=+|..|+.+++|..|||++||-| |||+.|..|.|.||++||-.+.
T Consensus 629 pI~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 45666655 789998721 148999999999999999999999 9999999999999999997544
Q ss_pred cEEEEEeC
Q psy6995 315 LVTVTVIP 322 (342)
Q Consensus 315 ~V~v~Vip 322 (342)
+|.+.+.|
T Consensus 708 ~v~~~ttp 715 (1205)
T KOG0606|consen 708 KVTLRTTP 715 (1205)
T ss_pred eeEEEeec
Confidence 66666543
No 23
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.28 E-value=0.0015 Score=65.51 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=35.9
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT 312 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt 312 (342)
+|++|+++++|++||||+||+| |||+.|. +.+++.+.++.
T Consensus 224 vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~ 265 (449)
T PRK10779 224 VLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRD 265 (449)
T ss_pred EEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence 7999999999999999999999 9999985 56788888864
No 24
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.12 E-value=0.0008 Score=51.10 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=40.3
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP 322 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip 322 (342)
+|.+|.++++|+++||++||.| |||+.+.+. +++.+++.. ...+.+.+..
T Consensus 27 ~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 27 LVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLR 81 (90)
T ss_pred EEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 7889999999999999999999 999998754 456667754 3357777754
No 25
>KOG3552|consensus
Probab=97.10 E-value=0.00053 Score=75.42 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=64.9
Q ss_pred CceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCC
Q psy6995 248 PAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPAL 324 (342)
Q Consensus 248 et~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~ 324 (342)
+++.+.++||...+.||-.----+|+.|.+||+++ +-|.+||.| |||++|.+.+-|.+|||+|... .|-|+|+.|.
T Consensus 55 ~pr~vq~~r~~~lGFgfvagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qPc 133 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGFVAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQPC 133 (1298)
T ss_pred cchhhhhhccccccceeecCCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEeccc
Confidence 68888899997544444332113999999999986 789999999 9999999999999999999655 6899999994
Q ss_pred CCCCC
Q psy6995 325 SDGTP 329 (342)
Q Consensus 325 ~dg~P 329 (342)
.-+.|
T Consensus 134 ~~p~p 138 (1298)
T KOG3552|consen 134 VLPGP 138 (1298)
T ss_pred cCCCc
Confidence 33333
No 26
>PRK10139 serine endoprotease; Provisional
Probab=97.09 E-value=0.0032 Score=63.89 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=41.7
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip 322 (342)
+|+.|.++++|++||||+||+| |||++|.+ -+++.++|+.. ..+.+++..
T Consensus 393 ~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R 445 (455)
T PRK10139 393 KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVR 445 (455)
T ss_pred EEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEE
Confidence 6899999999999999999999 99998865 67888998753 356666654
No 27
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.96 E-value=0.0042 Score=62.06 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=55.1
Q ss_pred hhhHHHHHHhhhccCCCCCceEEEeecCCCCC-----CCeEEcC---CceEEEEcccchhhhhCCCCCCEE--eeccccc
Q psy6995 230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQ-----LGFHVQP---DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVS 299 (342)
Q Consensus 230 ~edl~EIV~RL~~VT~Gcet~El~LrR~~~gq-----LGFhV~~---EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~ 299 (342)
..+.+++-+|+.... ....+++.|++... +|+.... .-.|.+|.++++|++||||+||+| |||++|.
T Consensus 160 v~~~~dl~~~ia~~~---~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~ 236 (420)
T TIGR00054 160 IPGFKDVRQQIADIA---GEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLR 236 (420)
T ss_pred cCCHHHHHHHHHhhc---ccceEEEEEecCceEecccccceecCCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 344556666665554 46677877764431 2222111 137999999999999999999999 9999996
Q ss_pred CCCHHHHHHHHhc
Q psy6995 300 TLSHDQMVDLLKT 312 (342)
Q Consensus 300 ~lsHeq~vdlLrt 312 (342)
+ -+++.+.|+.
T Consensus 237 s--~~dl~~~l~~ 247 (420)
T TIGR00054 237 S--WTDFVSAVKE 247 (420)
T ss_pred C--HHHHHHHHHh
Confidence 4 6888888875
No 28
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.95 E-value=0.0011 Score=65.60 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC
Q psy6995 230 RDELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS 302 (342)
Q Consensus 230 ~edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls 302 (342)
.+.+++++.+|.- +.+|.-=..+. +.-.....||+.. ..| +|++|.++++|++|||++||+| |||+.|.+
T Consensus 215 ~~~~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~~~~lgl~~-~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~-- 291 (428)
T TIGR02037 215 SNMAKNVVDQLIEGGKVQRGWLGVTIQEVTSDLAKSLGLEK-QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISS-- 291 (428)
T ss_pred hHHHHHHHHHHHhcCcCcCCcCceEeecCCHHHHHHcCCCC-CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCC--
Confidence 3667788888764 33333222222 1111113445433 245 8999999999999999999999 99999875
Q ss_pred HHHHHHHHhc---cCcEEEEE
Q psy6995 303 HDQMVDLLKT---SSLVTVTV 320 (342)
Q Consensus 303 Heq~vdlLrt---s~~V~v~V 320 (342)
.+++.++|.. ...|++++
T Consensus 292 ~~~~~~~l~~~~~g~~v~l~v 312 (428)
T TIGR02037 292 FADLRRAIGTLKPGKKVTLGI 312 (428)
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 5556666643 23455554
No 29
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.93 E-value=0.003 Score=48.03 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=41.2
Q ss_pred CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995 268 PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP 322 (342)
Q Consensus 268 ~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip 322 (342)
++| +|..|.++++|+. ||++||.| |||+++.+ .+++..+|.. ...+.+++..
T Consensus 7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r 64 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKR 64 (79)
T ss_pred ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEE
Confidence 456 7889999999997 89999999 99999874 6778888864 2357777753
No 30
>KOG3542|consensus
Probab=96.90 E-value=0.0014 Score=70.68 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=66.6
Q ss_pred hhccCCCC----CceEEEeecCCC-CCCCeEEcCC---c---eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHH
Q psy6995 240 LRAATPGS----PAQELTLKRNGL-GQLGFHVQPD---G---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQM 306 (342)
Q Consensus 240 L~~VT~Gc----et~El~LrR~~~-gqLGFhV~~E---G---~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~ 306 (342)
|.++--.| ..+.++|.|... ..|=|.+.+- | ||.+|++++-|.++||+.||.| ||||+...++..++
T Consensus 523 LrLLNIACaaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA 602 (1283)
T KOG3542|consen 523 LRLLNIACAAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKA 602 (1283)
T ss_pred eeehhhhhhhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHH
Confidence 33455567 457888988644 6788887432 3 9999999999999999999999 99999999999999
Q ss_pred HHHHhccCcEEEEE
Q psy6995 307 VDLLKTSSLVTVTV 320 (342)
Q Consensus 307 vdlLrts~~V~v~V 320 (342)
.++||+...+.++|
T Consensus 603 ~eiLrnnthLtltv 616 (1283)
T KOG3542|consen 603 EEILRNNTHLTLTV 616 (1283)
T ss_pred HHHhcCCceEEEEE
Confidence 99999877766665
No 31
>PRK10942 serine endoprotease; Provisional
Probab=96.71 E-value=0.01 Score=60.58 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=42.5
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP 322 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip 322 (342)
+|++|.++++|+++|||+||+| |||+.|.+ -+++.+.|++.. .+.|+|..
T Consensus 411 vV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R 463 (473)
T PRK10942 411 VVDNVKPGTPAAQIGLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQR 463 (473)
T ss_pred EEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEE
Confidence 6899999999999999999999 99999987 588888887643 56666654
No 32
>PRK10942 serine endoprotease; Provisional
Probab=96.41 E-value=0.0044 Score=63.18 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCH
Q psy6995 231 DELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH 303 (342)
Q Consensus 231 edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsH 303 (342)
+-++.++..|.- |++|.--..+. |.-+-..++|..- ..| +|++|+++++|++||||+||.| |||+.|.+.
T Consensus 270 ~~~~~v~~~l~~~g~v~rg~lGv~~~~l~~~~a~~~~l~~-~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~-- 346 (473)
T PRK10942 270 NMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF-- 346 (473)
T ss_pred HHHHHHHHHHHhccccccceeeeEeeecCHHHHHhcCCCC-CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--
Confidence 557778887753 55554222222 2111112333332 245 8899999999999999999999 999999764
Q ss_pred HHHHHHHhc---cCcEEEEE
Q psy6995 304 DQMVDLLKT---SSLVTVTV 320 (342)
Q Consensus 304 eq~vdlLrt---s~~V~v~V 320 (342)
+++...|.. ..++.+++
T Consensus 347 ~dl~~~l~~~~~g~~v~l~v 366 (473)
T PRK10942 347 AALRAQVGTMPVGSKLTLGL 366 (473)
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 556555542 23455544
No 33
>KOG3209|consensus
Probab=96.38 E-value=0.008 Score=65.15 Aligned_cols=82 Identities=30% Similarity=0.546 Sum_probs=62.5
Q ss_pred eEEE--eecCCCCCCCeEEcCC---c---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC---c
Q psy6995 250 QELT--LKRNGLGQLGFHVQPD---G---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---L 315 (342)
Q Consensus 250 ~El~--LrR~~~gqLGFhV~~E---G---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~ 315 (342)
.|+. |+|.- -+.||.+-+- | +|-.+.+.|.|++-| ||.||-| |+|.+|..-+|.++|+||.+++ .
T Consensus 649 k~ldV~L~rke-sGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh 727 (984)
T KOG3209|consen 649 KELDVFLRRKE-SGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH 727 (984)
T ss_pred cceeEEEEeec-cccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence 5555 66654 6799999421 2 888999999999877 9999999 8899999999999999997654 4
Q ss_pred EEEEEeCCC----CCCCCCcC
Q psy6995 316 VTVTVIPAL----SDGTPRRY 332 (342)
Q Consensus 316 V~v~VipP~----~dg~PRRg 332 (342)
|.|+|-.+. ..++||-+
T Consensus 728 V~LtVRRkv~~~~~~rsp~~s 748 (984)
T KOG3209|consen 728 VNLTVRRKVRTGPARRSPRNS 748 (984)
T ss_pred eEEEEeeeeeeccccCCcccc
Confidence 777775543 34455543
No 34
>PRK10139 serine endoprotease; Provisional
Probab=96.34 E-value=0.0079 Score=61.04 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=50.7
Q ss_pred hhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCH
Q psy6995 231 DELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH 303 (342)
Q Consensus 231 edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsH 303 (342)
+.++.|+..|.- |++|.--..+. |.......||... ..| +|.+|.++++|++||||+||.| |||+.|.+ .
T Consensus 249 ~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~-~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~ 325 (455)
T PRK10139 249 NMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV-QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--F 325 (455)
T ss_pred HHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCC-CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--H
Confidence 556667766642 44443222221 2111113344432 235 8999999999999999999999 99999875 5
Q ss_pred HHHHHHHhc
Q psy6995 304 DQMVDLLKT 312 (342)
Q Consensus 304 eq~vdlLrt 312 (342)
+++...|..
T Consensus 326 ~dl~~~l~~ 334 (455)
T PRK10139 326 AELRSRIAT 334 (455)
T ss_pred HHHHHHHHh
Confidence 777777753
No 35
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.29 E-value=0.0043 Score=62.37 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=39.6
Q ss_pred CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995 269 DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP 322 (342)
Q Consensus 269 EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip 322 (342)
.-+|++|+++++|++||||+||.| |||+.|.+- +++...+.+ ..++++++.+
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R 183 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAP 183 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEe
Confidence 458999999999999999999999 999999865 555444432 2246666653
No 36
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.06 E-value=0.016 Score=50.68 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=44.9
Q ss_pred CCCCceEEEeec----CCCCCCCeEEcCC--------c-eEEEEcccchhhhhCCCC-CCEE--eecccccCCCHHHHHH
Q psy6995 245 PGSPAQELTLKR----NGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEGLKQ-GCRL--ICKVAVSTLSHDQMVD 308 (342)
Q Consensus 245 ~Gcet~El~LrR----~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AGLR~-G~RL--Icg~sV~~lsHeq~vd 308 (342)
++..+|++.+.= .+.+.||++|+.+ + =|.+|.++++|++|||++ .|-| +++..+. +.+++.+
T Consensus 7 k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~ 84 (138)
T PF04495_consen 7 KGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFE 84 (138)
T ss_dssp TTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHH
T ss_pred CCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHH
Confidence 566678887532 2458999999765 2 478999999999999999 5999 7777776 4578888
Q ss_pred HHhc
Q psy6995 309 LLKT 312 (342)
Q Consensus 309 lLrt 312 (342)
++.+
T Consensus 85 ~v~~ 88 (138)
T PF04495_consen 85 LVEA 88 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 37
>PRK10898 serine endoprotease; Provisional
Probab=96.02 E-value=0.0088 Score=58.61 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=40.0
Q ss_pred Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995 269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP 322 (342)
Q Consensus 269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip 322 (342)
.| +|.+|+++++|++||||+||.| |||+.|.+. +++.+.|. ....+.|++..
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 45 7889999999999999999999 999998764 44444443 33457777763
No 38
>KOG1892|consensus
Probab=95.96 E-value=0.025 Score=63.19 Aligned_cols=111 Identities=23% Similarity=0.371 Sum_probs=77.3
Q ss_pred ccceeeecccCCcEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCC-----
Q psy6995 195 AKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPD----- 269 (342)
Q Consensus 195 c~dVIGWt~s~~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~E----- 269 (342)
|| ++--..+-....||+|.-+.=+=... -.++-+.|+ +--|...++|+.| ++.|..+-+-
T Consensus 893 Cr-l~~~p~spg~wT~ymh~~~~~ss~a~---------~n~l~q~~~---~~pei~~vtL~Kn--nGmGLSIVAAkGaGq 957 (1629)
T KOG1892|consen 893 CR-LIPHPRSPGTWTIYMHGADYESSLAR---------ENELAQPLR---KEPEIITVTLKKN--NGMGLSIVAAKGAGQ 957 (1629)
T ss_pred ee-ecCCCCCCceeEEEeeccccccchhh---------hhhccchhh---cCCceEEEEEecc--CCceEEEEeeccCCc
Confidence 44 44444444445677765442111111 124444444 4456778889888 7888887221
Q ss_pred ---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh-ccCcEEEEE
Q psy6995 270 ---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320 (342)
Q Consensus 270 ---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr-ts~~V~v~V 320 (342)
| +|-+|.+||+|..-| |..||.| |+|+++..++.|...+|+. |+..|++-|
T Consensus 958 ~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leV 1016 (1629)
T KOG1892|consen 958 RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEV 1016 (1629)
T ss_pred cccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEeh
Confidence 3 899999999998866 8999999 9999999999999999995 666777765
No 39
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=95.78 E-value=0.013 Score=55.80 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=40.9
Q ss_pred c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995 270 G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP 322 (342)
Q Consensus 270 G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip 322 (342)
| .|+.|.++++|+++|||+||.| |||+++.+ .+++.+++. ....+.|+|..
T Consensus 192 G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R 248 (259)
T TIGR01713 192 GYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVER 248 (259)
T ss_pred EEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEE
Confidence 5 6778999999999999999999 99999975 455666554 44578888764
No 40
>KOG0609|consensus
Probab=95.64 E-value=0.034 Score=58.38 Aligned_cols=72 Identities=26% Similarity=0.471 Sum_probs=58.6
Q ss_pred eecCCCCCCCeEEcC--C--ceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeCCCC
Q psy6995 254 LKRNGLGQLGFHVQP--D--GLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIPALS 325 (342)
Q Consensus 254 LrR~~~gqLGFhV~~--E--G~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~VipP~~ 325 (342)
+.++..--||=.+.- . =||..+..||.|++.| |+.||.| |||.+|.+...+|+.++|+++ +.+++.+||-..
T Consensus 128 i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~ 207 (542)
T KOG0609|consen 128 IVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYR 207 (542)
T ss_pred EeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccccc
Confidence 555544556655532 2 3999999999999988 5789999 999999999999999999954 589999998866
No 41
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.63 E-value=0.016 Score=60.81 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=41.1
Q ss_pred CceEEEeecCC--CCCCCeEEcCCc---eEEEEcccchhhhhCCCCCCEE--eecc
Q psy6995 248 PAQELTLKRNG--LGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKV 296 (342)
Q Consensus 248 et~El~LrR~~--~gqLGFhV~~EG---~Vt~VE~~g~Ae~AGLR~G~RL--Icg~ 296 (342)
+..-++++... ..-||-.|..|| .|+.|+++|+|.+|||++||+| |||.
T Consensus 437 ~~~gL~~~~~~~~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 437 ERFGLTFTPKPREAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred hhcceEEEecCCCCcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 44445555532 368999999898 9999999999999999999999 9998
No 42
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.57 E-value=0.014 Score=56.99 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=41.9
Q ss_pred Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995 269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP 322 (342)
Q Consensus 269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip 322 (342)
.| +|..|.++++|++||||+||.| |||+.|.+ .+++.+.|.. ...|.+++..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEE
Confidence 35 7889999999999999999999 99999865 5666666653 3467777764
No 43
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.41 E-value=0.013 Score=60.16 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=35.4
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEe
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vi 321 (342)
.|..|.++++|++|||++||+| |||+.|.+. .++..++.. ..+.+.|.
T Consensus 1 ~I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~~-e~l~L~V~ 50 (433)
T TIGR03279 1 LISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCAD-EELELEVL 50 (433)
T ss_pred CcCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhcC-CcEEEEEE
Confidence 3678999999999999999999 999999654 344444432 34555544
No 44
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=94.79 E-value=0.032 Score=55.91 Aligned_cols=40 Identities=8% Similarity=0.253 Sum_probs=33.6
Q ss_pred ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995 270 GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK 311 (342)
Q Consensus 270 G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr 311 (342)
-+|++|+++++|++||||+||+| |||..+.+ .+++...+.
T Consensus 130 ~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~--~~dl~~~ia 171 (420)
T TIGR00054 130 PVIELLDKNSIALEAGIEPGDEILSVNGNKIPG--FKDVRQQIA 171 (420)
T ss_pred ceeeccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHH
Confidence 38999999999999999999999 99998765 456655554
No 45
>KOG3580|consensus
Probab=94.79 E-value=0.051 Score=58.49 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=53.1
Q ss_pred ceEEEeecCCCCCCCeEEcC--------Cc----eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995 249 AQELTLKRNGLGQLGFHVQP--------DG----LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS 314 (342)
Q Consensus 249 t~El~LrR~~~gqLGFhV~~--------EG----~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~ 314 (342)
--.+||.++..-+.|.-+.+ +| +|.+|-++|+|+ +-|+.|||| |||++..+..|.=+|+.||++.
T Consensus 9 QhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQqLrksg 87 (1027)
T KOG3580|consen 9 QHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG 87 (1027)
T ss_pred hheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence 34567777665555555521 12 799999999997 678999999 9999999999999999999887
Q ss_pred cE
Q psy6995 315 LV 316 (342)
Q Consensus 315 ~V 316 (342)
++
T Consensus 88 K~ 89 (1027)
T KOG3580|consen 88 KV 89 (1027)
T ss_pred cc
Confidence 64
No 46
>KOG3606|consensus
Probab=94.50 E-value=0.066 Score=53.01 Aligned_cols=85 Identities=28% Similarity=0.384 Sum_probs=67.8
Q ss_pred hhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCC--------------c-eEEEEcccchhhhhCCC-CCCEE--
Q psy6995 231 DELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPD--------------G-LVTEVEHMGLAYQEGLK-QGCRL-- 292 (342)
Q Consensus 231 edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~E--------------G-~Vt~VE~~g~Ae~AGLR-~G~RL-- 292 (342)
+-+.|-=+|..+.-.||| -.|||-+.+- | ||..+.++|.||..||- +.|.+
T Consensus 153 DivPEtHRRVRL~khG~e-----------kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlE 221 (358)
T KOG3606|consen 153 DIVPETHRRVRLHKHGSE-----------KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLE 221 (358)
T ss_pred cccchhhhheehhhcCCC-----------CCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEE
Confidence 445566677777777775 3566666411 3 89999999999999975 67887
Q ss_pred eecccccCCCHHHHHHHHh-ccCcEEEEEeCCCCC
Q psy6995 293 ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSD 326 (342)
Q Consensus 293 Icg~sV~~lsHeq~vdlLr-ts~~V~v~VipP~~d 326 (342)
|||--|+.-+-+|+.|++- +++.+-|+|-|.+..
T Consensus 222 VNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 222 VNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR 256 (358)
T ss_pred EcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence 9999999999999999985 889999999888765
No 47
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.45 Score=45.85 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=64.1
Q ss_pred hhHHHHHHhhhc---cCCCCCceEEEeecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHH
Q psy6995 231 DELMEVVVRLRA---ATPGSPAQELTLKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304 (342)
Q Consensus 231 edl~EIV~RL~~---VT~Gcet~El~LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHe 304 (342)
+.+..++.-|.. +.+|..-..+.-...... +||. ...| +|.+|.++++|.++|+++||-| +||+.+.. ..
T Consensus 231 ~~~~~v~~~l~~~G~v~~~~lgv~~~~~~~~~~-~g~~-~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~--~~ 306 (347)
T COG0265 231 NLVAPVLDELISKGKVVRGYLGVIGEPLTADIA-LGLP-VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVAS--LS 306 (347)
T ss_pred HHHHHHHHHHHHcCCccccccceEEEEcccccc-cCCC-CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccC--HH
Confidence 556666666664 667776666663333323 8877 4578 9999999999999999999999 99998865 55
Q ss_pred HHHHHHhccC---cEEEEEeCC
Q psy6995 305 QMVDLLKTSS---LVTVTVIPA 323 (342)
Q Consensus 305 q~vdlLrts~---~V~v~VipP 323 (342)
++.+.+.+.. .+.+.++..
T Consensus 307 ~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 307 DLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred HHHHHHhccCCCCEEEEEEEEC
Confidence 6666665322 577777665
No 48
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=92.58 E-value=0.25 Score=50.50 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=42.2
Q ss_pred CCCCeEEcCCce-EEEE--------cccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995 260 GQLGFHVQPDGL-VTEV--------EHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV 320 (342)
Q Consensus 260 gqLGFhV~~EG~-Vt~V--------E~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V 320 (342)
...|-.++.+|+ |... +.+++|++||||+||.| |||++|.+ -+++.++|+.. ..+.+++
T Consensus 96 ~~iGI~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 96 QSIGVKLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTI 167 (402)
T ss_pred EEEEEEEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEE
Confidence 356777777873 3332 23689999999999999 99999865 57788888643 2455554
No 49
>KOG3605|consensus
Probab=91.90 E-value=0.27 Score=53.36 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=63.7
Q ss_pred hhccCCCCCceEEEeecCCCCCCCeEEcCCc--------eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHH
Q psy6995 240 LRAATPGSPAQELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVD 308 (342)
Q Consensus 240 L~~VT~Gcet~El~LrR~~~gqLGFhV~~EG--------~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vd 308 (342)
|+..+|----+|+.+..-.-.-||--|-+-| +|+....+|+|++.| |--||+| |||.+++.|+-..--.
T Consensus 637 Le~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs 716 (829)
T KOG3605|consen 637 LEHFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQS 716 (829)
T ss_pred HHHhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHH
Confidence 4555555556788877655467787776554 789999999999987 8899999 9999999999887777
Q ss_pred HHh---ccCcEEEEEeCC
Q psy6995 309 LLK---TSSLVTVTVIPA 323 (342)
Q Consensus 309 lLr---ts~~V~v~VipP 323 (342)
.+| +...|+++|++.
T Consensus 717 ~Ik~~KnQT~VkltiV~c 734 (829)
T KOG3605|consen 717 IIKGLKNQTAVKLNIVSC 734 (829)
T ss_pred HHhcccccceEEEEEecC
Confidence 776 344577766653
No 50
>KOG3834|consensus
Probab=91.44 E-value=0.58 Score=48.55 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=60.5
Q ss_pred CCCCCceEEEeecCCCCC---CCeEEcCCc---------eEEEEcccchhhhhCCCCC-CEEeecccccCCCHHHHHHHH
Q psy6995 244 TPGSPAQELTLKRNGLGQ---LGFHVQPDG---------LVTEVEHMGLAYQEGLKQG-CRLICKVAVSTLSHDQMVDLL 310 (342)
Q Consensus 244 T~Gcet~El~LrR~~~gq---LGFhV~~EG---------~Vt~VE~~g~Ae~AGLR~G-~RLIcg~sV~~lsHeq~vdlL 310 (342)
+|..++|++.|.+...-+ ||..|..-. =|-+|+++++|+.||||++ |-||+=-+...-.-++...||
T Consensus 73 ~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~~eDl~~lI 152 (462)
T KOG3834|consen 73 SKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHEEEDLFTLI 152 (462)
T ss_pred cccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccchHHHHHHH
Confidence 578899999999975433 777775443 3779999999999999954 555655455666678888888
Q ss_pred h--ccCcEEEEEeCCCCC
Q psy6995 311 K--TSSLVTVTVIPALSD 326 (342)
Q Consensus 311 r--ts~~V~v~VipP~~d 326 (342)
. .+..+++.|..=++|
T Consensus 153 eshe~kpLklyVYN~D~d 170 (462)
T KOG3834|consen 153 ESHEGKPLKLYVYNHDTD 170 (462)
T ss_pred HhccCCCcceeEeecCCC
Confidence 6 344688877765554
No 51
>KOG3551|consensus
Probab=90.31 E-value=0.33 Score=50.10 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=54.4
Q ss_pred eEEEeecCCCCCCCeEEcCC---c---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccCc
Q psy6995 250 QELTLKRNGLGQLGFHVQPD---G---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL 315 (342)
Q Consensus 250 ~El~LrR~~~gqLGFhV~~E---G---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~~ 315 (342)
+.+.+..-..|+||-++.+- . +|..+-.+=.|.++| |..||-| |||.++..-+|+|.|+.|+-+.+
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk 160 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK 160 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence 55666666779999999632 1 677778888888776 8999999 99999999999999999986665
No 52
>KOG3571|consensus
Probab=88.56 E-value=1.5 Score=46.73 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=61.7
Q ss_pred CceEEEeecCCCCCCCeEEcC------Cc--eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC--
Q psy6995 248 PAQELTLKRNGLGQLGFHVQP------DG--LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-- 314 (342)
Q Consensus 248 et~El~LrR~~~gqLGFhV~~------EG--~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-- 314 (342)
...+++|.=....=||..+-+ || +|.++..+|+-+.- -+-+||-| ||.++..+++-+|+|+.||.++
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 445666666666779999843 34 99999999976654 48999999 9999999999999999999644
Q ss_pred --cEEEEEe---CCCCCC
Q psy6995 315 --LVTVTVI---PALSDG 327 (342)
Q Consensus 315 --~V~v~Vi---pP~~dg 327 (342)
.++++|. +|.+.+
T Consensus 329 ~gPi~ltvAk~~DP~~q~ 346 (626)
T KOG3571|consen 329 PGPIKLTVAKCWDPNPQS 346 (626)
T ss_pred CCCeEEEEeeccCCCCcc
Confidence 3777774 555544
No 53
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=85.95 E-value=1.7 Score=35.68 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=37.1
Q ss_pred eeeeeeeeccceEEEEEccCCcEEEeeeccceeeecc-cCCcEE
Q psy6995 167 LMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWAT-STNSLR 209 (342)
Q Consensus 167 ~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~-s~~~Lk 209 (342)
..++.|.||.+.|.++++.++++++++|-+.|.=|+. .....+
T Consensus 51 ~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~ 94 (140)
T PF00640_consen 51 PQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKR 94 (140)
T ss_dssp SEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETT
T ss_pred CeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcce
Confidence 3579999999999999999999999999999988888 444333
No 54
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=84.57 E-value=14 Score=30.33 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=55.8
Q ss_pred EEEEEeccCC----CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecC------c-eEEEEe
Q psy6995 154 CWQVSLEDSK----TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQG------E-VTRIHM 222 (342)
Q Consensus 154 ~W~V~v~D~s----~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rG------E-~i~l~~ 222 (342)
+|.|.+.... .+..-+|+|.|.++.|.|.+..++..++..|-+.|=-|-..++. .+++-| + -..+.+
T Consensus 4 ~f~V~v~~~~~~~~~~l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~--F~fEaGRrc~tG~G~f~f~t 81 (100)
T PF02174_consen 4 VFQVTVQPTELSERCGLSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGI--FSFEAGRRCPTGEGLFWFQT 81 (100)
T ss_dssp EEEEEEECEHHHHCSSSEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTE--EEEEESTTSTTCSEEEEEEE
T ss_pred EEEEEEEECCCCcCCCceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCE--EEEEECCcCCCCCcEEEEEe
Confidence 6999774443 23345899999999999999999999999999999888664443 333333 3 334454
Q ss_pred cCCCCCChhhHHHHHHh
Q psy6995 223 REGGGGDRDELMEVVVR 239 (342)
Q Consensus 223 ~e~~~~~~edl~EIV~R 239 (342)
.+ +++|-+.|.+
T Consensus 82 ~~-----a~~I~~~v~~ 93 (100)
T PF02174_consen 82 PD-----AEEIFETVER 93 (100)
T ss_dssp ST-----HHHHHHHHHH
T ss_pred CC-----HHHHHHHHHH
Confidence 44 4666666654
No 55
>KOG3129|consensus
Probab=84.30 E-value=1.9 Score=41.36 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=41.8
Q ss_pred eEEEEcccchhhhhCCCCCCEEeecccccCCCHHHHHH---H-------------HhccCcEEEEEeCCCCCCCCCcCCC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVD---L-------------LKTSSLVTVTVIPALSDGTPRRYAD 334 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RLIcg~sV~~lsHeq~vd---l-------------Lrts~~V~v~VipP~~dg~PRRgc~ 334 (342)
+|.+|-++++|..|||+.||-||-=.+|.+.+|..+.. . +|...+|.+.+.|--=.|+-=-||.
T Consensus 142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~ 221 (231)
T KOG3129|consen 142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCN 221 (231)
T ss_pred EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeee
Confidence 78999999999999999999994434455555543221 1 1233455666666655565556665
No 56
>KOG3580|consensus
Probab=83.81 E-value=1.1 Score=48.79 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=41.6
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS 314 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~ 314 (342)
||..|..+++|++-||+-||.| ||.+..-+|.-|++|.+|-..+
T Consensus 432 FVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lP 477 (1027)
T KOG3580|consen 432 FVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELP 477 (1027)
T ss_pred EEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCC
Confidence 9999999999999999999999 9999999999999999997544
No 57
>PF12812 PDZ_1: PDZ-like domain
Probab=83.50 E-value=0.79 Score=36.62 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.0
Q ss_pred CCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995 260 GQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT 312 (342)
Q Consensus 260 gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt 312 (342)
-||++.+. |+++.+-.|++|++.|+..|.-| ||++++.+| ++.++.++.
T Consensus 24 R~~~~~~~--gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ 74 (78)
T PF12812_consen 24 RQYGIPVG--GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKK 74 (78)
T ss_pred HHhCCCCC--EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHh
Confidence 46777765 89999999999999999999999 999999876 455555543
No 58
>KOG3938|consensus
Probab=81.60 E-value=2.9 Score=41.65 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=57.7
Q ss_pred ceEEEeecCCCCCCCeEEcCCc----eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC---cEEE
Q psy6995 249 AQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---LVTV 318 (342)
Q Consensus 249 t~El~LrR~~~gqLGFhV~~EG----~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~V~v 318 (342)
++|+.+..+. +.||..+-++| ||-.+-+++.-.+- -+.+||-| |||++++.--|-|+..+|+.-. .-++
T Consensus 127 ~kEv~v~Kse-dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl 205 (334)
T KOG3938|consen 127 AKEVEVVKSE-DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL 205 (334)
T ss_pred ceeEEEEecc-cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence 5566555443 77888998786 88888888876543 57889999 9999999999999999998533 4667
Q ss_pred EEeCCC
Q psy6995 319 TVIPAL 324 (342)
Q Consensus 319 ~VipP~ 324 (342)
.+|.|-
T Consensus 206 rLiePk 211 (334)
T KOG3938|consen 206 RLIEPK 211 (334)
T ss_pred Eeeccc
Confidence 777663
No 59
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=80.74 E-value=1.8 Score=42.44 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred hhhhCCCCCCEE--eecccccCCCHH-HHHHHHhccCcEEEEEeC
Q psy6995 281 AYQEGLKQGCRL--ICKVAVSTLSHD-QMVDLLKTSSLVTVTVIP 322 (342)
Q Consensus 281 Ae~AGLR~G~RL--Icg~sV~~lsHe-q~vdlLrts~~V~v~Vip 322 (342)
=.++|||+||-+ |||+++.+..+. ++.+.|++...++|+|..
T Consensus 220 F~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeR 264 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLR 264 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEE
Confidence 478999999999 999999865542 466777888888888853
No 60
>KOG3532|consensus
Probab=79.37 E-value=4.4 Score=44.86 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=51.4
Q ss_pred eecCCC-CCCCeEEcCCc----eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-cCcEEEEEeC
Q psy6995 254 LKRNGL-GQLGFHVQPDG----LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVTVTVIP 322 (342)
Q Consensus 254 LrR~~~-gqLGFhV~~EG----~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~v~Vip 322 (342)
+-|... -|.|.-.+..| -|+.|++.++|.+|.|.+||-| |||++|. +-+|+...|++ .+.|.++++.
T Consensus 379 f~~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 379 FSRYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred hccccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 344433 46665554444 5789999999999999999999 9998886 47899999985 4478877765
No 61
>KOG3651|consensus
Probab=76.62 E-value=7.5 Score=39.59 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=55.8
Q ss_pred EEEeecCCCCCCCeEEcCCc------eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995 251 ELTLKRNGLGQLGFHVQPDG------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320 (342)
Q Consensus 251 El~LrR~~~gqLGFhV~~EG------~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V 320 (342)
.++|..+..+-.|.++-+-+ +|..|-.+++|.+-| +|-||.| |||.+|-.-+.-++..++.++. .|++..
T Consensus 7 ~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ihy 86 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHY 86 (429)
T ss_pred cEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEe
Confidence 34566777777888885443 888999999998866 8999999 9999999999999999998655 455543
No 62
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=75.06 E-value=5.9 Score=35.15 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=39.9
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEE
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIy 211 (342)
-.|.|-||.+.|-|+|+.|+.++.+.|=+.|.=|+.+....++|
T Consensus 50 ~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~F 93 (138)
T cd01268 50 VKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGF 93 (138)
T ss_pred CEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCcEE
Confidence 36999999999999999999999999999999998887777766
No 63
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=74.96 E-value=6.8 Score=32.09 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=37.2
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEE
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIy 211 (342)
.++.|-||.+.|-+++..++.+++++|-+.|.-.+......++|
T Consensus 44 ~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F 87 (134)
T smart00462 44 QKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVF 87 (134)
T ss_pred CEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEE
Confidence 57999999999999999999999999999988777765544443
No 64
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=68.54 E-value=16 Score=30.90 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=45.0
Q ss_pred EEEEEeccCCCC---eeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecCc
Q psy6995 154 CWQVSLEDSKTG---SLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGE 216 (342)
Q Consensus 154 ~W~V~v~D~s~~---~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rGE 216 (342)
+|+|.+.+-+.. ..-+|+|.+.++.|.|++..++..+...|-..|=.|-.++ =..+|+-|.
T Consensus 3 ~w~v~~~~~~~~~~~~~G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~--~~FsfEaGR 66 (98)
T smart00310 3 FWVTIRKTEGLERCKNSGSYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDK--NFFFFEAGR 66 (98)
T ss_pred eeEEEEeChhhhcCCCCeeEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCC--CEEEEEccC
Confidence 699988665521 1347999999999999999999999999988877776533 334444443
No 65
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=64.67 E-value=15 Score=31.64 Aligned_cols=43 Identities=7% Similarity=0.250 Sum_probs=38.4
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEE
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIy 211 (342)
++-.|-||++.|-|+|+.++.++.++|=+.|.=|....+. +.|
T Consensus 40 ~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~-r~F 82 (123)
T cd01216 40 KDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDV-RDF 82 (123)
T ss_pred eEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCC-cEE
Confidence 4678889999999999999999999999999999988665 665
No 66
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=62.85 E-value=19 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.416 Sum_probs=33.6
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCC
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTN 206 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~ 206 (342)
.++.|-||.+.|-|++..++++++++|=++|.=|+....
T Consensus 42 ~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~ 80 (123)
T cd00934 42 QKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPD 80 (123)
T ss_pred CEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCC
Confidence 479999999999999999999999998888776666643
No 67
>KOG1320|consensus
Probab=59.72 E-value=14 Score=38.94 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=34.9
Q ss_pred eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK 311 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr 311 (342)
+|..|-++++|..+|+..||-| |||++|.++.| +.++|+
T Consensus 401 ~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~--l~~~i~ 441 (473)
T KOG1320|consen 401 LVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH--LYELIE 441 (473)
T ss_pred EEEEeccCCCcccccccCCCEEEEECCEEeechHH--HHHHHH
Confidence 6779999999999999999999 99999999877 566665
No 68
>KOG4407|consensus
Probab=59.18 E-value=5.5 Score=46.76 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=48.8
Q ss_pred ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh-ccCcEEEEEeCCCC
Q psy6995 270 GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALS 325 (342)
Q Consensus 270 G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr-ts~~V~v~VipP~~ 325 (342)
=||-+|++.|+|.-|-|+-|||+ ||-+.++-+....++..++ |-..+.+.|+|-..
T Consensus 145 ~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~ 203 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKEC 203 (1973)
T ss_pred hhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccC
Confidence 38999999999999999999999 9999999999999999998 55566666666443
No 69
>PF14430 Imm1: Immunity protein Imm1
Probab=58.29 E-value=26 Score=29.62 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCC--CCCCCeEEcCC-ceEEEEcccchhhhh
Q psy6995 208 LRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNG--LGQLGFHVQPD-GLVTEVEHMGLAYQE 284 (342)
Q Consensus 208 LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~--~gqLGFhV~~E-G~Vt~VE~~g~Ae~A 284 (342)
|+.||++++-=.+.+. +.+|+.+++.+|....... ..++.+..+. ...|+.-++++ |++.-......+|..
T Consensus 1 l~~~~~~~~~~~~~v~-----t~~evd~~l~~l~~~~~~~-~~~l~~~~~~~~~~~l~vgv~g~~g~l~~~~~d~~~~~~ 74 (127)
T PF14430_consen 1 LEAWYDRRQGHPVEVA-----TPAEVDELLDRLAGPGGPQ-VVELWIDGDPWGYPYLGVGVNGDYGVLHYFGDDDGFWSS 74 (127)
T ss_pred CceEEecCCCCeeEeC-----CHHHHHHHHHHHhccCCCc-eEEEEeCCCCCCCceEEEEecCCEEEEEEEeCCCCeEec
Confidence 4667877743333333 3589999999997765443 7888887763 34555555444 455544443344433
No 70
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=57.53 E-value=42 Score=27.65 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=28.3
Q ss_pred chhhhhCCC--CCCEE--eecccccCCCHHHHHHHHh-ccC-cEEEEEeCCCC
Q psy6995 279 GLAYQEGLK--QGCRL--ICKVAVSTLSHDQMVDLLK-TSS-LVTVTVIPALS 325 (342)
Q Consensus 279 g~Ae~AGLR--~G~RL--Icg~sV~~lsHeq~vdlLr-ts~-~V~v~VipP~~ 325 (342)
++-.+.|+. .||.| |||+.|.+.. .+-.+|. ++. .|.|+|-++..
T Consensus 31 sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 31 SPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp -GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred CCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence 555666665 99999 9999998763 3566776 444 68888888765
No 71
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=55.32 E-value=30 Score=29.31 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=36.8
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEE
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIy 211 (342)
..+.|-||.+-|-++|+.+++++.++|=+.|.=|+......++|
T Consensus 45 ~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~F 88 (132)
T cd01267 45 PKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFF 88 (132)
T ss_pred CeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEE
Confidence 46999999999999999999999999988887777665555553
No 72
>KOG3834|consensus
Probab=50.40 E-value=24 Score=37.08 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=46.9
Q ss_pred ecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCC-CEE--eecccccCCCHHHHHHHHh-ccCcEEEEEeC
Q psy6995 255 KRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQG-CRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIP 322 (342)
Q Consensus 255 rR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G-~RL--Icg~sV~~lsHeq~vdlLr-ts~~V~v~Vip 322 (342)
.+++.+-.||||. .|+..+.|.+|||-+= |-| |||-.+.. ..+++.++|| ++.+|+++|+.
T Consensus 8 ~~p~ggteg~hvl------kVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n 72 (462)
T KOG3834|consen 8 HIPGGGTEGYHVL------KVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYN 72 (462)
T ss_pred ccccCCceeEEEE------EeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEe
Confidence 5667789999996 7999999999999874 444 88865543 3578888998 66678887754
No 73
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=49.78 E-value=35 Score=32.86 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=39.1
Q ss_pred CCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCc---EEEEEeC
Q psy6995 268 PDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL---VTVTVIP 322 (342)
Q Consensus 268 ~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~---V~v~Vip 322 (342)
...++..|...++|..+|++.||++ +|+..+.+..--+.......... +.+.+..
T Consensus 129 ~~~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 129 ASPVVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred ccCeeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 3456668999999999999999999 99998887654433333332222 5666655
No 74
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=42.01 E-value=39 Score=34.13 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=30.0
Q ss_pred CcEEEeeeccceeeecccCCcEEEEeecCc-eEEEEecCCCCCChhhHHHHHH
Q psy6995 187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGE-VTRIHMREGGGGDRDELMEVVV 238 (342)
Q Consensus 187 ~~VVFncpc~dVIGWt~s~~~LkIyY~rGE-~i~l~~~e~~~~~~edl~EIV~ 238 (342)
..|||-| ||....+.|.||||-.| ++.+..-. .++++++++
T Consensus 269 ~~VVF~C------G~v~~~~~l~iyYGaADt~v~la~~~-----~~ei~~~l~ 310 (314)
T COG2152 269 PNVVFPC------GAVLLGDELLIYYGAADTSVGLAEIP-----LDEIMELLK 310 (314)
T ss_pred CcEEeec------ceEEECCEEEEEeeccccEEEEEEee-----HHHHHHHHH
Confidence 3488877 77778899999999999 66665444 366666554
No 75
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=40.62 E-value=71 Score=31.69 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=44.8
Q ss_pred eEEE-eecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995 250 QELT-LKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP 322 (342)
Q Consensus 250 ~El~-LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip 322 (342)
..++ ++|++ +-+||.+.. .-+...-++.|||.||-. ||+.++. .+++|..+|+ +-..+.++|+.
T Consensus 195 Irltpv~r~e-ki~Gyr~~p------gkd~slF~~sglq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R 264 (275)
T COG3031 195 IRLTPVIRNE-KIEGYRFEP------GKDGSLFYKSGLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIR 264 (275)
T ss_pred eEeeeEeeCC-ceEEEEecC------CCCcchhhhhcCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEe
Confidence 3445 44544 667777753 234566789999999999 9998764 4777777764 66678888874
No 76
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=39.13 E-value=53 Score=29.46 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=34.9
Q ss_pred eeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEE
Q psy6995 169 HCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211 (342)
Q Consensus 169 ~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIy 211 (342)
--.|-||.+-|-++|+.|+.++++.|=.-|-=-+.+.+..|+|
T Consensus 54 kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~F 96 (139)
T cd01215 54 RITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAF 96 (139)
T ss_pred eEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEE
Confidence 5789999999999999999999998877755445555666665
No 77
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=38.13 E-value=1.5e+02 Score=21.12 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred eeeeeeccceEEEEEccCCcEEE--eeecccee-eeccc----CCcEEEEeec--CceEEEEecCCCCCChhhHHHHHHh
Q psy6995 169 HCVLAISTDSVVLVEEQSRDLVF--VAPAKSVL-GWATS----TNSLRLYHHQ--GEVTRIHMREGGGGDRDELMEVVVR 239 (342)
Q Consensus 169 ~ClLGIS~e~lVLIe~~s~~VVF--ncpc~dVI-GWt~s----~~~LkIyY~r--GE~i~l~~~e~~~~~~edl~EIV~R 239 (342)
.+++-++...|.+.........- .++-.++. ..... ...+.|.+.. ..++.+.+.+. +|....+..
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~-----~~~~~W~~a 95 (99)
T cd00900 21 RRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSE-----EEAQEWVEA 95 (99)
T ss_pred eeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCH-----HHHHHHHHH
Confidence 56677788888888888766553 45544433 22221 3568888776 77888877664 778887777
Q ss_pred hh
Q psy6995 240 LR 241 (342)
Q Consensus 240 L~ 241 (342)
|+
T Consensus 96 l~ 97 (99)
T cd00900 96 LQ 97 (99)
T ss_pred Hh
Confidence 65
No 78
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=36.22 E-value=57 Score=25.77 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=36.4
Q ss_pred cEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEe
Q psy6995 207 SLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTL 254 (342)
Q Consensus 207 ~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~L 254 (342)
++-++.++..|+.+-...+ +.++|+++..+|... +|.....+++
T Consensus 33 ~~Hvhl~~~~ClEvivv~G---~~~~I~~l~~~l~~~-kGV~~~~l~~ 76 (78)
T PF08753_consen 33 SLHVHLDHDNCLEVIVVRG---PADRIKELAEKLRSL-KGVKHVKLSL 76 (78)
T ss_dssp EEEEEESSSEEEEEEEEEE---EHHHHHHHHHHHHTS-TTEEEEEEEE
T ss_pred eeEEeecCCCeEEEEEEEc---CHHHHHHHHHHHhcc-CCeeEEEEEE
Confidence 4678888888999888886 889999999999988 8877666653
No 79
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=36.13 E-value=34 Score=25.35 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=29.3
Q ss_pred Chhhh-hhhhcccCC-ccccccccccCCCCceEEEEEEeeecccccccceeeEEEEEEeccc
Q psy6995 2 DPDEI-EKVLFENIP-LEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSEL 61 (342)
Q Consensus 2 ~~~~~-~~~~~~~~~-keHqN~fG~DE~LGPvavSi~rE~~e~~~~~~~~y~YRiiiRtsel 61 (342)
|+|+- ..-..|.|. ....+||-+|+.=| .+.+.+ .++..+. -.|.+.|+-+|.
T Consensus 2 D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg--~i~~~~-~LD~e~~----~~y~l~v~a~D~ 56 (79)
T smart00112 2 DADSGENGKVTYSILSGNEDGLFSIDPETG--EITTTK-PLDREEQ----PEYTLTVEATDG 56 (79)
T ss_pred CCCCCcCcEEEEEEecCCCCCEEEEeCCcc--EEEeCC-ccCeeCC----CeEEEEEEEEEC
Confidence 55552 222445553 33349999999988 444444 5553222 236666666653
No 80
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=35.94 E-value=92 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.2
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccc
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKS 197 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~d 197 (342)
..+.|-||.+-|-++|+.|++++++.+=+.
T Consensus 55 ~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ 84 (142)
T cd01273 55 QKVEIRISIDGVIIAEPKTKAPMHTFPLGR 84 (142)
T ss_pred cEEEEEEECCeEEEEEcCCCcEEEEcCcce
Confidence 479999999999999999999998877443
No 81
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=34.22 E-value=2.8e+02 Score=26.78 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCCCeEEcCCceE-EEEcccchhhhhCCCCCCEE
Q psy6995 260 GQLGFHVQPDGLV-TEVEHMGLAYQEGLKQGCRL 292 (342)
Q Consensus 260 gqLGFhV~~EG~V-t~VE~~g~Ae~AGLR~G~RL 292 (342)
|.+...++..|++ ..|-.+++|+.-||++||+|
T Consensus 223 Ge~~~l~~S~G~LEiAvn~G~Aa~~lgl~~Gd~V 256 (258)
T PF01887_consen 223 GELLALFNSSGYLEIAVNQGSAAELLGLKPGDRV 256 (258)
T ss_dssp TSEEEEETTTSEEEEEETTB-HHHHHT--TTSEE
T ss_pred CCEEEEECCCCCEEEEEeCcCHHHHcCCCCCCEE
Confidence 5566666555633 34667899999999999998
No 82
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=31.29 E-value=1.3e+02 Score=26.05 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=32.6
Q ss_pred eeeeeeeccceEEEEEccCCcEEEeeeccceeeeccc-CCcEEEE
Q psy6995 168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATS-TNSLRLY 211 (342)
Q Consensus 168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s-~~~LkIy 211 (342)
..+.|-||.+.|-++++.+++++.+.+=+.|. +... ...+++|
T Consensus 41 ~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~IS-f~~~D~~d~~~F 84 (127)
T cd01274 41 PRVTLDLTCNGVKFIDETFKTLIDGHGIYNIR-CVCQDREDLNFF 84 (127)
T ss_pred CEEEEEEeCCeEEEEECCCCeEEEEeeeeEEE-EEecCCCCceEE
Confidence 57999999999999999999999887766655 4332 3344444
No 83
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=30.88 E-value=2.1e+02 Score=24.30 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=42.8
Q ss_pred EEEEEeccC--C--CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecCc
Q psy6995 154 CWQVSLEDS--K--TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGE 216 (342)
Q Consensus 154 ~W~V~v~D~--s--~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rGE 216 (342)
.|+|.+..- + ....-+|.|.+.++.|.|++..++..+...|-..|=-|-.++ -..+|+-|.
T Consensus 3 ~~~v~v~~~~~~~~~~~~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~--~~FsfEaGR 67 (104)
T cd00824 3 VWPVVFRVEGLERCGNELGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDS--NLFSFEAGR 67 (104)
T ss_pred cceEEEEEEeccccCCCceeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCC--CEEEEEccC
Confidence 577766421 1 122348999999999999999999988888888877765554 334455443
No 84
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=30.08 E-value=85 Score=30.89 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=56.3
Q ss_pred CcEEEeeeccce-eeecccCCcEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeE
Q psy6995 187 RDLVFVAPAKSV-LGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFH 265 (342)
Q Consensus 187 ~~VVFncpc~dV-IGWt~s~~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFh 265 (342)
.+|+|.++.-+- ++|-..+..+||||-.-..=-....- .++ ...++ -....+..|.-|+|+=..+.-=|.
T Consensus 33 ~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~-----~~~---~~~~~-~~~~r~~~R~YTiR~~d~~~~e~~ 103 (265)
T COG2375 33 VRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPV-----LEE---RGAVP-PGAQRPPQRTYTIRAVDAAAGELD 103 (265)
T ss_pred EEEEEecccccccccccCCCceeEEEecCccCCCCCCcc-----ccc---ccccC-ccccCCCcccceeeeecccccEEE
Confidence 467787775554 57777788999998542210000000 000 00000 112334567777875444444455
Q ss_pred EcCCceEEE-EcccchhhhhCCCCCCEE-eeccccc
Q psy6995 266 VQPDGLVTE-VEHMGLAYQEGLKQGCRL-ICKVAVS 299 (342)
Q Consensus 266 V~~EG~Vt~-VE~~g~Ae~AGLR~G~RL-Icg~sV~ 299 (342)
|+ ||-+ ...=+..|..+.|+||.| |+|-...
T Consensus 104 vD---fVlH~~~gpas~WA~~a~~GD~l~i~GP~g~ 136 (265)
T COG2375 104 VD---FVLHGEGGPASRWARTAQPGDTLTIMGPRGS 136 (265)
T ss_pred EE---EEEcCCCCcchhhHhhCCCCCEEEEeCCCCC
Confidence 54 5555 333367799999999999 8765554
No 85
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=25.30 E-value=4e+02 Score=23.28 Aligned_cols=64 Identities=14% Similarity=0.291 Sum_probs=45.2
Q ss_pred eeeccceEEEEEcc----CCcEEEeeeccceeeecccCC-------cEEEEeecCc-eEEEEecCCCCCChhhHHHHHHh
Q psy6995 172 LAISTDSVVLVEEQ----SRDLVFVAPAKSVLGWATSTN-------SLRLYHHQGE-VTRIHMREGGGGDRDELMEVVVR 239 (342)
Q Consensus 172 LGIS~e~lVLIe~~----s~~VVFncpc~dVIGWt~s~~-------~LkIyY~rGE-~i~l~~~e~~~~~~edl~EIV~R 239 (342)
..+-+--|+++|.. .|.-+.++|.++|.-|+..+. -|+||+.-+. .+.+..... .|+.+|-+-
T Consensus 44 ~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~-----~di~~i~k~ 118 (124)
T PF08000_consen 44 IVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKK-----TDIYEIYKA 118 (124)
T ss_dssp EEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTT-----SHHHHHHHH
T ss_pred EEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCC-----CCHHHHHHH
Confidence 34555666777744 566788999999999988755 3999997655 566666665 666666544
Q ss_pred h
Q psy6995 240 L 240 (342)
Q Consensus 240 L 240 (342)
|
T Consensus 119 L 119 (124)
T PF08000_consen 119 L 119 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=25.19 E-value=98 Score=28.99 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=43.3
Q ss_pred hhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCCceEEEEccc-----chhhhhCCCCCCEE-----eecccccC
Q psy6995 231 DELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHM-----GLAYQEGLKQGCRL-----ICKVAVST 300 (342)
Q Consensus 231 edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~EG~Vt~VE~~-----g~Ae~AGLR~G~RL-----Icg~sV~~ 300 (342)
++-.++++.|+-. |++..| .. .++|-.+.+|-..+++|. |.|.+++-..+.-. |.|..|..
T Consensus 52 ~~~~~l~~~L~~~--G~~ite---~~----~~~~l~~~~g~llDlHP~~f~~dg~~~q~~p~g~~p~~~~G~I~gr~V~C 122 (174)
T PF10706_consen 52 EDQAELRALLKEL--GYRITE---TT----DYGFLADDDGRLLDLHPLVFNDDGSAVQGSPYGSCPFSAEGTIGGRPVRC 122 (174)
T ss_dssp GGHHHHHHHHHHT--T-EEEE---EE----TEEEEEETTTEEEEEEEEEE-TTS-EEEEETTSSEEEE-EEEETTEEEEE
T ss_pred chhHHHHHHHHHC--CCEEEE---ec----cccEEEcCCCCEEEeEEEEECCCCCeeccCCCCCCcccceeeECCEEECC
Confidence 4445677777765 775444 22 388988888877777765 44555554433333 99999999
Q ss_pred CCHHHH
Q psy6995 301 LSHDQM 306 (342)
Q Consensus 301 lsHeq~ 306 (342)
+|-||+
T Consensus 123 iS~Ea~ 128 (174)
T PF10706_consen 123 ISAEAQ 128 (174)
T ss_dssp E-HHHH
T ss_pred CCHHHH
Confidence 999987
No 87
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=24.76 E-value=98 Score=30.27 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=20.3
Q ss_pred cEEEeeeccceeeeccc-CCcEEEEeecCc-eEEEEecC
Q psy6995 188 DLVFVAPAKSVLGWATS-TNSLRLYHHQGE-VTRIHMRE 224 (342)
Q Consensus 188 ~VVFncpc~dVIGWt~s-~~~LkIyY~rGE-~i~l~~~e 224 (342)
.|||-| ||... +..+.|||+-+| +|.+...+
T Consensus 270 nVVF~~------g~~~~~~~~~~iyYG~AD~~igvA~~~ 302 (312)
T PF04041_consen 270 NVVFPC------GGLVDDDGRLLIYYGAADTRIGVATAP 302 (312)
T ss_dssp TBEEEE------EEEEEETTEEEEEEEETTTEEEEEEEE
T ss_pred CEEEEC------CCEEccCCEEEEEEeecceeEEEEEEE
Confidence 477755 33333 448999999999 55555443
No 88
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=23.82 E-value=76 Score=29.65 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=26.7
Q ss_pred CCCeEEcCCc---eEEEEcccchhhhhCCCCCCEE
Q psy6995 261 QLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL 292 (342)
Q Consensus 261 qLGFhV~~EG---~Vt~VE~~g~Ae~AGLR~G~RL 292 (342)
..|..+..|| +|-.|+-+++|+++|+-.|..|
T Consensus 112 ~~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I 146 (183)
T PF11874_consen 112 AAGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEI 146 (183)
T ss_pred hCCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEE
Confidence 4566665554 8999999999999999999988
No 89
>COG1912 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=2.4e+02 Score=28.14 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEcccchhhhhCCCCCCEE-ee
Q psy6995 274 EVEHMGLAYQEGLKQGCRL-IC 294 (342)
Q Consensus 274 ~VE~~g~Ae~AGLR~G~RL-Ic 294 (342)
.|-++.+|++-|++.||+| |+
T Consensus 245 aVn~Gsaa~~l~v~~gd~i~i~ 266 (268)
T COG1912 245 AVNMGSAAEKLGVKEGDEIEIE 266 (268)
T ss_pred EEecCCHHHHhCCCCCCeEEEE
Confidence 3567899999999999999 65
No 90
>PRK00969 hypothetical protein; Provisional
Probab=22.36 E-value=6.1e+02 Score=27.47 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCcccceeccCeeeeccCcccccCCCCCCccccceeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeec
Q psy6995 116 DNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPA 195 (342)
Q Consensus 116 d~~~~~~~~~~p~~sl~~KkKEr~kpr~~~e~~s~GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc 195 (342)
|.+|.+.-+-|.||+..+-+.++. |.-..+...+||++ |+-...+.|. |.|-++++. .-+.
T Consensus 227 ~G~f~Vd~~tstfI~d~~L~g~~~-p~En~~~R~~GtVT--VRt~G~g~G~-------------vYIyredr~---ss~s 287 (508)
T PRK00969 227 DGTFEVDFETSTFIADDRLQGLKI-PEENFEPRRRGTVT--VRTAGVGVGK-------------VYIYREDRP---SSLS 287 (508)
T ss_pred CCeEEEeeeecceEeeccccCccC-CccccCccccceEE--EEeeccCcee-------------EEEECCCCC---CCcc
Confidence 788999999999999988776653 44666668899976 3443333332 344455544 6678
Q ss_pred cceeeecccCCcEEEEeecCceEEEEecC
Q psy6995 196 KSVLGWATSTNSLRLYHHQGEVTRIHMRE 224 (342)
Q Consensus 196 ~dVIGWt~s~~~LkIyY~rGE~i~l~~~e 224 (342)
|+|+|-.....-|-=|=..||.|++.+.-
T Consensus 288 HtvVG~V~~GiELi~~a~~Gd~itv~t~P 316 (508)
T PRK00969 288 HTVVGRVTHGIELIDFAKEGDRITVKTVP 316 (508)
T ss_pred ceeEEEEecceeeeecccCCCEEEEEeCc
Confidence 99999987666666678899999997654
No 91
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=21.80 E-value=2.4e+02 Score=19.77 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=22.1
Q ss_pred ceeeEEEEEeccC--CCCeeeeeeeeeccceEEEEEccCCcEEE
Q psy6995 150 KGAICWQVSLEDS--KTGSLMHCVLAISTDSVVLVEEQSRDLVF 191 (342)
Q Consensus 150 ~GAl~W~V~v~D~--s~~~~i~ClLGIS~e~lVLIe~~s~~VVF 191 (342)
.|.++|.|.+.+. ..+.. +-|.||..||+|+-
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~----------~~v~VDa~tG~Il~ 62 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGE----------YEVYVDAYTGEILS 62 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEE----------EEEEEETTT--EEE
T ss_pred CCcEEEEEEEEEEecCCCCE----------EEEEEECCCCeEEE
Confidence 7889999998751 22322 67889999999875
No 92
>PRK03760 hypothetical protein; Provisional
Probab=21.05 E-value=68 Score=27.50 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=17.8
Q ss_pred eEEEEcccchhhhhCCCCCCEE-ee
Q psy6995 271 LVTEVEHMGLAYQEGLKQGCRL-IC 294 (342)
Q Consensus 271 ~Vt~VE~~g~Ae~AGLR~G~RL-Ic 294 (342)
.|-++ +.|.+++.|+++||+| +.
T Consensus 92 ~VLEl-~aG~~~~~gi~~Gd~v~~~ 115 (117)
T PRK03760 92 YIIEG-PVGKIRVLKVEVGDEIEWI 115 (117)
T ss_pred EEEEe-CCChHHHcCCCCCCEEEEe
Confidence 44444 4688999999999999 54
No 93
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=20.89 E-value=35 Score=25.26 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=6.4
Q ss_pred ccccccCCCCc
Q psy6995 20 NWLGMDDNLGP 30 (342)
Q Consensus 20 N~fG~DE~LGP 30 (342)
-|.|+||++|=
T Consensus 13 tFlGvDE~FGm 23 (42)
T PF14563_consen 13 TFLGVDEDFGM 23 (42)
T ss_dssp EEEEE-TT--E
T ss_pred eEEeeccccce
Confidence 58999998883
No 94
>PRK01002 nickel responsive regulator; Provisional
Probab=20.62 E-value=2.6e+02 Score=24.65 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCC
Q psy6995 208 LRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNG 258 (342)
Q Consensus 208 LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~ 258 (342)
+-+.+++.-|+.+-+..+ +.++|+++..+|... +|.....+++...+
T Consensus 90 ~Hvhld~~~ClEvivv~G---~~~~I~~l~~kL~~l-kGV~~~kl~~~~~~ 136 (141)
T PRK01002 90 LHIHLDHDHCLEVIVVRG---DAKEIRELTEKLMAL-KGVKHVKLTTMVPG 136 (141)
T ss_pred eeeecCCCcEEEEEEEEc---CHHHHHHHHHHHhCc-CCeeEEEEEEecCC
Confidence 456667777999888886 889999999999955 79988888876544
No 95
>KOG1738|consensus
Probab=20.01 E-value=1.4e+02 Score=32.96 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=50.1
Q ss_pred CCCCeEEc--CCc--eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995 260 GQLGFHVQ--PDG--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320 (342)
Q Consensus 260 gqLGFhV~--~EG--~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V 320 (342)
-+||+-++ +|| +|+++-...+|...+ +..||-+ ||++.|+.-.+.-+|.-|+... .|.+++
T Consensus 213 eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~l 281 (638)
T KOG1738|consen 213 EGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTL 281 (638)
T ss_pred cCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeee
Confidence 57888774 456 899999999998765 6889999 9999999999999999999554 444443
Done!