RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7
(79 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 71.7 bits (176), Expect = 9e-17
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 2 FTYHANTDPVRNRIRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPE 61
F +H TD V H G+E+PY+ G P++G FP N++K +
Sbjct: 438 FYHHCQTDQVPAWADA--------AH-------GDEVPYVLGIPMIGPTELFPCNFSKND 482
Query: 62 IQLSEMLMTYLSNFVRTG 79
+ LS ++MTY +NF +TG
Sbjct: 483 VMLSAVVMTYWTNFAKTG 500
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 61.6 bits (150), Expect = 3e-13
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G E+ ++FG PL YTK E LS ++ +NF + G
Sbjct: 435 GVMHGYEIEFVFGLPL-----ERRDQYTKAEEILSRSIVKRWANFAKYG 478
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 60.8 bits (148), Expect = 6e-13
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G E+ ++FG PL NYT E LS +M Y + F +TG
Sbjct: 437 GVIHGYEIEFVFGLPL-----VKELNYTAEEEALSRRIMHYWATFAKTG 480
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 60.8 bits (148), Expect = 7e-13
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G ++L Y+FG P P Y + +S+ ++ Y +NF RTG
Sbjct: 432 GADHADDLQYVFGKPFA-----TPLGYRAQDRTVSKAMIAYWTNFARTG 475
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 60.6 bits (147), Expect = 8e-13
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G+E+ Y FG PL Y E +L + +++ + F +TG
Sbjct: 477 GVLHGDEIEYFFGQPLNN-----SLQYRPVERELGKRMLSAVIEFAKTG 520
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 60.1 bits (146), Expect = 1e-12
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G G E+ ++FG PL NYT E ++ LM Y +NF RTG
Sbjct: 444 GVPHGYEIEFIFGLPL-----DPSLNYTTEERIFAQRLMKYWTNFARTG 487
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 59.3 bits (144), Expect = 2e-12
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G+EL +FGAP + ++ EI+LS+M+M + +NF R G
Sbjct: 446 IGDHGDELFSVFGAPF------LKEGASEEEIRLSKMVMKFWANFARNG 488
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 52.4 bits (126), Expect = 7e-10
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G E+L Y+F + G G+ + + + ++++NF++
Sbjct: 446 GAGHIEDLTYVFRTNSMLG-GHASFPPHDKDDHMKYWMTSFITNFMKYS 493
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 50.4 bits (121), Expect = 3e-09
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G ELP +FGA G + +Y + + M Y +FV+T
Sbjct: 421 GVPHTFELPAIFGAGSTGTLS-SDSSYLTYNAAIIPVTMHYFISFVQTL 468
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 49.6 bits (119), Expect = 5e-09
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
ELP++F G+ F ++ + +F RTG
Sbjct: 406 KACHALELPFVFHNLHQPGVANFV-GNRPEREAIANEMHYAWLSFARTG 453
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 48.8 bits (117), Expect = 1e-08
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
ELP++FG L G T QLS + + F +TG
Sbjct: 396 KAFHALELPFVFG-NLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTG 443
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 37.0 bits (86), Expect = 2e-04
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 16/45 (35%)
Query: 35 GEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G EL + F + + + Y +F
Sbjct: 464 GNELIFQFNVNI----------------GPANSYLRYFISFANHH 492
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 33.6 bits (77), Expect = 0.003
Identities = 2/45 (4%), Positives = 6/45 (13%), Gaps = 16/45 (35%)
Query: 35 GEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
++ + S + F
Sbjct: 450 ANDIVWQDYLLG----------------SGSVIYNNAFIAFATDL 478
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 26.4 bits (59), Expect = 0.34
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G+ P Y P
Sbjct: 48 NGQGWVPSAYITP 60
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 26.6 bits (59), Expect = 0.37
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 34 QGEELPYMFGAPLVGGMGYFPKNYTKPE 61
L GY P NY +
Sbjct: 44 LARHLEKKGTGLGQQLQGYIPSNYVAED 71
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 26.5 bits (59), Expect = 0.38
Identities = 6/21 (28%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 41 MFGAPLVGGM-GYFPKNYTKP 60
++G L G G+FP+++ +
Sbjct: 52 LYGERLRDGETGWFPEDFARF 72
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 25.7 bits (57), Expect = 0.66
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G GY P N+
Sbjct: 49 GCCGYIPANHVGK 61
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 25.7 bits (57), Expect = 0.69
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 48 GGMGYFPKNYTKPE 61
G GY P NY +
Sbjct: 45 GSEGYIPSNYVTGK 58
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 25.6 bits (57), Expect = 0.69
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G FP NY KP
Sbjct: 44 GRTGIFPANYVKP 56
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 26.7 bits (58), Expect = 0.71
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 23 ECIDHHRQGCVQGEELPYMFG-----APLVGGMGYFPKNYTKPEI--QLSEMLMT 70
IDHH + P + + LV ++ K E+ ++ +LM
Sbjct: 144 GIIDHHFDLQKHLDAEPRIVKVSGSCSSLVFNY-WYEKLQGDREVVMNIAPLLMG 197
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 26.2 bits (57), Expect = 0.80
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 37 ELPYMFGAPLVGGMGYFPKNYTKP 60
E + L G FP+N+T+
Sbjct: 90 ESDWNQHKELEKCRGVFPENFTER 113
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 25.6 bits (57), Expect = 0.82
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 41 MFGAPLVGG-MGYFPKNYTKP 60
+ G L+ G G FP +Y P
Sbjct: 43 LKGLSLLTGRTGIFPSDYVIP 63
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 25.2 bits (56), Expect = 0.82
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G G P Y +
Sbjct: 44 GKRGMIPVPYVEK 56
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 26.3 bits (58), Expect = 0.84
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 33 VQGEELPYMFGAPLVGGM-GYFPKNYTKPEIQL 64
+ E + + G GY P NY P +
Sbjct: 55 INNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 25.8 bits (57), Expect = 0.87
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 48 GGMGYFPKNYTKP--EIQLSEMLMTY 71
G GY P NY P IQ + L++
Sbjct: 50 GETGYIPSNYVAPVDSIQGEQKLISE 75
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 25.4 bits (56), Expect = 0.90
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 41 MFGAPLVGGM-GYFPKNYTKP 60
++G V G+FP +YTK
Sbjct: 44 LYGEHDVSKARGWFPSSYTKL 64
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 25.2 bits (56), Expect = 0.95
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G FP NY P
Sbjct: 44 NRRGIFPSNYVCP 56
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 25.4 bits (56), Expect = 1.1
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G GY P NY +
Sbjct: 59 GKKGYVPSNYIRK 71
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 25.3 bits (56), Expect = 1.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 42 FGAPLVGGMGYFPKNYTKP 60
G G P+ Y +P
Sbjct: 47 IAKDAKGNEGLVPRTYLEP 65
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 25.3 bits (56), Expect = 1.1
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G+ P Y K
Sbjct: 48 GRQGFVPAAYLKK 60
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 25.4 bits (56), Expect = 1.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G+FP +YTK
Sbjct: 53 KARGWFPSSYTKL 65
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 25.3 bits (56), Expect = 1.2
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 42 FGAPLVGGMGYFPKNYTKP 60
G G P Y +
Sbjct: 40 NAEDSEGKRGMIPVPYVEK 58
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 25.4 bits (56), Expect = 1.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 48 GGMGYFPKNYTKPEIQLSE 66
G GYFP N+ E E
Sbjct: 49 GQEGYFPANHVASETLYQE 67
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 24.9 bits (55), Expect = 1.2
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P NY
Sbjct: 50 KKEGFIPSNYVAK 62
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 25.0 bits (55), Expect = 1.2
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G+ P N+
Sbjct: 49 GQEGFIPFNFVAK 61
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 24.9 bits (55), Expect = 1.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G +G FPK + +
Sbjct: 47 GKVGIFPKVFVED 59
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 25.1 bits (55), Expect = 1.5
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 48 GGMGYFPKNYTKPE 61
GY P NY
Sbjct: 68 RKEGYIPSNYVARV 81
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 25.0 bits (55), Expect = 1.5
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 47 DRQGFVPAAYVKK 59
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 25.0 bits (55), Expect = 1.5
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G GY P Y P
Sbjct: 49 GETGYIPSIYLAP 61
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 25.0 bits (55), Expect = 1.5
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 51 ERQGFVPAAYVKK 63
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 24.8 bits (55), Expect = 1.5
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G P + +P
Sbjct: 47 GKSGLVPAQFIEP 59
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 25.1 bits (55), Expect = 1.6
Identities = 3/13 (23%), Positives = 3/13 (23%)
Query: 48 GGMGYFPKNYTKP 60
G Y P
Sbjct: 60 GRESYIPGICVAR 72
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 24.9 bits (55), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G +G PKNY
Sbjct: 51 GQVGLVPKNYVVV 63
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 25.0 bits (55), Expect = 1.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G GY P NY P
Sbjct: 59 GETGYIPSNYVAP 71
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 24.6 bits (54), Expect = 1.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G+FP +YT+
Sbjct: 53 KMRGWFPFSYTRV 65
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 25.1 bits (55), Expect = 1.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G +G PKNY
Sbjct: 62 GQVGLVPKNYVVV 74
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 24.6 bits (54), Expect = 2.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 48 GGMGYFPKNYTKP 60
GG G+FPK+Y K
Sbjct: 51 GGRGWFPKSYVKI 63
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 24.7 bits (54), Expect = 2.1
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 41 DRQGFVPAAYVKK 53
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 24.7 bits (54), Expect = 2.2
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 59 DRQGFVPAAYVKK 71
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 24.6 bits (53), Expect = 2.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
+G+FP N P
Sbjct: 63 NEVGWFPCNRVHP 75
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 24.5 bits (54), Expect = 2.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G FP NY KP
Sbjct: 49 DRSGIFPSNYVKP 61
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 24.6 bits (54), Expect = 2.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G+ P +Y K
Sbjct: 50 GKEGWAPASYLKK 62
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.6 bits (54), Expect = 2.2
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 48 GGMGYFPKNYTKPE 61
G+ P Y + +
Sbjct: 50 EEQGWVPATYLEAQ 63
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 24.7 bits (54), Expect = 2.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 48 GGMGYFPKNYTKPEIQLSE 66
G+G FP N+ + +
Sbjct: 59 RGIGLFPSNFVTTNLNIET 77
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 24.7 bits (54), Expect = 2.3
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 21 QGECIDHHRQ---GCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
G+ I ++ G QGE + G+FP ++ K
Sbjct: 28 PGQLILILKKNTSGWWQGE----LQARGKKRQKGWFPASHVKL 66
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 24.5 bits (53), Expect = 2.4
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
+G+FP N P
Sbjct: 55 NEVGWFPCNRVHP 67
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2
domain, structural genomics, NPPSFA; 2.20A
{Methanocaldococcus jannaschii}
Length = 307
Score = 25.2 bits (55), Expect = 2.5
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 23 ECIDHHRQG 31
IDHH+ G
Sbjct: 84 AIIDHHKVG 92
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 24.2 bits (53), Expect = 2.5
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G GY P N P
Sbjct: 50 GQEGYVPYNILTP 62
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 25.0 bits (54), Expect = 2.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G FP+NY P
Sbjct: 200 GQTGMFPRNYVTP 212
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 24.1 bits (53), Expect = 2.5
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G P + +P
Sbjct: 51 GKSGLVPAQFIEP 63
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 24.0 bits (53), Expect = 2.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
+G FP NY P
Sbjct: 43 NKLGLFPANYVAP 55
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 24.1 bits (53), Expect = 2.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y KP
Sbjct: 45 SKEGWVPTAYMKP 57
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase,
binuclear metal centre, hydrolas; 1.50A {Streptococcus
gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Length = 310
Score = 25.1 bits (55), Expect = 2.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 23 ECIDHHRQGCVQGEELPYMFGAPL 46
+DHHR + YM P+
Sbjct: 94 GVVDHHRVANFETANPLYMRLEPV 117
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A
{Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Length = 340
Score = 24.9 bits (55), Expect = 2.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 33 VQGEELP----YMFGAPLVGGMGYFPKNYTKPEIQLSE 66
V G EL + P VGG+ F +NY + QL
Sbjct: 8 VAGYELSAEDREILQHPTVGGVILFGRNYHDNQ-QLLA 44
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 24.8 bits (54), Expect = 2.7
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G P+NY
Sbjct: 64 GCSGLLPENYITK 76
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 24.0 bits (52), Expect = 2.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 48 GGMGYFPKNYTKPEI 62
G +G+FP NY E+
Sbjct: 43 GQIGWFPSNYVLEEV 57
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 24.1 bits (53), Expect = 2.8
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G FP+NY
Sbjct: 44 GQTGMFPRNYVTA 56
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 24.1 bits (53), Expect = 2.9
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 48 GGMGYFPKNYTKPEIQLSE 66
+G FP N+ K E++L
Sbjct: 43 NKLGLFPSNFVK-ELELEH 60
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 24.1 bits (53), Expect = 3.0
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 48 GGMGYFPKNYTKPE 61
G GY P NY
Sbjct: 51 GQEGYIPSNYVTEA 64
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 24.3 bits (53), Expect = 3.1
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
GY P NY
Sbjct: 46 RKEGYIPSNYVAR 58
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 24.1 bits (53), Expect = 3.3
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G G P NY
Sbjct: 49 GRTGLIPSNYVAE 61
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 24.1 bits (53), Expect = 3.3
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G GY P N
Sbjct: 49 GQAGYVPCNILGE 61
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 23.8 bits (52), Expect = 3.4
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 43 GAPLVGGMGYFPKNYTKPE 61
+ G FPK++ +
Sbjct: 49 DSNGDVIEGIFPKSFVAVQ 67
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 23.9 bits (52), Expect = 3.4
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 43 GAPLVGGMGYFPKNYTKPE 61
A GY P NY
Sbjct: 52 EAGGAVAQGYVPHNYLAER 70
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 24.3 bits (53), Expect = 3.4
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G FP NY
Sbjct: 61 GQTGIFPANYVTM 73
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 24.3 bits (53), Expect = 3.4
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G FP + +P
Sbjct: 52 GRSGLFPADIVQP 64
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex,
hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP:
c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Length = 309
Score = 24.8 bits (54), Expect = 3.4
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 23 ECIDHHRQG 31
E IDHHR
Sbjct: 93 EVIDHHRIA 101
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 23.8 bits (52), Expect = 3.6
Identities = 1/13 (7%), Positives = 4/13 (30%)
Query: 48 GGMGYFPKNYTKP 60
G ++ +
Sbjct: 52 DEQGLIVEDLVEE 64
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 23.9 bits (52), Expect = 3.6
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 44 DRQGFVPAAYVKK 56
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 24.0 bits (52), Expect = 3.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 48 GGMGYFPKNYTKPE 61
G +G+FP NY E
Sbjct: 59 GQVGWFPSNYVTEE 72
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 24.0 bits (52), Expect = 3.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G +G FP NY P
Sbjct: 77 GRVGVFPSNYVAP 89
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 23.7 bits (52), Expect = 3.9
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 48 GGMGYFPKNYTKPEIQLS 65
+G FP N+ K E++++
Sbjct: 49 NKLGLFPSNFVK-ELEVT 65
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 23.7 bits (52), Expect = 4.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G P NY +P
Sbjct: 49 GQKGLVPCNYLEP 61
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na
institute of allergy and infectious diseases; 1.38A
{Burkholderia cenocepacia}
Length = 342
Score = 24.5 bits (54), Expect = 4.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 33 VQGEELP----YMFGAPLVGGMGYFPKNYTKPEIQLSE 66
V G L P GG+ F +++ QL+
Sbjct: 12 VVGTTLSRDDARRLAHPNTGGVILFARHFQNRA-QLTA 48
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 23.8 bits (52), Expect = 4.4
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 48 GGMGYFPKNYTKPEIQLSE 66
G G FP Y + E
Sbjct: 50 GARGVFPAYYAIEVTKEPE 68
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 23.3 bits (51), Expect = 4.8
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G G FP Y
Sbjct: 47 GARGVFPAYYAIE 59
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 24.1 bits (52), Expect = 4.9
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 1 MFTYHANTDPVRNRIR-VSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTK 59
++Y+ P N + G+ + + G + G L G G P N+
Sbjct: 23 RYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDG----FYEGELLDGQRGLVPSNFVD 78
Query: 60 P 60
Sbjct: 79 F 79
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for
structural genomics, structu genomic, MCSG, hydrolase;
2.30A {Deinococcus radiodurans}
Length = 351
Score = 24.2 bits (53), Expect = 4.9
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSE 66
G ++ +G + F KN E QL
Sbjct: 28 GPELDKDTAAYLREHGIGAVCLFGKNVESAE-QLRR 62
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral
virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Length = 554
Score = 24.0 bits (51), Expect = 8.0
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 37 ELPYMFGAPLVGGMGYFPKNYTKP 60
+ PY+ G P P
Sbjct: 158 KYPYVLGQGQDTLAPELPIWVYFP 181
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 24.1 bits (51), Expect = 8.1
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 40 YMFGAPLVGGM-GYFPKNYTKPEIQLSEM 67
Y G G G +P + +I+ +
Sbjct: 477 YSKGVNRKLGRTGLYPSYKVREKIETVKY 505
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.440
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,242,154
Number of extensions: 58819
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 90
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)