Query psy7
Match_columns 79
No_of_seqs 138 out of 1038
Neff 8.6
Searched_HMMs 46136
Date Sat Aug 17 00:11:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.6 2.3E-16 5E-21 109.4 5.6 49 26-79 460-508 (601)
2 cd00312 Esterase_lipase Estera 99.4 7.4E-14 1.6E-18 96.6 1.3 64 8-79 394-460 (493)
3 PF00135 COesterase: Carboxyle 99.3 1.5E-13 3.2E-18 94.9 -1.9 68 7-79 427-495 (535)
4 COG2272 PnbA Carboxylesterase 99.2 6.5E-12 1.4E-16 87.4 2.0 68 7-79 377-444 (491)
5 KOG1516|consensus 96.8 0.0021 4.6E-08 45.4 3.9 45 27-79 455-499 (545)
6 COG2238 RPS19A Ribosomal prote 36.8 16 0.00035 22.3 0.6 10 70-79 29-38 (147)
7 KOG2350|consensus 34.2 42 0.0009 21.7 2.2 14 64-77 144-157 (221)
8 KOG3847|consensus 22.6 38 0.00082 23.8 0.6 18 29-46 322-341 (399)
9 PF13137 DUF3983: Protein of u 21.6 1E+02 0.0022 14.0 1.9 9 66-74 19-27 (34)
10 PF08756 YfkB: YfkB-like domai 21.5 1.2E+02 0.0027 18.6 2.5 29 36-69 31-59 (153)
11 PHA02277 hypothetical protein 21.1 96 0.0021 18.6 2.0 23 57-79 5-27 (150)
12 PF11294 DUF3095: Protein of u 20.0 1.5E+02 0.0033 21.0 3.1 14 32-45 63-76 (373)
No 1
>KOG4389|consensus
Probab=99.65 E-value=2.3e-16 Score=109.44 Aligned_cols=49 Identities=43% Similarity=0.685 Sum_probs=45.9
Q ss_pred cCCCCCCCCCCchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy7 26 DHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 26 ~~~~~Ga~H~~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~~~w~nFak~G 79 (79)
+|+|+|+.||.||-|+||.|... ..+++++|+.+|++||++|+||||+|
T Consensus 460 WP~WmGVmHGYEIEyvFG~PL~~-----s~nYt~~E~~ls~rim~~WanFAktG 508 (601)
T KOG4389|consen 460 WPKWMGVMHGYEIEYVFGIPLNY-----SRNYTKEEKILSRRIMRYWANFAKTG 508 (601)
T ss_pred chhhhcCcccceEEEEecccccc-----cccccHHHHHHHHHHHHHHHHHhhcC
Confidence 78999999999999999999874 46889999999999999999999998
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.40 E-value=7.4e-14 Score=96.60 Aligned_cols=64 Identities=31% Similarity=0.505 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHhhcccc---cCCCCCCCCCCchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy7 8 TDPVRNRIRVSRVQGECI---DHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 8 ~~p~~~y~~~~~~~~d~~---~~~~~Ga~H~~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~~~w~nFak~G 79 (79)
+.|+|.|+|++.. ... .+.+.||+|++||+|+||.+... ...+++|+++++.|+++|+||||+|
T Consensus 394 ~~~vY~Y~F~~~~--~~~~~~~~~~~Ga~H~~Dl~ylFg~~~~~------~~~~~~d~~ls~~m~~~w~nFaktG 460 (493)
T cd00312 394 GSPVYAYVFDHRS--SLSVGRWPPWLGTVHGDEIFFVFGNPLLK------EGLREEEEKLSRTMMKYWANFAKTG 460 (493)
T ss_pred CCCeEEEEeccCC--cCCccccCCCCCcccCCceeeecCCCCCC------CCCCcHHHHHHHHHHHHHHHHhhhC
Confidence 5788999888753 221 35788999999999999986532 1234788999999999999999987
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.30 E-value=1.5e-13 Score=94.92 Aligned_cols=68 Identities=29% Similarity=0.462 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHhh-cccccCCCCCCCCCCchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy7 7 NTDPVRNRIRVSRVQ-GECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 7 ~~~p~~~y~~~~~~~-~d~~~~~~~Ga~H~~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~~~w~nFak~G 79 (79)
.+.|+|+|+|++... .....+.+.||+|++|++|+||.+.... ...+++++.+++.|+++|+||||+|
T Consensus 427 ~~~~vY~Y~F~~~~~~~~~~~~~~~ga~H~~Dl~ylFg~~~~~~-----~~~~~~~~~ls~~m~~~w~nFak~G 495 (535)
T PF00135_consen 427 GGSPVYLYRFDYPPPFIFSPDPPWRGACHGDDLPYLFGNPFLSP-----PNPTEDDRKLSDQMQRYWTNFAKTG 495 (535)
T ss_dssp TTSCEEEEEEHHSSTTSTECSETTGTSBTTTTHHHHTTGCCHCH-----HHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccceeecccccccccccccccccccchhhhhhhcCCCcccc-----cccccHHHHHHHHHHHHHHhcCCCC
Confidence 456777887776532 0123456889999999999999877531 1237889999999999999999997
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.19 E-value=6.5e-12 Score=87.36 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHhhcccccCCCCCCCCCCchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy7 7 NTDPVRNRIRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 7 ~~~p~~~y~~~~~~~~d~~~~~~~Ga~H~~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~~~w~nFak~G 79 (79)
...|+|.|+|.+. .+...++..||+|+.||.+|||+...... .......+.+++++|...|.||||+|
T Consensus 377 ~~ap~w~Yrf~~~--~~~~~~~~~gA~H~~El~~Vfg~~~~~~~---~~~~~~~~~~~s~~~~~~w~nFArtg 444 (491)
T COG2272 377 AGAPTWLYRFDYA--PDTVRVPGFGAPHATELSLVFGNLVALGS---AAQTARATAKLSRQMQDAWANFARTG 444 (491)
T ss_pred cCCCeeEEEeccC--CcccccccCCCccccceeeeecccccccc---ccccchHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999976 35667788999999999999999773322 23445667899999999999999987
No 5
>KOG1516|consensus
Probab=96.75 E-value=0.0021 Score=45.44 Aligned_cols=45 Identities=27% Similarity=0.528 Sum_probs=33.8
Q ss_pred CCCCCCCCCCchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy7 27 HHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 27 ~~~~Ga~H~~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~~~w~nFak~G 79 (79)
+...|+.|++|+.|+|+.+.... ....+..+..+ +.+|++||++|
T Consensus 455 ~~~~~~~h~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~fa~~g 499 (545)
T KOG1516|consen 455 DPDTGVEHADDLRYLFGENFLKR----PVMKSSFEKKL----IELWTNFAKTG 499 (545)
T ss_pred cCccCCcccccceeecccccccc----CCCCChHHHHH----HHHHHHHHhhC
Confidence 34569999999999999865431 23445566666 89999999986
No 6
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=36.81 E-value=16 Score=22.27 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=8.4
Q ss_pred HHHHHHhhcC
Q psy7 70 TYLSNFVRTG 79 (79)
Q Consensus 70 ~~w~nFak~G 79 (79)
.-|++|+|||
T Consensus 29 P~wa~~vKTG 38 (147)
T COG2238 29 PEWADIVKTG 38 (147)
T ss_pred hhhhhhhhcc
Confidence 3499999997
No 7
>KOG2350|consensus
Probab=34.21 E-value=42 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhh
Q psy7 64 LSEMLMTYLSNFVR 77 (79)
Q Consensus 64 ~s~~m~~~w~nFak 77 (79)
..+++|++|-.|++
T Consensus 144 ~ekr~mkLWNsfVr 157 (221)
T KOG2350|consen 144 GEKRVMKLWNSFVR 157 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 56889999999987
No 8
>KOG3847|consensus
Probab=22.64 E-value=38 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=14.6
Q ss_pred CCCCCCC--CchhhhcCCCc
Q psy7 29 RQGCVQG--EELPYMFGAPL 46 (79)
Q Consensus 29 ~~Ga~H~--~dl~yvFg~~~ 46 (79)
..|++|. .|+||+|++-.
T Consensus 322 ~~GsVHqnfsDfpfv~p~~i 341 (399)
T KOG3847|consen 322 LDGSVHQNFSDFPFVTPNWI 341 (399)
T ss_pred EccceecccccCccccHHHH
Confidence 4699998 89999998744
No 9
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=21.62 E-value=1e+02 Score=14.05 Aligned_cols=9 Identities=11% Similarity=-0.175 Sum_probs=6.2
Q ss_pred HHHHHHHHH
Q psy7 66 EMLMTYLSN 74 (79)
Q Consensus 66 ~~m~~~w~n 74 (79)
.++-++|-|
T Consensus 19 ~rv~kAWRN 27 (34)
T PF13137_consen 19 YRVDKAWRN 27 (34)
T ss_pred HHHHHHHHH
Confidence 556677877
No 10
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=21.55 E-value=1.2e+02 Score=18.57 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred CchhhhcCCCcCCCCCCCCCCCCHHHHHHHHHHH
Q psy7 36 EELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLM 69 (79)
Q Consensus 36 ~dl~yvFg~~~~~~~~~~~~~~~~~d~~~s~~m~ 69 (79)
.++..+||+.-.. +....++|+++-+++.
T Consensus 31 ~~~WMLFGTLPfy-----~Cs~~eeD~~Ll~RL~ 59 (153)
T PF08756_consen 31 PNVWMLFGTLPFY-----PCSDDEEDLALLKRLR 59 (153)
T ss_pred CCeeEEecccccc-----cCCCCHHHHHHHHHHH
Confidence 5788899974332 4566788888888764
No 11
>PHA02277 hypothetical protein
Probab=21.09 E-value=96 Score=18.65 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcC
Q psy7 57 YTKPEIQLSEMLMTYLSNFVRTG 79 (79)
Q Consensus 57 ~~~~d~~~s~~m~~~w~nFak~G 79 (79)
.+...+.+|+.=++.|.+|+.+|
T Consensus 5 isth~K~iS~~Dm~~W~e~V~tg 27 (150)
T PHA02277 5 ISTHTKGISQADMEKWIEAVVQG 27 (150)
T ss_pred hhHHHhhccHHHHHHHHHHHHhC
Confidence 35567788998899999999876
No 12
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=20.02 E-value=1.5e+02 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.968 Sum_probs=11.4
Q ss_pred CCCCCchhhhcCCC
Q psy7 32 CVQGEELPYMFGAP 45 (79)
Q Consensus 32 a~H~~dl~yvFg~~ 45 (79)
+..+.|+||+||.-
T Consensus 63 ~~~~~~~PFvFGGD 76 (373)
T PF11294_consen 63 ALGGRDFPFVFGGD 76 (373)
T ss_pred cccCCCCCeEecCC
Confidence 45889999999863
Done!