RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy70
         (88 letters)



>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 249

 Score = 80.7 bits (199), Expect = 7e-21
 Identities = 36/57 (63%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+
Sbjct: 86  PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKL 141


>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 156

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 3  ESSKPHQWQSDEASVRAGTCYFHVK 27
           +S+PHQWQ+DE  VR G C F VK
Sbjct: 7  GASRPHQWQTDEEGVRTGKCSFPVK 31


>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 135

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 8  HQWQSDEASVRAGTCYFHVK 27
          HQWQ+DE +VR+ TC F VK
Sbjct: 1  HQWQADEEAVRSATCSFSVK 20


>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 191

 Score = 24.2 bits (52), Expect = 2.2
 Identities = 3/24 (12%), Positives = 6/24 (25%)

Query: 4  SSKPHQWQSDEASVRAGTCYFHVK 27
          +     W      V      + V+
Sbjct: 16 NKPTRGWLHPNDKVMGPGVSYLVR 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,472
Number of extensions: 11698
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)