RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7
(79 letters)
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 50.0 bits (118), Expect = 2e-09
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G ++L Y+FG P P Y + +S+ ++ Y +NF RTG
Sbjct: 432 GADHADDLQYVFGKPFA-----TPLGYRAQDRTVSKAMIAYWTNFARTG 475
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 49.3 bits (116), Expect = 2e-09
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G E+ ++FG PLV + NYT E LS +M Y + F +TG
Sbjct: 434 GVIHGYEIEFVFGLPLVKEL-----NYTAEEEALSRRIMHYWATFAKTG 477
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 48.6 bits (114), Expect = 5e-09
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G E+ ++FG PL YTK E LS ++ +NF + G
Sbjct: 432 GVMHGYEIEFVFGLPL-----ERRDQYTKAEEILSRSIVKRWANFAKYG 475
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 48.2 bits (113), Expect = 6e-09
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G ELP +FGA G + +Y + + M Y +FV+T
Sbjct: 416 GVPHTFELPAIFGAGSTGTL-SSDSSYLTYNAAIIPVTMHYFISFVQTL 463
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 48.2 bits (113), Expect = 7e-09
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G G E+ ++FG PL + NYT E ++ LM Y +NF RTG
Sbjct: 444 GVPHGYEIEFIFGLPLDPSL-----NYTTEERIFAQRLMKYWTNFARTG 487
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 47.8 bits (112), Expect = 1e-08
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G + G+E+ Y FG PL + Y E +L + +++ + F +TG
Sbjct: 475 GVLHGDEIEYFFGQPLNNSL-----QYRPVERELGKRMLSAVIEFAKTG 518
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 47.8 bits (112), Expect = 1e-08
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G+EL +FGAP + + ++ EI+LS+M+M + +NF R G
Sbjct: 444 IGDHGDELFSVFGAP------FLKEGASEEEIRLSKMVMKFWANFARNG 486
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 45.8 bits (107), Expect = 5e-08
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
ELP++FG L G T QLS + + F +TG
Sbjct: 395 KAFHALELPFVFG-NLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTG 442
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 36.3 bits (82), Expect = 1e-04
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 16/49 (32%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G G EL + F + + + Y +F
Sbjct: 460 GTFHGNELIFQFNVNI----------------GPANSYLRYFISFANHH 492
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain
{Escherichia coli [TaxId: 562]}
Length = 90
Score = 29.8 bits (67), Expect = 0.011
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 10 PVRNRIRVSRVQGE---CIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSE 66
V R+ S V+G + Q + PL+ GM + + ++ L +
Sbjct: 8 EVNKRLEYSLVKGITEFIEQDTEEARQQATRPCEVIEGPLMDGMNVVGDLFGEGKMFLPQ 67
Query: 67 MLMT 70
++ +
Sbjct: 68 VVKS 71
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 28.6 bits (62), Expect = 0.067
Identities = 3/49 (6%), Positives = 7/49 (14%), Gaps = 16/49 (32%)
Query: 31 GCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSEMLMTYLSNFVRTG 79
G ++ + S + F
Sbjct: 446 GTFHANDIVWQDYLLG----------------SGSVIYNNAFIAFATDL 478
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 67
Score = 27.1 bits (60), Expect = 0.075
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 21 QGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTK 59
+G+ + + G + + G +GY P NY +
Sbjct: 27 KGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise
(Geochelone gigantea) [TaxId: 167804]}
Length = 146
Score = 26.2 bits (57), Expect = 0.32
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 27 HHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKPEIQLS 65
H + V E + ++ +FPK +T P Q +
Sbjct: 92 HCEKLHVDPENFKLLGNILIIVLATHFPKEFT-PASQAA 129
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 25.8 bits (56), Expect = 0.38
Identities = 8/57 (14%), Positives = 17/57 (29%)
Query: 1 MFTYHANTDPVRNRIRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNY 57
+F Y D +S G+ + G + + + +G+ P
Sbjct: 7 LFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 25.7 bits (56), Expect = 0.38
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 1 MFTYHANTD---PVRNRIRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGM-GYFPKN 56
Y A ++ V + + + +G + G + + G FP+N
Sbjct: 18 QHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPEN 77
Query: 57 YTKP 60
+T+
Sbjct: 78 FTER 81
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 25.6 bits (56), Expect = 0.38
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 22 GECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
GE ++ + E + G +G PKNY
Sbjct: 28 GETMEVIEKPENDPE---WWKCKNARGQVGLVPKNYVVV 63
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 24.3 bits (53), Expect = 0.73
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G+ P NY P
Sbjct: 43 NGQGWVPSNYITP 55
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.9 bits (54), Expect = 0.78
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 23 ECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
+ + G QGE + G+FP ++ K
Sbjct: 33 LILKKNTSGWWQGE----LQARGKKRQKGWFPASHVKL 66
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 24.3 bits (53), Expect = 0.83
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G FP+NY P
Sbjct: 43 GQTGMFPRNYVTP 55
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 24.7 bits (53), Expect = 0.88
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 1 MFTYHANTDPVRNRIR-VSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTK 59
++Y+ P N + G+ + + +E + G L G G P N+
Sbjct: 23 RYSYNPFDGPNENPEAELPLTAGKYLYVYGDM----DEDGFYEGELLDGQRGLVPSNFVD 78
Query: 60 P 60
Sbjct: 79 F 79
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 24.2 bits (53), Expect = 0.90
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G FP NY P
Sbjct: 44 NRRGIFPSNYVCP 56
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 23.9 bits (52), Expect = 0.94
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 41 MFGAPLVGGMGYFPKNYTKP 60
G G P Y +
Sbjct: 37 WNAEDSEGKRGMIPVPYVEK 56
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 59
Score = 24.1 bits (52), Expect = 0.99
Identities = 4/20 (20%), Positives = 5/20 (25%)
Query: 41 MFGAPLVGGMGYFPKNYTKP 60
G G+ P N
Sbjct: 36 WKVRNASGDSGFVPNNILDI 55
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 24.0 bits (52), Expect = 1.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G GY P NY P
Sbjct: 46 GQTGYIPSNYVAP 58
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 23.9 bits (52), Expect = 1.1
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
+G FP NY P
Sbjct: 43 NKLGLFPANYVAP 55
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 24.0 bits (52), Expect = 1.1
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
GY P NY
Sbjct: 47 RKEGYIPSNYVAR 59
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 23.9 bits (52), Expect = 1.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G GY P NY P
Sbjct: 44 GETGYIPSNYVAP 56
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 24.1 bits (52), Expect = 1.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
+G+FP N P
Sbjct: 55 NEVGWFPCNRVHP 67
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 23.9 bits (52), Expect = 1.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G +G FPK + +
Sbjct: 47 GKVGIFPKVFVED 59
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 24.0 bits (52), Expect = 1.4
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G FP NY KP
Sbjct: 49 DRSGIFPSNYVKP 61
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 23.6 bits (51), Expect = 1.5
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 40 YMFGAPLVGGMGYFPKNYTKPE 61
+ G GY P NY +
Sbjct: 37 WWRARDKYGSEGYIPSNYVTGK 58
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 23.6 bits (51), Expect = 1.7
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 1 MFTYHANTDPVRNRIRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGG-MGYFPKNYTK 59
+F + A + +S QG+ + G +++G G+FP +YTK
Sbjct: 13 IFPHTAGNNKTL----LSFAQGDVLTLLIPEEKDG----WLYGEHDTTKARGWFPSSYTK 64
Query: 60 P 60
Sbjct: 65 L 65
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.7 bits (51), Expect = 1.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G GY P NY +
Sbjct: 59 GKKGYVPSNYIRK 71
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 23.5 bits (50), Expect = 2.0
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 23 ECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
+ + ++Q + G+ P + P
Sbjct: 33 QVLAVNQQNMCLVYQPASD---HSPAAEGWVPGSILAP 67
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 23.2 bits (50), Expect = 2.3
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 40 YMFGAPLVGGMGYFPKNYTKP 60
+ G GY P NY
Sbjct: 43 WWRARDKNGQEGYIPSNYVTE 63
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 23.1 bits (50), Expect = 2.4
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 48 GGMGYFPKNYTKP 60
G+ P Y K
Sbjct: 42 DRQGFVPAAYVKK 54
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 22.9 bits (49), Expect = 2.5
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 21 QGECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
G+ ++ + + + G+ P ++ +P
Sbjct: 23 TGDVVEVVEKSE------SGWWFCQMKAKRGWIPASFLEP 56
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 22.8 bits (49), Expect = 2.5
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 22 GECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTK 59
G+ I ++ + + + G G FP NY +
Sbjct: 23 GDVITILKKS----DSQNDWWTGRVNGREGIFPANYVE 56
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 22.7 bits (49), Expect = 2.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 48 GGMGYFPKNYTKPEI 62
G G FP N+ ++
Sbjct: 44 RGTGLFPSNFVTTDL 58
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 23.3 bits (50), Expect = 2.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G+FP NY +
Sbjct: 52 GRTGWFPSNYVRE 64
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 23.5 bits (50), Expect = 2.9
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
GYFP Y +
Sbjct: 56 DVTGYFPSMYLQK 68
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 22.8 bits (49), Expect = 3.0
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G P NY +
Sbjct: 47 GRTGMLPANYVEA 59
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 22.8 bits (49), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 48 GGMGYFPKNYTKP 60
GG G+FPK+Y K
Sbjct: 51 GGRGWFPKSYVKI 63
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 22.9 bits (49), Expect = 3.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 48 GGMGYFPKNYTKP 60
G G P NY +
Sbjct: 50 GREGIIPANYVQK 62
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 22.4 bits (48), Expect = 4.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 22 GECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTKP 60
G+C+ + + E+ + A L GY P+N
Sbjct: 26 GDCMTIIHR---EDEDEIEWWWARLNDKEGYVPRNLLGL 61
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 83
Score = 22.8 bits (48), Expect = 4.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 15 IRVSRVQGECIDHHRQGCVQGEELPYMFGAPLVGGM-GYFPKNYTKP 60
+ V++ + + EE+ ++ G G G FP Y +
Sbjct: 28 LTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEY 74
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 22.4 bits (48), Expect = 4.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 48 GGMGYFPKNYTK 59
G G+ PKNY +
Sbjct: 43 GKDGFIPKNYIE 54
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 22.7 bits (48), Expect = 4.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G+FP NY +
Sbjct: 49 GNFGWFPCNYVEK 61
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 22.6 bits (48), Expect = 5.0
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 23 ECIDHHRQGCVQGEELPYMFGAPLVGGMGYFPKNYTK 59
++ QGE + G G FP NY K
Sbjct: 60 NVMNKDDPDWWQGE---------INGVTGLFPSNYVK 87
Score = 22.2 bits (47), Expect = 7.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 48 GGMGYFPKNYTKP 60
G G+FP ++ K
Sbjct: 7 GQKGWFPASHVKL 19
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 23.0 bits (49), Expect = 5.2
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 34 QGEELPYMFGAPLVGGMGYFPKNYTKPEIQLSE 66
+ PY+FGAP+ N P+ +LS
Sbjct: 454 RALSAPYLFGAPI---------NMLAPDARLST 477
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD
{Escherichia coli [TaxId: 562]}
Length = 341
Score = 23.1 bits (49), Expect = 5.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 36 EELPYMFGAPLVGG 49
+ L Y+ G P G
Sbjct: 5 DNLTYLHGKPQGTG 18
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 22.8 bits (48), Expect = 5.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 48 GGMGYFPKNYTKPEIQLSE 66
+GYFP + + + L
Sbjct: 74 ARLGYFPSSIVREDQTLKP 92
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 22.1 bits (47), Expect = 6.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 48 GGMGYFPKNYTKP 60
G G P+NY +
Sbjct: 53 GKTGLIPENYVEF 65
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 22.9 bits (49), Expect = 6.6
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 37 ELPYMFGAPLVGGMGYFPKNYTKP 60
+ PY+ G P P
Sbjct: 140 KYPYVLGQGQDTLAPELPIWVYFP 163
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 22.6 bits (48), Expect = 8.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 37 ELPYMFGAPLVGGMGYFPKNYTKP 60
+P+ A +G++P T P
Sbjct: 146 TMPFTPAAMRSETLGFYPWKPTIP 169
>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis
virus, VSV [TaxId: 11276]}
Length = 170
Score = 22.1 bits (47), Expect = 9.7
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 18 SRVQGECIDHHRQG 31
+ +G HR G
Sbjct: 76 AHCEGRAYLPHRMG 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.440
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 302,838
Number of extensions: 11787
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 60
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)