RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6995
(342 letters)
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 75.6 bits (186), Expect = 2e-17
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 239 RLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKV 296
T G+ L + + QLGF VQ +G++ + G+A + G++ G R+ I
Sbjct: 3 HHHLETMGNVTTVLIRRPDLRYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQ 61
Query: 297 AVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
+V H+++V +L + + + +PA
Sbjct: 62 SVVATPHEKIVHILSNAVGEIHMKTMPA 89
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 75.0 bits (185), Expect = 2e-17
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 252 LTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDL 309
+T+ ++ G +GF + +G +T + A + GL + I V L Q+ D+
Sbjct: 8 ITMHKDSTGHVGFIFK-NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 66
Query: 310 LKTS-SLVTVTVIPA 323
L TS ++VT+T++PA
Sbjct: 67 LSTSGTVVTITIMPA 81
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 46.5 bits (111), Expect = 4e-07
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 243 ATPGSPAQE--LTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKV 296
+ GS + + ++++ G GF V D LV V G A + G+K+G R+ +
Sbjct: 1 GSSGSSGVQRCVIIQKDQHG-FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGT 59
Query: 297 AVSTLSHDQMVDLLKTSSLVTVTVIP 322
V+ SH ++V L+K+ + V +T++
Sbjct: 60 MVTNSSHLEVVKLIKSGAYVALTLLG 85
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 49.2 bits (116), Expect = 1e-06
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 235 EVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL-- 292
+ V+L + L + + QLGF VQ +G++ + G+A + G++ G R+
Sbjct: 283 QTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIE 341
Query: 293 ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
I +V +H+++V L S + + +PA
Sbjct: 342 INGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373
Score = 31.9 bits (71), Expect = 0.33
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 254 LKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLS 302
L+++ LG V G ++ + + G A + G L G ++ I ++ L
Sbjct: 210 LEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269
Query: 303 HDQMVDLLKTSSLVTVTVIPALSDGTPRRY 332
++K T + +S
Sbjct: 270 LATCQGIIKGLKNQTQVKLNIVSCPPVTTV 299
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 45.5 bits (108), Expect = 1e-06
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSH 303
E L + GF ++ + L+ +E A + GL G R++ V V H
Sbjct: 4 ESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEH 63
Query: 304 DQMVDLLKTS-SLVTVTVIPALSD 326
Q+V+L++ S + VT+ V+ S
Sbjct: 64 AQVVELVRKSGNSVTLLVLDGDSY 87
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 45.1 bits (107), Expect = 2e-06
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KV 296
+ GS + + +K+ G GF++ Q ++ ++E A GLK ++
Sbjct: 2 SSGSSGRVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 60
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIPALSD 326
+V L HD +V++++ T+ V+ ++
Sbjct: 61 SVEALDHDGVVEMIRKGGDQTTLLVLDKEAE 91
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 44.8 bits (106), Expect = 3e-06
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSH 303
E L + GF ++ + L+ +E A + GL G R++ V V H
Sbjct: 16 ECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEH 75
Query: 304 DQMVDLLKTS-SLVTVTVIPALSD 326
Q+V+L++ S + VT+ V+ S
Sbjct: 76 AQVVELVRKSGNSVTLLVLDGDSY 99
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 44.3 bits (105), Expect = 3e-06
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 243 ATPGSPAQE----LTLKRNGLGQLGFHVQ---PDGL---VTEVEHMGLAYQEGLKQGCRL 292
+ GS + + ++++ G+LGF V+ GL V++VE A + GL G ++
Sbjct: 1 GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKI 60
Query: 293 --ICKVAVSTLSHDQMVDLLKTSSLVTVTV 320
+ +++ + + V +L +SS + + V
Sbjct: 61 TEVNGLSLESTTMGSAVKVLTSSSRLHMMV 90
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 43.8 bits (104), Expect = 4e-06
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 246 GSPAQE--LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KV 296
GSP Q + +K+ G GF++ Q ++ ++E A GLK ++
Sbjct: 1 GSPHQPRVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 59
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIPALSD 326
+V L HD +V++++ T+ V+ +
Sbjct: 60 SVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 43.6 bits (103), Expect = 7e-06
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 245 PGSPAQELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAV 298
G + + +++ LG V+ + +++ + G A + G L +G + I + +
Sbjct: 22 GGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Query: 299 STLSHDQMVDLLKTSS-LVTVTVIPA 323
+++ DLL +T +IP+
Sbjct: 82 RGKDVNEVFDLLSDMHGTLTFVLIPS 107
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 44.4 bits (105), Expect = 8e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 251 ELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
E+ L ++ G++G ++ V V+ A GL+ G ++ I + S D+
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66
Query: 306 MVDLLKTSSLVTVTVI 321
+LK + +T+
Sbjct: 67 AHKVLKQAFGEKITMT 82
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 42.3 bits (100), Expect = 2e-05
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 253 TLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
TLK+ QLGF++ Q +++V A++ GL++G ++ + V + H
Sbjct: 20 TLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHS 79
Query: 305 QMVDLLKTSSLVTVTV 320
+ V++LKT+ +++ V
Sbjct: 80 KAVEILKTAREISMRV 95
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 43.6 bits (103), Expect = 2e-05
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 245 PGSPAQE--LTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEG-LKQGCRL--I 293
PGS + L + LG V V+ + G+A + L G + +
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 294 CKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSDGTPRRYADLKMWRSVV 342
+ ++ HD+++ LLK V + V L + + + + V
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVT 111
Score = 32.8 bits (75), Expect = 0.088
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 250 QELTLKRNGLGQLGFHV------QPDG----LVTEVEHMGLAYQEG-LKQGCRLIC--KV 296
E+TL + G GF + + ++T V G A +EG +K G RL+ +
Sbjct: 108 VEVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGI 166
Query: 297 AVSTLSHDQMVDLLKTSS-LVTVTV 320
+ +H + + +LK T+ +
Sbjct: 167 RLLGTTHAEAMSILKQCGQEATLLI 191
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 250 QELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
+++T+ R G GF + D V V+ G A + GL+Q + + + V +
Sbjct: 5 RQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE 63
Query: 306 MVDLLKTS-SLVTVTVIPALSDGTPR 330
+ +++ S + + V + P
Sbjct: 64 LAHEIRSCPSEIILLVWRMVPQVKPG 89
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 41.6 bits (98), Expect = 3e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 252 LTLKRNGLGQLGFHVQPDGL-------------VTEVEHMGLAYQEGLKQGCRLIC--KV 296
LTL++ GF +Q GL V V A GL G + +
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGL 67
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIP 322
V + H ++VD++K S +++ + +
Sbjct: 68 NVEGIRHREIVDIIKASGNVLRLETLY 94
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 41.3 bits (97), Expect = 3e-05
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 241 RAATPGSPAQELTLKRNGLGQLGFHVQPDG-------------LVTEVEHMGLAYQEGLK 287
+ S + +T+++ GF +Q L+ +++ A+ GL+
Sbjct: 8 LSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQ 67
Query: 288 QGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVI 321
G L I V+ ++ Q+VDL+++S +L+T+ +
Sbjct: 68 AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 41.3 bits (97), Expect = 4e-05
Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 239 RLRAATPGSPAQE---LTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEGLKQG 289
+ +PG+ + + + G LG + +P ++ V+ L+ + GL+ G
Sbjct: 3 SGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIG 62
Query: 290 CRLI--CKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
+++ V S L H + V++LK+S +T++++
Sbjct: 63 DQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 96
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 41.6 bits (97), Expect = 4e-05
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL-VTVTVIPALSDG 327
V V+ GLA ++GLK G + I A L+ + D L SL + V P L +G
Sbjct: 47 YVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEG 106
Query: 328 TP 329
Sbjct: 107 VE 108
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 40.3 bits (95), Expect = 5e-05
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHD 304
L + G GFH+ P + EV+ G A GL+ +I V V ++
Sbjct: 7 CRLAKGENG-YGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYE 65
Query: 305 QMVDLLKTS-SLVTVTVIP 322
++VD +++S VT+ V
Sbjct: 66 KVVDRIQSSGKNVTLLVCG 84
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 40.9 bits (96), Expect = 5e-05
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 243 ATPGSPAQ---------ELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCR 291
+ GS + ++T++R G GF + D V V+ G A + GL+Q
Sbjct: 1 GSSGSSGEGDPENGEKLQITIRRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDT 59
Query: 292 L--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
+ + + V ++ +++ + ++
Sbjct: 60 VLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 39.5 bits (93), Expect = 8e-05
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 252 LTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV 307
+ + R G GF + +++ V A GL+ G ++ + ++ V SH+ +V
Sbjct: 6 VEVARGRAG-YGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVV 64
Query: 308 DLLKTS-SLVTVTVIP 322
L+ ++ + +
Sbjct: 65 KLIGKCSGVLHMVIAE 80
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling
protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB:
3brw_A*
Length = 341
Score = 42.9 bits (100), Expect = 1e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKT 63
EH N+ +D LG + SLK + + Q+ R L +
Sbjct: 24 EHFNYYSLDTALGHLVFSLKYDVI----GDQEHLRLLLRTKCRTYHD 66
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 40.6 bits (95), Expect = 1e-04
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHVQ------PDGLVTEVEHMGLAYQEGLKQGCRLIC--K 295
G +++ L LG ++ +T V+ A GLK G +++
Sbjct: 16 LQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNG 75
Query: 296 VAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSV 341
+ + HD+ V LLK+S + +TV R D W +
Sbjct: 76 RSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKWIAS 121
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 40.2 bits (94), Expect = 1e-04
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 242 AATPGSPAQELTLKRN-----GLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL-- 292
+ + GS ++ + R G LGF ++ + V ++ A G K+G +
Sbjct: 3 SGSSGSASKRWSPPRGIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVS 62
Query: 293 ICKVAVSTLSHDQMVDLLKTS-----SLVTVTVIPALSDGTPR 330
I V L+ +++ LLK+ + V+++ + S +
Sbjct: 63 IQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNK 105
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 247 SPAQELTLKRNGLGQLGFHVQ-------------PDGLVTEVEHMGLAYQEGLKQGCRLI 293
S + + +G GF ++ +V VE A + GL+ G +
Sbjct: 1 SMRPPIVIHSSGKK-YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLIT 59
Query: 294 C--KVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
+V L H +V+LL S + +++
Sbjct: 60 HINGESVLGLVHMDVVELLLKSGNKISLRTTA 91
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC-- 294
++ + L + G GF ++ +T++ G+A + G+ LI
Sbjct: 2 SSGSSGQPRLCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVN 60
Query: 295 KVAVSTLSHDQMVDLLKTS-SLVTVTVI 321
V SH+++V+ +K S S V ++
Sbjct: 61 GENVEDASHEEVVEKVKKSGSRVMFLLV 88
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 41.1 bits (96), Expect = 1e-04
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 241 RAATPGSPAQELTLKRNGLGQLGFHV---QPDGL---VTEVEHMGLAYQEGLKQGCRLIC 294
+E+ L R LG V G ++ + G A GL+ G ++
Sbjct: 77 LTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVR 136
Query: 295 --KVAVSTLSHDQMVDLLKTSSLVTVTV 320
++S+ +H+++++L++T V++ V
Sbjct: 137 INGYSISSCTHEEVINLIRTEKTVSIKV 164
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 253 TLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQ 305
T+K+ G GF++ +P + V+ A GL+ R++ V + H
Sbjct: 14 TMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72
Query: 306 MVDLLKTS-SLVTVTVIPALSD 326
+V ++ + V+ +D
Sbjct: 73 VVSAIRAGGDETKLLVVDRETD 94
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHD 304
L++ G GF++ +P + V+ A + GL+ RLI V L H
Sbjct: 8 CHLRKGPQG-YGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHA 66
Query: 305 QMVDLLKTS-SLVTVTVIPALSD 326
++V +K + V+ +
Sbjct: 67 EVVASIKAREDEARLLVVGPSTR 89
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 39.9 bits (93), Expect = 2e-04
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLI--CKVAVSTLSHD 304
T+K+ G GF++ +P + V+ A GL+ R++ V + H
Sbjct: 13 CTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHG 71
Query: 305 QMVDLLKTS-SLVTVTVIPALSDGTPRR 331
+V ++ + V+ +D ++
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETDEFFKK 99
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 38.9 bits (91), Expect = 2e-04
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 252 LTLKRNGLGQLGFHV--------QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTL 301
L L++ G GF + +P + EV+ A + G++ G RL+ +V L
Sbjct: 7 LHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGL 65
Query: 302 SHDQMVDLLKTS-SLVTVTVIPALSD 326
H++ V ++ S V++TV+ +D
Sbjct: 66 GHEETVSRIQGQGSCVSLTVVDPEAD 91
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 39.5 bits (92), Expect = 3e-04
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 255 KRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKV---AVSTLSHDQMVDLLK 311
R G + V +V+ G A++ GL G R+I KV +V ++ Q++ L++
Sbjct: 48 NRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRII-KVNGESVIGKTYSQVIALIQ 106
Query: 312 TS-SLVTVTVIPALSDGTP 329
S + + ++V+P S +
Sbjct: 107 NSDTTLELSVMPKDSGPSS 125
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 39.0 bits (91), Expect = 3e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 247 SPAQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS 302
S + + LGF ++ + V ++ A G ++G + I V L+
Sbjct: 22 SMPRSIRFTAEEGD-LGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLT 80
Query: 303 HDQMVDLLKTSSLVTVTV 320
+++ LLK+ + +
Sbjct: 81 LSEVMKLLKSFGEDEIEM 98
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 38.4 bits (90), Expect = 3e-04
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 247 SPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAV 298
S + LT+ G GF + + VT+V G A L+ G + I +
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSA 62
Query: 299 STLSHDQMVDLLKTSS 314
+ H + ++ S+
Sbjct: 63 ENMLHAEAQSKIRQSA 78
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 38.5 bits (90), Expect = 3e-04
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 253 TLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSHD 304
L +N LG ++ D +V + G A + G + G L + V +
Sbjct: 9 RLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPE 67
Query: 305 QMVDLLKTSS-LVTVTVIPALSDGTP 329
+++ +L S +T +IP + TP
Sbjct: 68 EIIQILAQSQGAITFKIIPGSKEETP 93
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 38.5 bits (90), Expect = 4e-04
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 242 AATPGSPAQELTLKR-NGLGQLGFHV---QPDGL---VTEVEHMGLAYQEGLKQGCRLIC 294
++ + ++L+R LGF + G+ V+ VE LA +EGL+ G +++
Sbjct: 2 SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILR 61
Query: 295 --KVAVSTLSHDQMVDLLKTSSLVTVTVI 321
+++ ++H + V LK S + ++V
Sbjct: 62 VNDKSLARVTHAEAVKALKGSKKLVLSVY 90
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 38.1 bits (89), Expect = 4e-04
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 245 PGSPAQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
G + + ++ +G ++ + V + H G+ +++G L G + I
Sbjct: 9 SGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTN 68
Query: 298 VSTLSHDQMVDLLKTSS-LVTVTVIPA 323
V+ S DQ+ +K + ++++ VIP
Sbjct: 69 VTNHSVDQLQKAMKETKGMISLKVIPN 95
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 38.7 bits (90), Expect = 4e-04
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 271 LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
++ + GLA G L ++ + VS S DQ+ D++ +S + +TV PA
Sbjct: 68 FISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 124
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 38.0 bits (88), Expect = 5e-04
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 272 VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLV-TVTVIPAL 324
V V+ GLA ++GLK G + I A L+ + D L SL V P L
Sbjct: 39 VNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPEL 94
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 7e-04
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 242 AATPGSPAQELTLKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQGCRL- 292
S + + + LG + + + ++ + + G L G +
Sbjct: 9 TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHIL 68
Query: 293 -ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSDGTPRR 331
I ++ S + LL S V + ++P P R
Sbjct: 69 SIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLR 109
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 37.4 bits (87), Expect = 0.001
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 251 ELTLKRNGLGQLGFHVQ-----PDG--------LVTEVEHMGLAYQEG-LKQGCRLIC-- 294
++ + R GF + P+ + + A + LK G R++
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVN 72
Query: 295 KVAVSTLSHDQMVDLLKTS-SLVTVTVIPALSDGTPR 330
++ + H +V L+K + VT+ +IP +P
Sbjct: 73 GQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNSPS 109
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 37.5 bits (87), Expect = 0.001
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 243 ATPGSPAQ-ELTLKRNGLGQLGFHVQ------------------PDGLVTEVEHMGLAYQ 283
+ + + L++ GF ++ + V+ G+A++
Sbjct: 1 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR 60
Query: 284 EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
GL+ G L + V + H Q+V++++ + + V V+
Sbjct: 61 AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 37.0 bits (86), Expect = 0.001
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 246 GSPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVA 297
GS + G GF + L +T + A L G + I
Sbjct: 1 GSSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFG 60
Query: 298 VSTLSHDQMVDLLKTSS 314
+++H D +K +S
Sbjct: 61 TESMTHADAQDRIKAAS 77
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 38.6 bits (89), Expect = 0.001
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLI--CKVAVSTLSHD 304
T+K+ G GF++ +P + V+ A GL+ R++ V + H
Sbjct: 13 CTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHG 71
Query: 305 QMVDLLKTS-SLVTVTVIPALSDGTPRR 331
+V ++ + V+ +D ++
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETDEFFKK 99
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 36.5 bits (85), Expect = 0.001
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 252 LTLKRNGLGQLGFHVQ-----PDGLVTEVEHMGLAYQEGLKQGCRLICKV---AVSTLSH 303
L++ G GFH+ + VE A + GL G RL+ +V V +H
Sbjct: 7 CCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLV-EVNGENVEKETH 64
Query: 304 DQMVDLLKTS-SLVTVTVIPALSD 326
Q+V ++ + + V + V+ +D
Sbjct: 65 QQVVSRIRAALNAVRLLVVDPETD 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 242 AATPGSPAQELTLKRNGLGQ-LGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRL--I 293
+ TP ++TL ++ + GF V + V + G GLK RL +
Sbjct: 1 SPTPVEL-HKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQV 59
Query: 294 CKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
V +V L+ S + + + +
Sbjct: 60 NHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 37.8 bits (88), Expect = 0.002
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 251 ELTLKRNGLGQLGFHVQ--------PDG--LVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
E+ L + + G +Q L++ +E A + G L+ G R+ I +
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 68
Query: 298 VSTLSHDQMVDLLKTSSL-VTVTV 320
+ ++ LL+ SS+ VT+
Sbjct: 69 TEDSTFEEANQLLRDSSITSKVTL 92
Score = 35.9 bits (83), Expect = 0.009
Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 207 SLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHV 266
+ E ++ +R+ + L + P S + L + +LG +
Sbjct: 68 PTEDSTFE-EANQL-LRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITI 125
Query: 267 -------QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS- 314
D L +++++ +A++ G L+ G +L I + + + S + V +L+
Sbjct: 126 SSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED 185
Query: 315 LVTVTV 320
LV + +
Sbjct: 186 LVKLKI 191
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 246 GSPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVA 297
GS ++ G GF +Q L ++ ++ G A Q ++ G + I ++
Sbjct: 1 GSSGSSGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGIS 60
Query: 298 VSTLSHDQMVDLLKTSS-LVTVTV 320
++H + + +K + + +T+
Sbjct: 61 AQGMTHLEAQNKIKACTGSLNMTL 84
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 36.2 bits (84), Expect = 0.002
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 272 VTEVEHMGLAYQEGLKQGCRLICKV---AVSTLSHDQMVDLLKTS-SLVTVTVIPALSD 326
V+ V G A + G+++G R++ +V V +H Q+VDL++ + +TV+ S+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRIL-EVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 36.5 bits (84), Expect = 0.003
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 241 RAATPGSPAQE--LTLKRNGLGQLGFHVQ------------------PDGLVTEVEHMGL 280
R + +E + L++ GF ++ + V+ G+
Sbjct: 18 RGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGV 77
Query: 281 AYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
A++ GL+ G L + V + H Q+V++++ + + V V+
Sbjct: 78 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 122
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 35.3 bits (82), Expect = 0.004
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 246 GSPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVA 297
GS ++ G GF + L ++ V A L G + I +
Sbjct: 4 GSSGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGES 63
Query: 298 VSTLSHDQMVDLLKTSS-LVTVTVIPALSDG 327
++H + + +K +T++V S G
Sbjct: 64 TELMTHLEAQNRIKGCHDHLTLSVSSGPSSG 94
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 34.6 bits (80), Expect = 0.006
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 250 QELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301
++ G GF +Q L ++ ++ G A Q ++ G + I + +
Sbjct: 3 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGM 62
Query: 302 SHDQMVDLLKTSS 314
+H + + +K +
Sbjct: 63 THLEAQNKIKGCT 75
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 34.7 bits (80), Expect = 0.006
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 252 LTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQM 306
+ GF ++ D V VE A L+ +I S +
Sbjct: 9 INQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEW 68
Query: 307 VDLLKTS 313
+ + +
Sbjct: 69 EEAMAKA 75
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 36.4 bits (84), Expect = 0.007
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 237 VVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGL---VTEVEHMGLAYQEG-LKQGCRL 292
+ RA P + L + +LG + P+ + + ++ + L++G +
Sbjct: 102 LTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDII 161
Query: 293 IC--KVAVSTLSHDQMVDLLKTSS-LVTVTV 320
A+ L L K ++ V++ V
Sbjct: 162 TKFNGDALEGLPFQVCYALFKGANGKVSMEV 192
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 34.6 bits (80), Expect = 0.007
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 240 LRAATPGSPAQELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRL 292
++ + P +++ L + LG + + ++E+ A + G L G +
Sbjct: 1 MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 293 --ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
+ V + H + V +L + V+
Sbjct: 61 LAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 93
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 34.7 bits (80), Expect = 0.007
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEG-LKQGCRL-- 292
+ G +E+ L++ LG + G ++ + H G A + G L G RL
Sbjct: 5 SSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTA 64
Query: 293 ICKVAVSTLSHDQMVDLLKTSS---LVTVTVIPA 323
I ++ L ++ + VT++++
Sbjct: 65 INGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 34.2 bits (79), Expect = 0.008
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 250 QELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301
+ G GF +Q L ++ + G A Q G+ G + I +L
Sbjct: 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62
Query: 302 SHDQMVDLLKTSS-LVTVTV 320
+H + + ++ +++ +
Sbjct: 63 THIEAQNKIRACGERLSLGL 82
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 34.2 bits (79), Expect = 0.008
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 247 SPAQELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRLIC--KVA 297
S Q++ L R G GF + + + + + +G A +G L+ G LI
Sbjct: 1 SMEQDIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTP 59
Query: 298 VSTLSHDQMVDLLKTSSL---VTVTV 320
V SH +V L++ ++ V +TV
Sbjct: 60 VIGKSHQLVVQLMQQAAKQGHVNLTV 85
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 34.1 bits (79), Expect = 0.008
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 246 GSPAQELT--LKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRLIC-- 294
GS L + G LGF++ Q + ++ V G+A + G LK+G +L+
Sbjct: 1 GSSGSSGVVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVN 59
Query: 295 KVAVSTLSHDQMVDLLKTS-SLVTVTV 320
V+V H++ V+LLK + V + V
Sbjct: 60 GVSVEGEQHEKAVELLKAAQGSVKLVV 86
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 34.7 bits (80), Expect = 0.010
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 20/99 (20%)
Query: 242 AATPGSPAQEL-----TLKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQ 288
AAT SP Q L+ G L + P G +V+ V G A + G + +
Sbjct: 5 AATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVK 64
Query: 289 GCRL--ICKVAVSTLSHDQMVDLLK-----TSSLVTVTV 320
G + I V+ + + L+ + + V
Sbjct: 65 GDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVV 103
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 33.8 bits (78), Expect = 0.010
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 249 AQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVST 300
+ LT+ G GF + + VT+V G A L+ G + I +
Sbjct: 1 SMALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEG 60
Query: 301 LSHDQMVDLLKTSS 314
+ H + ++ S
Sbjct: 61 MLHAEAQSKIRQSP 74
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 33.9 bits (78), Expect = 0.011
Identities = 13/84 (15%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSH 303
+ ++N +G ++ + +V + H G+ +++G L G + ++V+ +
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 304 DQMVDLLKTSS-LVTVTVIPALSD 326
+Q+ +L+ +T ++P+ +
Sbjct: 64 EQLQKMLREMRGSITFKIVPSYRE 87
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 34.3 bits (79), Expect = 0.012
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV-------QPDGL-VTEVEHMGLAYQEG-LKQGCRLIC 294
PA + G LG + + + + EV G Y++G LK G +L+
Sbjct: 10 LDRDPAFRVITVTKETG-LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 295 --KVAVSTLSHDQMVDLLKTSSL 315
K ++ +S ++ ++ + L
Sbjct: 69 INKESMIGVSFEEAKSIITRAKL 91
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 33.8 bits (78), Expect = 0.013
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV----QPDG--LVTEVEHMGLAYQEG-LKQGCRL--IC 294
+ G+ + LKR G LG + +P +++ + GLA + G + G R+ I
Sbjct: 1 SSGAIIYTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59
Query: 295 KVAVSTLSHDQMVDLLK-TSSLVTVTVIP 322
++ + + LL+ VT+ +
Sbjct: 60 SSSLKGKPLSEAIHLLQMAGETVTLKIKK 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.013
Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 108/305 (35%)
Query: 41 EYTQESQQMYR-YRLLIRTSELKTGKIGRNLSKSGQNTAKRSNHLNQTYERSFSPPRSSN 99
+Y +E + +Y+ Y +L+ +L + S + L++
Sbjct: 168 DYFEELRDLYQTYHVLVG--DL--------IKFSAE-------TLSE-----LIRTTLDA 205
Query: 100 SSGYGTGSSSRSFMGVDNRFPVS--LEVSPATLFSSKKKERWRPRIIPDTL-QKGAICWQ 156
+ G + ++ + P L P + P I + Q +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----------PLI---GVIQ--LAHYV 250
Query: 157 VSLE--DSKTGSLMHCVLAISTDSVVLVEEQSRDLV---FVAPAKSVLGWAT----STNS 207
V+ + G L + + S+ LV +A S W + +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATG--------HSQGLVTAVAIAETDS---WESFFVSVRKA 299
Query: 208 LRLYHHQGEVTRIHMR---------------EGGGG-----------DRDELMEVVVRLR 241
+ + G R + E G ++++ + V +
Sbjct: 300 ITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLA-YQEGLKQGCRLICKVAVST 300
+ P E++L NG LV ++ + L + K +
Sbjct: 358 SHLPAGKQVEISL-VNG---------AKNLV-------VSGPPQSLYGLNLTLRKAKAPS 400
Query: 301 LSHDQ 305
DQ
Sbjct: 401 -GLDQ 404
Score = 34.6 bits (79), Expect = 0.057
Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 88/313 (28%)
Query: 75 QNTAKRSNHLNQ-TYERSFSPPRSSNSSGYGTGSSSRSFMGVDNRFPVSLE--------- 124
+ R L+ + E P +S + S + +F L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTAS----FFIASQLQE------QFNKILPEPTEGFAAD 51
Query: 125 ---VSPATL------FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSL----MHCV 171
+PA L + S E P + + + L + + L +H +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 172 LAISTDSVVLVEEQSRDLV---FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGG 228
A ++++L+ A + + +NS ++ GG G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 229 DR----DELMEV-------VVRL--RAATPGSPAQELTLKRNGLGQLGFHV--------- 266
+ +EL ++ V L +A S TL + G ++
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 267 QPDGLVTEVEHMGLAYQE------GLKQGCR--LICKVAVSTLSHDQMVDLLKTSS---- 314
PD L G+ Q + K+ + ++ LK ++
Sbjct: 225 TPDKDY-------LLSIPISCPLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGATGHSQ 275
Query: 315 -LVTVTVIPALSD 326
LVT I A +D
Sbjct: 276 GLVTAVAI-AETD 287
Score = 28.1 bits (62), Expect = 6.0
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 29/139 (20%)
Query: 188 DLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGS 247
D+V P ++ R+ + + + +G E+ + T S
Sbjct: 1663 DIVINNP-VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 248 PAQELTLKRNGLGQLGFHVQPDGLVTEV---EHMGLAYQEGLKQGCR------------L 292
L+ + QP + E E + +GL L
Sbjct: 1722 EKGLLSATQF--------TQPALTLMEKAAFEDLK---SKGLIPADATFAGHSLGEYAAL 1770
Query: 293 ICKVAVSTLSHDQMVDLLK 311
+A +S + +V+++
Sbjct: 1771 AS-LA-DVMSIESLVEVVF 1787
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 35.1 bits (81), Expect = 0.017
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGFHV-----------QPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
E+TL+R G LGF + P +T++ G A Q+G L+ + + +V
Sbjct: 8 EITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 66
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTV 320
V ++H V+ LK S+V + V
Sbjct: 67 DVREVTHSAAVEALKEAGSIVRLYV 91
Score = 30.1 bits (68), Expect = 0.74
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 236 VVVRLRAATPGSPAQELTLKRNGLG--------QLGFHVQPDGLVTEVEHMGLAYQEG-L 286
V+R + +L GLG VT++ G A+++G L
Sbjct: 90 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRL 149
Query: 287 KQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320
+ G ++ + V + + H+ V LK + +V + V
Sbjct: 150 QIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 33.9 bits (78), Expect = 0.018
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 243 ATPGSPAQ---------ELTLKRNGLGQLGF---------HVQPDGL---VTEVEHMGLA 281
+ GS + LT+ R G LG + D ++ V G A
Sbjct: 1 GSSGSSGEPARIEEEELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPA 59
Query: 282 YQEGLKQGCRLIC--KVAVSTLSHDQMVDLLKTS-SLVTVTV 320
+ G++ G +L+ VA+ H + V+ L+ + + V + V
Sbjct: 60 ARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 34.1 bits (78), Expect = 0.018
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 251 ELTLKRNGLGQLGFHVQ----------PDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
E+ L + + G +Q L++ +E A + G L+ G R+ I +
Sbjct: 18 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 77
Query: 298 VSTLSHDQMVDLLKTSSL-VTVTV 320
+ ++ LL+ SS+ VT+
Sbjct: 78 TEDSTFEEANQLLRDSSITSKVTL 101
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 34.0 bits (78), Expect = 0.018
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 239 RLRAATPGSPAQELTLKRNGLGQLGFHV---QPDG-LVTEVEHMGLAYQEGLKQGCRLI- 293
R + + + +++ LG + + G V++V +A+Q GL+ G +L+
Sbjct: 10 RRKDRPYVEEPRHVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLE 68
Query: 294 -CKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
+ + + + Q ++ +T+
Sbjct: 69 FNGINLRSATEQQARLIIGQQCDTITILA 97
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 33.4 bits (77), Expect = 0.020
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 242 AATPGSPAQELT--LKRNGLGQLGFHV----QPDG--LVTEVEHMGLAYQEG-LKQGCRL 292
++ S +EL L+R G GF + +P L+ V MG A ++G L G L
Sbjct: 1 GSSGSSGYKELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDEL 59
Query: 293 IC--KVAVSTLSHDQMVDLLKTSSL---VTVTV 320
+ + V+ +H ++DL+ ++ V +TV
Sbjct: 60 VYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 33.0 bits (76), Expect = 0.025
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGF---------HVQPDGL---VTEVEHMGLAYQEGLKQGCRLI--CKV 296
LT+ R G LG + D ++ V G A + G++ G +L+ V
Sbjct: 6 TLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGV 64
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTV 320
A+ H + V+ L+ + + V + V
Sbjct: 65 ALQGAEHHEAVEALRGAGTAVQMRV 89
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 33.2 bits (76), Expect = 0.027
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 246 GSPAQELT---LKRNGLGQLGFHV-------QPDGLVTEVEHMGLAYQEG-LKQGCRLIC 294
GS T +K++ LG + QP + ++ G A+ G LK G ++
Sbjct: 1 GSSGSSGTLVRVKKSAAT-LGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE 59
Query: 295 --KVAVSTLSHDQMVDLLKTS 313
+ + H + ++ +
Sbjct: 60 VNGLTLRGKEHREAARIIAEA 80
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 32.6 bits (75), Expect = 0.032
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 250 QELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVAVST 300
+ +T+++ G LG + + ++++ A Q L G + + +S+
Sbjct: 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
Query: 301 LSHDQMVDLLK-TSSLVTVTV 320
+HD+ V LK T V + V
Sbjct: 66 ATHDEAVQALKKTGKEVVLEV 86
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 33.2 bits (76), Expect = 0.038
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 237 VVRLRAATPGSPAQELTLKRNGLGQLGFHV----QPDG--LVTEVEHMGLAYQEG-LKQG 289
+ A+ TLK++ +G GF + +PD V V G A Q+G ++ G
Sbjct: 8 LFTRDASQLKGTFLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETG 66
Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTV 320
+ I +V V +H +V L ++ V + +
Sbjct: 67 DVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVL 102
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 33.1 bits (76), Expect = 0.039
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 241 RAATPGSPAQELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQGC 290
+ + +K+ LG + P G + + G+A Q L+ G
Sbjct: 17 NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGD 76
Query: 291 RL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIP 322
R+ IC + ++H Q V+LLK S + + V+
Sbjct: 77 RIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 32.8 bits (75), Expect = 0.042
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVST 300
+ K G G LGF + + V V GLA QEG +++G + I ++
Sbjct: 19 TILHKEEGAG-LGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77
Query: 301 LSHDQMVDLLK-TSSLVTVTVI 321
+H + +L+ ++
Sbjct: 78 TTHHDALAILRQAREPRQAVIV 99
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 32.1 bits (73), Expect = 0.062
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLS 302
+ L + +G LGF V +P +++++ G A Q G ++ G ++ + LS
Sbjct: 4 SVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
Query: 303 HDQMVDLLK-TSSLVTVTVI 321
+D +++L+ +S V +I
Sbjct: 64 YDSALEVLRGIASETHVVLI 83
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 32.5 bits (74), Expect = 0.063
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLS 302
+ L + +G LGF V +P +++++ G A Q G ++ G ++ + LS
Sbjct: 11 SVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 70
Query: 303 HDQMVDLLK-TSSLVTVTVI 321
+D +++L+ +S V +I
Sbjct: 71 YDSALEVLRGIASETHVVLI 90
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 31.8 bits (73), Expect = 0.066
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 245 PGSPAQELTLKRNGLGQLGFHV--------QPDGL-VTEVEHMGLAYQEG-LKQGCRL-- 292
E+ L +N LG V + G+ V V G A +G + +G R+
Sbjct: 2 KPGDIFEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 60
Query: 293 ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ V++ +H Q V+ L+ T +V + +
Sbjct: 61 VNGVSLEGATHKQAVETLRNTGQVVHLLL 89
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 32.0 bits (73), Expect = 0.067
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGL---VTEVEHMGLAYQEG-LKQGCRL--ICKVAVS 299
+TL LG + + + + G +G ++ G L + +
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFE 67
Query: 300 TLSHDQMVDLLKTSSLVTVTV 320
+S+D V +L+ +
Sbjct: 68 NMSNDDAVRVLRDIVHKPGPI 88
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 32.0 bits (73), Expect = 0.073
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDGL---VTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSHD 304
+ L + +LG + P+ + + ++ + L++G + A+ L
Sbjct: 5 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 64
Query: 305 QMVDLLKTSS-LVTVTV 320
L K ++ V++ V
Sbjct: 65 VCYALFKGANGKVSMEV 81
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 32.0 bits (73), Expect = 0.074
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 242 AATPGSPAQELT--LKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQGCR 291
A P P QE+ + + G LG + P ++ EV G A ++G L G +
Sbjct: 9 ATCPIVPGQEMIIEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQ 67
Query: 292 L--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ + V + SH++ + L+ T V + V
Sbjct: 68 ILEVNGVDLRNSSHEEAITALRQTPQKVRLVV 99
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 31.4 bits (72), Expect = 0.074
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLS 302
+ L++ LG + V+++ G+A +G L QG +++ V +
Sbjct: 7 TIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 303 HDQMVDLLKTSS-LVTVTV 320
+ + LLK S VT+ V
Sbjct: 67 QEAVAALLKCSLGTVTLEV 85
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 32.0 bits (73), Expect = 0.086
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 242 AATPGSPAQEL---TLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRL 292
+ PG A+E L + G LGF++ V+ + G A G L++G R+
Sbjct: 6 SGRPGGDAREPRKIILHKGSTG-LGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRI 64
Query: 293 --ICKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
+ V + +H+Q LK + VT+
Sbjct: 65 LSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 31.5 bits (72), Expect = 0.097
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 245 PGSPAQELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
P P + + + R G LGF++ ++ + G A G L++G ++ + V
Sbjct: 9 PREP-RRIVIHRGSTG-LGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGV 66
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTV 320
+ SH+Q LK + VT+
Sbjct: 67 DLRNASHEQAAIALKNAGQTVTIIA 91
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 31.9 bits (73), Expect = 0.098
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 250 QELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
+ +TL+R G LGF + P G V V G A ++G LK+G ++ + +
Sbjct: 27 KSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 298 VSTLSHDQMVDLLK-TSSLVTVTV 320
+ ++H++ V +LK T VT+ V
Sbjct: 86 LEGVTHEEAVAILKRTKGTVTLMV 109
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 31.1 bits (71), Expect = 0.099
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 251 ELTLKRNGLGQLGFHV--QPDGLVTEVEH-MGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
+ + + +G GF + P G V+ + GLK+G + + K V L+H+Q
Sbjct: 6 TVHIVKGPMG-FGFTIADSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQ 64
Query: 306 MVDLLKTSSL---VTVTV 320
+VD+L S VT+ V
Sbjct: 65 VVDMLVESPKGSEVTLLV 82
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 31.6 bits (72), Expect = 0.10
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 243 ATPGSPAQELTLKRNGLGQLGFHV-----QPDGL----------VTEVEHMGLAYQEG-L 286
+ G +EL +++ +LG + G +++V G A ++G L
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 287 KQGCRLI--CKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ G RL+ + ++ L+H + V LL+ +TV V
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 31.1 bits (71), Expect = 0.11
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 251 ELTLKRNGLGQLGFHV----QPDG--LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTL 301
L+++ G GF V +PD + + G A +G ++ G ++ V
Sbjct: 3 HTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 302 SHDQMVDLLKT---SSLVTVTV 320
+H Q+V + ++ + V + +
Sbjct: 62 THAQVVKIFQSIPIGASVDLEL 83
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 31.9 bits (72), Expect = 0.11
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 272 VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
VT V G A GL+ G ++ + ++ ++HDQ L S V ++
Sbjct: 68 VTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 31.1 bits (71), Expect = 0.12
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 251 ELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEG-LKQGCRLICKV---AVSTLSH 303
+ L + +LG + P+ + ++ + L++G + K A+ L
Sbjct: 11 NVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIIT-KFNGDALEGLPF 69
Query: 304 DQMVDLLKTSS-LVTVTV 320
L K ++ V++ V
Sbjct: 70 QVSYALFKGANGKVSMEV 87
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 31.1 bits (71), Expect = 0.12
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 251 ELTLKRNGLGQLGF---------HVQPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
++ L +N G LG ++P G+ V + +G ++ G ++ +
Sbjct: 7 DVELTKNVQG-LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65
Query: 298 VSTLSHDQMVDLLK-TSSLVTVTV 320
+ ++ Q V++L+ T V +T+
Sbjct: 66 LQGFTNQQAVEVLRHTGQTVLLTL 89
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 30.8 bits (70), Expect = 0.12
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMV 307
L R G + V E+ GLA ++G L +G + I +S
Sbjct: 5 LLMKSRANEE-YGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDAR 63
Query: 308 DLLKTSS-LVTVTV 320
L++ S + + V
Sbjct: 64 KLIEKSRGKLQLVV 77
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 31.3 bits (71), Expect = 0.14
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 241 RAATPGSPAQELTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQ--EGLKQGCRL 292
P + +K + G+ GF+V + +V+ V A L +G ++
Sbjct: 10 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQV 69
Query: 293 --ICKVAVSTLSHDQMVDLLKTSS-----LVTVTVIP 322
I ++ +HDQ+V +K S + + V P
Sbjct: 70 VLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 106
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 31.2 bits (71), Expect = 0.14
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 243 ATPGSPAQELTLKRNGLGQLGFHV-----QPDG-----LVTEVEHMGLAYQEG-LKQGCR 291
A + + L ++ G LGF + D ++ + G+A + G L G R
Sbjct: 10 ALWSPEVKIVELVKDCKG-LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDR 68
Query: 292 LIC--KVAVSTLSHDQMVDLLKTSSLVTVT 319
L+ + + S + V++LK V
Sbjct: 69 LVSVNEYCLDNTSLAEAVEILKAVPPGLVH 98
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 31.3 bits (71), Expect = 0.14
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 253 TLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSH 303
L + LG + + ++E+ A + G L G + + V + H
Sbjct: 32 LLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH 91
Query: 304 DQMVDLLK-TSSLVTVTV 320
+ V +L + V
Sbjct: 92 KEAVTILSQQRGEIEFEV 109
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 30.7 bits (70), Expect = 0.15
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 251 ELTLKRNGLGQLGFHV---------QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
E+TL + G GF + + + +T V G A +EG +K G RL + +
Sbjct: 6 EVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 298 VSTLSHDQMVDLLK-TSSLVTVTV 320
+ +H + + +LK + +
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLI 88
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 31.1 bits (71), Expect = 0.16
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGF-------HVQPDG--LVTEVEHMGLAYQEG-LKQGCRLIC--KVAV 298
+ LK+ G LGF + V + G A Q+G LK G RLI V +
Sbjct: 14 NIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 299 STLSHDQMVDLLK---TSSLVTVTV 320
+ S +++V LL+ V++ V
Sbjct: 73 AGKSQEEVVSLLRSTKMEGTVSLLV 97
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 31.4 bits (71), Expect = 0.16
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHM---GLAYQEG-LKQGCRLIC--KVAVST 300
+ + L LG LG V +G ++ H+ G A +G L+ G LI V
Sbjct: 26 NKVIQTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLG 84
Query: 301 LSHDQMVDLLK---TSSLVTVTV 320
+ + + LL+ +++ +
Sbjct: 85 YTLREFLKLLQNITIGTVLQIKA 107
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 31.0 bits (70), Expect = 0.17
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 243 ATPGSPAQELTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQ--EGLKQGCRL-- 292
P + +K + G+ GF+V + +V+ V A L +G ++
Sbjct: 10 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 293 ICKVAVSTLSHDQMVDLLKTSS 314
I ++ +HDQ+V +K S
Sbjct: 70 INGRDIAEHTHDQVVLFIKASC 91
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 30.4 bits (69), Expect = 0.18
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 253 TLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
+ G G GF + L ++ V A L G + I S ++H
Sbjct: 6 QIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHL 65
Query: 305 QMVDLLKTSS 314
+ + +K +
Sbjct: 66 EAQNRIKGCT 75
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 30.9 bits (70), Expect = 0.18
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 272 VTEVEHMGLAYQEGLKQGCRLI--CKVAVSTLSHDQMVDLLK-TSSLVTVTVI 321
V V A +EGL++G +++ V + + ++ V L VT++
Sbjct: 55 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 31.3 bits (71), Expect = 0.20
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 240 LRAATPGSPAQELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQG 289
++ G + + ++R G LGF V Q G V +V+ +A ++ LK+
Sbjct: 17 IQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKEN 76
Query: 290 CRLICKVAV------STLSHDQMVDLLK-TSSLVTVTV 320
+++ A+ +SH Q + LL+ T+ + + V
Sbjct: 77 DQIL---AINHTPLDQNISHQQAIALLQQTTGSLRLIV 111
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 30.4 bits (69), Expect = 0.24
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 243 ATPGSPAQEL---TLKRNGLGQLGFHV-----------QPDGL-VTEVEHMGLAYQEG-L 286
+ GS EL L+++ G LG + + G+ V V G A ++G +
Sbjct: 1 GSSGSSGLELFPVELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRI 59
Query: 287 KQGCRLIC--KVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ +++ +++ ++ + +L+ T V +
Sbjct: 60 QVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVI 96
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 29.9 bits (68), Expect = 0.25
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 252 LTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH 303
++ G G GF +Q L ++ + A Q L QG + I V T++H
Sbjct: 3 YSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTH 62
Query: 304 DQMVDLLKTSS 314
+ + +K++S
Sbjct: 63 LEAQNKIKSAS 73
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 30.5 bits (69), Expect = 0.29
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 251 ELTLKRNGLGQLGFHV----QPDG--LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTL 301
L+++ G GF V +PD + + G A +G ++ G ++ V
Sbjct: 21 HTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 79
Query: 302 SHDQMVDLLKT---SSLVTVTV 320
+H Q+V + ++ + V + +
Sbjct: 80 THAQVVKIFQSIPIGASVDLEL 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.29
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 229 DRDELMEVVVRLRAATPGS-PAQELTLK 255
++ L ++ L+ S PA L +K
Sbjct: 18 EKQALKKLQASLKLYADDSAPA--LAIK 43
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 30.4 bits (69), Expect = 0.29
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 245 PGSPAQELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQGCRL-- 292
+ + ++++ LG V + V VE G+ ++G +K G L
Sbjct: 21 QSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLN 80
Query: 293 ICKVAVSTLSHDQMVDLLK-TSSLVTVTVI 321
+ V ++ +S + V LLK TSS + + +
Sbjct: 81 VDGVELTEVSRSEAVALLKRTSSSIVLKAL 110
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 30.5 bits (69), Expect = 0.31
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 241 RAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGL----------AYQEG-LKQG 289
+T + +TL++ G LGF ++ G + L + Q ++ G
Sbjct: 22 VESTAEATVCTVTLEKMSAG-LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPG 79
Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
+ + A+ L+ + +++K VT++
Sbjct: 80 DEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 30.1 bits (68), Expect = 0.34
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV---------QPDG------LVTEVEHMGLAYQEG-LK 287
+ P + + + R LG + +G + +V A + LK
Sbjct: 11 SHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALK 70
Query: 288 QGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
G ++ + V + SH + V+ +K + + V V
Sbjct: 71 TGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 30.1 bits (68), Expect = 0.36
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGF-------HVQPDG--LVTEVEHMGLAYQEG-LKQGCRLIC--KVAV 298
+ LK+ G LGF + V + G A Q+G LK G RLI V +
Sbjct: 33 NIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 91
Query: 299 STLSHDQMVDLLKTSS---LVTVTV 320
S +++V LL+++ V++ V
Sbjct: 92 VGKSQEEVVSLLRSTKMEGTVSLLV 116
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 29.6 bits (67), Expect = 0.38
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQM 306
++ GFH+ V V G A L G +++ LS ++
Sbjct: 13 KIDKDTLLQD-YGFHISESLPLTVVAVTAGGSA-HGKLFPGDQILQMNNEPAEDLSWERA 70
Query: 307 VDLLKTS-SLVTVTV 320
VD+L+ + +++TV
Sbjct: 71 VDILREAEDSLSITV 85
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 30.0 bits (68), Expect = 0.39
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 242 AATPGSPAQ--ELTLKRNGLGQLGFHV-------------QPDGL-VTEVEHMGLAYQEG 285
++P P E+ L +N LG V + G+ V V G A +G
Sbjct: 1 GSSPPKPGDIFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDG 59
Query: 286 -LKQGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ +G R+ + V++ +H Q V+ L+ T +V + +
Sbjct: 60 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 29.2 bits (66), Expect = 0.51
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 253 TLKRNGLGQLGFHV------------QPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
TL + G G + + + A+ G LK G R+ +
Sbjct: 10 TLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD 69
Query: 298 VSTLSHDQMVDLLKTS-SLVTVTV 320
V + ++DL+K + + + +
Sbjct: 70 VRNSTEQAVIDLIKEADFKIELEI 93
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 29.7 bits (67), Expect = 0.53
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 245 PGSPAQELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
P P + + + R G LGF++ ++ + G A G L++G ++ + V
Sbjct: 12 PREP-RRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69
Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTV 320
+ SH+Q LK + VT+
Sbjct: 70 DLRNASHEQAAIALKNAGQTVTIIA 94
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 29.2 bits (66), Expect = 0.58
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQGCRLI 293
+ + +T+ +G + V V G A +G L G +L+
Sbjct: 5 SDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 294 C--KVAVSTLSHDQMVDLLK-TSSLVTVTV 320
++ LS ++ +L+ TSS+VT+ V
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 29.2 bits (66), Expect = 0.70
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 243 ATPGSPAQ-----ELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGC 290
+ GS Q + +++ G GF + L V + G A + G ++ G
Sbjct: 1 GSSGSSGQDFDYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGD 59
Query: 291 RLIC--KVAVSTLSHDQMVDLLK-TSSLVTVTV 320
++I + ++H + ++L+K V + +
Sbjct: 60 QIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 29.2 bits (66), Expect = 0.73
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGL------VTEVEHMGLAYQEG-LKQGCRLIC--KV 296
EL +++ LG + Q V + A +G ++ +++ V
Sbjct: 17 ELFREKDTSS-LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTV 320
V ++ +V++L+ + V + +
Sbjct: 76 NVQGMAQSDVVEVLRNAGNPVRLLL 100
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 28.8 bits (65), Expect = 0.74
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVST 300
+ + + G LG + G ++ EV G A ++G L G ++ + + +
Sbjct: 7 TIEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRK 65
Query: 301 LSHDQMVDLLK-TSSLVTVTV 320
+HD+ +++L+ T V +T+
Sbjct: 66 ATHDEAINVLRQTPQRVRLTL 86
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 29.0 bits (65), Expect = 0.83
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 251 ELTLKRNGLGQLGFHV-------QPDG----LVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
+ LG + G + ++ G A Q G L +G ++ +
Sbjct: 21 DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80
Query: 297 AVSTLSHDQMVDLLKTSS-LVTVTVIPALSDGTP 329
+++ +++++ ++ S + V L+ P
Sbjct: 81 PLTSKTYEEVQSIISQQSGEAEICVRLDLNMSGP 114
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 28.9 bits (65), Expect = 0.84
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 244 TPGSPAQELTLKRNGLGQLGFHV---QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKV 296
+E+ L +G G LGF + + G+ V + GLA ++G L+ G + I
Sbjct: 11 VCWGHVEEVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGT 69
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTV 320
V ++ +Q+ +L+ + V + V
Sbjct: 70 NVQGMTSEQVAQVLRNCGNSVRMLV 94
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 28.9 bits (65), Expect = 0.89
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 250 QELTLKRNGLGQLGFHV---------QPDG------LVTEVEHMGLAYQEG-LKQGCRL- 292
+ + L R LG + +G + V A + G LK G R+
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 293 -ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ + + SH+Q V+ ++ + V V
Sbjct: 66 EVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 28.9 bits (65), Expect = 0.91
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTL 301
+ L+R G GF + L V + G A + G ++ G + I +
Sbjct: 27 TVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNM 85
Query: 302 SHDQMVDLLK-TSSLVTVTV 320
H + ++L+K V + +
Sbjct: 86 KHSRAIELIKNGGRRVRLFL 105
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 28.4 bits (64), Expect = 1.1
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 243 ATPGSPAQELTLKRNGLGQLGFHV--------QPDGL-VTEVEHMGLAYQEG-LKQGCRL 292
+ + L+R G LG + GL + + A +G L G R+
Sbjct: 3 SGSSGYVFTVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRI 61
Query: 293 --ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ ++ L + + VDL++ + V
Sbjct: 62 LEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV 92
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 28.5 bits (64), Expect = 1.2
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 242 AATPGSPAQELTLKRNGLGQLGFHV-----------QPDGL-VTEVEHMGLAYQEG-LKQ 288
++ S L R+ G LGF + G+ V+ + G A++ G L+
Sbjct: 1 GSSGSSGRHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59
Query: 289 GCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
G R+ I V V+ HD V LL S + + +
Sbjct: 60 GDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL 94
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 28.9 bits (65), Expect = 1.2
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 251 ELTLKRNGLGQLGFHV----------QPDGL-VTEVEHMGLAYQEG-LKQGCRLIC--KV 296
+ L R LG + + G+ V V AY G ++ +++ V
Sbjct: 18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTVIP 322
+ ++ +V++L+ +V +T++
Sbjct: 78 NIQGFANHDVVEVLRNAGQVVHLTLVR 104
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 28.5 bits (64), Expect = 1.3
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGL------VTEVEHMGLAYQEG-LKQGCRL--ICKV 296
E+ L + G LGF + VT++ G A+++G L+ G +L + V
Sbjct: 6 EIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTV 320
++ ++H++ V LK TS V + V
Sbjct: 65 SLEEVTHEEAVTALKNTSDFVYLKV 89
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 28.6 bits (64), Expect = 1.3
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 227 GGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHV------QPDGL-VTEVEHMG 279
G D + +R R A + L+++ G LG + + V + G
Sbjct: 4 GSSGDAFTDQKIRQRYADLPGELHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEG 62
Query: 280 LAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
A +G ++ G L I + SH ++KT+ S V +
Sbjct: 63 PAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVF 107
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 28.0 bits (63), Expect = 1.4
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 251 ELTLKRNGLGQLGFHV-----QPDGL------VTEVEHMGLAYQEG-LKQGCRL--ICKV 296
E+ L + G LGF + +T++ G A ++G L+ G RL +
Sbjct: 6 EVNLLKGPKG-LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 297 AVSTLSHDQMVDLLK-TSSLVTVTV 320
+ + H++ V LK TS +V + V
Sbjct: 65 NLQDVRHEEAVASLKNTSDMVYLKV 89
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 28.1 bits (63), Expect = 1.4
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 250 QELTLKRNGLGQLGF---------HVQPDG--LVTEVEHMGLAYQEG-LKQGCRL--ICK 295
+E+ L+R G LGF HV D +T++ G A +G L + + +
Sbjct: 6 EEIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 296 VAVSTLSHDQMVDLLK-TSSLVTVTV 320
V VS + H + V+ LK +V + V
Sbjct: 65 VDVSEVVHSRAVEALKEAGPVVRLVV 90
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 28.1 bits (63), Expect = 1.5
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 250 QELTLKRNGLGQLGFHV-----QPDGL------VTEVEHMGLAYQEG-LKQGCRLIC--K 295
+E+ L R G LGF++ Q V+ ++ G A +G L++G +++
Sbjct: 9 EEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 296 VAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ L H VDL + V++ V
Sbjct: 68 QDLKNLLHQDAVDLFRNAGYAVSLRV 93
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 28.1 bits (63), Expect = 1.5
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 243 ATPGSPAQ----ELTLKRNGLGQLGFHV--QPDGL-VTEVEHMGLAYQEGLKQGCRL--I 293
+ GS Q LT+ + G GF + P G V ++ + GL +G + I
Sbjct: 1 GSSGSSGQAELMTLTIVKGAQG-FGFTIADSPTGQRVKQILDIQGC--PGLCEGDLIVEI 57
Query: 294 CKVAVSTLSHDQMVDLLK---TSSLVTVTV 320
+ V LSH ++VD+LK S ++ +
Sbjct: 58 NQQNVQNLSHTEVVDILKDCPIGSETSLII 87
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 29.0 bits (64), Expect = 2.1
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 272 VTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQMVDLLKTSSL-VTVTVIPALSDGT 328
V V A +EGL++G +++ V + + ++ V L VT++
Sbjct: 35 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 94
Query: 329 PRRYADLKMWRS 340
RR + + S
Sbjct: 95 YRRIVESDVGDS 106
Score = 27.1 bits (59), Expect = 9.2
Identities = 9/128 (7%), Positives = 26/128 (20%), Gaps = 3/128 (2%)
Query: 71 SKSGQNTAKRSNHLNQTYERSFSPPRSSNSSGYGTGSSSRSFMGVDNRFPVSLEVSPATL 130
+ R++ RS + F +
Sbjct: 177 TLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVT 236
Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
+ R ++ + I + I ++ + +Q + +
Sbjct: 237 IFGPIADVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGI---IRLHTIKQIIDQDKHAL 293
Query: 191 FVAPAKSV 198
+V
Sbjct: 294 LDVTPNAV 301
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 27.5 bits (61), Expect = 3.0
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMV 307
+ L + G GF + +V+ + + +GL++G + I V L+H Q+V
Sbjct: 15 TIPLIKGPKG-FGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVV 73
Query: 308 DLLK---TSSLVTVTV 320
++LK + V + +
Sbjct: 74 EVLKQFPVGADVPLLI 89
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 28.7 bits (63), Expect = 3.1
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 272 VTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQMVDLLKTSSL-VTVTVIPALSDGT 328
V V A +EGL++G +++ V + + ++ V L VT++
Sbjct: 27 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDV 86
Query: 329 PRRYADLKMWRS 340
RR + + S
Sbjct: 87 YRRIVESDVGDS 98
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 27.0 bits (60), Expect = 4.2
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 244 TPGSPAQELTLKRNGLGQLGF---------HVQPDG------LVTEVEHMGLAYQEG-LK 287
+ + L R LG +G + V A + G LK
Sbjct: 20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
Query: 288 QGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV 320
G R+ + + + SH+Q V+ ++ + V V
Sbjct: 80 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 27.0 bits (60), Expect = 4.8
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 250 QELTLKRNGLGQLGF---------HVQPDG--LVTEVEHMGLAYQEG-LKQGCRLIC--K 295
+E+ L R G LGF +V D V+ ++ G A +G L++G +++
Sbjct: 19 EEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 77
Query: 296 VAVSTLSHDQMVDLLK-TSSLVTVTV 320
+ L H VDL + V++ V
Sbjct: 78 QDLKNLLHQDAVDLFRNAGYAVSLRV 103
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A
{Pyrococcus abyssi}
Length = 251
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 22 LGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELK 62
+G+D + V + LKR K + S QM RY ++ +
Sbjct: 162 MGVDKDGNIVVLELKRRKADLHAVS-QMKRYVDSLKEEYGE 201
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 26.5 bits (59), Expect = 5.1
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 243 ATPGSPAQ-----ELTLKRNGLGQLGFHV-------QPDGL-VTEVEHMGLAYQEG-LKQ 288
+ GS Q + L R G G + L V + G A + G L+
Sbjct: 1 GSSGSSGQASGHFSVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEV 59
Query: 289 GCRLIC--KVAVSTLSHDQMVDLLKTS-SLVTVTV 320
G ++ + L+H Q V+ ++ + + +
Sbjct: 60 GDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 27.8 bits (61), Expect = 5.2
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 225 GGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVE 276
+ L P PA+ L+ G ++ F V PDG V V+
Sbjct: 131 ATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQ 182
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 26.2 bits (58), Expect = 5.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 1 MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAIS 34
M+ +EI+ VL + L+ + G + +A+
Sbjct: 6 MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVG 39
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 26.2 bits (58), Expect = 5.8
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 18/88 (20%)
Query: 250 QELTLKRNGLGQLGF------------HVQPDG--LVTEVEHMGLAYQEGLKQGCRL--I 293
E+ ++ +LGF D VT V+ G A + L+ G ++
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQA 61
Query: 294 CKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
+ + H Q V LLKT + V + +
Sbjct: 62 NGYSFINIEHGQAVSLLKTFQNTVELII 89
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 26.8 bits (59), Expect = 7.2
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 152 AICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLY 211
+ V+ SK L IS + + +E++ L + A R +
Sbjct: 45 KLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAF 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,093,193
Number of extensions: 296213
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 155
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)