RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7003
(1520 letters)
>gnl|CDD|217210 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde
dehydrogenase.
Length = 543
Score = 241 bits (617), Expect = 1e-68
Identities = 138/410 (33%), Positives = 186/410 (45%), Gaps = 55/410 (13%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+ TYK G K+G I L D G + + + R GL Y R+ AV
Sbjct: 143 FKITYKVGAKKDGKITALDVDILADGGAYADLSDPVVERAGLHALGPYKIPNIRIEGTAV 202
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQF--- 1260
T+ P G R G + +E ++D +A + DP ++R NL E + Q
Sbjct: 203 YTNLPPNGAFRGFGGPQGMFALERLIDELARELGIDPLEIRRKNLYKEGDTTPFGQRLDS 262
Query: 1261 ----------RGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
R S +++ RR A+E FN N WRKRGI T +
Sbjct: 263 GNLPECLDECRKSSEFRARRAAVEKFNI---------------GNSWRKRGIGLGPTKYG 307
Query: 1311 LGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
GF D + A + ++ D +V ++T GIEIGQGL TKVAQ A ELGIP++ I +
Sbjct: 308 SGFGAPFLDQAGARVRLYS-DGSVTVSTGGIEIGQGLETKVAQIAAEELGIPLDDIRVIS 366
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDK-------GKSWEKTISDA 1419
+ PN + T GS +D + L C++LK RL P K +WE I A
Sbjct: 367 GDTDKVPNGSGTYGSRGTDVNGNAVRLACEKLKERLKPIAAKMLEQSEEDITWEDGIVAA 426
Query: 1420 FERGVDLQVTKS-----------VSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRV 1468
+ V L T + S TP Y AAA EVEVD LTG ++LR
Sbjct: 427 YGVSVSLSATAAYATPPTGFEPGTGSYGTPFFYFTY---GAAAVEVEVDCLTGDVKVLRT 483
Query: 1469 DILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
DI+ D G S+NPAID GQI+G F+ GIGL E ++D G LLT
Sbjct: 484 DIVMDCGTSLNPAIDEGQIEGGFVQGIGLALMEEIVYD-PGGNLLTRSLG 532
Score = 99.3 bits (248), Expect = 4e-21
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 955 KIKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
++G FG Q H+ ME AL VP ED + IY+++Q V+ VA VLG+P ++V V
Sbjct: 32 VVEGEYTFGRQEHFYMETHGALAVPDEDDELTIYSSTQAPHYVRTMVARVLGIPEHKVRV 91
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
R+GGG+G K+ AVIAA+ + + +PVR ++ + M A GGR+P TY++G
Sbjct: 92 IVPRVGGGFGKKVFSLPL-AVIAALAALKLGRPVRWMLDRQEDMIATGGRHPFKITYKVG 150
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 203 bits (518), Expect = 1e-52
Identities = 120/396 (30%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 1144 YLRTYKCGVDKNGVIQNLS-TVFN-----VDKGMTLNENGFLHVRFGLGQASIYDPSTFR 1197
+L YK G G I L ++N +D + E H ++Y+ R
Sbjct: 838 FLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSD------NVYEIPNVR 891
Query: 1198 VVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKF 1256
+V N T+ P+ R G + E+ + IA +N+ P ++R N + E V +
Sbjct: 892 IVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNFQGEGSVTHY 951
Query: 1257 YQQF------------RGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISA 1304
Q + S + +RR+ ++ FNA NRW+KRG++
Sbjct: 952 GQVLQHCTLPQLWDELKVSCDFLKRREEVDEFNA---------------KNRWKKRGVAM 996
Query: 1305 VVTLFPLGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIE 1360
V T F + F + + A++ V+ D TV +T G+E+GQGLHTKVAQ A IP+
Sbjct: 997 VPTKFGISFTTKFMNQAGALVHVYT-DGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLS 1055
Query: 1361 KIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKG--KSWEKTISD 1418
+ + + PNA+ T S +SD +L C+++K R+ P K S+ + ++
Sbjct: 1056 SVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKLNFSSFAELVTA 1115
Query: 1419 AFERGVDLQVTKSVSSQ---QTPDLL---------PM-YTIPTAAATEVEVDLLTGQHQI 1465
+ + +DL S+ TPD+ P Y AA EVE+D LTG
Sbjct: 1116 CYFQRIDL------SAHGFYITPDIGFDWKTGKGNPFNYFTYGAAFAEVEIDTLTGDFHT 1169
Query: 1466 LRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFE 1501
RVDI+ D G SINPAIDIGQI+GAF+ G+G E
Sbjct: 1170 RRVDIVMDLGYSINPAIDIGQIEGAFVQGLGWVALE 1205
Score = 174 bits (444), Expect = 8e-44
Identities = 104/355 (29%), Positives = 168/355 (47%), Gaps = 67/355 (18%)
Query: 727 SQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKI 786
S G +D+ET + + +P + A Q GEAEY +D+P A++VL+ + A+I
Sbjct: 550 SVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMPPNTLHAALVLSTKPHARI 609
Query: 787 QSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGK 846
SID + A + PG AKD+PG N I
Sbjct: 610 LSIDDSEAKSSPGFAGIFLAKDVPGDN----------------------------MI--- 638
Query: 847 NLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPK 906
G + DE+LFA + V GQ+IG ++AD ++A AA+ VKV Y ++
Sbjct: 639 ---------GPVVHDEELFATDVVTCVGQVIGVVVADTQENAKAAARKVKVEYEELPA-I 688
Query: 907 LDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWE------ILEAGKKLFKIKGAA 960
L I++ ++ G F P++ R E +G+ I+G
Sbjct: 689 LSIEEAIEAG------------------SFHPNTERRLEKGDVELCFASGQCDRIIEGEV 730
Query: 961 EFGPQYHYTMEGQTALCVPSEDG--VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRI 1018
+ G Q H+ +E ++L S+ G V + +++Q Q+ VA VLGLP ++V KT+RI
Sbjct: 731 QMGGQEHFYLEPNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRI 790
Query: 1019 GGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
GGG+G K +RS + A AAV + ++N+PV++ + + M G R+ Y++G
Sbjct: 791 GGGFGGKETRSAFIAAAAAVPAYLLNRPVKLTLDRDVDMMITGQRHAFLGKYKVG 845
Score = 160 bits (407), Expect = 2e-39
Identities = 69/193 (35%), Positives = 96/193 (49%), Gaps = 47/193 (24%)
Query: 43 LVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLVLVHMCGGWAI 102
L++++RD L GTK C EGGCG CTV V+ TG Y+VNACL ++ G +
Sbjct: 4 LLEYLRDL-GLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHV 62
Query: 103 TTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLL 162
TVEG+G+++ G H VQ LA+M+GSQCG+C+PG +M+MY
Sbjct: 63 ITVEGIGNRRDGLHPVQEALASMHGSQCGFCTPGFIMSMY-------------------- 102
Query: 163 LQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILD 222
+ L K T+ ++E L GN+CRCTG+RPILD
Sbjct: 103 --------------------------ALLRSSKTPPTEEQIEECLAGNLCRCTGYRPILD 136
Query: 223 AFQSFSCDASDSV 235
AF+ F+
Sbjct: 137 AFRVFAKTDDALY 149
Score = 52.4 bits (126), Expect = 2e-06
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 319 LVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNAC 366
L++++RD L GTK C EGGCG CTV V+ TG Y+VNAC
Sbjct: 4 LLEYLRDL-GLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNAC 50
Score = 48.2 bits (115), Expect = 4e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 370 CFTRNICRCTGFRPILDAFQSFSCDASDSV 399
C N+CRCTG+RPILDAF+ F+
Sbjct: 120 CLAGNLCRCTGYRPILDAFRVFAKTDDALY 149
Score = 47.8 bits (114), Expect = 6e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 649 ERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERG 708
R S G +D+ET + + +P + A Q GEAEY +D+P A++VL+ +
Sbjct: 546 PRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMPPNTLHAALVLSTKP 605
Query: 709 PAKIQSIDSTLALVS 723
A+I SID + A S
Sbjct: 606 HARILSIDDSEAKSS 620
Score = 37.0 bits (86), Expect = 0.088
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 21/158 (13%)
Query: 502 LIELALTPVNVNVEG--IWYIVTEVREIFEIFDGLEANQTYMLVGGNTGYGV----YRPR 555
L+ LTP+ + G WY T ++ + E+ + LV GNT G+ +
Sbjct: 213 LLLRKLTPLKLLGNGGLTWYRPTSLQHLLELKAEYPDAK---LVVGNTEVGIEMRFKNAQ 269
Query: 556 VPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMKDHL 615
PV I + EL I ++ + +G+A L+E + F + K E K +
Sbjct: 270 YPV--LISPTHVPELNAIKVKDDGLEIGAAVRLSELQNLFRKVVKERPAHE-TSACKAFI 326
Query: 616 EQVAHYA---VRNFA-LGLSTTEVSP-----SLWSGAR 644
EQ+ +A +RN A +G + SP LW A
Sbjct: 327 EQLKWFAGTQIRNVASIGGNICTASPISDLNPLWMAAG 364
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 189 bits (481), Expect = 3e-48
Identities = 132/410 (32%), Positives = 198/410 (48%), Gaps = 67/410 (16%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
TY G +G I L ++ G++ + + + +G YD +T+
Sbjct: 861 TYSVGFKSDGKITALHLDILINAGISPDISPIMPRNI-IGALKKYDWGALSFDIKVCKTN 919
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRN-EDVKKFYQQFRG--- 1262
+ R+PG + + E +++H+A+ ++ D VR NL E +K FY G
Sbjct: 920 LSSRSAMRAPGEVQGSYIAEAIIEHVASTLSMDVDSVRKINLHTYESLKLFYGDSAGEPS 979
Query: 1263 -------------SVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAV---- 1305
S ++K+R + ++ FN +N+W+KRGIS V
Sbjct: 980 EYTLPSIWDKLASSSEFKQRTEMVKEFNR---------------SNKWKKRGISRVPIVH 1024
Query: 1306 -VTLFPL-GFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIP----- 1358
V L P G VS ILS D ++A+ GIEIGQGL TKV Q A+ LG+
Sbjct: 1025 EVMLRPTPG--KVS--ILS----DGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGG 1076
Query: 1359 ---IEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK----- 1410
++KI + + T GST S+++ + LCC L RL P ++ +
Sbjct: 1077 EDLLDKIRVIQSDTLSMIQGGFTAGSTTSESSCEAVRLCCVILVERLKPIKERLQEQMGS 1136
Query: 1411 -SWEKTISDAFERGVDLQVTKSVSSQQTPDLLPM-YTIPTAAATEVEVDLLTGQHQILRV 1468
+W+ IS A+ + V+L S SS TPD M Y AA +EVEVDLLTG+ ILR
Sbjct: 1137 VTWDMLISQAYMQSVNL----SASSYYTPDPSSMEYLNYGAAVSEVEVDLLTGETTILRS 1192
Query: 1469 DILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
DI+ D GQS+NPA+D+GQI+GAF+ GIG + E + G ++T+ TW
Sbjct: 1193 DIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNSD-GLVVTDGTW 1241
Score = 155 bits (393), Expect = 7e-38
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 42/216 (19%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
++ ++ F +NG + + + V P T L++F+R K K C EGGCG C V ++ P
Sbjct: 2 SNMSLVFAVNGERFEL-SSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDP 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
V ++V++CL L+ G +ITT EGLG+ K G+H + R A + SQCG+C+PGM
Sbjct: 61 VLDQVEDFTVSSCLTLLCSVNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGM 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPP---FSLEVLFVILLIFVIVSFLEGK 194
++++S L+ P FS
Sbjct: 121 CISLFS----------------ALVNADKTDRPEPPSGFS-------------------- 144
Query: 195 KYKVTKSEVEGALGGNICRCTGFRPILDAFQSFSCD 230
K+T E E A+ GN+CRCTG+RPI+DA +SF+ D
Sbjct: 145 --KLTVVEAEKAVSGNLCRCTGYRPIVDACKSFAAD 178
Score = 154 bits (390), Expect = 2e-37
Identities = 98/354 (27%), Positives = 159/354 (44%), Gaps = 55/354 (15%)
Query: 725 AMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPA 784
+ + E P+ +P+ K+ A Q +GEA YV+D+P + + + + + A
Sbjct: 562 LLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPLA 621
Query: 785 KIQSIDSTLALAYPGVHTFVHAKDIP--GKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKD 842
+++ I L GV + KDIP G+N+ G
Sbjct: 622 RVKGIKFKSNLVPQGVLAVITFKDIPKGGQNI-------GSKT----------------- 657
Query: 843 IPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYS-- 900
IF E LFA+ AGQ I ++AD K A AA + V Y
Sbjct: 658 ---------------IFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYDTE 702
Query: 901 DVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAA 960
+++ P L ++ V+ + +P SK + A +IL A +IK
Sbjct: 703 NLEPPILTVEDAVKRSSLFEVPPFLYPKPVGDISKGM--AEADHKILSA-----EIK--- 752
Query: 961 EFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIG 1019
G QY++ ME QTAL +P ED + +Y+++Q V +A LG+P + V V TRR+G
Sbjct: 753 -LGSQYYFYMETQTALALPDEDNCIVVYSSTQCPEYVHSVIARCLGIPEHNVRVITRRVG 811
Query: 1020 GGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
GG+G K +S A A+ + + +PVR+ ++ ++ M GGR+P+ TY +G
Sbjct: 812 GGFGGKAVKSMPVATACALAAFKLQRPVRMYLNRKTDMIMAGGRHPMKITYSVG 865
Score = 62.0 bits (151), Expect = 2e-09
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 518 WYIVTEVREIFEIFDGLEANQTYM-LVGGNTGYGVYRPRVPVDVYIQIRDIKELRQIFTR 576
WY V E+ + + + + LV GNTG G Y+ D YI IR I EL I
Sbjct: 236 WYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRD 295
Query: 577 NGYVLMGSATTLTEAMDYFDRTSKTDANFEYM-RIMKDHLEQVAHYAVRNFA 627
+ +G+ T+++A++ + ++ EY+ + + DH+E++A VRN
Sbjct: 296 EKGIEIGAVVTISKAIEAL----REESKSEYVFKKIADHMEKIASRFVRNTG 343
Score = 58.2 bits (141), Expect = 3e-08
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 294 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 353
++ ++ F +NG + + + V P T L++F+R K K C EGGCG C V ++ P
Sbjct: 2 SNMSLVFAVNGERFEL-SSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDP 60
Query: 354 VTGVDSTYSVNACGDRCFTRNICRCT----------GFRPILDAFQSF 391
V ++V++C + N C T GF PI F F
Sbjct: 61 VLDQVEDFTVSSCLTLLCSVNGCSITTSEGLGNSKDGFHPIHKRFAGF 108
Score = 43.6 bits (103), Expect = 0.001
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 374 NICRCTGFRPILDAFQSFSCD 394
N+CRCTG+RPI+DA +SF+ D
Sbjct: 158 NLCRCTGYRPIVDACKSFAAD 178
Score = 35.5 bits (82), Expect = 0.30
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 647 QIERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAE 706
+ + + E P+ +P+ K+ A Q +GEA YV+D+P + + + +
Sbjct: 558 KKPTLLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYST 617
Query: 707 RGPAKIQSI--------DSTLALVSCA-MSQGSEDFETKQNLWPLTKPLPKIDAITQCAG 757
+ A+++ I LA+++ + +G ++ +K P +PL D +T+CAG
Sbjct: 618 KPLARVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIFGP--EPL-FADEVTRCAG 674
Query: 758 E 758
+
Sbjct: 675 Q 675
Score = 33.9 bits (78), Expect = 0.96
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 1073 GTIGGNLSIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYL 1121
G+IGGNL + + +F SD+ +L G+T+ I++ E+ ++ EE+L
Sbjct: 343 GSIGGNL-VMAQRKQFPSDIATILLAAGSTVNIQNASKREK-LTLEEFL 389
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this family
are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes,
closely related to xanthine dehydrogenase/oxidase.
Length = 1330
Score = 173 bits (439), Expect = 2e-43
Identities = 121/397 (30%), Positives = 184/397 (46%), Gaps = 43/397 (10%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQA-SIYDPSTFRVVANA 1202
YL YK G +G I L + G +L+E+ ++ + GL + + Y R A
Sbjct: 843 YLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWV-IEMGLLKMDNAYKFPNLRCRGWA 901
Query: 1203 VRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE-DVKKFYQQFR 1261
RT+ P+ R G + E + +A P VR N+ E D + Q+
Sbjct: 902 CRTNLPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINMYKEIDQTPYKQEIN 961
Query: 1262 GS------------VKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLF 1309
Y ER+ A+E FNA N W+KRG++ + F
Sbjct: 962 AKNLFQCWRECMAKSSYSERKVAVEKFNA---------------ENYWKKRGLAVIPLKF 1006
Query: 1310 PLGFYDVSY---AILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKP 1366
P+G V+ A L D +V +T GIE+GQG+HTK+ Q + EL +P+ + L+
Sbjct: 1007 PVGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRG 1066
Query: 1367 AQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGV 1424
PN +GGS +D + CQ L RL P + K +W+ AF++ +
Sbjct: 1067 TSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIISKNPQGTWKDWAQTAFDQSI 1126
Query: 1425 DLQVT------KSVSSQQTPDLLPM-YTIPTAAATEVEVDLLTGQHQILRVDILEDTGQS 1477
L +S + + + P Y + AA +EVE+D LTG H+ +R DI+ D G S
Sbjct: 1127 SLSAVGYFRGYESNINWEKGEGHPFEYFVYGAACSEVEIDCLTGDHKNIRTDIVMDVGHS 1186
Query: 1478 INPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
INPA+DIGQ++GAFI G+GL+T E ++ G L +
Sbjct: 1187 INPALDIGQVEGAFIQGMGLYTIE-ELSYSPQGILYS 1222
Score = 145 bits (368), Expect = 6e-35
Identities = 103/351 (29%), Positives = 161/351 (45%), Gaps = 67/351 (19%)
Query: 741 PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGV 800
P+ P+ + + GEA Y +D+P + +E F + V + R AKI SID + AL+ PGV
Sbjct: 575 PIGHPIMHLSGVKHATGEAIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGV 634
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
+ A+ H +D F
Sbjct: 635 VDIITAE-------------------------------HLQD-------------ANTFG 650
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
EKL A ++V GQ++ A+IAD+ A +AAK VK+VY D++ L I++ +Q
Sbjct: 651 TEKLLATDKVHCVGQLVCAVIADSEVQAKQAAKHVKIVYRDLEPLILTIEEAIQH----- 705
Query: 921 IVEMFKLEPTATKSKFSPDSNARW-EILEAGKKLFKI-KGAAEFGPQYHYTMEGQTALCV 978
KS F P+ + + EA K + +I +G G Q H+ ME Q+ L V
Sbjct: 706 ------------KSFFEPERKLEYGNVDEAFKVVDQILEGEIHMGGQEHFYMETQSMLVV 753
Query: 979 PS-EDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIA 1036
P ED +D+Y ++Q+ +Q+ VA L LP N+V RR+GG +G K+ ++ A I
Sbjct: 754 PKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKTSIMAAIT 813
Query: 1037 AVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIGTI--GGNLSIKHEH 1085
A +N + VR + M GGR+P Y+ G + G +++ EH
Sbjct: 814 AFAANKHGRAVRCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEH 864
Score = 145 bits (366), Expect = 1e-34
Identities = 83/232 (35%), Positives = 117/232 (50%), Gaps = 54/232 (23%)
Query: 24 FTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDS 83
F +NG ++ V P T L+ ++R RL GTKY C GGCG CTV ++ +P T
Sbjct: 5 FYVNGR-KVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIR 63
Query: 84 TYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYS 143
+ VNACL + G A+TTVEG+GS + H VQ R+A +G+QCG+C+PGMVM+MY+
Sbjct: 64 HHPVNACLTPICSLYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYA 123
Query: 144 RHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEV 203
LL+ + P +L+ ++
Sbjct: 124 ------------------LLRNH----PEPTLD-------------------------QL 136
Query: 204 EGALGGNICRCTGFRPILDAFQSFSCDASDSVQRK-----CADIEVRGKRDF 250
ALGGN+CRCTG+RPI+DA ++F C S Q K C D + G +F
Sbjct: 137 TDALGGNLCRCTGYRPIIDACKTF-CKTSGCCQSKENGVCCLDQGINGLPEF 187
Score = 58.9 bits (142), Expect = 2e-08
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 300 FTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDS 359
F +NG ++ V P T L+ ++R RL GTKY C GGCG CTV ++ +P T
Sbjct: 5 FYVNGR-KVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIR 63
Query: 360 TYSVNAC 366
+ VNAC
Sbjct: 64 HHPVNAC 70
Score = 50.8 bits (121), Expect = 7e-06
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 28/113 (24%)
Query: 336 CREGGCGVCT-------VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAF 388
C CG CT + +HP +D +A G N+CRCTG+RPI+DA
Sbjct: 105 CHGTQCGFCTPGMVMSMYALLRNHPEPTLDQL--TDALGG-----NLCRCTGYRPIIDAC 157
Query: 389 QSFSCDASDSVQRK-----CADIEVRGKRDF-----ISHEGLPEPEY---DPT 428
++F C S Q K C D + G +F S E E E+ DPT
Sbjct: 158 KTF-CKTSGCCQSKENGVCCLDQGINGLPEFEEGDETSPELFSEEEFLPLDPT 209
Score = 43.8 bits (103), Expect = 0.001
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 667 PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
P+ P+ + + GEA Y +D+P + +E F + V + R AKI SID + AL
Sbjct: 575 PIGHPIMHLSGVKHATGEAIYCDDMPAVDQELFLTFVTSSRAHAKIVSIDLSEAL 629
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of xanthine
dehydrogenase, and enzyme that reduces the purine pool by
catabolizing xanthine to urate. This model is based
primarily on bacterial sequences; it does not manage to
include all eukaryotic xanthine dehydrogenases and
thereby discriminate them from the closely related enzyme
aldehyde dehydrogenase [Purines, pyrimidines,
nucleosides, and nucleotides, Other].
Length = 758
Score = 161 bits (409), Expect = 2e-40
Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 56/331 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
L A AG A Y++D+P+ + A++ L+ R A+I S+D + A PGV
Sbjct: 3 TSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDV 62
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ A DIPG+N DI I D+
Sbjct: 63 LTAADIPGEN----------------------------DI------------SPIIHDDP 82
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
L A+ +VEF GQ I A++A + +A AA++ K+ Y + LDI++ + G +
Sbjct: 83 LLADGKVEFVGQPIFAVVATSRDAARRAARLAKIEYEE-LPAVLDIEEALAAGSR----- 136
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG 983
P + D+ A L A ++ G G Q H+ +EGQ AL VP EDG
Sbjct: 137 -LVTPPLTLERG---DAAAA---LAAAPH--RLSGTMRIGGQEHFYLEGQIALAVPGEDG 187
Query: 984 -VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNV 1042
+ +++++Q + VQ VA VLG+P++ V V+ RR+GGG+G K +++ A +AAV +
Sbjct: 188 GMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKETQANLFACLAAVAARK 247
Query: 1043 INKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+PV++ + M G R+ Y++G
Sbjct: 248 TGRPVKLRPDRDDDMMITGKRHDFRVDYDVG 278
Score = 157 bits (398), Expect = 5e-39
Identities = 100/342 (29%), Positives = 154/342 (45%), Gaps = 72/342 (21%)
Query: 1225 IEHVMDHIATVVNRDPTDVRIANLRNED---VKKFYQ------------QFRGSVKYKER 1269
IE +MD +A + +DP +VR N +D V ++Q + S Y R
Sbjct: 352 IERIMDEVARALGKDPLEVRKRNFYGKDERNVTPYHQTVEDNIIHEIIEELEASSDYAAR 411
Query: 1270 RDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF----YDVSYAILSVFR 1325
R AI FNA + K+GI+ F + F + + A++ V+
Sbjct: 412 RAAIRAFNA---------------TSPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYT 456
Query: 1326 RDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASD 1385
D ++ + G E+GQGL+TKVAQ A E + I+++ + PN + T S+ SD
Sbjct: 457 -DGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTGKVPNTSATAASSGSD 515
Query: 1386 NAARCILLCCQELKTRLMPYMDKGKSWEKTISD---------------AFERGVDL---- 1426
+++K RL+ + + W+ D F V
Sbjct: 516 LNGMAAQDAARQIKERLVEFA--AEKWQVPEEDVRFAPNHVRVGEQRVPFAELVQQAYFA 573
Query: 1427 QVTKSVSSQ---QTPDLL---------PMYTIPTAAA-TEVEVDLLTGQHQILRVDILED 1473
+V +SS +TP + P Y AA +EV VD LTG++++LR DIL D
Sbjct: 574 RV--QLSSTGFYKTPKIHWDRAKGRGRPFYYFAYGAACSEVSVDTLTGEYKVLRADILHD 631
Query: 1474 TGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
G+S+NPAIDIGQI+G F+ G+G T E + D+ G L T+
Sbjct: 632 VGRSLNPAIDIGQIEGGFVQGMGWLTTEELVWDE-KGRLRTH 672
Score = 35.4 bits (82), Expect = 0.27
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSID 716
L A AG A Y++D+P+ + A++ L+ R A+I S+D
Sbjct: 3 TSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMD 49
>gnl|CDD|226978 COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit
B [Nucleotide transport and metabolism].
Length = 781
Score = 157 bits (399), Expect = 3e-39
Identities = 97/319 (30%), Positives = 154/319 (48%), Gaps = 57/319 (17%)
Query: 756 AGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLA 815
G A Y++D+P+ + ++ L++R A+I +D + A PGV + A D+PG+N
Sbjct: 33 TGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVPGEN-- 90
Query: 816 IPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQ 875
P H D+ L A+ +VEF GQ
Sbjct: 91 -------------DISPVKH-------------------------DDPLLADGKVEFHGQ 112
Query: 876 IIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSK 935
+ A+IA++ ++A AA++ K+ Y D+ P DI D+A P K
Sbjct: 113 PVFAVIAESREAARRAARLAKIEYEDLP-PVTDI-------DEAIAAGRLVTPPLTLKRG 164
Query: 936 FSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVT 994
D+ A L A +++G G Q H+ +EGQ AL VP EDG V +++++Q T
Sbjct: 165 ---DAAAA---LAAAPH--RLQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPT 216
Query: 995 LVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIE 1054
VQ VA VLG+P+N V V+ RR+GGG+G K +++ A +AA+ + +PV+I +
Sbjct: 217 EVQHLVAHVLGVPSNAVTVEVRRMGGGFGGKETQANQFAALAALAAKKTGRPVKIRPDRD 276
Query: 1055 SMMGALGGRYPVYATYEIG 1073
M A G R+ + YE+G
Sbjct: 277 EDMTATGKRHDFHVDYEVG 295
Score = 148 bits (375), Expect = 3e-36
Identities = 108/416 (25%), Positives = 179/416 (43%), Gaps = 68/416 (16%)
Query: 1148 YKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDK 1207
Y+ G D G I + G + + +G + R + Y +++ ++T+
Sbjct: 292 YEVGFDDEGRILGVDATLAARCGFSADLSGPVTDRALFHADNAYFYPHVHILSRPLKTNT 351
Query: 1208 PTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNED---VKKFYQ------ 1258
+ R G + IE ++D +A + +DP ++R N +D V ++Q
Sbjct: 352 VSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGRNVTPYHQTVEDNI 411
Query: 1259 ------QFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLG 1312
+ S Y RR+AI FNA + KRG++ F +
Sbjct: 412 IARIVDELEASSDYAARREAIRAFNA---------------ASPVIKRGLALTPVKFGIS 456
Query: 1313 FYDVSY----AILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQ 1368
F Y A++ V+ D ++ + G E+GQGL+TKVAQ A E + I+++ +
Sbjct: 457 FTATHYNQAGALVHVYT-DGSIHLNHGGTEMGQGLYTKVAQVVAEEFQVDIDRVKITATT 515
Query: 1369 NNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISD-AFE----RG 1423
+ PN + T S+ SD +++K RL+ + + W D AF R
Sbjct: 516 TDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAF--AAEHWGVPEEDVAFLPNRVRI 573
Query: 1424 VDLQVTKSVSSQQ---------------TPDL---------LPMYTIPTAAA-TEVEVDL 1458
++ + +Q TP + P Y AA +EV VD
Sbjct: 574 GGQELAFADLVKQAYFARVQLSAAGFYKTPKIHWDRAAGRGRPFYYFAYGAACSEVSVDT 633
Query: 1459 LTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
LTG++++ R DIL D G+S+NPAID+GQI+G F+ G+G T E D++ G L T
Sbjct: 634 LTGEYKVERTDILHDVGRSLNPAIDLGQIEGGFVQGMGWLTTEELWWDEK-GRLRT 688
Score = 32.0 bits (73), Expect = 3.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 682 AGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDST 718
G A Y++D+P+ + ++ L+ER A+I +D +
Sbjct: 33 TGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLS 69
>gnl|CDD|234072 TIGR02963, xanthine_xdhA, xanthine dehydrogenase, small subunit.
Members of this protein family are the small subunit
(or, in eukaryotes, the N-terminal domain) of xanthine
dehydrogenase, an enzyme of purine catabolism via urate.
The small subunit contains both an FAD and a 2Fe-2S
cofactor. Aldehyde oxidase (retinal oxidase) appears to
have arisen as a neofunctionalization among xanthine
dehydrogenases in eukaryotes and [Purines, pyrimidines,
nucleosides, and nucleotides, Other].
Length = 467
Score = 140 bits (355), Expect = 5e-35
Identities = 73/224 (32%), Positives = 102/224 (45%), Gaps = 54/224 (24%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+RF +NG + ++V P L+D++R+ A L GTK C EG CG CTV V V G
Sbjct: 1 IRFFLNGET-VTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV--GELVDGG 57
Query: 82 DSTY-SVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
Y SVNAC+ + G A+ TVE L H VQ + +GSQCG+C+PG VM+
Sbjct: 58 KLRYRSVNACIQFLPSLDGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMS 117
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
+Y+ L ++
Sbjct: 118 LYA-------------------LYK----------------------------NSPAPSR 130
Query: 201 SEVEGALGGNICRCTGFRPILDAFQSFSCD--ASDSVQRKCADI 242
+++E AL GN+CRCTG+RPILDA + + D SD + A I
Sbjct: 131 ADIEDALQGNLCRCTGYRPILDAAE-AAFDYPCSDPLDADRAPI 173
Score = 56.5 bits (137), Expect = 8e-08
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 357
+RF +NG + ++V P L+D++R+ A L GTK C EG CG CTV V V G
Sbjct: 1 IRFFLNGET-VTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV--GELVDGG 57
Query: 358 DSTY-SVNAC 366
Y SVNAC
Sbjct: 58 KLRYRSVNAC 67
>gnl|CDD|224991 COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small
subunit CoxS/CutS homologs [Energy production and
conversion].
Length = 156
Score = 128 bits (323), Expect = 5e-34
Identities = 62/202 (30%), Positives = 83/202 (41%), Gaps = 59/202 (29%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ T+NG + +V P T L+D +RD L GTK C G CG CTV V
Sbjct: 4 ITLTVNGEPVEL--DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV--------- 52
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
D +VN+CL L G ITT+EGL K G H VQ + QCGYC+PG +M+
Sbjct: 53 DGE-AVNSCLTLAVQAEGAEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMS- 110
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKS 201
+ L+ + T
Sbjct: 111 ---------------------------------------------ATALLD-RNPAPTDE 124
Query: 202 EVEGALGGNICRCTGFRPILDA 223
E+ AL GN+CRCTG++ I+ A
Sbjct: 125 EIREALSGNLCRCTGYQNIVAA 146
Score = 57.6 bits (140), Expect = 2e-09
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+ T+NG + +V P T L+D +RD L GTK C G CG CTV V
Sbjct: 4 ITLTVNGEPVEL--DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV 52
>gnl|CDD|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and
FAD-binding subunit A [Nucleotide transport and
metabolism].
Length = 493
Score = 134 bits (340), Expect = 5e-33
Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 17 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSH 76
D +T+RF +NG + ++VPP T L+D++R RL GTK C EG CG CTV V
Sbjct: 4 DRRNTIRFLLNGET-RVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV--GR 60
Query: 77 PVTGVDSTY-SVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSP 135
V G Y SVNAC+ + G + TVE L + H VQ + +GSQCG+C+P
Sbjct: 61 LVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTP 120
Query: 136 GMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKK 195
G VM++Y+ L M
Sbjct: 121 GFVMSLYA-------------------LWM----------------------------NS 133
Query: 196 YKVTKSEVEGALGGNICRCTGFRPILDAFQSFSC----DASDSVQRKCADI 242
+++ +E AL GN+CRCTG+RPI+ A ++ + D + + I
Sbjct: 134 PTPSRAAIEKALQGNLCRCTGYRPIIRAAEAIAALGPAAGFDPLAARRTAI 184
Score = 64.8 bits (158), Expect = 2e-10
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 293 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSH 352
D +T+RF +NG + ++VPP T L+D++R RL GTK C EG CG CTV V
Sbjct: 4 DRRNTIRFLLNGET-RVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV--GR 60
Query: 353 PVTGVDSTY-SVNAC 366
V G Y SVNAC
Sbjct: 61 LVDGGSLRYESVNAC 75
Score = 39.7 bits (93), Expect = 0.012
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 341 CGVCTVT-VTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSC----DA 395
CG CT V S + + T S A ++ N+CRCTG+RPI+ A ++ +
Sbjct: 115 CGFCTPGFVMSLYALWMNSPTPS-RAAIEKALQGNLCRCTGYRPIIRAAEAIAALGPAAG 173
Query: 396 SDSVQRKCADI 406
D + + I
Sbjct: 174 FDPLAARRTAI 184
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 117 bits (295), Expect = 1e-26
Identities = 83/347 (23%), Positives = 142/347 (40%), Gaps = 33/347 (9%)
Query: 1191 YDPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRN 1250
Y + V T+ P G R G E T +E +D +A + DP ++R+ NL
Sbjct: 323 YKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIR 382
Query: 1251 EDVKKFYQQFRGSVKYKERRDAIETFN--AVRVLISQYSLRHCFQNNRWRKRGISAVVTL 1308
+++ + D +E + A R S+ ++ + +RG+ +
Sbjct: 383 GGPFGLGRRY-------DSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYT 435
Query: 1309 FPLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQ 1368
P G A + + D TV + T +IGQG T +AQ A ELGIP + + +
Sbjct: 436 EPSGAGPGEGARVRLEA-DGTVTVRTGATDIGQGTDTVLAQIAAEELGIPPDDVEVVHGD 494
Query: 1369 NNIFPNAANTGGSTASDNAARCILLCCQELKT------RLMPYMDKGKSWEKTISDAFER 1422
++ + GS + A ++ +L M D + + D +
Sbjct: 495 TDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARMLGADAE---DVVLEDGAFK 551
Query: 1423 GVDLQVTKSVSSQQ------------TPDLLPMYTIPTAA-ATEVEVDLLTGQHQILRVD 1469
+VS ++ T P A EVEVD TG+ ++LRV
Sbjct: 552 VGGGDRRSAVSLKEVAGKGLAPGLAVAASFGSDNTYPYGAHIAEVEVDPETGEVRVLRVV 611
Query: 1470 ILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNR 1516
++D G+ +NP + GQ++G +MGIG+ +E I+D+ G LL +
Sbjct: 612 AVDDCGRVVNPKLAEGQVEGGILMGIGMALYEEAIYDED-GQLLNSN 657
Score = 80.8 bits (200), Expect = 3e-15
Identities = 66/339 (19%), Positives = 134/339 (39%), Gaps = 56/339 (16%)
Query: 737 QNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALA 796
+ + + + + D + + G+ Y +D+ Y A+ V + A+I SID + A
Sbjct: 1 ADAEIIGRSVLRADGLGKVTGKGRYADDIVAPGMLY-AAFVRSPYAHARIVSIDVSEAQG 59
Query: 797 YPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPG 856
PGV + A+++P A
Sbjct: 60 LPGVLAVITAEELP--------------------------------------AWSPVRVE 81
Query: 857 QIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDG 916
DE L A +V + G+ + A++A++ A AA++V V Y + P +D
Sbjct: 82 LAPADEVL-ARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY-EALPPVVDP------- 132
Query: 917 DKARIVEMFKLEPTATKSKFSPDSNARWEILEA-GKKLFKIKGAAEFGPQYHYTMEGQTA 975
++A + + ++ +A + +A ++ + + ME
Sbjct: 133 EEALAEDAPVIHDELNIAR-----DATFGDDDAFAAAAVVVEAPYKTPRKDPNPMEPHGV 187
Query: 976 LCVP-SEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAV 1034
+ VP D + ++A++Q ++ +A VLG+P ++V V + +GGG+G+K +
Sbjct: 188 VAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGGFGSKGVVYVEEIL 247
Query: 1035 IAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
A + V +PV+ + + E + A G R ++G
Sbjct: 248 AALA-AVVAGRPVKWIETREELFVATGHRRATLIDVKLG 285
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum hydroxylase
1. Members of this protein family show full length
homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members, however,
are found only within species that have, and near those
genes that encode, a set of predicted accessory proteins
for selenium-dependent molybdenum hydroxylases. The best
known examples of such enzymes are forms of xanthine
dehydrogenase and purine hydroxylase; this family appears
to be another such enzyme.
Length = 848
Score = 105 bits (263), Expect = 1e-22
Identities = 85/336 (25%), Positives = 141/336 (41%), Gaps = 89/336 (26%)
Query: 742 LTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVH 801
L + P++DA+ + GE YV+D+ Q+ + S + + A ++SID T+AL +PGV
Sbjct: 162 LGENFPRVDAVPKVLGEGVYVDDM-QIEGMLYGSALRSKYPRALVKSIDITVALKHPGVV 220
Query: 802 TFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFED 861
+ AKDIPG G IF+D WP I
Sbjct: 221 AVLTAKDIPGNRKI------GHIFKD--------------------------WPALIAVG 248
Query: 862 EKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARI 921
E + G + + A + ++ EA ++KV Y +
Sbjct: 249 E------ITRYVGDAVALVAAKSKEALREALNLIKVDYEE-------------------- 282
Query: 922 VEMFKLEP-TATKSKFSPDSNARWEILEAGKKLFK---IKGAAE-------FGPQYHYT- 969
L P T+ + + + A I G L + ++G AE + HY+
Sbjct: 283 -----LPPLTSPEEALAEGAPA---IHPKGNILSEEHVVRGDAEEALENSAYVVTNHYST 334
Query: 970 -------MEGQTALCVPSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGY 1022
+E ++AL VP DGV IY ++Q V Q +A +LGLP ++ V + +GGG+
Sbjct: 335 PFTEHAFLEPESALAVPEGDGVIIYTSTQGVYDEQRELASLLGLPKEKIRVINKFVGGGF 394
Query: 1023 GAKLSRSCYPAVIAAVCSNVINKPVRIVMS-IESMM 1057
G K S AA+ + +PV++ ++ ES++
Sbjct: 395 GGKEDMSVQHH--AALLAWATKRPVKVTLTRKESIL 428
Score = 83.0 bits (205), Expect = 9e-16
Identities = 56/187 (29%), Positives = 76/187 (40%), Gaps = 61/187 (32%)
Query: 40 GTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLVLVHMCGG 99
+L++F+R+ RL G K C EG CG CTV V +V AC G
Sbjct: 15 EKKLLEFLREDLRLTGVKNGCGEGACGACTVIVNGK----------AVRACRFTTAKLAG 64
Query: 100 WAITTVEGLGSKKKGYHNVQTRLATMNGS-QCGYCSPGMVMAMYSRHRLTASTMCGHNFT 158
ITTVEGL ++K +V G+ QCG+C PGMV++
Sbjct: 65 KEITTVEGLTEREK---DVYAWAFAKAGAVQCGFCIPGMVIS-----------------A 104
Query: 159 KTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFR 218
K LL K T++E++ AL GNICRCTG+
Sbjct: 105 KALL------------------------------DKNPNPTEAEIKKALKGNICRCTGYV 134
Query: 219 PILDAFQ 225
I+ A +
Sbjct: 135 KIIKAVR 141
Score = 64.9 bits (158), Expect = 3e-10
Identities = 84/354 (23%), Positives = 136/354 (38%), Gaps = 35/354 (9%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
T+ G D+ G + + D G + G + R A Y + AV T+
Sbjct: 439 TFTTGCDEAGNLTAMKADIIADTGAYASLGGPVLQRACTHAAGPYKYPNVDIRGTAVYTN 498
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN-LRNEDVKKFYQQFRGSVK 1265
P G R G + +E ++ +A V P ++R N + D Q
Sbjct: 499 NPPAGAFRGFGVTQSNFAMECNLNLLAEKVGLSPWEIRFKNAVEPGDTLPNGQVVSEGTA 558
Query: 1266 YKERRDAIETFNAVRVLISQY---SLRHCFQNNRWRKRGISAVVTLFPLGFYDVSYAILS 1322
KE T AV+ + + + F+N+ G+ +G D L+
Sbjct: 559 IKE------TLLAVKEVYEKSPCAGIACAFKNS-----GVG-------VGIPDTGRCNLA 600
Query: 1323 VFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGST 1382
V D V I TS IGQGL T + Q G+P E IV + + P++ T S
Sbjct: 601 V--EDGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASR 658
Query: 1383 ASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISDAFERGVDLQVTKSVSSQQTPDLLP 1442
S +LK L G++ + + F G +T ++S + P
Sbjct: 659 QSLFTGEATRRAAAKLKEALR-----GRTLAELEGEEF-YGEYHSITDPLNSDKEN---P 709
Query: 1443 MYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIG 1496
+ + AT+V +L ++ +V D G++INP GQI+G +MG+G
Sbjct: 710 VSHVGYGYATQVV--ILDDAGKVEKVVAAYDVGRAINPLNLEGQIEGGIVMGLG 761
Score = 41.0 bits (96), Expect = 0.006
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 316 GTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+L++F+R+ RL G K C EG CG CTV V
Sbjct: 15 EKKLLEFLREDLRLTGVKNGCGEGACGACTVIV 47
Score = 38.3 bits (89), Expect = 0.036
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 668 LTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
L + P++DA+ + GE YV+D+ Q+ + S + ++ A ++SID T+AL
Sbjct: 162 LGENFPRVDAVPKVLGEGVYVDDM-QIEGMLYGSALRSKYPRALVKSIDITVAL 214
>gnl|CDD|236637 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.
Length = 759
Score = 100 bits (250), Expect = 3e-21
Identities = 85/356 (23%), Positives = 138/356 (38%), Gaps = 35/356 (9%)
Query: 1188 ASIYDPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN 1247
A +Y ++ + V T+ P+ G R GA +V +E ++D AT + DP + R+ N
Sbjct: 332 AYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRN 391
Query: 1248 LRNEDVKKFYQ-QFRGSVKYKER-RDAIETFNAVRVLISQYSLRHCFQNNRWRKR-GISA 1304
++ G Y + +E R + R +N + R G+
Sbjct: 392 A----AREGDANPLSGKRIYSAGLPECLEKG---RKIFEWDKRRAECKNQQGNLRRGVGV 444
Query: 1305 VVTLFPLGFYDVSYAILS---VFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEK 1361
+ G + V I + +D TV + + EIGQG T +Q A +GIP+
Sbjct: 445 ACFSYTSGTWPVGLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSD 504
Query: 1362 I-VLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPY---MDKGKSWEKTIS 1417
+ V+ ++ P S S A I ELK +++ + M + I
Sbjct: 505 VRVISTQDTDVTPFDPGAYASRQSYVAGPAIRKAALELKEKILAHAAVMLHQSAMNLDII 564
Query: 1418 DAF--------------ERGVDLQVTKSVSSQQTPDLLPMYTI--PTAAAT--EVEVDLL 1459
D E +D Q T + T P T +VEVD+
Sbjct: 565 DGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTTTNPPAFGCTFVDVEVDIA 624
Query: 1460 TGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
+ I R+ + D+G +NP + GQ+ G MGIG FE I D++TG +
Sbjct: 625 LCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDEKTGVVRNP 680
Score = 67.0 bits (164), Expect = 5e-11
Identities = 72/330 (21%), Positives = 135/330 (40%), Gaps = 53/330 (16%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
K + ++DAI + G A+Y +D ++ +A V + K++SID+ A + PGV
Sbjct: 5 KSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAV 63
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+D+P ++ P A G + + + +DI + L
Sbjct: 64 FTWEDVP--DIPFPTA--GHPWSLDPNH---------RDIADRAL--------------- 95
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDG------D 917
V G + A++A + +A +A K++KV Y + D + + +G
Sbjct: 96 --LTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY-EELPVITDPEAALAEGAPPIHNG 152
Query: 918 KARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALC 977
+ +++ + N + I A +++G E H ME T+
Sbjct: 153 RGNLLKQSTMST----------GNVQQTIKAADY---QVQGHYETPIVQHCHMENVTSYA 199
Query: 978 VPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIA 1036
+DG + I +++Q +V+ V LG+P +V V +GGG+G K + A
Sbjct: 200 YMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKVRVIKPYVGGGFGNK-QDVLEEPLAA 258
Query: 1037 AVCSNVINKPVRIVMSIESMMGALGGRYPV 1066
+ S V +PV++ +S E A R+
Sbjct: 259 FLTSKVGGRPVKVSLSREECFLATRTRHAF 288
Score = 30.8 bits (70), Expect = 7.4
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
K + ++DAI + G A+Y +D ++ +A V + K++SID+ A
Sbjct: 5 KSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEAR 55
>gnl|CDD|132237 TIGR03193, 4hydroxCoAred, 4-hydroxybenzoyl-CoA reductase, gamma
subunit. 4-hydroxybenzoyl-CoA reductase converts
4-hydroxybenzoyl-CoA to benzoyl-CoA, a common
intermediate in the degradation of aromatic compounds.
This protein family represents the gamma chain of this
three-subunit enzyme.
Length = 148
Score = 90.7 bits (225), Expect = 6e-21
Identities = 52/190 (27%), Positives = 73/190 (38%), Gaps = 58/190 (30%)
Query: 37 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLVLVHM 96
V LVD++RD L GTK C G CG CTV V AC L H
Sbjct: 15 VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGR----------PRLACSTLAHR 64
Query: 97 CGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHN 156
G + TVEGL + + +Q G+QCG+C+PGM+MA + R S
Sbjct: 65 VAGRKVETVEGLATNGR-LSRLQQAFHERLGTQCGFCTPGMIMAAEALLRRNPSP----- 118
Query: 157 FTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTG 216
++ E+ AL GN+CRCTG
Sbjct: 119 ------------------------------------------SRDEIRAALAGNLCRCTG 136
Query: 217 FRPILDAFQS 226
+ I+++ ++
Sbjct: 137 YVKIIESVEA 146
Score = 41.4 bits (97), Expect = 7e-04
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 313 VPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
V LVD++RD L GTK C G CG CTV V
Sbjct: 15 VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV 50
>gnl|CDD|132242 TIGR03198, pucE, xanthine dehydrogenase E subunit. This gene has
been characterized in B. subtilis as the Iron-sulfur
cluster binding-subunit of xanthine dehydrogenase
(pucE), acting in conjunction with pucC, the FAD-binding
subunit and pucD, the molybdopterin binding subunit. The
more common XDH complex (GenProp0640) includes the xdhA
gene as the Fe-S cluster binding component.
Length = 151
Score = 90.3 bits (224), Expect = 7e-21
Identities = 57/201 (28%), Positives = 81/201 (40%), Gaps = 61/201 (30%)
Query: 23 RFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVD 82
RFT+NG + + A P TRL D +R +L GTK C G CG C+V +
Sbjct: 5 RFTVNGQAWEVAAV--PTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGK------- 55
Query: 83 STYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMY 142
NACL + + G ITT+EG+ + QT G QCGYC+PGMV+A+
Sbjct: 56 ---LANACLTMAYQADGHEITTIEGI--AENELDPCQTAFLEEGGFQCGYCTPGMVVAL- 109
Query: 143 SRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSE 202
K L + + + +
Sbjct: 110 ----------------KALFRE------------------------------TPQPSDED 123
Query: 203 VEGALGGNICRCTGFRPILDA 223
+E L GN+CRCTG+ I+ +
Sbjct: 124 MEEGLSGNLCRCTGYGGIIRS 144
Score = 44.1 bits (104), Expect = 8e-05
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 299 RFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
RFT+NG + + A P TRL D +R +L GTK C G CG C+V +
Sbjct: 5 RFTVNGQAWEVAAV--PTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI 52
>gnl|CDD|214971 smart01008, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain. Aldehyde oxidase
catalyses the conversion of an aldehyde in the presence
of oxygen and water to an acid and hydrogen peroxide.
The enzyme is a homodimer, and requires FAD, molybdenum
and two 2FE-2S clusters as cofactors. Xanthine
dehydrogenase catalyses the hydrogenation of xanthine to
urate, and also requires FAD, molybdenum and two 2FE-2S
clusters as cofactors. This activity is often found in a
bifunctional enzyme with xanthine oxidase activity too.
The enzyme can be converted from the dehydrogenase form
to the oxidase form irreversibly by proteolysis or
reversibly through oxidation of sulphydryl groups.
Length = 107
Score = 87.6 bits (218), Expect = 2e-20
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 41/145 (28%)
Query: 757 GEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAI 816
GEA Y +D +L A+VV + A+I+SID++ A A PGV + AKD+PG N
Sbjct: 2 GEARYGDD-IRLPGMLHAAVVRSPVAHARIKSIDTSAARAMPGVVAVLTAKDVPGLND-- 58
Query: 817 PAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQI 876
G + DE + A+++V + GQ
Sbjct: 59 --------------------------------------FGPLGPDEPVLADDKVRYVGQP 80
Query: 877 IGAIIADNFKSAYEAAKMVKVVYSD 901
+ A++A+ ++A +AA+ VKV Y +
Sbjct: 81 VAAVVAETEEAARDAAEAVKVEYEE 105
Score = 30.2 bits (69), Expect = 2.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 683 GEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
GEA Y +D +L A+VV + A+I+SID++ A
Sbjct: 2 GEARYGDD-IRLPGMLHAAVVRSPVAHARIKSIDTSAAR 39
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 87.7 bits (218), Expect = 2e-20
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 37/147 (25%)
Query: 757 GEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAI 816
GEA YV+D+P + + V + + A+I+SID++ ALA PGV + AKD+PG N I
Sbjct: 2 GEAVYVDDIP-APGNLYLAFVRSTKAHARIKSIDTSAALALPGVVAVITAKDLPGLNRGI 60
Query: 817 PAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQI 876
A P E + L A+++V F GQ
Sbjct: 61 GAPNPLD------------------------------------EPDALLADDKVRFVGQP 84
Query: 877 IGAIIADNFKSAYEAAKMVKVVYSDVK 903
I A++AD+ ++A +AA++VKV Y ++
Sbjct: 85 IAAVVADDEETARDAAELVKVEYEELP 111
Score = 31.4 bits (72), Expect = 0.81
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 683 GEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL----VSCAMSQGSEDFETKQN 738
GEA YV+D+P + + V + + A+I+SID++ AL V ++ ++D
Sbjct: 2 GEAVYVDDIP-APGNLYLAFVRSTKAHARIKSIDTSAALALPGVVAVIT--AKDLPGLNR 58
Query: 739 LWPLTKPLPKIDAITQCAGEAEYVND 764
PL + DA+ + +V
Sbjct: 59 GIGAPNPLDEPDALL-ADDKVRFVGQ 83
>gnl|CDD|236910 PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit;
Provisional.
Length = 217
Score = 86.7 bits (215), Expect = 6e-19
Identities = 47/120 (39%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPV 78
S V +NG + EV T L+D +R++ L GTK C G CG CTV V
Sbjct: 49 ISPVTLKVNGKTEQL--EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRR-- 104
Query: 79 TGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMV 138
+NACL L M G ITT+EGLGS H +Q +G QCGYC+PG +
Sbjct: 105 --------LNACLTLAVMHQGAEITTIEGLGSPDN-LHPMQAAFVKHDGFQCGYCTPGQI 155
Score = 45.5 bits (108), Expect = 6e-05
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
S V +NG + EV T L+D +R++ L GTK C G CG CTV V
Sbjct: 49 ISPVTLKVNGKTEQL--EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLV 100
Score = 30.5 bits (69), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 197 KVTKSEVEGALGGNICRCTGFRPILDAFQ 225
++T E+ + GNICRC + IL+A +
Sbjct: 182 ELTADEIRERMSGNICRCGAYSNILEAIE 210
>gnl|CDD|201981 pfam01799, Fer2_2, [2Fe-2S] binding domain.
Length = 75
Score = 80.6 bits (200), Expect = 2e-18
Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 48/123 (39%)
Query: 104 TVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLL 163
TVEGL K H VQ QCGYC+PGMVMA
Sbjct: 1 TVEGLAEDGKL-HPVQQAFVEHGAVQCGYCTPGMVMAAT--------------------- 38
Query: 164 QMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDA 223
+ LE T+ E+ AL GN+CRCTG+R I+DA
Sbjct: 39 -------------------------ALLERNP-DPTEEEIREALSGNLCRCTGYRRIVDA 72
Query: 224 FQS 226
+
Sbjct: 73 VKR 75
Score = 38.2 bits (90), Expect = 0.002
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 374 NICRCTGFRPILDAFQS 390
N+CRCTG+R I+DA +
Sbjct: 59 NLCRCTGYRRIVDAVKR 75
>gnl|CDD|132240 TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has
been characterized in B. subtilis as the molybdopterin
binding-subunit of xanthine dehydrogenase (pucD), acting
in conjunction with pucC, the FAD-binding subunit and
pucE, the FeS-binding subunit. The more common XDH
complex (GenProp0640) includes the xdhB gene which is
related to pucD. It appears that most of the relatives of
pucD outside of this narrow clade are involved in other
processes as they are found in unrelated genomic
contexts, contain the more common XDH complex and/or do
not appear to process purines to allantoin.
Length = 768
Score = 86.2 bits (213), Expect = 7e-17
Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 21/251 (8%)
Query: 832 PGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEA 891
GV V A D+PG G I D+ +FA +E+ +AG I A+ A++ + A A
Sbjct: 59 EGVQAMVTAADVPGLARF------GIIIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAA 112
Query: 892 AKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGK 951
++V Y ++ P D + +Q D + E + A PD E AG
Sbjct: 113 LAAIEVDYEELA-PMDDPDKALQP-DAEPLHEAGNILHEAEFRHGDPD-----EGFAAGD 165
Query: 952 KLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNR 1010
+F+ E G Q H + + AL +P+ DG D+ AA+Q +E +A +P +
Sbjct: 166 TVFE--DQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEK 223
Query: 1011 VNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYAT 1069
+ + +GG +G K + AA+ + PV+I ES +G + R+P T
Sbjct: 224 IRITLAGMGGAFGGKDDLNIQIH--AALLALASGLPVKIAQDRKESFLGGI-HRHPAKIT 280
Query: 1070 YEIG-TIGGNL 1079
++ G GNL
Sbjct: 281 FKHGADADGNL 291
Score = 72.4 bits (177), Expect = 1e-12
Identities = 82/354 (23%), Positives = 122/354 (34%), Gaps = 56/354 (15%)
Query: 1202 AVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRN-EDVKKFYQQF 1260
+V T+ G R G ++T E +D +A + DP D+R N R D+ +
Sbjct: 335 SVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDLGPLEHRI 394
Query: 1261 RGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWR---------KRGISAVVTLFPL 1311
E +AI + + I + + R R +RG A + +
Sbjct: 395 AAPDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRLQRGTGAAIAMHGG 454
Query: 1312 GFYD------VSYAILSVFRRDATVAITTSG--IEIGQGLHTKVAQACAYELGIPIEKIV 1363
GF + V+ A L + D TV I E GQG Q ELG E I
Sbjct: 455 GFGEGMDDAAVAGARLEL-AEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDIS 513
Query: 1364 LKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRL---------MPYMDKGKSWEK 1414
+ A P A ++ S + + I C +L +P E
Sbjct: 514 IAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLKARAAETAGLPAEVVEAPAEN 573
Query: 1415 TISDAFERGVD-----LQVTKSVSSQQTPDLLPMYTI---PT------------------ 1448
I A E D L+V + ++ P + PT
Sbjct: 574 LIPGAAEIVGDKNEAALRVPLAEAAADGP-IAAETAFHDFPTSALDADVGQGDGHFAFAA 632
Query: 1449 -AAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFE 1501
AAA EV+VDL G +++ G +NP GQI+G M +GL E
Sbjct: 633 AAAAAEVDVDLDLGDVKLIDCAHAIAAGPVLNPLALRGQIEGGAAMALGLALME 686
>gnl|CDD|182139 PRK09908, PRK09908, xanthine dehydrogenase subunit XdhC;
Provisional.
Length = 159
Score = 72.3 bits (177), Expect = 2e-14
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 59/203 (29%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
T+ TING+ + + PGT L + +R+ L K C G CG CTV V T
Sbjct: 8 TIECTINGMPFQL--HAAPGTPLSELLREQG-LLSVKQGCCVGECGACTVLVDG----TA 60
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
+DS CL L G I T+EG K H VQ A QCG+C+PG++MA
Sbjct: 61 IDS------CLYLAAWAEGKEIRTLEGEAKGGKLSH-VQQAYAKSGAVQCGFCTPGLIMA 113
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
+ A ++ +T
Sbjct: 114 T---TAMLAKP------------------------------------------REKPLTI 128
Query: 201 SEVEGALGGNICRCTGFRPILDA 223
+E+ L GN+CRCTG++ I++
Sbjct: 129 TEIRRGLAGNLCRCTGYQMIVNT 151
Score = 33.4 bits (76), Expect = 0.40
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 356
T+ TING+ + + PGT L + +R+ L K C G CG CTV V T
Sbjct: 8 TIECTINGMPFQL--HAAPGTPLSELLREQG-LLSVKQGCCVGECGACTVLVDG----TA 60
Query: 357 VDS 359
+DS
Sbjct: 61 IDS 63
>gnl|CDD|132238 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reductase, alpha
subunit. This model represents the largest chain, alpha,
of the enzyme 4-hydroxybenzoyl-CoA reductase. In species
capable of degrading various aromatic compounds by way of
benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA
to benzoyl-CoA.
Length = 746
Score = 74.5 bits (183), Expect = 3e-13
Identities = 68/336 (20%), Positives = 122/336 (36%), Gaps = 61/336 (18%)
Query: 746 LPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVH 805
+P +D + + G+A+Y DL ++ + A+I +ID++ A A PGV V
Sbjct: 1 VPLVDGVEKVTGKAKYTADLAAPGALV-GRILRSPHAHARILAIDTSEAEALPGVIAVVT 59
Query: 806 AKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLF 865
D P +P A +E
Sbjct: 60 GADCPVPYGVLPIAE----------------------------------------NEYPL 79
Query: 866 AENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD---VKTPK--LDIKQIVQDGDKAR 920
A ++V + G + A+ A + +A +A ++KV Y + PK + I+ +K
Sbjct: 80 ARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEYEELPAYMDPKAAMKAGAILLHDNKPG 139
Query: 921 IVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCV-- 978
+E ++F + A E +K F H ME L
Sbjct: 140 NIE------REVHNEFGDVAAAFAEADLIREKTF------TCAEVNHAHMEPNATLAEYD 187
Query: 979 PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAV 1038
P + + + +Q V +A L + + R+ V +GGG+GA++ + +IA +
Sbjct: 188 PVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFGARVEPLNF-EIIAGL 246
Query: 1039 CSNVINKPVRIVMSIESMMGALGGRYPVYATYEIGT 1074
+ VR++ + E GR Y +IG
Sbjct: 247 LARKAKGTVRLLQTREETFITHRGRPQTYVKMKIGL 282
Score = 64.1 bits (156), Expect = 5e-10
Identities = 88/423 (20%), Positives = 147/423 (34%), Gaps = 96/423 (22%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASI----------YDPSTF 1196
K G+ K+G I + G G G +I YD
Sbjct: 277 KMKIGLKKDGKITACAAEVVQRGG----------AYAGYGIVTILYAGALLHGLYDIPAV 326
Query: 1197 RVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKF 1256
+ V T+ P G R G + A E ++D +A + DP +R NL
Sbjct: 327 KYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAPT--- 383
Query: 1257 YQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCF----QNNRWRK--------RGISA 1304
T N +RV+ Y L C Q + W + RG+
Sbjct: 384 -----------------VTMNDLRVM--SYGLPECLEKVEQASGWEERKGRLPKGRGLGI 424
Query: 1305 VVTLF------PLGFYDVSYAILSV-FRRDATVAITTSGIEIGQGLHTKVAQACAYELGI 1357
+ F P+ F +A +++ D + + T +IGQG T +Q A LG+
Sbjct: 425 ACSHFVSGSAKPIHFTGEPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGV 484
Query: 1358 PIE--KIV-----LKPAQNNIFPNAANTGGSTASDNAAR---CILLCCQELKTRLMPY-- 1405
+ +++ L P N + + A+ +AA +L+ K
Sbjct: 485 RLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLVAAAAKKLDAREEDI 544
Query: 1406 ------------MDKGKSWEKTISDAF-------ERGVDLQVTKSVSSQQTPDLL---PM 1443
D G S+++ + A +G + ++ +
Sbjct: 545 ECAGEMFFVSGSADPGLSFQEVVKAALVDSGTITVKGTYTCPPEFQGGKKRGGAVGSTMG 604
Query: 1444 YTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQ 1503
++ A EV VD TG+ + +V + D G++INP GQ+QGA MG+G E
Sbjct: 605 FSY-AAQVVEVSVDEETGKVTVHKVWVAVDCGKAINPLAVEGQVQGAVWMGMGQALSEET 663
Query: 1504 IHD 1506
++D
Sbjct: 664 VYD 666
>gnl|CDD|216208 pfam00941, FAD_binding_5, FAD binding domain in molybdopterin
dehydrogenase.
Length = 171
Score = 64.1 bits (157), Expect = 1e-11
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 517 IWYIVTEVREIFEIFDGLEANQTYMLVGGNTGYGVY---RPRVPVDVYIQIRDIKELRQI 573
+Y + E + L LV G T G R P V I I I ELR I
Sbjct: 4 TYYRPASLEEALAL---LAKGPDAKLVAGGTSLGPEMKLRLARP-PVLIDINGIPELRGI 59
Query: 574 FTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMKDHLEQVAHYAVRNFA 627
+ +G+A TLT+ +D A + + L ++A +RN A
Sbjct: 60 EETGDGLEIGAAVTLTDLIDSPLVAEVFPA-------LAEALRKIASPQIRNVA 106
Score = 37.9 bits (89), Expect = 0.015
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 1073 GTIGGNLSIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYL 1121
TIGGN++ + SD+ L + AT+ +R G +TV E++
Sbjct: 106 ATIGGNIA----NASPISDLPPALLALDATVELRSPEG-RRTVPLEDFF 149
>gnl|CDD|131469 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrogenase, large
subunit. This model represents the large subunits of
group of carbon-monoxide dehydrogenases that include
molybdenum as part of the enzymatic cofactor. There are
various forms of carbon-monoxide dehydrogenase;
Salicibacter pomeroyi DSS-3, for example, has two forms.
Note that, at least in some species, the active site Cys
is modified with a selenium attached to (rather than
replacing) the sulfur atom. This is termed
selanylcysteine, and created post-translationally, in
contrast to selenocysteine incorporation during
translation as for many other selenoproteins [Energy
metabolism, Other].
Length = 770
Score = 64.6 bits (157), Expect = 3e-10
Identities = 80/321 (24%), Positives = 127/321 (39%), Gaps = 85/321 (26%)
Query: 757 GEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAI 816
G+ YV+D+ +L +V + A+I+SID++ A A PGV + A D+ NL
Sbjct: 8 GKGNYVDDV-KLPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLKPLNL-- 64
Query: 817 PAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQI 876
W + D +A + A+ +V F Q
Sbjct: 65 --HWMPTLAGDVQA---------------------------------VLADEKVLFQNQE 89
Query: 877 IGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTA----- 931
+ ++A + A +A ++V+V Y + +V D KA LEP A
Sbjct: 90 VAFVVAKDRYVAADAIELVEVDYEPL--------PVVIDPFKA-------LEPDAPVLRE 134
Query: 932 -TKSKFSPDSNAR--------WEI--LEAGKKLFKIKGAAEFGPQYHYTMEG------QT 974
K K + AR WEI A +F AE + T +T
Sbjct: 135 DLKGKTTGAHGARKHHNHIFRWEIGDKAATDAVF---AKAEVVVKQMMTYPRVHPSPLET 191
Query: 975 ALCVPSEDGVD----IYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSC 1030
CV S D + ++ Q +++ V+ + GLP +++ V + IGGG+G K+
Sbjct: 192 CGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIRVISPDIGGGFGNKV--GI 249
Query: 1031 YPA-VIAAVCSNVINKPVRIV 1050
YP V A V S V+ PV+ V
Sbjct: 250 YPGYVCAIVASIVLGVPVKWV 270
Score = 55.3 bits (133), Expect = 3e-07
Identities = 87/368 (23%), Positives = 136/368 (36%), Gaps = 62/368 (16%)
Query: 1177 GFLHVRFGLGQASIYDPSTFRVVANAVRTDKPTYG--FTRSPGACEVTAFIEHVMDHIAT 1234
GF ++ G YD + V T+K G + S E IE +D +A
Sbjct: 326 GFFNICTG-----SYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQ 380
Query: 1235 VVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFNAVRVLISQ--YSLRHCF 1292
+ D D+RI N ++ +QF + D+ + A++ + Y
Sbjct: 381 RLEMDSADLRIKNF----IQP--EQFPYTAPLGWEYDSGDYPLAMKKAMDTVDYHQLRAE 434
Query: 1293 QNNRWRKRGISAVVTLFPLGFYDVSYA--------ILSVFRRD-ATVAITTSGIEI---- 1339
Q + RKRG + + + F+ IL V D + I +G I
Sbjct: 435 QAAK-RKRGETRELMGIGISFFTEIVGAGPSKNCDILGVGMFDSCEIRIHPTGSAIARMG 493
Query: 1340 ----GQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCC 1395
GQG T AQ A ELGIP E I+++ + P T GS ++ A L
Sbjct: 494 TKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPVAGAATALAA 553
Query: 1396 QELKTR-------LMPYMDKGKSWEKTISDAFERGVDLQVTKSV------SSQQTPDLL- 1441
+++K + ++ + W+ D F D K++ + P L
Sbjct: 554 RKIKAKAQMIAAHMLEVHEGDLEWDV---DRFRVKGDPSKFKTMADIAWAAYNSPPPGLE 610
Query: 1442 -----------PMYTIPTAAA-TEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQG 1489
P T P A V++D+ TG ++ R L+D G INP I GQI G
Sbjct: 611 PGLEAVNYYDPPNMTYPFGAYFCVVDIDVDTGVAKVRRFYALDDCGTRINPMIIEGQIHG 670
Query: 1490 AFIMGIGL 1497
G +
Sbjct: 671 GLTEGFAV 678
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase,
molybdenum-binding subunit. Our comparative genomics
suggests this protein family to be a subunit of a
selenium-dependent molybdenum hydroxylase, although the
substrate is not specified. This protein is suggested by
Bebien, et al., to be the molybdenum-binding subunit of a
molydbopterin-containing selenate reductase. Xi, et al,
however, show that mutation of this gene in E. coli
conferred sensitivity to adenine, suggesting a defect in
purine interconversion. This finding, plus homology of
nearby genes in a 23-gene purine catabolism region in E.
coli to xanthine dehydrogase subunits suggests xanthine
dehydrogenase activity.
Length = 951
Score = 55.0 bits (132), Expect = 3e-07
Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 26/236 (11%)
Query: 1293 QNNRWRKRGISAVVTLFPLGFYDVSYAILSV-FRRDATVAITTSGIEIGQGLHTKVAQAC 1351
W+ G + + G D+ A + D T + + G +IG GL T V++
Sbjct: 636 AKGDWKI-GRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLT 694
Query: 1352 AYELGIPIEKIVLKPAQNNIFP---NAANTGGSTASDNAARC--------ILLCCQELKT 1400
A L P++ + + + A + G+ S NAA+ IL E+
Sbjct: 695 AEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKRAAENLREKILFHGAEMLG 754
Query: 1401 R-------LMPYMDKGKSWEKTISD---AFERGVDLQVTKSVSSQQTPDLLPMYTIPTAA 1450
P + +GK+ E + D E G S T + Y A
Sbjct: 755 EPVADVDLAAPGLVRGKTGEVSYFDIAHKAETGTGFGQLVGTGSYITSEFAFPYG---AN 811
Query: 1451 ATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHD 1506
EV V+ TG+ ++ + L D G +NP + +GQI GA + IG E ++D
Sbjct: 812 FAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATMRAIGHSMTEEIVYD 867
Score = 43.8 bits (103), Expect = 8e-04
Identities = 81/328 (24%), Positives = 131/328 (39%), Gaps = 79/328 (24%)
Query: 734 ETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSID 790
E + +L + K PKIDA + YV D ++ + A V+ R P A I +D
Sbjct: 160 EFRDDLTIIGKNCPKIDAAKMVQAKPCYVED--RVPAD--ACVIKMLRSPHPHAWITHLD 215
Query: 791 STLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAI 850
+ A A PGV VH V T ++ DI
Sbjct: 216 VSKAEALPGV---VH----------------------------VITHLNCPDIYYTPGGQ 244
Query: 851 PAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIK 910
A P + D ++F + ++ G + A++A++ + A A K+++V Y DV TP + I
Sbjct: 245 SAPEPSPL--DRRMFGQ-KMRHVGDRVAAVVAESEEIALHALKLIEVEY-DVLTPVMSID 300
Query: 911 QIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKL---FKI----------- 956
+ + +A IV + A + NA G+ + F I
Sbjct: 301 EAM--AAEAPIVHDEPIVYGAGAPDDLEEQNA--NADPRGEHMIINFPIGSRPRKNIAAS 356
Query: 957 ---------KGAAEFGPQYHYTMEGQTALCVPSE--------DG--VDIYAASQWVTLVQ 997
KG AE T E A P+E DG + I+A++Q V+
Sbjct: 357 VHGHIGDLNKGFAEADVIIERTYESTQAQQCPTETHICFTYMDGERLVIHASTQVPWHVR 416
Query: 998 ESVAGVLGLPNNRVNVKTRRIGGGYGAK 1025
VA ++G+ ++V+V R+GGG+G+K
Sbjct: 417 RQVARIVGMKQHKVHVIKERVGGGFGSK 444
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 52.5 bits (126), Expect = 2e-06
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 31/212 (14%)
Query: 1327 DATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFP---NAANTGGSTA 1383
D T + + G +IG GL T V + A L P + + + + A + G+
Sbjct: 674 DGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCF 733
Query: 1384 SDNAARCILLCCQELKTRLM------------------PYMDKGKSWEKT---ISDAFER 1422
S NAAR L + L+ +++ P + +GK E + I+ E
Sbjct: 734 SGNAAR---LAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGET 790
Query: 1423 GVDLQVTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAI 1482
G S TPD Y A EV V+ TG+ ++ + L D G +NP +
Sbjct: 791 GTGFGSLVGTGSYITPDFAFPYG---ANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPEL 847
Query: 1483 DIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
+GQI GA + IG E I+D G LT
Sbjct: 848 ALGQIYGATLRAIGHSMSEEIIYDAE-GHPLT 878
Score = 41.7 bits (98), Expect = 0.003
Identities = 69/327 (21%), Positives = 122/327 (37%), Gaps = 77/327 (23%)
Query: 734 ETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSID 790
+ +L + K PK DA + YV D +++ + A V+ R P A I +D
Sbjct: 164 TFRDDLEVIGKHYPKTDAAKMVQAKPCYVED--RVTAD--ACVIKMLRSPHAHALITHLD 219
Query: 791 STLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAI 850
+ A A PGV + + P I GQ +
Sbjct: 220 VSKAEALPGVVHVITHLNCPD----IYYTPGGQSAPEPSPL------------------- 256
Query: 851 PAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIK 910
D ++F + ++ G + A++A++ + A EA K++ V Y +V P + I
Sbjct: 257 ----------DRRMFGK-KMRHVGDRVAAVVAESEEIALEALKLIDVEY-EVLKPVMSID 304
Query: 911 QIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKL--FKI------------ 956
+ + + A +V + A D N+ + F I
Sbjct: 305 EAMAED--APVVHDEPVVYVAGAPDTLEDDNSHAAQRG-EHMIINFPIGSRPRKNIAASI 361
Query: 957 --------KGAAEFGPQYHYTMEGQTALCVPSE--------DG--VDIYAASQWVTLVQE 998
KG A+ T A P+E DG + I+A++Q ++
Sbjct: 362 HGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRMDGDRLVIHASTQVPWHLRR 421
Query: 999 SVAGVLGLPNNRVNVKTRRIGGGYGAK 1025
VA ++G+ ++V+V R+GGG+G+K
Sbjct: 422 QVARLVGMKQHKVHVIKERVGGGFGSK 448
>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions.
The family includes plant and algal ferredoxins, which
act as electron carriers in photosynthesis and
ferredoxins, which participate in redox chains (from
bacteria to mammals). Fold is ismilar to thioredoxin.
Length = 84
Score = 43.9 bits (104), Expect = 3e-05
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
V + G + EVP G L+D R+ A + Y CR G CG C V V
Sbjct: 1 VTINVPGSGVEV--EVPEGETLLDAARE-AGI-DIPYSCRAGACGTCKVEVVEGEVDQSD 56
Query: 82 DST--------YSVNACLVLV 94
S V AC V
Sbjct: 57 PSLLDEEEAEGGYVLACQTRV 77
Score = 42.8 bits (101), Expect = 5e-05
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
V + G + EVP G L+D R+ A + Y CR G CG C V V
Sbjct: 1 VTINVPGSGVEV--EVPEGETLLDAARE-AGI-DIPYSCRAGACGTCKVEVVE 49
>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain.
Length = 77
Score = 43.7 bits (103), Expect = 3e-05
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 300 FTINGVVYIIGAEVPPGTRLVDFIRDYARLKG--TKYMCREGGCGVCTVTVTSSHPVTGV 357
TI+G I EVP G + D A G Y CR GGCG C V V
Sbjct: 1 VTIDGKGVTI--EVPDGETTLL---DAAEEAGIDIPYSCRGGGCGTCAVKVLEGEVQ--S 53
Query: 358 DSTYSVNACGDRCFTRNICRC 378
D ++ + + C+
Sbjct: 54 DQSFLEDDELAAGYVVLACQT 74
Score = 43.3 bits (102), Expect = 3e-05
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 24 FTINGVVYIIGAEVPPGTRLVDFIRDYARLKG--TKYMCREGGCGVCTVTVTSSHPVTG- 80
TI+G I EVP G + D A G Y CR GGCG C V V +
Sbjct: 1 VTIDGKGVTI--EVPDGETTLL---DAAEEAGIDIPYSCRGGGCGTCAVKVLEGEVQSDQ 55
Query: 81 -------VDSTYSVNACLVLV 94
+ + Y V AC
Sbjct: 56 SFLEDDELAAGYVVLACQTYP 76
>gnl|CDD|226013 COG3482, COG3482, Uncharacterized conserved protein [Function
unknown].
Length = 237
Score = 35.1 bits (81), Expect = 0.19
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 1258 QQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKR 1300
R ++R DA+ ++ L S L F +R+
Sbjct: 187 VFLRSGAVDQKRADALLALRQLKGLASVGPLVPQFVATLFRQD 229
>gnl|CDD|205570 pfam13392, HNH_3, HNH endonuclease.
Length = 46
Score = 30.5 bits (70), Expect = 0.45
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 1227 HVMDHIATVVNRDPTDVRIANLR 1249
HV+DH + + ++ R NLR
Sbjct: 19 HVVDHK----DGNKSNNRPDNLR 37
>gnl|CDD|222362 pfam13753, SWM_repeat, Putative flagellar system-associated repeat.
This family appears to be a repeated unit that can
occur up to 29 times in these outer membrane proteins.
It is putatively associated with a novel flagellar
system.
Length = 310
Score = 32.9 bits (75), Expect = 1.3
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 2 ATLIIVPILLPRLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCR 61
T+ + I L S+TV FT NG V A T GT +
Sbjct: 137 PTVTVTGISADDLIGGESATVTFTFNGSVTGFDAN---DT-------LTITSNGTLGLTA 186
Query: 62 EGGCGVCTVTVTSSHPVTGVDSTYSVNA 89
G GV T TVT + D+T VNA
Sbjct: 187 VGTDGVWTATVTPRDLTSIADNTIRVNA 214
Score = 32.9 bits (75), Expect = 1.3
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 278 ATLIIVPILLPRLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCR 337
T+ + I L S+TV FT NG V A T GT +
Sbjct: 137 PTVTVTGISADDLIGGESATVTFTFNGSVTGFDAN---DT-------LTITSNGTLGLTA 186
Query: 338 EGGCGVCTVTVTSSHPVTGVDSTYSVNA 365
G GV T TVT + D+T VNA
Sbjct: 187 VGTDGVWTATVTPRDLTSIADNTIRVNA 214
>gnl|CDD|212581 cd11708, DHR2_DOCK5, Dock Homology Region 2, a GEF domain, of Class A
Dedicator of Cytokinesis 5. Dock5 is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It functions upstream of Rac1 to regulate osteoclast
function. DOCK proteins are divided into four classes
(A-D) based on sequence similarity and domain
architecture; class A includes Dock1, 2 and 5. All DOCKs
contain two homology domains: the DHR-1 (Dock homology
region-1), also called CZH1 (CED-5, Dock180, and
MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
Docker). The DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of Dock5, which
contains the catalytic GEF activity for Rac and/or Cdc42.
Class A DOCKs, like Dock5, are specific GEFs for Rac and
they contain an SH3 domain at the N-terminal region and a
PxxP motif at the C-terminus.
Length = 400
Score = 32.6 bits (74), Expect = 1.8
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 1396 QELKTRL----MPYMDKGKSWEKTI 1416
QELK RL + + DKGK WEK I
Sbjct: 57 QELKERLYQEIISFFDKGKMWEKAI 81
>gnl|CDD|173093 PRK14630, PRK14630, hypothetical protein; Provisional.
Length = 143
Score = 31.3 bits (71), Expect = 1.9
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 844 PGKNLAIPAAWPGQIFEDEK--LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD 901
PG N I + +IFE +K L +N+ E G I+ A AD+F ++ K V V+YSD
Sbjct: 80 PGINRKIKSDREFKIFEGKKIKLMLDNDFE-EGFILEAK-ADSFIFKTDS-KEVNVLYSD 136
Query: 902 VKTPKL 907
VK KL
Sbjct: 137 VKKAKL 142
>gnl|CDD|177230 MTH00179, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 227
Score = 31.8 bits (73), Expect = 2.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 146 RLTASTMCGHNFTKTLLLQMY---CIFLPPFSLEVLFVILLIFVIVSFLE 192
RLTA+ GH LL+ + L F V + LL+ +++ LE
Sbjct: 160 RLTANITAGH-----LLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLE 204
>gnl|CDD|148740 pfam07305, DUF1454, Protein of unknown function (DUF1454). This
family consists of several Enterobacterial sequences of
around 200 residues in length which are often known as
YiiQ proteins. The function of this family is unknown.
Length = 200
Score = 31.4 bits (71), Expect = 2.4
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 631 STTEVSPSLWSGARMIQIERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVND 690
TT +P L GA + ++SQ E F N P T PL + AI +A
Sbjct: 28 DTTVTAPYLLPGAP--SFDLSISQFREKF-NADN--P-TLPLNEFRAIDSKNDKANLTRA 81
Query: 691 LPQLSEEYFASVVLAERGPAKIQSIDSTL 719
+++E +AS L ERG KI+SI T
Sbjct: 82 ASKINENLYASTAL-ERGTLKIKSIQMTW 109
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 31.3 bits (71), Expect = 3.5
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 564 IRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMKDH 614
IR+IK LRQ+ RN L T +A+D+ FEYM DH
Sbjct: 54 IREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYM----DH 100
>gnl|CDD|227916 COG5629, COG5629, Predicted metal-binding protein [Function unknown].
Length = 321
Score = 30.8 bits (69), Expect = 5.7
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 1258 QQFRGSVKYKERRDAIETF-NAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFYDV 1316
G V Y +F NA L + S+R F R+ K I T D+
Sbjct: 156 ADLEGKVAYGPNFKLHCSFCNARLGLPNDSSIRKLF---RYNKEVIPNGCTKIHPHE-DL 211
Query: 1317 SYAILSVFRRDATV 1330
+Y+ L+ + RD V
Sbjct: 212 AYSYLNAYFRDKNV 225
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 29.9 bits (68), Expect = 7.7
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 1454 VEVDLLTGQHQILRVDILED---TGQSINPAIDIGQIQGAFIMGI 1495
+E + G+ +V ++ED TG SI A++ + GA ++G+
Sbjct: 105 IEGGEVKGE----KVVVVEDVITTGGSILEAVEALREAGAEVVGV 145
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 29.3 bits (66), Expect = 7.8
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 1254 KKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQN--------NRWRKRGISAV 1305
+ GS K AV + + +R + NRW KR S V
Sbjct: 60 GSTFTVETGSPLSKALYKIKLQ--AVTLYMLGLGIRDIARTLGISINTVNRWSKRFGSRV 117
Query: 1306 VTLFPLGFYDV 1316
L L Y +
Sbjct: 118 EGLRLLTVYSL 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 76,996,983
Number of extensions: 7677915
Number of successful extensions: 6762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6677
Number of HSP's successfully gapped: 130
Length of query: 1520
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1410
Effective length of database: 6,058,662
Effective search space: 8542713420
Effective search space used: 8542713420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.0 bits)