RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy70
         (88 letters)



>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus
           familiaris} SCOP: b.29.1.12 b.104.1.1
          Length = 424

 Score = 84.4 bits (208), Expect = 4e-21
 Identities = 36/57 (63%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+
Sbjct: 102 PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKL 157


>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
           binding, carbohydrate binding, calcium binding,
           endoplasmic reticulu; 2.57A {Mus musculus}
          Length = 332

 Score = 80.5 bits (198), Expect = 6e-20
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK 84
             V+Q+ V  +   DCGG Y+KL   G    D    +  + Y IMFGPD CG   K
Sbjct: 76  TLVVQFTVKHEQNIDCGGGYVKLFPSG---LDQKDMHGDSEYNIMFGPDICGPGTK 128


>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
           carboh binding, peptide binding, multi-compartmental,
           chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
           3o0v_A* 3o0x_A*
          Length = 265

 Score = 71.7 bits (175), Expect = 6e-17
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK 84
             V+Q+ V  +   DCGG Y+KL        D T  +  + Y IMFGPD CG   K
Sbjct: 81  TLVVQFTVKHEQNIDCGGGYVKLFPNS---LDQTDMHGDSEYNIMFGPDICGPGTK 133


>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
          phosphoprotein, signaling protei structural genomics,
          structural genomics consortium, SGC; 2.70A {Homo
          sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
          Length = 168

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 15/26 (57%), Positives = 20/26 (76%)

Query: 2  PESSKPHQWQSDEASVRAGTCYFHVK 27
            +S+PHQWQ+DE +VR GTC F V+
Sbjct: 22 SMASRPHQWQADEDAVRKGTCSFPVR 47


>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
          musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
          Length = 152

 Score = 27.5 bits (61), Expect = 0.38
 Identities = 1/23 (4%), Positives = 5/23 (21%)

Query: 5  SKPHQWQSDEASVRAGTCYFHVK 27
           +     +     +     +  K
Sbjct: 1  GQDRSEATLIKRFKGEGVRYKAK 23


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,288,727
Number of extensions: 58686
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)