BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7003
(1520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 183/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G + L + G T + + + R + Y R
Sbjct: 842 FLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIRGTGRIC 901
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ P+ R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 902 KTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEG 961
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLF- 1309
S +Y R+ +E FN + NRW+KRG+ + T F
Sbjct: 962 FTLPRCWDECIASSQYLARKREVEKFN---------------RENRWKKRGLCIIPTKFG 1006
Query: 1310 ---PLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
L F + A++ V+ D +V +T G E+GQGLHTK+ Q + L IP KI +
Sbjct: 1007 ISFTLPFLNQGGALVHVYT-DGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISE 1065
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGV 1424
N PN + T S ++D + + CQ + RL P+ K + WE + DA+ V
Sbjct: 1066 TSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPFKKKKPTGPWEAWVMDAYTSAV 1125
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1126 SLSAT---GFYKTPNL--GYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVM 1180
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1181 DVGSSLNPAIDIGQVEGAFVQGLGLFTME-ELHYSPEGSLHT 1221
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 160/349 (45%), Gaps = 59/349 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A PG F
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCF 634
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ A+D+P N +F DE
Sbjct: 635 LTAEDVPNSNAT-----------------------------------------GLFNDET 653
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++EV G IIGA++AD + A AA+ VK+ Y D+ P + Q + + E
Sbjct: 654 VFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYEDL--PAIITIQDAINNNSFYGSE 711
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
+ K+E K FS N + G G Q H+ +E + VP +
Sbjct: 712 I-KIEKGDLKKGFSEADNV-------------VSGELYIGGQEHFYLETNCTIAVPKGEA 757
Query: 984 --VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
++++ ++Q Q VA +LG+P+NR+ V+ +R+GGG+G K +RS + A+ ++
Sbjct: 758 GEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAH 817
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSS 1090
+PVR ++ + M GGR+P A Y++G + + E FS+
Sbjct: 818 KTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSN 866
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 49/213 (23%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +SVNACL + A+TTVEG+G+ +K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFSCD 230
T E+E A GN+CRCTG+RPIL F++F+ D
Sbjct: 133 PTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEA 625
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 341 CGVCT-------VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSC 393
CG CT T+ + P V+ + F N+CRCTG+RPIL F++F+
Sbjct: 112 CGFCTPGIVMSMYTLLRNQPEPTVEEI-------ENAFQGNLCRCTGYRPILQGFRTFAK 164
Query: 394 D 394
D
Sbjct: 165 D 165
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 182/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G + L + G T + + + R + Y R
Sbjct: 843 FLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTGRLC 902
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ P+ R G + E M +A +VR NL E D+ F Q+ G
Sbjct: 903 KTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKLEG 962
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 963 FTLPRCWEECLASSQYHARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 1007
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A+L V+ D +V +T G E+GQGLHTK+ Q + L IP KI +
Sbjct: 1008 ISFTVPFLNQAGALLHVYT-DGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISE 1066
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGV 1424
N PN + T S ++D + + CQ + RL PY K S WE ++ A+ V
Sbjct: 1067 TSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTV 1126
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1127 SLSAT---GFYRTPNL--GYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVM 1181
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1182 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 1222
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 160/349 (45%), Gaps = 59/349 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E +V + R AKI+SID++ A
Sbjct: 576 RPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEA--------- 626
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
K PG F+ A D+PG N+ I DE
Sbjct: 627 -------------------------KKVPGFVCFISADDVPGSNIT-------GICNDET 654
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA+++V G IIGA++AD + AA+ VK+ Y ++ + I+ +++ +
Sbjct: 655 VFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPA-IITIEDAIKN--NSFYGP 711
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
K+E K FS N + G G Q H+ +E + VP +
Sbjct: 712 ELKIEKGDLKKGFSEADNV-------------VSGEIYIGGQEHFYLETHCTIAVPKGEA 758
Query: 984 --VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K++RS + A+ +
Sbjct: 759 GEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKVTRSTVVSTAVALAAY 818
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSS 1090
+PVR ++ + M GGR+P A Y++G + + E FS+
Sbjct: 819 KTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSN 867
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L GTK C EGGCG CTV ++
Sbjct: 2 TADKLVFFVNG-RKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E +V + R AKI+SID++ A
Sbjct: 576 RPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEA 626
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 341 CGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT + S + + F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 166 bits (421), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 182/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G + L + G T + + + R + Y R
Sbjct: 843 FLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTGRLC 902
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ P+ R G + E M +A +VR NL E D+ F Q+ G
Sbjct: 903 KTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQKLEG 962
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 963 FTLPRCWEECLASSQYHARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 1007
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A+L V+ D +V +T G E+GQGLHTK+ Q + L IP KI +
Sbjct: 1008 ISFTVPFLNQAGALLHVYT-DGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIYISE 1066
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGV 1424
N PN + T S ++D + + CQ + RL PY K S WE ++ A+ V
Sbjct: 1067 TSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTV 1126
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1127 SLSAT---GFYRTPNL--GYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVM 1181
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1182 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 1222
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 59/349 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E +V + R AKI+SID++ A
Sbjct: 576 RPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEA--------- 626
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
K PG F+ A D+PG N+ I DE
Sbjct: 627 -------------------------KKVPGFVCFISADDVPGSNIT-------GICNDET 654
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA+++V G IIGA++AD + AA+ VK+ Y ++ + I+ +++ +
Sbjct: 655 VFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPA-IITIEDAIKN--NSFYGP 711
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
K+E K FS N + G G Q H+ +E + VP +
Sbjct: 712 ELKIEKGDLKKGFSEADNV-------------VSGEIYIGGQEHFYLETHCTIAVPKGEA 758
Query: 984 --VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS + A+ +
Sbjct: 759 GEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKETRSTVVSTAVALAAY 818
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSS 1090
+PVR ++ + M GGR+P A Y++G + + E FS+
Sbjct: 819 KTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSN 867
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L GTK C EGGCG CTV ++
Sbjct: 2 TADKLVFFVNG-RKVVEKNADPETTLLAYLRRKLGLSGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E +V + R AKI+SID++ A
Sbjct: 576 RPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEA 626
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 341 CGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT + S + + F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 182/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G + L + G T + + + R + Y R
Sbjct: 842 FLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIRGTGRIC 901
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ P+ R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 902 KTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEG 961
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLF- 1309
S +Y R+ +E FN + N W+KRG+ + T F
Sbjct: 962 FTLPRCWDECIASSQYLARKREVEKFN---------------RENCWKKRGLCIIPTKFG 1006
Query: 1310 ---PLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
L F + A++ V+ D +V +T G E+GQGLHTK+ Q + L IP KI +
Sbjct: 1007 ISFTLPFLNQGGALVHVYT-DGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISE 1065
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGV 1424
N PN + T S ++D + + CQ + RL P+ K + WE + DA+ V
Sbjct: 1066 TSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPFKKKKPTGPWEAWVMDAYTSAV 1125
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1126 SLSAT---GFYKTPNL--GYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVM 1180
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1181 DVGSSLNPAIDIGQVEGAFVQGLGLFTME-ELHYSPEGSLHT 1221
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 160/349 (45%), Gaps = 59/349 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A PG F
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCF 634
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ A+D+P N +F DE
Sbjct: 635 LTAEDVPNSNAT-----------------------------------------GLFNDET 653
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++EV G IIGA++AD + A AA+ VK+ Y D+ P + Q + + E
Sbjct: 654 VFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYEDL--PAIITIQDAINNNSFYGSE 711
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
+ K+E K FS N + G G Q H+ +E + VP +
Sbjct: 712 I-KIEKGDLKKGFSEADNV-------------VSGELYIGGQEHFYLETNCTIAVPKGEA 757
Query: 984 --VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
++++ ++Q Q VA +LG+P+NR+ V+ +R+GGG+G K +RS + A+ ++
Sbjct: 758 GEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAH 817
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSS 1090
+PVR ++ + M GGR+P A Y++G + + E FS+
Sbjct: 818 KTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSN 866
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 49/213 (23%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +SVNACL + A+TTVEG+G+ +K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFSCD 230
T E+E A GN+CRCTG+RPIL F++F+ D
Sbjct: 133 PTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEA 625
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 341 CGVCT-------VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSC 393
CG CT T+ + P V+ + F N+CRCTG+RPIL F++F+
Sbjct: 112 CGFCTPGIVMSMYTLLRNQPEPTVEEI-------ENAFQGNLCRCTGYRPILQGFRTFAK 164
Query: 394 D 394
D
Sbjct: 165 D 165
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 182/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G + L + G T + + + R + Y R
Sbjct: 842 FLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIRGTGRIC 901
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ P+ R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 902 KTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEG 961
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLF- 1309
S +Y R+ +E FN + N W+KRG+ + T F
Sbjct: 962 FTLPRCWDECIASSQYLARKREVEKFN---------------RENCWKKRGLCIIPTKFG 1006
Query: 1310 ---PLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
L F + A++ V+ D +V +T G E+GQGLHTK+ Q + L IP KI +
Sbjct: 1007 ISFTLPFLNQGGALVHVYT-DGSVLLTHGGTEMGQGLHTKMVQVASRALKIPTSKIHISE 1065
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGV 1424
N PN + T S ++D + + CQ + RL P+ K + WE + DA+ V
Sbjct: 1066 TSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPFKKKKPTGPWEAWVMDAYTSAV 1125
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1126 SLSAT---GFYKTPNL--GYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVM 1180
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1181 DVGSSLNPAIDIGQVEGAFVQGLGLFTME-ELHYSPEGSLHT 1221
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 160/349 (45%), Gaps = 59/349 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A PG F
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCF 634
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ A+D+P N +F DE
Sbjct: 635 LTAEDVPNSNAT-----------------------------------------GLFNDET 653
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++EV G IIGA++AD + A AA+ VK+ Y D+ P + Q + + E
Sbjct: 654 VFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYEDL--PAIITIQDAINNNSFYGSE 711
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
+ K+E K FS N + G G Q H+ +E + VP +
Sbjct: 712 I-KIEKGDLKKGFSEADNV-------------VSGELYIGGQEHFYLETNCTIAVPKGEA 757
Query: 984 --VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
++++ ++Q Q VA +LG+P+NR+ V+ +R+GGG+G K +RS + A+ ++
Sbjct: 758 GEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAH 817
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSS 1090
+PVR ++ + M GGR+P A Y++G + + E FS+
Sbjct: 818 KTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSN 866
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 49/213 (23%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +SVNACL + A+TTVEG+G+ +K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFSCD 230
T E+E A GN+CRCTG+RPIL F++F+ D
Sbjct: 133 PTVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E +V + R AKI SID++ A
Sbjct: 575 RPLPHLAANMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEA 625
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 341 CGVCT-------VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSC 393
CG CT T+ + P V+ + F N+CRCTG+RPIL F++F+
Sbjct: 112 CGFCTPGIVMSMYTLLRNQPEPTVEEI-------ENAFQGNLCRCTGYRPILQGFRTFAK 164
Query: 394 D 394
D
Sbjct: 165 D 165
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
Length = 762
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 272 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 331
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 332 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 391
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 392 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 436
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 437 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 555
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 556 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 610
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 611 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 651
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 61
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 62 V-------------------------------CFLSADDIPGSNET-------GLFNDET 83
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 84 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 140
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 141 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 187
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 188 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 247
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 248 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 279
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 55
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Quercetin
Length = 756
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 272 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 331
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 332 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 391
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 392 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 436
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 437 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 555
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 556 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 610
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 611 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 651
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 61
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 62 V-------------------------------CFLSADDIPGSNET-------GLFNDET 83
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 84 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 140
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 141 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 187
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 188 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 247
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 248 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 279
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 55
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With 2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With 2-Hydroxy-6-Methylpurine
Length = 763
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 273 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 332
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 333 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 392
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 393 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 437
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 438 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 496
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 497 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 556
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 557 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 611
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 612 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 652
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 6 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 62
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 63 V-------------------------------CFLSADDIPGSNET-------GLFNDET 84
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 85 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 141
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 142 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 188
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 189 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 248
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 249 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 280
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 6 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 56
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Indole-3- Aldehyde
Length = 755
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 272 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 331
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 332 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 391
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 392 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 436
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 437 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 555
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 556 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 610
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 611 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 651
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 61
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 62 V-------------------------------CFLSADDIPGSNET-------GLFNDET 83
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 84 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 140
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 141 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 187
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 188 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 247
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 248 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 279
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 55
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 842 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 901
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 902 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 961
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 962 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 1006
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 1007 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 1065
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 1066 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 1125
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1126 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 1180
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1181 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 1221
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 575 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 631
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 632 V-------------------------------CFLSADDIPGSNET-------GLFNDET 653
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 654 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 710
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 711 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 757
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 758 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 817
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 818 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 849
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 575 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 625
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 341 CGVCTV-TVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT V S + + +V D F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTVEEIED-AFQGNLCRCTGYRPILQGFRTFA 164
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 842 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 901
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 902 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 961
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 962 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 1006
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 1007 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 1065
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 1066 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 1125
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1126 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 1180
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1181 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 1221
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 575 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 631
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 632 V-------------------------------CFLSADDIPGSNET-------GLFNDET 653
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 654 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 710
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 711 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 757
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 758 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 817
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 818 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 849
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 575 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 625
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 341 CGVCTV-TVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT V S + + +V D F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTVEEIED-AFQGNLCRCTGYRPILQGFRTFA 164
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 841 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 900
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 901 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 960
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 961 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 1005
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 1006 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 1064
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 1065 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 1124
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 1125 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 1179
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 1180 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 1220
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 574 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 630
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 631 V-------------------------------CFLSADDIPGSNET-------GLFNDET 652
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 653 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 709
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 710 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 756
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 757 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 816
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 817 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 848
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 1 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 59
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 60 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 133 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 574 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 624
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 341 CGVCTV-TVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT V S + + +V D F N+CRCTG+RPIL F++F+
Sbjct: 112 CGFCTPGIVMSMYTLLRNQPEPTVEEIED-AFQGNLCRCTGYRPILQGFRTFA 163
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 184/402 (45%), Gaps = 53/402 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+L YK G K G I L + G + + + + R + Y R
Sbjct: 272 FLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLC 331
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFRG 1262
+T+ + R G + E+ M +A +VR N+ E D+ F Q+ G
Sbjct: 332 KTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG 391
Query: 1263 ------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
S +Y R+ ++ FN + N W+KRG+ + T F
Sbjct: 392 FSVPRCWDECLKSSQYYARKSEVDKFN---------------KENCWKKRGLCIIPTKFG 436
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
+ F + + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 437 ISFTVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISE 495
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V
Sbjct: 496 TSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRV 555
Query: 1425 DLQVTKSVSSQQTPDLLPMYTIPT------------AAATEVEVDLLTGQHQILRVDILE 1472
L T +TP+L Y+ T A +EVE+D LTG H+ LR DI+
Sbjct: 556 SLSTT---GFYRTPNL--GYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVM 610
Query: 1473 DTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
D G S+NPAIDIGQ++GAF+ G+GL+T E ++H G+L T
Sbjct: 611 DVGSSLNPAIDIGQVEGAFVQGLGLFTLE-ELHYSPEGSLHT 651
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 59/332 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG F
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPG---F 61
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
V F+ A DIPG N +F DE
Sbjct: 62 V-------------------------------CFLSADDIPGSNET-------GLFNDET 83
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 84 VFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPA-IITIEDAIKN--NSFYGS 140
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPS-ED 982
K+E K FS N + G G Q H+ +E + +P E+
Sbjct: 141 ELKIEKGDLKKGFSEADNV-------------VSGELYIGGQDHFYLETHCTIAIPKGEE 187
Query: 983 G-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN 1041
G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+ +
Sbjct: 188 GEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAY 247
Query: 1042 VINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
PVR ++ M GGR+P A Y++G
Sbjct: 248 KTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 279
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLA 720
+PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 5 RPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEA 55
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
Length = 777
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 220/813 (27%), Positives = 328/813 (40%), Gaps = 167/813 (20%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
KPLP A G+A Y++DLP PA +TL LA+
Sbjct: 5 KPLPHDSARAHVTGQARYLDDLPC---------------PA------NTLHLAF------ 37
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
G + AA G E + PGV A D+P N A PA P E
Sbjct: 38 -------GLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSP------EP 84
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+ A EV F GQ I + A + ++A AA+ ++ Y+ P+ I + Q
Sbjct: 85 VLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA----PRPAILTLDQ--------- 131
Query: 924 MFKLEPTATKSKF--SPDSNARWEILEA-GKKLFKIKGAAEFGPQYHYTMEGQTALCVPS 980
A S+F P AR ++ A +G E G Q H+ +EGQ AL +P+
Sbjct: 132 -----ALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPA 186
Query: 981 EDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCS 1040
E GV I+ +SQ + +Q VA LGL + V V+ RR+GGG+G K S+ + A+ AV +
Sbjct: 187 EGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKQSQGNHLAIACAVAA 246
Query: 1041 NVINKPVRIVMSIESMMGALGGRYPVYATYEIGT-IGGNLSIKHEHPEFSSDVFLLLEVV 1099
+P ++ + M G R+ Y IG G L +D F+ L
Sbjct: 247 RATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKL--------LGAD-FVHLARC 297
Query: 1100 GATITIRDTFGLEQTVSPEEYLSIDMNKKVITYITFCPLIK-NSYYLRTYKCGVDKNGVI 1158
G + L V L D + F P ++ S+ LRT N
Sbjct: 298 GWSAD------LSLPVCDRAMLHADGSY-------FVPALRIESHRLRT---NTQSNTAF 341
Query: 1159 QNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDKPTY-GFTRSPG 1217
+ F +G E H+ G+G+ DP+ R + D P G + P
Sbjct: 342 RG----FGGPQGALGMERAIEHLARGMGR----DPAELRALNF---YDPPERGGLSAPPS 390
Query: 1218 ACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFN 1277
E A + H V D + L + + S + RR I +N
Sbjct: 391 PPEPIATKKTQTTHYGQEV----ADCVLGEL--------VTRLQKSANFTTRRAEIAAWN 438
Query: 1278 AVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF----YDVSYAILSVFRRDATVAIT 1333
+ NR RGI+ F + F + + A++ ++ D +VA+
Sbjct: 439 S---------------TNRTLARGIALSPVKFGISFTLTHLNQAGALVQIY-TDGSVALN 482
Query: 1334 TSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILL 1393
G E+GQGLH K+ Q A LGI ++ + + PN + T S+ +D +
Sbjct: 483 HGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKD 542
Query: 1394 CCQELKTRLMPYM-------------------DKGKSWE--KTISDAFERGVDLQVT--- 1429
C+ L+ RL ++ GKSW + ++ A+ + L T
Sbjct: 543 ACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFY 602
Query: 1430 -------KSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAI 1482
+ Q P L Y AA TEV +D LTG+++ILR DIL D G S+NPA+
Sbjct: 603 ATPKLSWDRLRGQGRPFLYFAY---GAAITEVVIDRLTGENRILRTDILHDAGASLNPAL 659
Query: 1483 DIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
DIGQI+GA++ G G T E + D G L+T+
Sbjct: 660 DIGQIEGAYVQGAGWLTTEELVWD-HCGRLMTH 691
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 220/813 (27%), Positives = 328/813 (40%), Gaps = 167/813 (20%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
KPLP A G+A Y++DLP PA +TL LA+
Sbjct: 5 KPLPHDSARAHVTGQARYLDDLPC---------------PA------NTLHLAF------ 37
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
G + AA G E + PGV A D+P N A PA P E
Sbjct: 38 -------GLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSP------EP 84
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+ A EV F GQ I + A + ++A AA+ ++ Y+ P+ I + Q
Sbjct: 85 VLATGEVHFVGQPIFLVAATSHRAARIAARKARITYA----PRPAILTLDQ--------- 131
Query: 924 MFKLEPTATKSKF--SPDSNARWEILEA-GKKLFKIKGAAEFGPQYHYTMEGQTALCVPS 980
A S+F P AR ++ A +G E G Q H+ +EGQ AL +P+
Sbjct: 132 -----ALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPA 186
Query: 981 EDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCS 1040
E GV I+ +SQ + +Q VA LGL + V V+ RR+GGG+G K S+ + A+ AV +
Sbjct: 187 EGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAA 246
Query: 1041 NVINKPVRIVMSIESMMGALGGRYPVYATYEIGT-IGGNLSIKHEHPEFSSDVFLLLEVV 1099
+P ++ + M G R+ Y IG G L +D F+ L
Sbjct: 247 RATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKL--------LGAD-FVHLARC 297
Query: 1100 GATITIRDTFGLEQTVSPEEYLSIDMNKKVITYITFCPLIK-NSYYLRTYKCGVDKNGVI 1158
G + L V L D + F P ++ S+ LRT N
Sbjct: 298 GWSAD------LSLPVCDRAMLHADGSY-------FVPALRIESHRLRT---NTQSNTAF 341
Query: 1159 QNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDKPTY-GFTRSPG 1217
+ F +G E H+ G+G+ DP+ R + D P G + P
Sbjct: 342 RG----FGGPQGALGMERAIEHLARGMGR----DPAELRALNF---YDPPERGGLSAPPS 390
Query: 1218 ACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFN 1277
E A + H V D + L + + S + RR I +N
Sbjct: 391 PPEPIATKKTQTTHYGQEV----ADCVLGEL--------VTRLQKSANFTTRRAEIAAWN 438
Query: 1278 AVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF----YDVSYAILSVFRRDATVAIT 1333
+ NR RGI+ F + F + + A++ ++ D +VA+
Sbjct: 439 S---------------TNRTLARGIALSPVKFGISFTLTHLNQAGALVQIY-TDGSVALN 482
Query: 1334 TSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILL 1393
G E+GQGLH K+ Q A LGI ++ + + PN + T S+ +D +
Sbjct: 483 HGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKD 542
Query: 1394 CCQELKTRLMPYM-------------------DKGKSWE--KTISDAFERGVDLQVT--- 1429
C+ L+ RL ++ GKSW + ++ A+ + L T
Sbjct: 543 ACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFY 602
Query: 1430 -------KSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAI 1482
+ Q P L Y AA TEV +D LTG+++ILR DIL D G S+NPA+
Sbjct: 603 ATPKLSWDRLRGQGRPFLYFAY---GAAITEVVIDRLTGENRILRTDILHDAGASLNPAL 659
Query: 1483 DIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
DIGQI+GA++ G G T E + D G L+T+
Sbjct: 660 DIGQIEGAYVQGAGWLTTEELVWD-HCGRLMTH 691
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 171/384 (44%), Gaps = 42/384 (10%)
Query: 1145 LRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVR 1204
L YK G NG I+ ++ G T +++ + L + Y RV +
Sbjct: 848 LGKYKIGFMNNGKIKAADIQLYINGGCTPDDSELVIEYALLKLENAYKIPNLRVRGRVCK 907
Query: 1205 TDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL-RNEDVKKFYQQFRGS 1263
T+ P+ R G + E M +A P VR N+ R D Q+F +
Sbjct: 908 TNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCRLPPEKVRELNMYRTIDRTIHNQEFDPT 967
Query: 1264 ------------VKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPL 1311
Y R+ A++ FN Q W+KRGI+ + F +
Sbjct: 968 NLLQCWEACVENSSYYNRKKAVDEFN---------------QQRFWKKRGIAIIPMKFSV 1012
Query: 1312 GFYDVSY---AILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQ 1368
GF Y A L D +V + G+E+GQG++TK+ Q + EL IP+ I L
Sbjct: 1013 GFPKTFYYQAAALVQIYTDGSVLVAHGGVELGQGINTKMIQVASRELKIPMSYIHLDEMS 1072
Query: 1369 NNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKS--WEKTISDAFERGVDL 1426
PN TG ST +D R + CQ L RL P + + S WE+ + +AF + + L
Sbjct: 1073 TVTVPNTVTTGASTGADVNGRAVQNACQILMKRLEPIIKQNPSGTWEEWVKEAFVQSISL 1132
Query: 1427 QVTKSVSSQQTP--------DLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSI 1478
T Q D+ P Y + AA +EVE+D LTG H+ +R DI+ D SI
Sbjct: 1133 SATGYFRGYQADMDWEKGEGDIFP-YFVFGAACSEVEIDCLTGAHKNIRTDIVMDGSFSI 1191
Query: 1479 NPAIDIGQIQGAFIMGIGLWTFEH 1502
NPA+DIGQI+GAF+ G+GL+T E
Sbjct: 1192 NPAVDIGQIEGAFVQGLGLYTLEE 1215
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 168/349 (48%), Gaps = 62/349 (17%)
Query: 728 QGSEDFETKQNLW-PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKI 786
Q +D + +Q L P+ +P+ I GEA + +D+ L E F +VV + + AKI
Sbjct: 565 QSFQDVDFQQPLQDPIGRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSHAKI 624
Query: 787 QSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGK 846
S+D++ ALA GV D+ V A+D+PG
Sbjct: 625 ISLDASEALASLGV------VDV----------------------------VTARDVPGD 650
Query: 847 NLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPK 906
N G+ E+E L+A++EV GQI+ A+ AD++ A +AAK VK+VY D++
Sbjct: 651 N--------GR--EEESLYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVYQDIEPMI 700
Query: 907 LDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQY 966
+ ++ +Q ++ I KLE + F +ILE G G Q
Sbjct: 701 VTVQDALQY--ESFIGPERKLEQGNVEEAF----QCADQILE---------GEVHLGGQE 745
Query: 967 HYTMEGQTALCVPS-EDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGA 1024
H+ ME Q+ VP ED +DIY +SQ QE VA LG+P NR+N +R+GG +G
Sbjct: 746 HFYMETQSVRVVPKGEDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGG 805
Query: 1025 KLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
K S+ A +AAV + +P+R ++ M GGR+P+ Y+IG
Sbjct: 806 KASKPGLLASVAAVAAQKTGRPIRFILERRDDMLITGGRHPLLGKYKIG 854
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 105/221 (47%), Gaps = 49/221 (22%)
Query: 16 SDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSS 75
S S + F +NG + P L+ ++R RL GTKY C G CG CTV ++
Sbjct: 4 SKESDELIFFVNGK-KVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRY 62
Query: 76 HPVTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSP 135
P++ S +S ACLV + G A+TTVEG+GS K H VQ R+A +G+QCG+C+P
Sbjct: 63 DPISKRISHFSATACLVPICSLHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTP 122
Query: 136 GMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKK 195
GMVM++Y+ R
Sbjct: 123 GMVMSIYTLLR-----------------------------------------------NH 135
Query: 196 YKVTKSEVEGALGGNICRCTGFRPILDAFQSFSCDASDSVQ 236
+ + ++ LGGN+CRCTG+RPI+++ +SF C +S Q
Sbjct: 136 PEPSTEQIMETLGGNLCRCTGYRPIVESAKSF-CPSSTCCQ 175
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 654 QGSEDFETKQNLW-PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKI 712
Q +D + +Q L P+ +P+ I GEA + +D+ L E F +VV + + AKI
Sbjct: 565 QSFQDVDFQQPLQDPIGRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSHAKI 624
Query: 713 QSIDSTLALVS 723
S+D++ AL S
Sbjct: 625 ISLDASEALAS 635
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 26/112 (23%)
Query: 341 CGVCT-------VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSC 393
CG CT T+ +HP + N+CRCTG+RPI+++ +SF C
Sbjct: 117 CGFCTPGMVMSIYTLLRNHPEPSTEQIMET-------LGGNLCRCTGYRPIVESAKSF-C 168
Query: 394 DASDSVQRKCADIEVRGKRDFISHEGLPEPEYDPTYRKNLAVSLFYKSHINP 445
+S C + GK L E + +P + ++ L+ K P
Sbjct: 169 PSS-----TCCQMNGEGKC------CLDEEKNEPERKNSVCTKLYEKKEFQP 209
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 292 SDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSS 351
S S + F +NG + P L+ ++R RL GTKY C G CG CTV ++
Sbjct: 4 SKESDELIFFVNG-KKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRY 62
Query: 352 HPVTGVDSTYSVNAC 366
P++ S +S AC
Sbjct: 63 DPISKRISHFSATAC 77
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 341 CGVCTV-TVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT V S + + +V D F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTVEEIED-AFQGNLCRCTGYRPILQGFRTFA 164
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 1 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 59
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 60 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 133 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 371 FTRNICRCTGFRPILDAFQSFS 392
F N+CRCTG+RPIL F++F+
Sbjct: 142 FQGNLCRCTGYRPILQGFRTFA 163
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG ++ P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNG-KKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYK 197
VM+MY+ R + +
Sbjct: 121 VMSMYTLLR-----------------------------------------------NQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 134 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 341 CGVCTV-TVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT V S + + +V D F N+CRCTG+RPIL F++F+
Sbjct: 113 CGFCTPGIVMSMYTLLRNQPEPTVEEIED-AFQGNLCRCTGYRPILQGFRTFA 164
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 84.7 bits (208), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 84/204 (41%), Gaps = 59/204 (28%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ TING + + A V P T L+ FIR+ L G C CG CTV +
Sbjct: 6 IELTING--HPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDG------- 56
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
SV +C + G +ITT+EG+ + +Q M+G QCGYC+PGM+M
Sbjct: 57 ---MSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIM-- 111
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKS 201
HR LLQ + T++
Sbjct: 112 -RSHR---------------LLQ-----------------------------ENPSPTEA 126
Query: 202 EVEGALGGNICRCTGFRPILDAFQ 225
E+ +GGN+CRCTG++ I+ A Q
Sbjct: 127 EIRFGIGGNLCRCTGYQNIVKAIQ 150
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTV 346
+ TING + + A V P T L+ FIR+ L G C CG CTV
Sbjct: 6 IELTING--HPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTV 52
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 59/200 (29%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ F +NG + E P + L++++R L GTK C EG CG CTV + +
Sbjct: 3 IAFLLNGETRRVRIEDPTQS-LLEWLRAEG-LTGTKEGCNEGDCGACTVMIRDAA----- 55
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
+ +VNACL+++ G A+ T+EG+ + H VQ + +GSQCG+C+PG +++M
Sbjct: 56 -GSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSM 114
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKS 201
+ + +
Sbjct: 115 AA---------------------------------------------------AHDRDRK 123
Query: 202 EVEGALGGNICRCTGFRPIL 221
+ + L GN+CRCTG+ PIL
Sbjct: 124 DYDDLLAGNLCRCTGYAPIL 143
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 48/143 (33%), Gaps = 57/143 (39%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSS------ 351
+ F +NG + E P + L++++R L GTK C EG CG CTV + +
Sbjct: 3 IAFLLNGETRRVRIEDPTQS-LLEWLRAEG-LTGTKEGCNEGDCGACTVMIRDAAGSRAV 60
Query: 352 ----------------------------HPVTGVDSTYSVNACG---------------- 367
HPV + + CG
Sbjct: 61 NACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDR 120
Query: 368 -----DRCFTRNICRCTGFRPIL 385
D N+CRCTG+ PIL
Sbjct: 121 DRKDYDDLLAGNLCRCTGYAPIL 143
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 59/200 (29%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ F +NG + E P + L++ +R L GTK C EG CG CTV + +
Sbjct: 3 IAFLLNGETRRVRIEDPTQS-LLELLRAEG-LTGTKEGCNEGDCGACTVMIRDAA----- 55
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
+ +VNACL+++ G A+ T+EG+ + H VQ + +GSQCG+C+PG +++M
Sbjct: 56 -GSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSM 114
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKS 201
+ + +
Sbjct: 115 AA---------------------------------------------------AHDRDRK 123
Query: 202 EVEGALGGNICRCTGFRPIL 221
+ + L GN+CRCTG+ PIL
Sbjct: 124 DYDDLLAGNLCRCTGYAPIL 143
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 57/143 (39%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSS------ 351
+ F +NG + E P + L++ +R L GTK C EG CG CTV + +
Sbjct: 3 IAFLLNGETRRVRIEDPTQS-LLELLRAEG-LTGTKEGCNEGDCGACTVMIRDAAGSRAV 60
Query: 352 ----------------------------HPVTGVDSTYSVNACG---------------- 367
HPV + + CG
Sbjct: 61 NACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDR 120
Query: 368 -----DRCFTRNICRCTGFRPIL 385
D N+CRCTG+ PIL
Sbjct: 121 DRKDYDDLLAGNLCRCTGYAPIL 143
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 73.9 bits (180), Expect = 6e-13, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 60/205 (29%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+R T+NG VP L+D++R+ L GTK C G CG CTV V +
Sbjct: 5 LRLTLNGRAR--EDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL--- 59
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
AC L H G + TVE L ++ +Q G+QCG+C+PGM+MA
Sbjct: 60 -------ACSTLAHQVAGKKVETVESLATQGT-LSKLQAAFHEKLGTQCGFCTPGMIMAS 111
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKS 201
+ R S ++
Sbjct: 112 EALLRKNPSP-----------------------------------------------SRD 124
Query: 202 EVEGALGGNICRCTGFRPILDAFQS 226
E++ AL GN+CRCTG+ I+ + ++
Sbjct: 125 EIKAALAGNLCRCTGYVKIIKSVET 149
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV--------- 348
+R T+NG VP L+D++R+ L GTK C G CG CTV V
Sbjct: 5 LRLTLNGRAR--EDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRLACS 62
Query: 349 TSSHPVTG 356
T +H V G
Sbjct: 63 TLAHQVAG 70
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 73/189 (38%), Gaps = 58/189 (30%)
Query: 37 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLVLVHM 96
V P T L+ F+R+ L G C CG CTV + SV +C L
Sbjct: 19 VEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGR----------SVKSCTHLAVQ 68
Query: 97 CGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHN 156
C G + TVEGL +K H VQ +G QCG+C+PGM+M Y
Sbjct: 69 CDGSEVLTVEGLANKGV-LHAVQEGFYKEHGLQCGFCTPGMLMRAYR------------- 114
Query: 157 FTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKSEVEGALGGNICRCTG 216
FL + T++E+ + GN+CRCTG
Sbjct: 115 ------------FLQ----------------------ENPNPTEAEIRMGMTGNLCRCTG 140
Query: 217 FRPILDAFQ 225
++ I+ A Q
Sbjct: 141 YQNIVKAVQ 149
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 313 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
V P T L+ F+R+ L G C CG CTV +
Sbjct: 19 VEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI 54
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 60/199 (30%)
Query: 25 TINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDST 84
TING + E P L D +R+ L GTK C +G CG CT+ + +
Sbjct: 15 TINGKPRVFYVE--PRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA--------- 63
Query: 85 YSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSR 144
+ +CL L G +I TVEGL +K + +Q + QCG+C+ GM+
Sbjct: 64 -PMRSCLTLAVQAEGCSIETVEGLSQGEK-LNALQDSFRRHHALQCGFCTAGMLA----- 116
Query: 145 HRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTKSEVE 204
TA ++ N ++ EV
Sbjct: 117 ---TARSILAENPAP---------------------------------------SRDEVR 134
Query: 205 GALGGNICRCTGFRPILDA 223
+ GN+CRCTG+ I+DA
Sbjct: 135 EVMSGNLCRCTGYETIIDA 153
Score = 37.7 bits (86), Expect = 0.054, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 48/141 (34%), Gaps = 56/141 (39%)
Query: 301 TINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV------------ 348
TING + E P L D +R+ L GTK C +G CG CT+ +
Sbjct: 15 TINGKPRVFYVE--PRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLA 72
Query: 349 -----TSSHPVTGVDSTYSVNACGD--------RC------------------------- 370
S V G+ +NA D +C
Sbjct: 73 VQAEGCSIETVEGLSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDE 132
Query: 371 ----FTRNICRCTGFRPILDA 387
+ N+CRCTG+ I+DA
Sbjct: 133 VREVMSGNLCRCTGYETIIDA 153
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 138/380 (36%), Gaps = 44/380 (11%)
Query: 1140 KNSYYLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVV 1199
K S + T + D+ G I + T ++VD G L +R + Y + R
Sbjct: 461 KRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGT 520
Query: 1200 ANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQ 1259
V T+ R GA E E +MD +A + DP ++R N E
Sbjct: 521 GRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREG------D 574
Query: 1260 FRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF--YDVS 1317
S + E E F+ +R + R ++ KRG+ + ++ G D S
Sbjct: 575 TTSSGQIPEVMSLPEMFDKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDGPDTS 634
Query: 1318 YAILSVFRRDATVAITTSGIEIGQGLHTK---VAQACAYELGIPIEKIVLKPAQNNIFPN 1374
A + D +V + S + GQG A LGI E I L + PN
Sbjct: 635 EAWVE-LNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPN 693
Query: 1375 AANTGGSTASDNAARCILLCCQ-----------------ELKTRLMPYMDKGKSWEKTIS 1417
+ GGS + I + C+ E+K P GK W
Sbjct: 694 SGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGK-WTAPAK 752
Query: 1418 DAFERGVDLQVTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQS 1477
D +G Q +P MY + TEV V++ TG+ + ++ + D G+
Sbjct: 753 DCDAKG-----------QGSPFACYMYGL---FLTEVAVEVATGKATVEKMVCVADIGKI 798
Query: 1478 INPAIDIGQIQGAFIMGIGL 1497
N + GQI G G+GL
Sbjct: 799 CNKLVVDGQIYGGLAQGVGL 818
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 37 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLV-LVH 95
V P LVD +R +L K C +G CG CTV + V AC++ +
Sbjct: 17 VSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK----------VVRACIIKMSR 66
Query: 96 MCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
+ ++TT+EG+G+ H +Q +QCG+C+PG +++
Sbjct: 67 VAENASVTTLEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIVS 110
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 41/132 (31%), Gaps = 57/132 (43%)
Query: 313 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSS--------------------- 351
V P LVD +R +L K C +G CG CTV +
Sbjct: 17 VSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTL 76
Query: 352 ---------HPVTGVDSTYSVNACG--------------------DRCFTRN-------I 375
HP+ + CG R R+ I
Sbjct: 77 EGIGAPDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNI 136
Query: 376 CRCTGFRPILDA 387
CRCTG++P++DA
Sbjct: 137 CRCTGYKPLVDA 148
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 33/153 (21%)
Query: 746 LPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADR--GPAKIQSIDSTLALAYPGVHTF 803
+P+ A+ + G AE+ D E + LA A I+ ID++ A PGV+
Sbjct: 180 IPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKV 239
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ KD+ GKN G+ TF K W I D K
Sbjct: 240 LTHKDVKGKNRIT----------------GLITFPTNKG---------DGWERPILNDSK 274
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVK 896
+F G + + AD+ +A AA+ VK
Sbjct: 275 IFQ------YGDALAIVCADSEANARAAAEKVK 301
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 14/14 (100%)
Query: 210 NICRCTGFRPILDA 223
NICRCTG++P++DA
Sbjct: 135 NICRCTGYKPLVDA 148
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 76/205 (37%), Gaps = 60/205 (29%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
T+ +NG I E P RL+D +R+ L K C EG CG CTV + + PVT
Sbjct: 5 TINLNLNGEARSIVTE--PNKRLLDLLREDFGLTSVKEGCSEGECGACTV-IFNGDPVT- 60
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
C +L I T+EG+ K +Q QCGYC+PGM+
Sbjct: 61 --------TCCMLAGQADESTIITLEGVAEDGKPSL-LQQCFLEAGAVQCGYCTPGMI-- 109
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPXXXXXXXXXXXXXXXXXXXXGKKYKVTK 200
LTA K LL K T
Sbjct: 110 ------LTA---------KALL------------------------------DKNPDPTD 124
Query: 201 SEVEGALGGNICRCTGFRPILDAFQ 225
E+ A+ GN+CRCTG+ I A +
Sbjct: 125 EEITVAMSGNLCRCTGYIKIHAAVR 149
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 355
T+ +NG I E P RL+D +R+ L K C EG CG CTV + + PVT
Sbjct: 5 TINLNLNGEARSIVTE--PNKRLLDLLREDFGLTSVKEGCSEGECGACTV-IFNGDPVT 60
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 43 LVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLV-LVHMCGGWA 101
L D +R L G K C +G CG C+V + V AC+ + + G
Sbjct: 23 LSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK----------VVRACVTKMKRVADGAQ 72
Query: 102 ITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
ITT+EG+G + + H +Q G+QCG+CSPG +++
Sbjct: 73 ITTIEGVG-QPENLHPLQKAWVLHGGAQCGFCSPGFIVS 110
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 137/381 (35%), Gaps = 44/381 (11%)
Query: 1140 KNSYYLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVV 1199
K S + K K+G + + + + VD G L +R + Y+ R +
Sbjct: 459 KRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGL 518
Query: 1200 ANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN-LRNEDVKKFYQ 1258
V T+ R GA + E +MD +A + DP ++R N R D Q
Sbjct: 519 GRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTNPTGQ 578
Query: 1259 QFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF--YDV 1316
+ E + + +R + ++ K+G+ + ++ G D
Sbjct: 579 E-------PEVFSLPDMIDQLRPKYQAALEKAQKESTATHKKGVGISIGVYGSGLDGPDA 631
Query: 1317 SYAILSVFRRDATVAITTSGIEIGQGLH---TKVAQACAYELGIPIEKIVLKPAQNNIFP 1373
S A + D T+ + T+ + GQG A +G+ EKI P
Sbjct: 632 SEA-WAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTP 690
Query: 1374 NAANTGGSTASDNAARCILLCCQ-----------------ELKTRLMPYMDKGKSWEKTI 1416
N+ +GGS I + C+ ELK P G +W T
Sbjct: 691 NSGPSGGSRQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITG-NW--TA 747
Query: 1417 SDAFERGVDLQVTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQ 1476
S A +V+ P ++ MY + A EV VD+ TGQ + + ++ D G
Sbjct: 748 SGATH-------CDAVTGLGKPFVVYMYGVFMA---EVTVDVATGQTTVDGMTLMADLGS 797
Query: 1477 SINPAIDIGQIQGAFIMGIGL 1497
N GQI G GIGL
Sbjct: 798 LCNQLATDGQIYGGLAQGIGL 818
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 156/396 (39%), Gaps = 79/396 (19%)
Query: 747 PKIDAITQCAGEAEYVNDL--PQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFV 804
P+ A+ + G +Y DL + ++V A A I+ ID++ AL PGVH+ +
Sbjct: 181 PRPTAVAKVTGTLDYGADLGLKMPAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVI 240
Query: 805 HAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKL 864
KD+ GKN G+ TF K W I DEK+
Sbjct: 241 THKDVKGKNRIT----------------GLITFPTNKG---------DGWDRPILCDEKV 275
Query: 865 FAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQI--VQDGDKARIV 922
F G I + AD+ +A AA+ VKV D++++ G A
Sbjct: 276 FQY------GDCIALVCADSEANARAAAEKVKV----------DLEELPAYMSGPAAAAE 319
Query: 923 EMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAE--------FGPQYHYTMEGQT 974
+ ++ P F + + G+ I +A+ G Q H +E
Sbjct: 320 DAIEIHPGTPNVYFE-------QPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDV 372
Query: 975 ALCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPA 1033
A +DG I++ S V L +A +GL +++ + +GG +G K S +
Sbjct: 373 AFAYMGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTS--E 430
Query: 1034 VIAAVCSNVINKPVRIVMSIESMMGALGGRYP-----VYATYEIGTIGGNLSIKH----E 1084
+ AV + +PV + + + G R P +A + GT+ L+++ +
Sbjct: 431 ALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTL---LAMESDWLVD 487
Query: 1085 HPEFS--SDVFLL--LEVVGATITIRDTFGLEQTVS 1116
H +S D+ L + +GA I + GL +TV+
Sbjct: 488 HGPYSEFGDLLTLRGAQFIGAGYNIPNIRGLGRTVA 523
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 373 RNICRCTGFRPILDA 387
RN CRCTG++P++DA
Sbjct: 134 RNACRCTGYKPLVDA 148
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 31/217 (14%)
Query: 1327 DATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDN 1386
D + + +IGQG T +AQ A ELG+ EKI + + P+ T S +
Sbjct: 33 DGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLI 92
Query: 1387 AARCILLCCQELKTRL--------------MPYMDKG----KSWEKTIS-----DAFERG 1423
++L C++ K L + + D E++++ A +
Sbjct: 93 TGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAA 152
Query: 1424 VDLQVTKSVSSQQTPDLLP--MYTIP------TAAATEVEVDLLTGQHQILRVDILEDTG 1475
+ V + T L P M IP EVEVD TG+ +L+V D G
Sbjct: 153 GRMAVGAGSYNPNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVG 212
Query: 1476 QSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGAL 1512
IN ++ GQI+G MG G E + + GA+
Sbjct: 213 TPINRSMVEGQIEGGVTMGQGFVLMEEIEVNTKNGAI 249
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of The
Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of The
Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 133/338 (39%), Gaps = 50/338 (14%)
Query: 1220 EVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFNAV 1279
E IE ++D +A +N D ++R N ++K +QF + ++ D+ + A+
Sbjct: 391 EAVYLIERMVDVLAQKLNMDKAEIRAKNF----IRK--EQFPYTTQFGFEYDSGDYHTAL 444
Query: 1280 RVLISQYSLRHCFQNNRWRKRGISAVVTLFPLG---FYDVSYA-------ILSVFRRDA- 1328
+ ++ + + +R TL +G F +V A IL V D+
Sbjct: 445 KKVLDAVDYP-ALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSC 503
Query: 1329 TVAITTSGIEI--------GQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGG 1380
+ I +G I GQG T AQ A ELGIP E I ++ + P T G
Sbjct: 504 EIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYG 563
Query: 1381 STAS-------DNAARCILLCCQELKTRLMPYMDKGKSWE------KTISDAFERGVDL- 1426
S ++ AAR I +++ ++ + WE K F+ D+
Sbjct: 564 SRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIA 623
Query: 1427 -QVTKSVSSQQTPDL-------LPMYTIPTAA-ATEVEVDLLTGQHQILRVDILEDTGQS 1477
Q + P L P +T P V++D TG+ ++ R L+D G
Sbjct: 624 WQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTR 683
Query: 1478 INPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
INP I GQI G G + + D + G LL N
Sbjct: 684 INPMIIEGQIHGGLTEGYAVAMGQQMPFDAQ-GNLLGN 720
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 16/231 (6%)
Query: 830 AYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAY 889
A PGVH + A+D+ L G + + A+ +V F Q + +IAD+ A
Sbjct: 71 AMPGVHAVLTAEDLKPLKLHWMPTLAGDV---AAVLADEKVHFQMQEVAIVIADDRYIAA 127
Query: 890 EAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEA 949
+A + VKV Y ++ I + D R ++ A + + W +
Sbjct: 128 DAVEAVKVEYDELPVVIDPIDALKPDAPVLR-EDLAGKTSGAHGPREHHNHIFTWGAGDK 186
Query: 950 GKKLFKIKGAAEFGPQYHY-----TMEGQTALCVPSEDGVD----IYAASQWVTLVQESV 1000
A Q+ Y +T CV S D + Y SQ +V+ V
Sbjct: 187 AATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVV 246
Query: 1001 AGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPA-VIAAVCSNVINKPVRIV 1050
+ + G+P ++V + + IGGG+G K+ YP V A V S V+ +PV+ V
Sbjct: 247 SMLSGIPESKVRIVSPDIGGGFGNKV--GIYPGYVCAIVASIVLGRPVKWV 295
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 132/314 (42%), Gaps = 53/314 (16%)
Query: 748 KIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAK 807
+++ I G+ YV+D+ +L F V + A+I+SID++ A
Sbjct: 27 RVEDIRFTQGKGNYVDDV-KLPGMLFGDFVRSSHAHARIKSIDTSKA------------- 72
Query: 808 DIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAE 867
KA PGV + A D+ NL G + + + A+
Sbjct: 73 ---------------------KALPGVFAVLTAADLKPLNLHYMPTLAGDV---QAVLAD 108
Query: 868 NEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKL 927
+V F Q + ++A + A +A ++V+V Y + P L + D + E K
Sbjct: 109 EKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPL--PVLVDPFKAMEPDAPLLREDIKD 166
Query: 928 EPT-ATKSKFSPDSNARWEI--LEAGKKLF-KIKGAAEFGPQYHYTMEG--QTALCVPSE 981
+ T A ++ + RWEI E F K + ++ YH +T CV S
Sbjct: 167 KMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASM 226
Query: 982 DGVD----IYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKL-SRSCYPAVIA 1036
D + ++ Q +++ V+ + GLP ++++V IGGG+G K+ + S Y V A
Sbjct: 227 DKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGY--VCA 284
Query: 1037 AVCSNVINKPVRIV 1050
V S V+ PV+ V
Sbjct: 285 VVASIVLGVPVKWV 298
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 138/354 (38%), Gaps = 52/354 (14%)
Query: 1191 YDPSTFRVVANAVRTDKPTYG--FTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL 1248
YD + + V T+K + G + S E IE ++ +A + D D+RI N
Sbjct: 363 YDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNF 422
Query: 1249 RNEDVKKF-----YQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKR--- 1300
+ + ++ G+ ++ A++T ++ Q + + F+ R+
Sbjct: 423 IQPEQFPYMAPLGWEYDSGNYPLAMKK-AMDTVGYHQLRAEQKAKQEAFKRGETREIMGI 481
Query: 1301 GISAVVTLFPLGFYDVSYAILSVFRRD-ATVAITTSGIEI--------GQGLHTKVAQAC 1351
GIS + G + IL V D A + I +G I GQG T AQ
Sbjct: 482 GISFFTEIVGAG-PSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQII 540
Query: 1352 AYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAA-------RCILLCCQELKTRLMP 1404
A ELGIP + I+++ + P T GS ++ A R I Q + ++
Sbjct: 541 ATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLE 600
Query: 1405 YMDKGKSWE------KTISDAFERGVDLQVTKSVSSQQTPDLLP------MYTIPT---- 1448
+ W+ K + + F+ +L S P+L P Y P
Sbjct: 601 VHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSP--PPNLEPGLEAVNYYDPPNMTYP 658
Query: 1449 --AAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQG----AFIMGIG 1496
A +++D+ TG + R L+D G INP I GQ+ G AF + +G
Sbjct: 659 FGAYFCIMDIDIDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMG 712
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 132/314 (42%), Gaps = 53/314 (16%)
Query: 748 KIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAK 807
+++ I G+ YV+D+ +L F V + A+I+SID++ A
Sbjct: 27 RVEDIRFTQGKGNYVDDV-KLPGMLFGDFVRSSHAHARIKSIDTSKA------------- 72
Query: 808 DIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAE 867
KA PGV + A D+ NL G + + + A+
Sbjct: 73 ---------------------KALPGVFAVLTAADLKPLNLHYMPTLAGDV---QAVLAD 108
Query: 868 NEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKL 927
+V F Q + ++A + A +A ++V+V Y + P L + D + E K
Sbjct: 109 EKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPL--PVLVDPFKAMEPDAPLLREDIKD 166
Query: 928 EPT-ATKSKFSPDSNARWEI--LEAGKKLF-KIKGAAEFGPQYHYTMEG--QTALCVPSE 981
+ T A ++ + RWEI E F K + ++ YH +T CV S
Sbjct: 167 KMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASM 226
Query: 982 DGVD----IYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKL-SRSCYPAVIA 1036
D + ++ Q +++ V+ + GLP ++++V IGGG+G K+ + S Y V A
Sbjct: 227 DKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGY--VCA 284
Query: 1037 AVCSNVINKPVRIV 1050
V S V+ PV+ V
Sbjct: 285 VVASIVLGVPVKWV 298
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 138/354 (38%), Gaps = 52/354 (14%)
Query: 1191 YDPSTFRVVANAVRTDKPTYG--FTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL 1248
YD + + V T+K + G + S E IE ++ +A + D D+RI N
Sbjct: 363 YDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNF 422
Query: 1249 RNEDVKKF-----YQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKR--- 1300
+ + ++ G+ ++ A++T ++ Q + + F+ R+
Sbjct: 423 IQPEQFPYMAPLGWEYDSGNYPLAMKK-AMDTVGYHQLRAEQKAKQEAFKRGETREIMGI 481
Query: 1301 GISAVVTLFPLGFYDVSYAILSVFRRD-ATVAITTSGIEI--------GQGLHTKVAQAC 1351
GIS + G + IL V D A + I +G I GQG T AQ
Sbjct: 482 GISFFTEIVGAG-PSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQII 540
Query: 1352 AYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAA-------RCILLCCQELKTRLMP 1404
A ELGIP + I+++ + P T GS ++ A R I Q + ++
Sbjct: 541 ATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLE 600
Query: 1405 YMDKGKSWE------KTISDAFERGVDLQVTKSVSSQQTPDLLP------MYTIPT---- 1448
+ W+ K + + F+ +L S P+L P Y P
Sbjct: 601 VHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSP--PPNLEPGLEAVNYYDPPNMTYP 658
Query: 1449 --AAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQG----AFIMGIG 1496
A +++D+ TG + R L+D G INP I GQ+ G AF + +G
Sbjct: 659 FGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMG 712
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/407 (19%), Positives = 147/407 (36%), Gaps = 66/407 (16%)
Query: 1149 KCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRF-GLGQASIYDPSTFRVVANAVRTDK 1207
K G+ K+G I L+ + G G + + + G +Y + A V T+
Sbjct: 293 KIGLKKDGKIAALA-LEATQAGGAYAGYGIITILYTGALMHGLYHIPAIKHDAWRVYTNT 351
Query: 1208 PTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE--------------DV 1253
P G R G + A E ++ + + D +R N+ + V
Sbjct: 352 PPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQIPYVTMYAQRVMSYGV 411
Query: 1254 KKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF 1313
+ ++ + + ++ER+ + + + +S + + W G L F
Sbjct: 412 PECLEKVKAASGWEERKGKLPKGRGLGIALSHF-VSGTSTPKHWT--GEPHATVNLKLDF 468
Query: 1314 YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFP 1373
D + + T +IGQG +T +Q A LG+ + +I + A + + P
Sbjct: 469 -------------DGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTP 515
Query: 1374 NAANTGGSTASDNAARCILLCCQELKTRLMPY----MDKGKSWEKTISDAF------ERG 1423
+ S + + +ELK L+ +D + + I + F + G
Sbjct: 516 KDNGSYSSRVTFMVGNASISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPG 575
Query: 1424 VDLQ--VTKSVSSQQTPDLLPMYTIPT----------------------AAATEVEVDLL 1459
+ Q V ++ T + YT PT A E VD +
Sbjct: 576 LSFQEVVKAAMVDSGTITVKGTYTCPTEFQGDKKIRGSAIGATMGFCYAAQVVEASVDEI 635
Query: 1460 TGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHD 1506
TG+ +V + D G+++NP GQ QG MG+G E ++D
Sbjct: 636 TGKVTAHKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYD 682
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 119/325 (36%), Gaps = 63/325 (19%)
Query: 747 PKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHA 806
P +D + + G+A+Y D+ + ++ + A+I +ID++ A A GV
Sbjct: 16 PLVDGVEKVTGKAKYTADIAA-PDALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTG 74
Query: 807 KDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFA 866
+ P +P I E+E A
Sbjct: 75 AETPVPFGVLP----------------------------------------IAENEYPLA 94
Query: 867 ENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVK---TPKLDIKQ---IVQDGDKAR 920
++V + G + A+ A + +A +A ++KV Y + TPK +K + D
Sbjct: 95 RDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEVLPAYMTPKAAMKAGAIALHDDKPNN 154
Query: 921 IVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCV-- 978
I+ E + F+ R +K + F H ME L
Sbjct: 155 ILREVHAEFGDVAAAFAEADLIR-------EKTYT------FAEVNHVHMELNATLAEYD 201
Query: 979 PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAV 1038
P D + + +Q V VA L + + R+ V +GGG+GA+ + + + +IA +
Sbjct: 202 PVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGAR-TEALHFEIIAGL 260
Query: 1039 CSNVINKPVRIVMSIESMMGALGGR 1063
+ VR++ + E A GR
Sbjct: 261 LARKAKGTVRLLQTREETFIAHRGR 285
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 64/262 (24%)
Query: 829 KAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSA 888
+A GV + IPGKN G I +DE +++V G I + A
Sbjct: 60 RAIDGVEAVLDYHAIPGKNRF------GIIIKDEPCLVDDKVRRYGDAIAVVAA------ 107
Query: 889 YEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSK-FSPDSNARWEIL 947
+TP L VQ+ A +E +LE T + DS A +
Sbjct: 108 --------------QTPDL-----VQEALDAITIEYEELEGIFTMERALEEDSPA----I 144
Query: 948 EAGKKLFKIKGAAEFGP------------QYHYTMEGQTALCVPSEDGVDIYAASQWVTL 995
+ ++K E+G + Y+ T + + + GV Y +T+
Sbjct: 145 HGDTNIHQVK-HLEYGDVDAAFKQCDIVVEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTV 203
Query: 996 V---------QESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRS--CYPAVIAAVCSNVIN 1044
V + VAG+L LPN++V + GGG+G KL S C+ A++ +
Sbjct: 204 VVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGGGFGGKLDLSVQCHCALL----TYHTK 259
Query: 1045 KPVRIVMSIESMMGALGGRYPV 1066
KPV++V S E R+P+
Sbjct: 260 KPVKMVRSREESTTVSSKRHPM 281
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 1149 KCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDKP 1208
K G K+G +Q + D G + + R + Y RV A V T+ P
Sbjct: 286 KTGATKDGRLQAVQVEMFGDTGAYASYGPAVITRATVHCMGPYVVPNVRVDAKFVYTNNP 345
Query: 1209 TYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN 1247
G R G + + E M+ +A + DP D+RI N
Sbjct: 346 MSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILN 384
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 742 LTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVH 801
L K K+D++ + G A++ D + +A V + A+I S+D + A A GV
Sbjct: 8 LGKNKVKVDSLEKVMGTAKFAADY-SFPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVE 66
Query: 802 TFVHAKDIPGKN 813
+ IPGKN
Sbjct: 67 AVLDYHAIPGKN 78
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 17/228 (7%)
Query: 827 DEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFED--EKLFAENEVEFAGQIIGAIIADN 884
D +A PGV D+ + I A + F+ + L A F G+I+ ++A +
Sbjct: 64 DAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASS 123
Query: 885 FKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARW 944
A +AA++++V Y ++ P + + +G+ + T + S S AR
Sbjct: 124 RAIAEDAAQLIQVEYEEL--PAVTGIEAALEGEA-------RANDTLAGNVVSRTSRARD 174
Query: 945 EILEA-GKKLFKIKGAAEFGPQYHYTME--GQTALCVPSEDGVDIYAASQWVTLVQESVA 1001
E+ ++G G ME G A + + ++ A+Q + V+ VA
Sbjct: 175 ELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVA 234
Query: 1002 GVLGLPNNRVNVKTRRIGGGYGAKLSRSCYP-AVIAAVCSNVINKPVR 1048
+P + + V+ +GGG+G K +P ++ + S + +PVR
Sbjct: 235 MFCAIPEHLIEVRVPDVGGGFGQKA--HLHPEELLVCLLSRALGRPVR 280
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 128/345 (37%), Gaps = 45/345 (13%)
Query: 1202 AVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFR 1261
AV T+K G R G E ++D A + P ++R N+ + F +
Sbjct: 359 AVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLG 418
Query: 1262 GSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP----------- 1310
+ ++T N + +++ + R R R + + V++F
Sbjct: 419 ---QTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLS 475
Query: 1311 -LGFYDVSYAILSVFRRDAT--VAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPA 1367
LG ++ +V R D T V +TTS GQG T +AQ A LG+P +V++
Sbjct: 476 FLGTPTTTHDSATV-RIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAG 534
Query: 1368 QNNI---FPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISDAF---- 1420
F A+ G + + R + + +K +L ++ + S + I D
Sbjct: 535 STKNTYGFGAYASRGAVIGAGSIGRAASIVRERVK-QLAGHLLEAASEDIVIEDGLVHVA 593
Query: 1421 ---ERGVDLQ----------------VTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTG 1461
+G+ ++ + T D + A VE+D T
Sbjct: 594 GVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTY 653
Query: 1462 QHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHD 1506
++ +ED G INP I GQI+G IG E I+D
Sbjct: 654 ATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYD 698
>pdb|2D6F|C Chain C, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|D Chain D, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 619
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 13 RLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKG 55
R+ S S + + G +IG E+ PG RL + DYA+ +G
Sbjct: 290 RIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRG 332
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 289 RLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKG 331
R+ S S + + G +IG E+ PG RL + DYA+ +G
Sbjct: 290 RIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRG 332
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 554 PRVPVDVYIQIRDIKELRQIFTRNGYVLMG------SATTLTEAMDYFDRTSKTDANFEY 607
PR V +I D LR +F R G ++ G +A ++TEA+ +FD T+ +
Sbjct: 114 PRSTVGTVTEIYDY--LRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQI 171
Query: 608 MRIMKDHLEQVAHYAVRNFALGLSTTEVSPSLWSGARMIQIERAMSQGS 656
R++ + + ++N L T S SG +I A GS
Sbjct: 172 ARLILREIRDRLGF-LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS 219
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1474 TGQSINPAIDIGQIQGAFIMGIGLWTF 1500
TG S+NPA G G +MGI LW +
Sbjct: 195 TGSSLNPARTFGPYLGDSLMGINLWQY 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,199,345
Number of Sequences: 62578
Number of extensions: 1873642
Number of successful extensions: 4521
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4248
Number of HSP's gapped (non-prelim): 193
length of query: 1520
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1409
effective length of database: 8,027,179
effective search space: 11310295211
effective search space used: 11310295211
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)