BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy70
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 16 SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
S + + P ++QYEV FQ+ +CGGAY+KLL++ P L +L F+DKTPYTIMFG
Sbjct: 89 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFG 147
Query: 76 PDKCGTDDKV 85
PDKCG D K+
Sbjct: 148 PDKCGEDYKL 157
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine
Peptide, Nmr, Ensemble Of Structures
Length = 160
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 1 MPESSKPHQWQSDEASVRAGTCYFHVK 27
+PESSKPHQWQ+DE +VR+ TC F VK
Sbjct: 9 VPESSKPHQWQADEEAVRSATCSFSVK 35
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30 FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
V+Q+ V + DCGG Y+KL P D T + + Y IMFGPD CG
Sbjct: 82 LVVQFTVKHEQNIDCGGGYVKLF---PNSLDQTDMHGDSEYNIMFGPDICG 129
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30 FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
V+Q+ V + DCGG Y+KL G +D+ + Y IMFGPD CG
Sbjct: 77 LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICG 124
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30 FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
V+Q+ V + DCGG Y+KL G +D+ + Y IMFGPD CG
Sbjct: 77 LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICG 124
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 SSKPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEG 55
+S+PHQWQ+DE +VR GTC F V+ ++ E + H C A KL G
Sbjct: 24 ASRPHQWQADEDAVRKGTCSFPVRYLGHVEVE-ESRGMHVCEDAVKKLKAMG 74
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 30 FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
V+Q+ V + DCGG Y+KL G +D + Y I FGPD CG
Sbjct: 77 LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHG---DSEYNIXFGPDICG 124
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 6 KPHQWQSDEASVRAGTCYFHVK 27
+PHQWQ+DE VR G C F VK
Sbjct: 10 RPHQWQTDEEGVRTGKCSFPVK 31
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 8 HQWQSDEASVRAGTCYFHVK 27
HQWQ+DE +VR+ TC F VK
Sbjct: 1 HQWQADEEAVRSATCSFSVK 20
>pdb|1A5D|A Chain A, Gammae Crystallin From Rat Lens
pdb|1A5D|B Chain B, Gammae Crystallin From Rat Lens
pdb|1ZGT|A Chain A, Structure Of Hydrogenated Rat Gamma E Crystallin In H2o
pdb|1ZIE|A Chain A, Hydrogenated Gammae Crystallin In D2o Solvent
pdb|1ZIQ|A Chain A, Deuterated Gammae Crystallin In D2o Solvent
pdb|1ZIR|A Chain A, Deuterated Gammae Crystallin In H2o Solvent
Length = 173
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 9 QWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKT 68
QW SVR+ +P + + ++ D G +++ + P LQD F+D
Sbjct: 67 QWMGFSDSVRSCRL-----IPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFH 121
Query: 69 PYTIMFG 75
+ +M G
Sbjct: 122 SFHVMEG 128
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 21 TCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMF 74
T Y H+K F++ + K + LK+L P + ++ DKTPY F
Sbjct: 254 TEYQHMKAGFILSASSLVHAKPN-----LKVLHPLPRVDEIATDVDKTPYAYYF 302
>pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
pdb|3LXM|C Chain C, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic
Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From
Yersinia Pestis Co92
Length = 335
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 23 YFHVKVPFVIQYEVMFQDKHDCGGAY--LKLLTEGPALQDLTAFNDKTPYTIMF 74
Y +VK F+++ D GA LK+L P + ++T DKTPY F
Sbjct: 265 YANVKAQFILR-------SSDLTGARDNLKVLHPLPRIDEITTDVDKTPYAYYF 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,021,513
Number of Sequences: 62578
Number of extensions: 106117
Number of successful extensions: 170
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)