RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7003
(1520 letters)
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 485 bits (1250), Expect = e-147
Identities = 213/820 (25%), Positives = 337/820 (41%), Gaps = 174/820 (21%)
Query: 726 MSQGSEDFETKQNL----WPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADR 781
+ F+ N + +PLP + A Q +GEA Y +D+P+ E F +V + R
Sbjct: 553 PPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTR 612
Query: 782 GPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAK 841
AKI+SID + A PG F+ A DIPG N
Sbjct: 613 AHAKIKSIDVSEAQKVPGFVCFLSADDIPGSN---------------------------- 644
Query: 842 DIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD 901
G +F DE +FA++ V G IIGA++AD + A AA +VKV Y D
Sbjct: 645 ------------ETG-LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYED 691
Query: 902 VKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAE 961
+ + I+ +++ + K+E K FS N + G
Sbjct: 692 LP-AIITIEDAIKNN--SFYGSELKIEKGDLKKGFSEADN-------------VVSGELY 735
Query: 962 FGPQYHYTMEGQTALCVPS-EDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIG 1019
G Q H+ +E + +P E+G ++++ ++Q Q VA +LG+P NR+ V+ +R+G
Sbjct: 736 IGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMG 795
Query: 1020 GGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNL 1079
GG+G K +RS +V A+ + PVR ++ M GGR+P A Y++G
Sbjct: 796 GGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVG------ 849
Query: 1080 SIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLSIDMNKKVITYITFCPLI 1139
F +V + G S D++ ++ F +
Sbjct: 850 --------FMKT----GTIVALEVDHYSNAG----------NSRDLSHSIMERALFH--M 885
Query: 1140 KNSYYLRTYKCGVDKNGVIQNLSTV-----FNVDKGMTLNENGFLHVRFGLGQASIYDPS 1194
N Y + + NLS+ F + + + EN V G
Sbjct: 886 DNCYKIPNIR--GTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL----PAE 939
Query: 1195 TFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVK 1254
R N + ++T F + + V
Sbjct: 940 EVR-WKNMYKEG-------------DLTHFNQRLEGFS--------------------VP 965
Query: 1255 KFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF- 1313
+ + + S +Y R+ ++ FN N W+KRG+ + T F + F
Sbjct: 966 RCWDECLKSSQYYARKSEVDKFNK---------------ENCWKKRGLCIIPTKFGISFT 1010
Query: 1314 ---YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNN 1370
+ + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI + N
Sbjct: 1011 VPFLNQAGALIHVY-TDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTN 1069
Query: 1371 IFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGVDLQV 1428
PN++ T S ++D + + CQ + RL P+ K SWE + A++ V L
Sbjct: 1070 TVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLST 1129
Query: 1429 TKSVSSQQTPDLLP----------MYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSI 1478
T +TP+L Y A +EVE+D LTG H+ LR DI+ D G S+
Sbjct: 1130 T---GFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSL 1186
Query: 1479 NPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
NPAIDIGQ++GAF+ G+GL+T E + G+L T
Sbjct: 1187 NPAIDIGQVEGAFVQGLGLFTLEELHYSP-EGSLHTRGPS 1225
Score = 222 bits (567), Expect = 8e-59
Identities = 70/216 (32%), Positives = 101/216 (46%), Gaps = 48/216 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 61 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 120
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYK 197
VM+MY+ L + +
Sbjct: 121 VMSMYT-----------------------------------------------LLRNQPE 133
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFSCDASD 233
T E+E A GN+CRCTG+RPIL F++F+ +
Sbjct: 134 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFAKNGGC 169
Score = 97.6 bits (243), Expect = 2e-20
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 294 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 353
T+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 2 TADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 60
Query: 354 VTGVDSTYSVNAC 366
+ +S NAC
Sbjct: 61 LQDKIIHFSANAC 73
Score = 84.5 bits (209), Expect = 2e-16
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 518 WYIVTEVREIFEIFDGLEANQTYMLVGGNTGYGVYR--PRVPVDVYIQIRDIKELRQIFT 575
W + ++E+ ++ + LV GNT G+ + I I EL +
Sbjct: 236 WIQASTLKELLDLK---AQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEH 292
Query: 576 RNGYVLMGSATTLTEAMDYFDRTSKT--DANFEYMRIMKDHLEQVAHYAVRNFA 627
+ G+A L+ E R + + L A V++ A
Sbjct: 293 GPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVA 346
Score = 72.2 bits (177), Expect = 1e-12
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 634 EVSPSLWSGARMIQIERAMSQGSEDFETKQNL----WPLTKPLPKIDAITQCAGEAEYVN 689
++ P+ S + Q + + F+ N + +PLP + A Q +GEA Y +
Sbjct: 537 KLDPTYTSATLLFQ--KDPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCD 594
Query: 690 DLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
D+P+ E F +V + R AKI+SID + A
Sbjct: 595 DIPRYENELFLRLVTSTRAHAKIKSIDVSEAQ 626
Score = 46.0 bits (109), Expect = 1e-04
Identities = 15/132 (11%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 1023 GAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIK 1082
GA + S + + + + + + + G+ + ++GGN+
Sbjct: 300 GAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGK----QVKSVASLGGNIITA 355
Query: 1083 HEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLS-----IDMNKKVITYITFCP 1137
SD+ + G +TI + + ++++ I P
Sbjct: 356 S----PISDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLSI-EIP 410
Query: 1138 LIKNSYYLRTYK 1149
+ + +K
Sbjct: 411 YSREDEFFSAFK 422
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 315 bits (809), Expect = 4e-92
Identities = 114/401 (28%), Positives = 176/401 (43%), Gaps = 49/401 (12%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
YK G K G I L + G + + + + R + Y R +T+
Sbjct: 275 RYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTN 334
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL-RNEDVKKFYQQFRGSV- 1264
+ R G + E+ M +A +VR N+ + D+ F Q+ G
Sbjct: 335 LSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSV 394
Query: 1265 -----------KYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF 1313
+Y R+ ++ FN N W+KRG+ + T F + F
Sbjct: 395 PRCWDECLKSSQYYARKSEVDKFNK---------------ENCWKKRGLCIIPTKFGISF 439
Query: 1314 ----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQN 1369
+ + A++ V+ D +V ++ G E+GQGLHTK+ Q + L IPI KI +
Sbjct: 440 TVPFLNQAGALIHVYT-DGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETST 498
Query: 1370 NIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGK--SWEKTISDAFERGVDLQ 1427
N PN++ T S ++D + + CQ + RL P+ K SWE + A++ V L
Sbjct: 499 NTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLS 558
Query: 1428 VTKSVSSQQTPDLLP--------MYTIPT--AAATEVEVDLLTGQHQILRVDILEDTGQS 1477
T TP+L + T A +EVE+D LTG H+ LR DI+ D G S
Sbjct: 559 TTGFYR---TPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSS 615
Query: 1478 INPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
+NPAIDIGQ++GAF+ G+GL+T E + G+L T
Sbjct: 616 LNPAIDIGQVEGAFVQGLGLFTLEELHYSP-EGSLHTRGPS 655
Score = 264 bits (676), Expect = 1e-74
Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 59/335 (17%)
Query: 741 PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGV 800
+ +PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A PG
Sbjct: 2 TVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGF 61
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
F+ A DIPG N G +F
Sbjct: 62 VCFLSADDIPGSN----------------------------------------ETG-LFN 80
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
DE +FA++ V G IIGA++AD + A AA +VKV Y D+ + I+ +++ +
Sbjct: 81 DETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLP-AIITIEDAIKNN--SF 137
Query: 921 IVEMFKLEPTATKSKFSPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVP- 979
K+E K FS EA + G G Q H+ +E + +P
Sbjct: 138 YGSELKIEKGDLKKGFS----------EAD---NVVSGELYIGGQDHFYLETHCTIAIPK 184
Query: 980 SEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAV 1038
E+G ++++ ++Q Q VA +LG+P NR+ V+ +R+GGG+G K +RS +V A+
Sbjct: 185 GEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVAL 244
Query: 1039 CSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+ PVR ++ M GGR+P A Y++G
Sbjct: 245 AAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 279
Score = 63.5 bits (155), Expect = 4e-10
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 667 PLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
+ +PLP + A Q +GEA Y +D+P+ E F +V + R AKI+SID + A
Sbjct: 2 TVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQ 56
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 287 bits (738), Expect = 2e-82
Identities = 102/437 (23%), Positives = 174/437 (39%), Gaps = 82/437 (18%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
Y+ G D +G + V G + + + + R L Y R+ ++ +RT+
Sbjct: 275 RYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTN 334
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNED-------------- 1252
+ R G + +E ++H+A + RDP ++R N +
Sbjct: 335 TQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEP 394
Query: 1253 -------------------VKKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQ 1293
+ + + + S + RR I +N+
Sbjct: 395 IATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNS--------------- 439
Query: 1294 NNRWRKRGISAVVTLFPLGF----YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQ 1349
NR RGI+ F + F + + A++ ++ D +VA+ G E+GQGLH K+ Q
Sbjct: 440 TNRTLARGIALSPVKFGISFTLTHLNQAGALVQIY-TDGSVALNHGGTEMGQGLHAKMVQ 498
Query: 1350 ACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYM--- 1406
A LGI ++ + + PN + T S+ +D + C+ L+ RL ++
Sbjct: 499 VAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAR 558
Query: 1407 ------------------DKGKSWEKTISDAFERGVDLQVT------KSVSSQQTPDLLP 1442
K + + ++ A+ + L T K + P
Sbjct: 559 EGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRP 618
Query: 1443 MYTIPTAAA-TEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFE 1501
AA TEV +D LTG+++ILR DIL D G S+NPA+DIGQI+GA++ G G T E
Sbjct: 619 FLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTE 678
Query: 1502 HQIHDKRTGALLTNRTW 1518
+ D G L+T+
Sbjct: 679 ELVWDH-CGRLMTHAPS 694
Score = 259 bits (663), Expect = 1e-72
Identities = 84/337 (24%), Positives = 127/337 (37%), Gaps = 69/337 (20%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
KPLP A G+A Y++DLP + + L+ A I +D PGV
Sbjct: 5 KPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAV 64
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
A D+P N E
Sbjct: 65 FTAADLPHDN----------------------------------------DASPAPSPEP 84
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+ A EV F GQ I + A + ++A AA+ ++ Y + L + Q +
Sbjct: 85 VLATGEVHFVGQPIFLVAATSHRAARIAARKARITY-APRPAILTLDQALAAD------- 136
Query: 924 MFKLEPTATKSKFSPDSNARWEILEAG--KKLFK-----IKGAAEFGPQYHYTMEGQTAL 976
S+F I G + +G E G Q H+ +EGQ AL
Sbjct: 137 ----------SRFEGGPV----IWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAAL 182
Query: 977 CVPSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIA 1036
+P+E GV I+ +SQ + +Q VA LGL + V V+ RR+GGG+G K S+ + A+
Sbjct: 183 ALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIAC 242
Query: 1037 AVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
AV + +P ++ + M G R+ Y IG
Sbjct: 243 AVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIG 279
Score = 56.1 bits (136), Expect = 7e-08
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
KPLP A G+A Y++DLP + + L+ A I +D
Sbjct: 5 KPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVR 56
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A
{Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A*
3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Length = 164
Score = 228 bits (583), Expect = 4e-69
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 48/211 (22%)
Query: 18 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 1 TADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 59
Query: 78 VTGVDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGM 137
+ +S NACL + A+TTVEG+GS K H VQ R+A +GSQCG+C+PG+
Sbjct: 60 LQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGI 119
Query: 138 VMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYK 197
VM+MY+ R + +
Sbjct: 120 VMSMYTLLR-----------------------------------------------NQPE 132
Query: 198 VTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 133 PTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
Score = 99.2 bits (248), Expect = 5e-24
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 294 TSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 353
T+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++
Sbjct: 1 TADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDR 59
Query: 354 VTGVDSTYSVNAC 366
+ +S NAC
Sbjct: 60 LQDKIIHFSANAC 72
Score = 47.9 bits (115), Expect = 3e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 374 NICRCTGFRPILDAFQSFS 392
N+CRCTG+RPIL F++F+
Sbjct: 145 NLCRCTGYRPILQGFRTFA 163
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 214 bits (547), Expect = 4e-57
Identities = 77/380 (20%), Positives = 130/380 (34%), Gaps = 22/380 (5%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
K K+G + + + + VD G L +R + Y+ R + V T+
Sbjct: 466 NVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGLGRTVATN 525
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKY 1266
R GA + E +MD +A + DP ++R N Q
Sbjct: 526 HVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTNPTGQEPEVFSL 585
Query: 1267 KERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFY--DVSYAILSVF 1324
+ + +R + ++ K+G+ + ++ G D S A +
Sbjct: 586 PD------MIDQLRPKYQAALEKAQKESTATHKKGVGISIGVYGSGLDGPDASEAWAEL- 638
Query: 1325 RRDATVAITTSGIEIGQGLHTKVAQACAYEL---GIPIEKIVLKPAQNNIFPNAANTGGS 1381
D T+ + T+ + GQG L G+ EKI PN+ +GGS
Sbjct: 639 NADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGS 698
Query: 1382 TASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISDAFERGVDLQVTKS-------VSS 1434
I + C+ L ++++ + + T S V+
Sbjct: 699 RQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTASGATHCDAVTG 758
Query: 1435 QQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMG 1494
P ++ MY EV VD+ TGQ + + ++ D G N GQI G G
Sbjct: 759 LGKPFVVYMYG---VFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQG 815
Query: 1495 IGLWTFEHQIHDKRTGALLT 1514
IGL E K+ L+
Sbjct: 816 IGLALSEDFEDIKKHATLVG 835
Score = 197 bits (503), Expect = 1e-51
Identities = 69/373 (18%), Positives = 130/373 (34%), Gaps = 59/373 (15%)
Query: 712 IQSIDSTLALVSCAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDL--PQLS 769
+ ++ A+++ + +F+ + P+ A+ + G +Y DL +
Sbjct: 146 VDAVMDAAAVINGKKPETDLEFKMPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKMPA 205
Query: 770 EEYFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 829
++V A A I+ ID++ AL PGVH+ + KD+ GKN
Sbjct: 206 GTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKGKNRITGL----------- 254
Query: 830 AYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAY 889
I D + + +V G I + AD+ +A
Sbjct: 255 --------------------ITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANAR 294
Query: 890 EAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNARWEILEA 949
AA+ VKV + + + ++ P P+ I++
Sbjct: 295 AAAEKVKVDL-EELPAYMSGPAAAAEDA-------IEIHPGT------PNVYFEQPIVKG 340
Query: 950 G--KKLFK-----IKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVA 1001
+F ++G G Q H +E A +DG I++ S V L +A
Sbjct: 341 EDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMGDDGKCYIHSKSIGVHLHLYMIA 400
Query: 1002 GVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMS-IESMMGAL 1060
+GL +++ + +GG +G K S + + AV + +PV + + +
Sbjct: 401 PGVGLEPDQLVLVANPMGGTFGYKFSPT--SEALVAVAAMATGRPVHLRYNYQQQQQYT- 457
Query: 1061 GGRYPVYATYEIG 1073
G R P +
Sbjct: 458 GKRSPWEMNVKFA 470
Score = 138 bits (350), Expect = 3e-33
Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 63/234 (26%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
T+NG+ + V L D +R L G K C +G CG C+V +
Sbjct: 3 QKVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-------- 52
Query: 81 VDSTYSVNACLVLVH-MCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVM 139
V AC+ + + G ITT+EG+G + H +Q G+QCG+CSPG ++
Sbjct: 53 --DGKVVRACVTKMKRVADGAQITTIEGVGQPEN-LHPLQKAWVLHGGAQCGFCSPGFIV 109
Query: 140 AMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVT 199
+ L +
Sbjct: 110 SAKG-----------------------------------------------LLDTNADPS 122
Query: 200 KSEVEGALGG--NICRCTGFRPILDAFQSFSCDASDSVQRKCADIEVRGKRDFI 251
+ +V N CRCTG++P++DA + + + ++
Sbjct: 123 REDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVINGKKPETDLEFKMPADGRIW 176
Score = 62.3 bits (152), Expect = 1e-09
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 356
T+NG+ + V L D +R L G K C +G CG C+V +
Sbjct: 3 QKVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-------- 52
Query: 357 VDSTYSVNAC 366
V AC
Sbjct: 53 --DGKVVRAC 60
Score = 45.0 bits (107), Expect = 2e-04
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 644 RMIQIERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDL--PQLSEEYFAS 701
I + +F+ + P+ A+ + G +Y DL + +
Sbjct: 152 AAAVINGKKPETDLEFKMPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKMPAGTLHLA 211
Query: 702 VVLAERGPAKIQSIDSTLAL 721
+V A+ A I+ ID++ AL
Sbjct: 212 MVQAKVSHANIKGIDTSEAL 231
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 209 bits (533), Expect = 2e-55
Identities = 82/378 (21%), Positives = 134/378 (35%), Gaps = 20/378 (5%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
T + D+ G I + T ++VD G L +R + Y + R V T+
Sbjct: 468 TMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATN 527
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKY 1266
R GA E E +MD +A + DP ++R N E Q +
Sbjct: 528 HCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSL 587
Query: 1267 KERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFY--DVSYAILSVF 1324
E F+ +R + R ++ KRG+ + ++ G D S A + +
Sbjct: 588 PE------MFDKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDGPDTSEAWVEL- 640
Query: 1325 RRDATVAITTSGIEIGQGLHTKVAQACA---YELGIPIEKIVLKPAQNNIFPNAANTGGS 1381
D +V + S + GQG LGI E I L + PN+ GGS
Sbjct: 641 NDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGS 700
Query: 1382 TASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISDAFERGVD-----LQVTKSVSSQQ 1436
+ I + C+ L + + + ++ D Q
Sbjct: 701 RSQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPAKDCDAKGQG 760
Query: 1437 TPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIG 1496
+P MY TEV V++ TG+ + ++ + D G+ N + GQI G G+G
Sbjct: 761 SPFACYMYG---LFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVG 817
Query: 1497 LWTFEHQIHDKRTGALLT 1514
L E K+ +
Sbjct: 818 LALSEDYEDLKKHSTMGG 835
Score = 186 bits (474), Expect = 3e-48
Identities = 62/373 (16%), Positives = 121/373 (32%), Gaps = 57/373 (15%)
Query: 712 IQSIDSTLALVSCAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEE 771
+ ++ A++ + F+ + +P+ A+ + G AE+ D E
Sbjct: 146 VDAVMDAAAILRGEKTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPE 205
Query: 772 --YFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 829
++ A A I+ ID++ A PGV+ + KD+ GKN
Sbjct: 206 NTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKVLTHKDVKGKN---------------- 249
Query: 830 AYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAY 889
G+ TF K + + ++++ G + + AD+ +A
Sbjct: 250 RITGLITFPTNKGDG---------------WERPILNDSKIFQYGDALAIVCADSEANAR 294
Query: 890 EAAKMVKVVYSDVKTPKLDIKQIVQDG------DKARIVEMFKLEPTATKSKFSPDSNAR 943
AA+ VK ++ + + + + E +
Sbjct: 295 AAAEKVKFDL-ELLPEYMSAPEAMAPDAIEIHPGTPNVYYDQLEE--------KGEDTVP 345
Query: 944 WEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVAG 1002
+ A +G+ Q H +E +E G V I++ S + L +A
Sbjct: 346 FFNDPA---NVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAP 402
Query: 1003 VLGLPNNRVN-VKTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMS-IESMMGAL 1060
LGL + + GG +G K S + + V +P + + +
Sbjct: 403 GLGLEFPKDLVLVQNTTGGTFGYKFSPT--MEALVGVAVMATGRPCHLRYNYEQQQNYT- 459
Query: 1061 GGRYPVYATYEIG 1073
G R P + T
Sbjct: 460 GKRSPFWTTMRYA 472
Score = 135 bits (342), Expect = 3e-32
Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 63/234 (26%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
T +NG+ + V P LVD +R +L K C +G CG CTV +
Sbjct: 3 TKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-------- 52
Query: 81 VDSTYSVNACLVLVH-MCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVM 139
V AC++ + + ++TT+EG+G+ H +Q +QCG+C+PG ++
Sbjct: 53 --DGKVVRACIIKMSRVAENASVTTLEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIV 109
Query: 140 AMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVT 199
+ LL + +
Sbjct: 110 SAK-----------------ALLDE------------------------------NVAPS 122
Query: 200 KSEVEGALGG--NICRCTGFRPILDAFQSFSCDASDSVQRKCADIEVRGKRDFI 251
+ +V NICRCTG++P++DA + + ++
Sbjct: 123 REDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILRGEKTVEEISFKMPADGRIW 176
Score = 61.5 bits (150), Expect = 2e-09
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 356
T +NG+ + V P LVD +R +L K C +G CG CTV +
Sbjct: 3 TKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-------- 52
Query: 357 VDSTYSVNAC 366
V AC
Sbjct: 53 --DGKVVRAC 60
Score = 44.2 bits (105), Expect = 3e-04
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 644 RMIQIERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEE--YFAS 701
+ + F+ + +P+ A+ + G AE+ D E +
Sbjct: 152 AAAILRGEKTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLA 211
Query: 702 VVLAERGPAKIQSIDSTLAL 721
+ A+ A I+ ID++ A
Sbjct: 212 LAQAKVSHALIKGIDTSEAE 231
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Length = 462
Score = 190 bits (483), Expect = 5e-52
Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 59/233 (25%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ F +NG + P L++++R L GTK C EG CG CTV +
Sbjct: 3 IAFLLNGETRRV-RIEDPTQSLLEWLRA-EGLTGTKEGCNEGDCGACTVMIR------DA 54
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAM 141
+ +VNACL+++ G A+ T+EG+ + H VQ + +GSQCG+C+PG +++M
Sbjct: 55 AGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSM 114
Query: 142 YSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTKS 201
+ H +
Sbjct: 115 AAAHDRD---------------------------------------------------RK 123
Query: 202 EVEGALGGNICRCTGFRPILDAFQSFSCDASDSVQRKCADIEVRGKRDFISHE 254
+ + L GN+CRCTG+ PIL A ++ + + + A + + +
Sbjct: 124 DYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVRGQ 176
Score = 84.5 bits (209), Expect = 7e-17
Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 69/183 (37%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 357
+ F +NG + P L++++R L GTK C EG CG CTV +
Sbjct: 3 IAFLLNGETRRV-RIEDPTQSLLEWLRA-EGLTGTKEGCNEGDCGACTVMIR------DA 54
Query: 358 DSTYSVNA----------------------------------------CG---------- 367
+ +VNA CG
Sbjct: 55 AGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSM 114
Query: 368 -----------DRCFTRNICRCTGFRPILDAFQSFSCDASDSVQRKCADIEVRGKRDFIS 416
D N+CRCTG+ PIL A ++ + + + A + +
Sbjct: 115 AAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEPPADWLQADAAFTLAQLSSGVR 174
Query: 417 HEG 419
+
Sbjct: 175 GQT 177
Score = 43.3 bits (102), Expect = 5e-04
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 1072 IGTIGGNLSIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLSIDMNK---- 1127
+ TIGGN++ D L +GA++T+R + + +L
Sbjct: 278 VATIGGNIANGS----PIGDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRPG 333
Query: 1128 KVITYITFCPLIKNSYYLRTYK 1149
+ + +T P K++ LR YK
Sbjct: 334 EFVESVTL-P--KSAPGLRCYK 352
Score = 31.0 bits (70), Expect = 3.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 420 LPEPEYDPTYRKNLAVSLFYK 440
L + YR N A ++ +
Sbjct: 425 LSDMRASAAYRMNAAQAMALR 445
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding, oxidoreductase;
HET: MCN FAD; 2.20A {Eubacterium barkeri}
Length = 425
Score = 183 bits (468), Expect = 2e-50
Identities = 69/340 (20%), Positives = 124/340 (36%), Gaps = 71/340 (20%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
K K+D++ + G A++ D + +A V + A+I S+D + A A GV
Sbjct: 10 KNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVEAV 68
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ IPGKN G I +DE
Sbjct: 69 LDYHAIPGKNRF----------------------------------------GIIIKDEP 88
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVE 923
+++V G I + A EA + + Y + +++ +++ + +
Sbjct: 89 CLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEY-EELEGIFTMERALEED--SPAIH 145
Query: 924 MFKLEPTATKSKFSPDSN-ARWEILEAG--KKLFK-----IKGAAEFGPQYHYTMEGQTA 975
D+N + + LE G FK ++ H +E
Sbjct: 146 --------------GDTNIHQVKHLEYGDVDAAFKQCDIVVEDTYSTHRLTHMFIEPDAG 191
Query: 976 LCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAV 1034
+ +G + + ++Q + VAG+L LPN++V + GGG+G KL S
Sbjct: 192 VSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGGGFGGKLDLSV--QC 249
Query: 1035 IAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYATYEIG 1073
A+ + KPV++V S ES + R+P+ + G
Sbjct: 250 HCALLTYHTKKPVKMVRSREESTTVS-SKRHPMTMHCKTG 288
Score = 59.9 bits (146), Expect = 4e-09
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 1/123 (0%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
K G K+G +Q + D G + + R + Y RV A V T+
Sbjct: 284 HCKTGATKDGRLQAVQVEMFGDTGAYASYGPAVITRATVHCMGPYVVPNVRVDAKFVYTN 343
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN-LRNEDVKKFYQQFRGSVK 1265
P G R G + + E M+ +A + DP D+RI N + Q SV
Sbjct: 344 NPMSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNAHQVGAKLATGQVLENSVG 403
Query: 1266 YKE 1268
E
Sbjct: 404 LIE 406
Score = 43.7 bits (104), Expect = 4e-04
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
K K+D++ + G A++ D + +A V + A+I S+D + A
Sbjct: 10 KNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKAR 60
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding, oxidoreductase;
HET: MCN FAD; 2.20A {Eubacterium barkeri}
Length = 330
Score = 151 bits (383), Expect = 4e-40
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 35/252 (13%)
Query: 1298 RKRGISAVVTLFPLGFY---DVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYE 1354
+KRG + +G + + A + + D + + +IGQG T +AQ A E
Sbjct: 2 KKRGKGVGSMWYGIGNTGLPNPAAAFVEI-HGDGSANVMFGAADIGQGSGTAMAQIAAEE 60
Query: 1355 LGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYM-------- 1406
LG+ EKI + + P+ T S + ++L C++ K L
Sbjct: 61 LGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAP 120
Query: 1407 ----------------DKGKSWEKTISDAFERGVDLQVTKSVSSQQTP-DLLPMYTIPT- 1448
++ ++ + ++ G S + T M IP
Sbjct: 121 EELSFRDNTVFITADPERSMTYGELMAAMKAAGRMAVGAGSYNPNTTGLAPENMSGIPFE 180
Query: 1449 -----AAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQ 1503
EVEVD TG+ +L+V D G IN ++ GQI+G MG G E
Sbjct: 181 VYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQGFVLMEEI 240
Query: 1504 IHDKRTGALLTN 1515
+ + GA+
Sbjct: 241 EVNTKNGAIKNP 252
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2
PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Length = 166
Score = 135 bits (343), Expect = 9e-37
Identities = 57/206 (27%), Positives = 82/206 (39%), Gaps = 59/206 (28%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
+ TING A V P T L+ FIR+ L G C CG CTV + G
Sbjct: 5 HIELTINGHPV--EALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLD------G 56
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
+ SV +C + G +ITT+EG+ + +Q M+G QCGYC+PGM+M
Sbjct: 57 M----SVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIM- 111
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
+ + N P T+
Sbjct: 112 -------RSHRLLQEN---------------P------------------------SPTE 125
Query: 201 SEVEGALGGNICRCTGFRPILDAFQS 226
+E+ +GGN+CRCTG++ I+ A Q
Sbjct: 126 AEIRFGIGGNLCRCTGYQNIVKAIQY 151
Score = 66.4 bits (163), Expect = 1e-12
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+ TING A V P T L+ FIR+ L G C CG CTV +
Sbjct: 5 HIELTINGHPV--EALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL 54
Score = 32.9 bits (76), Expect = 0.38
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 374 NICRCTGFRPILDAFQS 390
N+CRCTG++ I+ A Q
Sbjct: 135 NLCRCTGYQNIVKAIQY 151
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 160
Score = 134 bits (341), Expect = 1e-36
Identities = 52/203 (25%), Positives = 68/203 (33%), Gaps = 60/203 (29%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
T+ +NG P RL+D +R+ L K C EG CG CTV G
Sbjct: 5 TINLNLNGEAR--SIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVI------FNG 56
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
V C +L I T+EG+ K +Q QCGYC+PGM++
Sbjct: 57 D----PVTTCCMLAGQADESTIITLEGVAEDGK-PSLLQQCFLEAGAVQCGYCTPGMILT 111
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
K LL K T
Sbjct: 112 -----------------AKALL------------------------------DKNPDPTD 124
Query: 201 SEVEGALGGNICRCTGFRPILDA 223
E+ A+ GN+CRCTG+ I A
Sbjct: 125 EEITVAMSGNLCRCTGYIKIHAA 147
Score = 67.9 bits (167), Expect = 4e-13
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
T+ +NG P RL+D +R+ L K C EG CG CTV
Sbjct: 5 TINLNLNGEAR--SIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF 54
Score = 32.9 bits (76), Expect = 0.37
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 374 NICRCTGFRPILDA 387
N+CRCTG+ I A
Sbjct: 134 NLCRCTGYIKIHAA 147
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1
d.15.4.2 PDB: 1sb3_C*
Length = 161
Score = 133 bits (337), Expect = 5e-36
Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 60/206 (29%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
+R T+NG VP L+D++R+ L GTK C G CG CTV V
Sbjct: 4 ILRLTLNGRAR--EDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVL------VDD 55
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
AC L H G + TVE L ++ +Q G+QCG+C+PGM+MA
Sbjct: 56 R----PRLACSTLAHQVAGKKVETVESLATQGT-LSKLQAAFHEKLGTQCGFCTPGMIMA 110
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
++ LL K ++
Sbjct: 111 -----------------SEALL------------------------------RKNPSPSR 123
Query: 201 SEVEGALGGNICRCTGFRPILDAFQS 226
E++ AL GN+CRCTG+ I+ + ++
Sbjct: 124 DEIKAALAGNLCRCTGYVKIIKSVET 149
Score = 67.2 bits (165), Expect = 7e-13
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+R T+NG VP L+D++R+ L GTK C G CG CTV V
Sbjct: 4 ILRLTLNGRAR--EDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV 53
Score = 32.9 bits (76), Expect = 0.34
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 374 NICRCTGFRPILDAFQS 390
N+CRCTG+ I+ + ++
Sbjct: 133 NLCRCTGYVKIIKSVET 149
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 130 bits (329), Expect = 6e-35
Identities = 56/206 (27%), Positives = 77/206 (37%), Gaps = 60/206 (29%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
+ +NG V P T L+ F+R+ L G C CG CTV + G
Sbjct: 5 IITVNVNGKAQ--EKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDID------G 56
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
SV +C L C G + TVEGL +K H VQ +G QCG+C+PGM+M
Sbjct: 57 R----SVKSCTHLAVQCDGSEVLTVEGLANKGV-LHAVQEGFYKEHGLQCGFCTPGMLM- 110
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
A N P T+
Sbjct: 111 -------RAYRFLQEN---------------P------------------------NPTE 124
Query: 201 SEVEGALGGNICRCTGFRPILDAFQS 226
+E+ + GN+CRCTG++ I+ A Q
Sbjct: 125 AEIRMGMTGNLCRCTGYQNIVKAVQY 150
Score = 66.4 bits (163), Expect = 1e-12
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+ +NG V P T L+ F+R+ L G C CG CTV +
Sbjct: 5 IITVNVNGKAQ--EKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI 54
Score = 32.9 bits (76), Expect = 0.39
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 374 NICRCTGFRPILDAFQS 390
N+CRCTG++ I+ A Q
Sbjct: 134 NLCRCTGYQNIVKAVQY 150
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 130 bits (329), Expect = 7e-35
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 64/222 (28%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
+ TING V P L D +R+ L GTK C +G CG CT+ + G
Sbjct: 11 RISATINGKPR--VFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTIL------IDG 62
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMA 140
+ +CL L G +I TVEGL +K + +Q + QCG+C+ GM+
Sbjct: 63 A----PMRSCLTLAVQAEGCSIETVEGLSQGEK-LNALQDSFRRHHALQCGFCTAGMLAT 117
Query: 141 MYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSFLEGKKYKVTK 200
A ++ N P ++
Sbjct: 118 --------ARSILAEN--------------P-------------------------APSR 130
Query: 201 SEVEGALGGNICRCTGFRPILDAFQSFSCDASDSVQRKCADI 242
EV + GN+CRCTG+ I+DA D + + + ++
Sbjct: 131 DEVREVMSGNLCRCTGYETIIDAIT----DPAVAEAARRGEV 168
Score = 65.7 bits (161), Expect = 2e-12
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTV 348
+ TING V P L D +R+ L GTK C +G CG CT+ +
Sbjct: 11 RISATINGKPR--VFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI 60
Score = 33.3 bits (77), Expect = 0.33
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 374 NICRCTGFRPILDAFQSFSCDASDSVQRKCADI 406
N+CRCTG+ I+DA D + + + ++
Sbjct: 140 NLCRCTGYETIIDAIT----DPAVAEAARRGEV 168
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD FAD
SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 141 bits (358), Expect = 3e-34
Identities = 78/410 (19%), Positives = 133/410 (32%), Gaps = 52/410 (12%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTD 1206
K G+ K+G I L+ G + G +Y + A V T+
Sbjct: 291 KMKIGLKKDGKIAALALEATQAGGAYAGYGIITILYTGALMHGLYHIPAIKHDAWRVYTN 350
Query: 1207 KPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL-RNEDVKKFYQQFRGSVK 1265
P G R G + A E ++ + + D +R N+ Y Q S
Sbjct: 351 TPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQIPYVTMYAQRVMSYG 410
Query: 1266 YKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGI------SAVVTLFPLGFYDVSYA 1319
E V+ + + + R GI S T +
Sbjct: 411 VP------ECLEKVKAASGWEERKG--KLPKGRGLGIALSHFVSGTSTPKHWTGEPHATV 462
Query: 1320 ILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTG 1379
L + D + + T +IGQG +T +Q A LG+ + +I + A + + P +
Sbjct: 463 NLKL-DFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSY 521
Query: 1380 GSTASDNAARCILLCCQELKTRLMPY------------------------MDKGKSWEKT 1415
S + + +ELK L+ D G S+++
Sbjct: 522 SSRVTFMVGNASISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEV 581
Query: 1416 ISDAFERGVDLQVTKSVSSQQTPDL---------LPMYTIPTAA-ATEVEVDLLTGQHQI 1465
+ A + V + + AA E VD +TG+
Sbjct: 582 VKAAMVDSGTITVKGTYTCPTEFQGDKKIRGSAIGATMGFCYAAQVVEASVDEITGKVTA 641
Query: 1466 LRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
+V + D G+++NP GQ QG MG+G E ++D G ++
Sbjct: 642 HKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYDN--GRMVHG 689
Score = 126 bits (320), Expect = 1e-29
Identities = 67/350 (19%), Positives = 119/350 (34%), Gaps = 87/350 (24%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSIDSTLALAYPGV 800
P +D + + G+A+Y D+ + ++ R P A+I +ID++ A A GV
Sbjct: 13 VRTPLVDGVEKVTGKAKYTADI-AAPDALVGRIL---RSPHAHARILAIDTSAAEALEGV 68
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
V T + P +P A
Sbjct: 69 I-------------------------------AVCT---GAETPVPFGVLPIAE------ 88
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
+E A ++V + G + A+ A + +A +A ++KV Y +V + K ++ G A
Sbjct: 89 NEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDY-EVLPAYMTPKAAMKAG--AI 145
Query: 921 IVEMFKLEPTATKSKFSPD--SN--ARWEI----LEAGKKLFK-----IKGAAEFGPQYH 967
+ D +N + A F + F H
Sbjct: 146 ALH--------------DDKPNNILREVHAEFGDVAAA---FAEADLIREKTYTFAEVNH 188
Query: 968 YTMEGQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAK 1025
ME L P D + + +Q V VA L + + R+ V +GGG+GA+
Sbjct: 189 VHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGAR 248
Query: 1026 LSRSCYP-AVIAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYATYEIG 1073
+IA + + VR++ + E+ + G +IG
Sbjct: 249 T--EALHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRP-WTEVKMKIG 295
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET:
FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1
d.133.1.1
Length = 788
Score = 137 bits (348), Expect = 5e-33
Identities = 64/347 (18%), Positives = 118/347 (34%), Gaps = 74/347 (21%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSIDSTLALAYPGV 800
+ + + G Y+ DL LS + + R P A+I SID A A PGV
Sbjct: 16 TSVLRREDTRLLTGRGRYIADL-VLSGMLHVASL---RSPFAHARIVSIDVADAQALPGV 71
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
D+ + I A G
Sbjct: 72 ELVWCGADVAELSQGIVATMQV--------------------------------EGFQTT 99
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
+ L A F G+I+ ++A + A +AA++++V Y + I+ ++ AR
Sbjct: 100 IQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEY-EELPAVTGIEAALEGE--AR 156
Query: 921 IVEMFKLEPTATKSKFSPDSN--ARWEI----LEAGKKLFK-----IKGAAEFGPQYHYT 969
+ + N +R L F ++G G
Sbjct: 157 AND-------------TLAGNVVSRTSRARDELAPI---FASSAGVVRGQFSCGRVSACP 200
Query: 970 MEGQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLS 1027
ME + A+ + + ++ A+Q + V+ VA +P + + V+ +GGG+G K
Sbjct: 201 METRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAH 260
Query: 1028 RSCYPAVIAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYATYEIG 1073
++ + S + +PVR + E+ +GA + +
Sbjct: 261 LHPEE-LLVCLLSRALGRPVRWIEDRQENFLGATHAK-QQRNEMGLA 305
Score = 129 bits (326), Expect = 2e-30
Identities = 75/415 (18%), Positives = 128/415 (30%), Gaps = 55/415 (13%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKG--MTLNENGFLHVRFGLGQA-SIYDPSTFRVVANAV 1203
D +G L D G L + G +Y + AV
Sbjct: 301 EMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAV 360
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGS 1263
T+K G R G E ++D A + P ++R N+ + + G
Sbjct: 361 ATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPE-DFPFTNRLG- 418
Query: 1264 VKYKERRDAIETFNAVRVLISQYSLRHCFQNNR--WRKRGI------------SAVVTLF 1309
+ ++T N + +++ + R R + G+ + ++
Sbjct: 419 QTH-REGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFL 477
Query: 1310 PLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQN 1369
A + + V +TTS GQG T +AQ A LG+P +V++ +
Sbjct: 478 GTPTTTHDSATVRI-DPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAG-S 535
Query: 1370 NIFPNAANTGGSTASDNAARCILLCCQELKTRLMPY------------------------ 1405
S + A I ++ R+
Sbjct: 536 TKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGV 595
Query: 1406 MDKGKSWEKTISDAFERGVDLQVTK----SVSSQQTPDLLPMYTIPTAA-ATEVEVDLLT 1460
KG + + + A+ ++ P + A VE+D T
Sbjct: 596 PAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDP---SDLVLANGGHAAIVEIDAST 652
Query: 1461 GQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
++ +ED G INP I GQI+G IG E I+D G L+T
Sbjct: 653 YATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDD-FGQLVTT 706
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Length = 803
Score = 131 bits (331), Expect = 5e-31
Identities = 65/344 (18%), Positives = 125/344 (36%), Gaps = 59/344 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSIDSTLALAYPGV 800
+ + G+ YV+D+ ++ +V R P +I+ I ALA PGV
Sbjct: 20 ASRLRKEDARFIQGKGNYVDDI-KMPGMLHMDIV---RAPIAHGRIKKIHKDAALAMPGV 75
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
H + A+D+ + W + +
Sbjct: 76 HAVLTAEDLK----PLKLHWMPTLAG---------------------------------D 98
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
+ A+ +V F Q + +IAD+ A +A + VKV Y D +D ++ D
Sbjct: 99 VAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEY-DELPVVIDPIDALKP-DAPV 156
Query: 921 IVEMFKLEPTATKSKFSPDSN-ARWEILEAGK--KLFK-----IKGAAEFGPQYHYTMEG 972
+ E + + ++ W + +F + + + +E
Sbjct: 157 LREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLET 216
Query: 973 QTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSC 1030
+ P + + Y SQ +V+ V+ + G+P ++V + + IGGG+G K+
Sbjct: 217 CGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYP 276
Query: 1031 YPAVIAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYATYEIG 1073
V A V S V+ +PV+ V +E++ R + E+
Sbjct: 277 GY-VCAIVASIVLGRPVKWVEDRVENISTTAFAR-DYHMDGELA 318
Score = 116 bits (292), Expect = 2e-26
Identities = 81/411 (19%), Positives = 128/411 (31%), Gaps = 46/411 (11%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKG--MTLNENGFLHVRFGLGQASIYDPSTFRVVANAVR 1204
+ +G I L D G + + YD V
Sbjct: 314 DGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVY 373
Query: 1205 TDKPTYGFTR--SPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFR- 1261
T+K G S E IE ++D +A +N D ++R N ++ + QF
Sbjct: 374 TNKAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGF 433
Query: 1262 --GSVKYKERRD-AIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFYDVSY 1318
S Y ++ + + Q + R + G+ + G +
Sbjct: 434 EYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCD 493
Query: 1319 AILS--------VFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNN 1370
+ + I GQG T AQ A ELGIP E I ++ +
Sbjct: 494 ILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTS 553
Query: 1371 IFPNAANTGGSTASDNAARCILLCCQELKTRLMPY------------------------M 1406
P T GS ++ A I L +++ +
Sbjct: 554 TAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDD 613
Query: 1407 DKGKSWEKTISDAFER-GVDLQVTKSVSSQQTPDLLPMYTIPTAA-ATEVEVDLLTGQHQ 1464
K K+ A+ + L+ P P +T P V++D TG+ +
Sbjct: 614 SKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDP---PNFTYPFGIYLCVVDIDRATGETK 670
Query: 1465 ILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
+ R L+D G INP I GQI G G + + D G LL N
Sbjct: 671 VRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDA-QGNLLGN 720
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1
PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Length = 809
Score = 130 bits (329), Expect = 1e-30
Identities = 70/345 (20%), Positives = 134/345 (38%), Gaps = 61/345 (17%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGP---AKIQSIDSTLALAYPGV 800
+++ I G+ YV+D+ +L F V R A+I+SID++ A A PGV
Sbjct: 23 CKRKRVEDIRFTQGKGNYVDDV-KLPGMLFGDFV---RSSHAHARIKSIDTSKAKALPGV 78
Query: 801 HTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFE 860
V T A D+ NL P +
Sbjct: 79 F-------------------------------AVLT---AADLKPLNLHY---MPTLAGD 101
Query: 861 DEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKAR 920
+ + A+ +V F Q + ++A + A +A ++V+V Y + +D + ++ A
Sbjct: 102 VQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY-EPLPVLVDPFKAMEPD--AP 158
Query: 921 IV--EMFKLEPTATKSKFSPDSNARWEILEAGK--KLFK-----IKGAAEFGPQYHYTME 971
++ ++ A ++ + RWEI + F K + + +E
Sbjct: 159 LLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLE 218
Query: 972 GQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRS 1029
+ + + ++ Q +++ V+ + GLP ++++V IGGG+G K+
Sbjct: 219 TCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAY 278
Query: 1030 CYPAVIAAVCSNVINKPVRIVMS-IESMMGALGGRYPVYATYEIG 1073
V A V S V+ PV+ V +E++ R + T E+
Sbjct: 279 SGY-VCAVVASIVLGVPVKWVEDRMENLSTTSFAR-DYHMTTELA 321
Score = 126 bits (318), Expect = 2e-29
Identities = 80/420 (19%), Positives = 139/420 (33%), Gaps = 61/420 (14%)
Query: 1147 TYKCGVDKNGVIQNLSTVFNVDKG--MTLNENGFLHVRFGLGQASIYDPSTFRVVANAVR 1204
T + K+G I + D G + F YD + + V
Sbjct: 317 TTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVY 376
Query: 1205 TDKPTYGFT-RSP-GACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFR- 1261
T+K + G R E IE ++ +A + D D+RI N + +
Sbjct: 377 TNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGW 436
Query: 1262 --GSVKYKE--RRDAIETFNAVRVLISQYSLRHCFQNNRWRKR---GISAVV-------- 1306
S Y ++ A++T ++ Q + + F+ R+ GIS
Sbjct: 437 EYDSGNYPLAMKK-AMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPS 495
Query: 1307 -TLFPLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLK 1365
LG A + + +V GQG T AQ A ELGIP + I+++
Sbjct: 496 KNCDILGVSMFDSAEIRI-HPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIE 554
Query: 1366 PAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPY-------------------- 1405
+ P T GS ++ A + +++K +
Sbjct: 555 EGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFR 614
Query: 1406 ----MDKGKSWEKTISDAFERGVD-----LQVTKSVSSQQTPDLLPMYTIPTAA-ATEVE 1455
+K K+ ++ ++ L+ P T P A ++
Sbjct: 615 VKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDP-------PNMTYPFGAYFCIMD 667
Query: 1456 VDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTN 1515
+D+ TG + R L+D G INP I GQ+ G + + +D+ G +L
Sbjct: 668 IDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDE-QGNVLGA 726
Score = 29.9 bits (68), Expect = 9.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGP---AKIQSIDSTLAL 721
+++ I G+ YV+D+ +L F V R A+I+SID++ A
Sbjct: 23 CKRKRVEDIRFTQGKGNYVDDV-KLPGMLFGDFV---RSSHAHARIKSIDTSKAK 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.4 bits (200), Expect = 2e-15
Identities = 73/501 (14%), Positives = 150/501 (29%), Gaps = 125/501 (24%)
Query: 216 GFRPILDAFQS-----FSC-DASDSVQ-----RKCADI------EVRGKRDFISHESLGT 258
++ IL F+ F C D D + + I R F + S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 259 QLLDWAFDTLV---FSVLEFRLATLIIVPILLPRLFSDTSSTVRFTINGVVYIIGAEVPP 315
+++ + ++ + L + T P ++ R++ + N V
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYNVS- 132
Query: 316 GTR--LVDFIRDYA-RLKGTKYMCREG--GCG--VCTVTVTSSHPVTGVDSTYSVNACGD 368
R +R L+ K + +G G G + V S+ V
Sbjct: 133 --RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--------QCKMDF 182
Query: 369 RCFTRNICRCTGFRPILDAFQSFS----------CDASDSVQRKCADIEVRGKRDFISHE 418
+ F N+ C +L+ Q D S +++ + I+ R + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSK 241
Query: 419 GLPE----------PE----YDP------TYR-KNLA--VSLFYKSHINPSIHNRTVMGR 455
+ ++ T R K + +S +HI H+ +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTP 300
Query: 456 GDVRSLF--------------------FGSSTLGEV----PTRYK-LDLMGSCKLKTKLD 490
+V+SL S + E + + KL T ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 491 QS---EDSNDLDTCLIELALTPVNVNV-----EGIWYIVTEVREIFEIFDGLEANQTYML 542
S + + L++ P + ++ IW+ V + ++ + + L Y L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKL---HKYSL 416
Query: 543 VGGNTGYGVYR-PRVPVDVYIQIRDIKEL-RQIFTRNGYVLMGSATTLTEAMDYFDRTSK 600
V P + +++ +++ + L R I Y + + D D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--Y-------NIPKTFDSDDLIPP 467
Query: 601 TDANFEYMRIMKDHLEQVAHY 621
+ Y I HL+ + H
Sbjct: 468 YLDQYFYSHIG-HHLKNIEHP 487
Score = 60.3 bits (145), Expect = 5e-09
Identities = 70/499 (14%), Positives = 145/499 (29%), Gaps = 113/499 (22%)
Query: 865 FAENEVEFAGQIIGAIIADNFKS---AYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKA-- 919
F E ++ + I ++ D F + M K + S K +I I+ D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-----KEEIDHIIMSKDAVSG 63
Query: 920 --RIVEMFKLEPTATKSKFSPDS---NARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQT 974
R+ + KF + N ++ ++ K + Y +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMT--RMYIEQRD--- 117
Query: 975 ALCVPSEDGVDIYAASQWVT---LVQESVAGVLGL-PNNRVNVKTRRIG-GGYGAKLSRS 1029
+ ++A V+ + +L L P V + G G G K +
Sbjct: 118 ----RLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLID----GVLGSG-K---T 164
Query: 1030 CYPAVIAAVCSN---VINKPVRI-------VMSIESMMGALGGRYPVYATYEIGTIGGNL 1079
V VC + +I S E+++ L I N
Sbjct: 165 W---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--------QIDPNW 213
Query: 1080 SIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLSID--MNKKVITYITF-C 1136
+ + +H SS++ L + +I L+ L + N K C
Sbjct: 214 TSRSDH---SSNIKLRIH----SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 1137 P-LI--KNSYYLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFG-L-GQASIY 1191
L+ + + + + S D+ +L +L R L +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTT 325
Query: 1192 DPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRD--------PTDV 1243
+P ++A ++R T+ + ++T IE ++ + R P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 1244 RI---------ANLRNEDVKKFYQQFRGS------------------VKYKERRDAIETF 1276
I ++ DV + ++ K + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 1277 NAVRVLISQYSLRHCFQNN 1295
+ R ++ Y++ F ++
Sbjct: 446 H--RSIVDHYNIPKTFDSD 462
Score = 52.2 bits (124), Expect = 1e-06
Identities = 71/541 (13%), Positives = 144/541 (26%), Gaps = 150/541 (27%)
Query: 475 YKLDL-MGSCKLKTK--LDQSEDS--NDLDTCLIELALTPV--NVNVEGIWYI---VTEV 524
+ +D G + + K L ED+ ++ D ++ + ++ I V+
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 525 REIFEIFDGLEANQTYMLVGG--NTGYG--------VYR-PRVPVDVYIQIRD------- 566
+F + V Y R P + +YI+ RD
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 567 ------------IKELRQIFTR---NGYVL---MGSA--TTLT-EAMDYFDRTSKTDANF 605
+LRQ VL + + T + + + K D
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 606 EYMRIMKDH-----LEQVAHYAVRNFALGLSTTEVSPSLWSGARMIQIERAMSQGSEDFE 660
++ + + LE + + S S S ++I ++ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 661 TKQ---------NLWPLTKPLPK-IDAIT-QC-----AGEAEYVNDLPQLSEEYFASVVL 704
+K N+ K +A C + + L + + S+
Sbjct: 240 SKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDH 293
Query: 705 AERGPAKIQSIDSTLALVSCAMSQGSEDF--ETKQNLWPLTKPLPKIDAITQCAGEAEYV 762
D +L+ + +D E T P ++ AE +
Sbjct: 294 HSMTLTP----DEVKSLLLKYLDCRPQDLPREVLT-----TNPR----RLSII---AESI 337
Query: 763 NDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGV--HTFVHAKDIPGKNLAIPAAW 820
D + + V D+ I+S+L + P F L+
Sbjct: 338 RDGLATWDNW--KHVNCDK---LTTIIESSLNVLEPAEYRKMF--------DRLS----- 379
Query: 821 PGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAI 880
+F H IP L++ W I D + + +
Sbjct: 380 ---VFPP-----SAH-------IPTILLSL--IWFDVIKSDVMVVVN---KLHKY--SLV 417
Query: 881 IADNFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDS 940
+S + +Y ++K + + IV+ + + T P
Sbjct: 418 EKQPKESTIS----IPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPY 468
Query: 941 N 941
Sbjct: 469 L 469
Score = 51.0 bits (121), Expect = 3e-06
Identities = 72/439 (16%), Positives = 125/439 (28%), Gaps = 131/439 (29%)
Query: 1120 YLSIDMNKKVITYITFCPLIKNSYYLRTYKCGVDKNGVIQNLSTVFN---VDK--GMTLN 1174
++ + + Y + + + D V ++ + +D
Sbjct: 6 HMDFETGEHQYQYKDILSV-----FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 1175 ENGFLHVRFGL---GQASIYDPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDH 1231
+G L + F Q + + V +R + Y F +M
Sbjct: 61 VSGTLRL-FWTLLSKQEEMVQ----KFVEEVLRIN---YKF---------------LMSP 97
Query: 1232 IATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHC 1291
I T R P+ + Y E+RD +N +V ++Y
Sbjct: 98 IKTE-QRQPSMMT-------------------RMYIEQRD--RLYNDNQVF-AKY----- 129
Query: 1292 FQNNRWRKRGISAVVTLFPLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQAC 1351
N R + + A+L + R V I G+ +G G C
Sbjct: 130 ---NVSRLQPYLKLRQ-----------ALLEL-RPAKNVLI--DGV-LGSGKTWVALDVC 171
Query: 1352 -------AYELGI--------PIEKIVLKPAQN---NIFPNAANTGGSTASDNAARCILL 1393
+ I + VL+ Q I PN ++ SD+++ L
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLR 226
Query: 1394 C--CQELKTRLMPYMDKGKS-------WEKTISDAFERGV-------DLQVTKSVSSQQT 1437
Q RL+ +AF QVT +S+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 1438 PDLLPMYTIPTAAATEVEVDLLTGQHQILRVDI--LEDTGQSINPAIDIGQIQGAFIM-G 1494
+ + T EV+ LL + L L + NP + I I G
Sbjct: 287 THISLDHHSMTLTPDEVK-SLLL---KYLDCRPQDLPREVLTTNPRR-LSII-AESIRDG 340
Query: 1495 IGLW-TFEHQIHDKRTGAL 1512
+ W ++H DK T +
Sbjct: 341 LATWDNWKHVNCDKLTTII 359
Score = 37.1 bits (85), Expect = 0.052
Identities = 89/648 (13%), Positives = 176/648 (27%), Gaps = 221/648 (34%)
Query: 6 IVPILLPRLFSD--------------TSSTVRF------TINGVVYIIGAEVPPGTRLVD 45
I+ + + + + ++G + + + +V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 46 -FI-----RDY----ARLKG---------TKYM-CREGGCGVCTVTVTSSHPVTGVDSTY 85
F+ +Y + +K Y+ R+ V + + V+ +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYL 138
Query: 86 SVNACL--------VLVH-M--CGGWAITTVEGLGSKKKGYHNVQTRLAT----MNGSQC 130
+ L VL+ + G + ++ S K VQ ++ +N C
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLSYK-----VQCKMDFKIFWLNLKNC 192
Query: 131 GYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIVSF 190
SP V+ M + + + + + L
Sbjct: 193 --NSPETVLEMLQ-------KLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RL 237
Query: 191 LEGKKYK--------VTKSEVEGALGGNICRC---TGFRPILDAFQS------------- 226
L+ K Y+ V ++ A + C+ T F+ + D +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 227 -FSCDASDSVQRKCADIEVRG-------------------KRDFISH---------ESLG 257
+ D S+ K D + RD ++ + L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL- 355
Query: 258 TQLLDWAFDTLVFSVLEFRLATLII----VPI---LLPRLFSD-TSSTVRFTINGVV-YI 308
T +++ + + L + L + I LL ++ D S V +N + Y
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 309 IGAEVPPGTRLVDFIRD-YARLKGT-------------KYMCREGGCGVCTVTVTSSHPV 354
+ + P + + I Y LK Y + S +
Sbjct: 416 LVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--------SDDLI 465
Query: 355 TGVDSTYSVNACGDRCFT-RNICRCTGFRPI-LDAFQSFSCDASDSVQRKCADIEVRGKR 412
Y + G + R T FR + LD F F +++K
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-F-RF-------LEQK---------- 506
Query: 413 DFISHEGLPEPEYDPTYRKNLAVSL-FYKSHINPSIHNRTVMGRGDVRSLFFGSSTLGEV 471
I H+ N L FYK +I + + V ++
Sbjct: 507 --IRHDSTAWNA--SGSILNTLQQLKFYKPYICDNDPKYERL----VNAI---------- 548
Query: 472 PTRYKLDLMGSCKLKTKLDQSEDSNDLDTCLIELALTPVNVNVEGIWY 519
LD + + L S+ T L+ +AL + E I+
Sbjct: 549 -----LDFLPKI--EENLICSK-----YTDLLRIALMAED---EAIFE 581
Score = 33.3 bits (75), Expect = 0.78
Identities = 53/368 (14%), Positives = 102/368 (27%), Gaps = 64/368 (17%)
Query: 1 LATL--IIVPILLPRLFSDTSSTVRFTINGV----VYIIGAEVPPGTRLV-DFIRDYARL 53
L L I P R SD SS ++ I+ + ++ ++ LV +++
Sbjct: 202 LQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 54 KGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNAC-LVLVHMCGGWAITTVEGLGSKK 112
C+ + T VT D + + L H V+ L K
Sbjct: 260 NAFNLSCK-------ILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 113 KGYHNVQTRLATMNGSQCGYCSP---GMVMAMYSRHRLTASTMCGHNFTK-TLLLQMYCI 168
+ R + +P ++ T N K T +++ +
Sbjct: 311 -----LDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SL 363
Query: 169 -FLPPFSLEVLFVILLIF---------VIVSFLEGKKYK-----VTKSEVEGALGGNICR 213
L P +F L +F ++ V K +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 214 CTGFRPILDAFQSFSCDASDSVQ--RKCADIEVRGKRDFISHESLGTQLLD--WAFDTLV 269
T I + + R D + F + L LD + + +
Sbjct: 424 STIS--IPSIYLELKVKLENEYALHRSIVD-HYNIPKTF-DSDDLIPPYLDQYF-YSHIG 478
Query: 270 FSVLEFRLATLIIVPILLPRLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARL 329
+ + L +F D RF + + A G+ +++ ++
Sbjct: 479 HHLKNIEHPERM---TLFRMVFLD----FRFLEQKIRHDSTAWNASGS-ILNTLQQLKFY 530
Query: 330 KGTKYMCR 337
K Y+C
Sbjct: 531 K--PYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 1e-10
Identities = 96/612 (15%), Positives = 165/612 (26%), Gaps = 231/612 (37%)
Query: 386 DAFQSFSCDASDSVQRK---CADIEVRGKRDFISH-EGLPEPEYDPTYRKNLAVSL--FY 439
+ F + ++ E+ GK F+ + L EP + + L + L F
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEF- 91
Query: 440 KSHINPSIHNRTVMGRGDVRSLFFGSSTLGEVPTR----------YKLDLMGSCKLKTKL 489
+ D+ +L + L E T Y + K
Sbjct: 92 ---------ENCYLEGNDIHAL--AAKLLQENDTTLVKTKELIKNY---ITARIMAKRPF 137
Query: 490 DQSEDSNDLDTCLIELALTPVNVNVEGIWYIVTEVREIFEIFDGLEANQTYMLVGGNTGY 549
D+ +S L + + IF G Q GNT
Sbjct: 138 DKKSNSA-----LFRAVGEG-------------NAQ-LVAIFGG----Q------GNT-- 166
Query: 550 GVYRPRVPVDVYIQIRDIKELRQIFTRNGY-------------VLMGSATTLTEAMDYFD 596
D Y +ELR ++ Y L T +A F
Sbjct: 167 ---------DDYF-----EELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 597 R--------TSKTDA-NFEYMR--------IMKDHLEQVAHYAVRNFALGLSTTEVSPSL 639
+ + ++ + +Y+ I + Q+AHY V LG + E+ L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 640 WSG----------ARMIQIERAMSQGSEDFETK---------------QNLWPLTKPLPK 674
G A I A + E F +P T P
Sbjct: 268 -KGATGHSQGLVTAVAI----AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 675 I--DAITQCAGEAEY---VNDLPQ-------------LSEE---YFA------SVVLAER 707
I D++ G +++L Q L + ++V++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-- 380
Query: 708 GPAK-IQSIDSTLALVSCAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLP 766
GP + + ++ TL Q+ P ++ K + LP
Sbjct: 381 GPPQSLYGLNLTLRKAKAPS-------GLDQSRIPFSERKLKFS--------NRF---LP 422
Query: 767 QLSEEYF-------ASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNL----- 814
++ + + ++ D + S ++ + P TF D G +L
Sbjct: 423 -VASPFHSHLLVPASDLINKDLVKNNV-SFNAK-DIQIPVYDTF----D--GSDLRVLSG 473
Query: 815 AIPAAWPGQIFED----EKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEV 870
+I I E T H D G PG L N+
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKAT--HILDF-G---------PGGASGLGVLTHRNK- 520
Query: 871 EFAGQIIGAIIA 882
G + I+A
Sbjct: 521 --DGTGVRVIVA 530
Score = 61.2 bits (148), Expect = 2e-09
Identities = 114/728 (15%), Positives = 208/728 (28%), Gaps = 277/728 (38%)
Query: 556 VPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMKDHL 615
VP + +L++ F + L E + F + E
Sbjct: 22 VPTASFFIAS---QLQEQFNK----------ILPEPTEGFAADDEPTTPAEL-------- 60
Query: 616 EQVAHYAVRNFALGLSTTEVSPSLWSGARMIQIERAMSQGSEDFETK----QNLWPLTKP 671
V + LG ++ V PS + Q+ +FE ++ L
Sbjct: 61 --VGKF------LGYVSSLVEPS--KVGQFDQVLNLCLT---EFENCYLEGNDIHALAAK 107
Query: 672 LPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLALVSCAMS---- 727
L + + T + +L + Y + ++A+R K +S AL
Sbjct: 108 LLQENDTTLVKTK--------ELIKNYITARIMAKRPFDK--KSNS--ALFRAVGEGNAQ 155
Query: 728 -------QG-SED-FETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVL 778
QG ++D FE ++L+ L D I A L +L + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSA------ETLSELIRTTLDAEKV 208
Query: 779 ADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKN-LA-IPAAWPG----QIFEDEKAYP 832
+G ++ L P + P K+ L IP + P Q+
Sbjct: 209 FTQG------LNILEWLENPS--------NTPDKDYLLSIPISCPLIGVIQL-------- 246
Query: 833 GVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAG------QIIGAII---AD 883
H V AK + G PG++ G ++ A+ D
Sbjct: 247 -AHYVVTAK-LLGFT-------PGELRS----------YLKGATGHSQGLVTAVAIAETD 287
Query: 884 NFKSAYEAAKMVKVVYSDVKTPKLDIKQIVQDGDKARIVEMFKLEPTATKSKFSPDSNAR 943
+++S + + +
Sbjct: 288 SWESFFVSVR-------------------------------------------------- 297
Query: 944 WEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDGVDIYAASQWVTLVQESVAGV 1003
+ + LF I G A P+ S +++++S+
Sbjct: 298 -KAITV---LFFI-GV-----------RCYEA--YPN--------TSLPPSILEDSLENN 331
Query: 1004 LGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSN----------VINKPVRIVMS- 1052
G+P+ +++ L++ + S+ ++N +V+S
Sbjct: 332 EGVPSPMLSIS----N------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 1053 -IESMMG---AL-GGRYPVYATYEIGTIGGNLS-IKH--EHPEFSSDVFL---------L 1095
+S+ G L + P G + S I +FS+ FL L
Sbjct: 382 PPQSLYGLNLTLRKAKAP---------SGLDQSRIPFSERKLKFSN-RFLPVASPFHSHL 431
Query: 1096 LEVVGATITIRDTFGLEQTVSPEEYLSIDMNKKVITYITFCPLIKNSYYLRTYKCGVDKN 1155
L I +D + + ++ + I V Y TF + LR + +
Sbjct: 432 LVPASDLI-NKDLVKNNVSFNAKD-IQI----PV--YDTF-----DGSDLRVLSGSISER 478
Query: 1156 GVIQNLSTVFNVDKGMTLNENGFLHV-RFGLGQAS--------IYDPSTFRVVANAVRTD 1206
I + V T + H+ FG G AS D + RV+
Sbjct: 479 --IVDCIIRLPVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 1207 KPT--YGF 1212
P YGF
Sbjct: 536 NPDDDYGF 543
Score = 48.1 bits (114), Expect = 2e-05
Identities = 55/384 (14%), Positives = 101/384 (26%), Gaps = 160/384 (41%)
Query: 582 MGSATTLTEAMDYFDRTSKTDANFEYMRIMKDHLEQVAHYAVRNFALGLSTTEV---SPS 638
MG MD + + + R +H + G S ++ +P
Sbjct: 1631 MG--------MDLYKTSKAAQDVWN--R-ADNHFKD---------TYGFSILDIVINNPV 1670
Query: 639 ----LWSGARMIQI-ERAMSQGSEDFETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQ 693
+ G + +I E + FET + T+ + K I + + + ++
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAM---IFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGL 1725
Query: 694 LSEEYFA-------SV----VLAERGPAKIQSIDSTL---------ALVSCAMSQGSEDF 733
LS F L +G + D+T AL S A
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKG---LIPADATFAGHSLGEYAALASLA---DVMSI 1779
Query: 734 ETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTL 793
E + V+ RG T+
Sbjct: 1780 E---------------SLVE-----------------------VVFYRG--------MTM 1793
Query: 794 ALAYPGVHTFVHAKDIPGK-NLAIPAAWPGQI---FEDEKAYPGVHTFVHAKDIPGKNLA 849
+A P +D G+ N + A PG++ F E + V
Sbjct: 1794 QVAVP--------RDELGRSNYGMIAINPGRVAASFSQE----ALQYVVE---------- 1831
Query: 850 IPAAWPGQIFEDEKLFAE----NEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTP 905
++ + E N Q + A + ++ ++ +K
Sbjct: 1832 -------RVGKRTGWLVEIVNYNV---ENQQY--VAAGDLRALDTVTNVLNF----IKLQ 1875
Query: 906 KLDIKQIVQDGDKARIVEMFKLEP 929
K+DI + + LE
Sbjct: 1876 KIDI---------IELQKSLSLEE 1890
Score = 45.0 bits (106), Expect = 3e-04
Identities = 40/263 (15%), Positives = 68/263 (25%), Gaps = 101/263 (38%)
Query: 1169 KGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV--RTDK---PTYGFTRSPGACEVTA 1223
+GM G+ +Y S A V R D TYGF+
Sbjct: 1629 QGM------------GM---DLYKTSK---AAQDVWNRADNHFKDTYGFS---------- 1660
Query: 1224 FIEHVMDHIATVVNRDPTDVRIAN--LRNEDVKKFYQQFRGSVKYKERRDAIETFNAVRV 1281
I +V +P ++ I + + +++ Y + + F +
Sbjct: 1661 --------ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 1282 LISQYSLRH----CF-----QNNRWRKRGISAVVTLFPLGFYDVSYAILSVFR------R 1326
+ Y+ R Q A+ + A +
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQ---------PALTL--------MEKAAFEDLKSKGLIPA 1755
Query: 1327 DATVAITTSGIEIGQGLH-----TKVAQACAYELGIPIE---KIVLK--PAQNNIFPN-- 1374
DAT A G H A A ++ + IE ++V P
Sbjct: 1756 DATFA----G-------HSLGEYA--ALASLADV-MSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 1375 AANTGGSTASDNAARCILLCCQE 1397
+ + N R QE
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQE 1824
Score = 41.6 bits (97), Expect = 0.003
Identities = 66/401 (16%), Positives = 108/401 (26%), Gaps = 142/401 (35%)
Query: 172 PFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRP--ILDAFQSFSC 229
P S LI V + Y VT + GF P + + +
Sbjct: 235 PISCP------LIGV-IQLAH---YVVT------------AKLLGFTPGELRSYLKGATG 272
Query: 230 DASDSVQRKCADIEVRGKRDFISHESLGTQLLDWA-FDTLVFSVLE--FR--LATLIIVP 284
+ V A I+ W F V + F + P
Sbjct: 273 HSQGLV---TA--------VAIAETD------SWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 285 I--LLPRLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCG 342
L P + D+ N E P L I + + + Y
Sbjct: 316 NTSLPPSILEDSLE------NN-------EGVPSPMLS--ISNLTQEQVQDY-------- 352
Query: 343 VCTVTVTSSH-PVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSF---SCDASDS 398
V T+SH P VN G + +G L + S
Sbjct: 353 ---VNKTNSHLPAGKQVEISLVN--GAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 399 VQRKCADIEVRGKRDFISHEGLPEPEYDPTYRKNLAVSL-FYKSHINPSIHNRTVMGRGD 457
Q + I ++ S+ LP V+ F+ + P+ +
Sbjct: 403 DQSR---IPFSERKLKFSNRFLP-------------VASPFHSHLLVPASD--LINKDLV 444
Query: 458 VRSLFFGSSTLGEVP---TRYKLDLMGSCKLKTKLDQSEDSNDLDTCLIELALT-PVNVN 513
++ F + + +P T D GS D S + +++ + PV
Sbjct: 445 KNNVSFNAKDIQ-IPVYDTF---D--GS-------DLRVLSGSISERIVDCIIRLPVK-- 489
Query: 514 VEGIWYIVTEVREIFEIFDGLEANQTYMLV---GGNTGYGV 551
W T+ + T++L GG +G GV
Sbjct: 490 ----WETTTQFKA------------THILDFGPGGASGLGV 514
Score = 38.5 bits (89), Expect = 0.024
Identities = 57/315 (18%), Positives = 103/315 (32%), Gaps = 97/315 (30%)
Query: 127 GSQCGYCSPGMVMAMYSRH---RLTASTMCGHNFTKTL---LLQMYCIFLPPFSLEVLFV 180
GSQ GM M +Y + + H F T +L + + P +L + F
Sbjct: 1625 GSQ----EQGMGMDLYKTSKAAQDVWNRADNH-FKDTYGFSILDI--VINNPVNLTIHF- 1676
Query: 181 ILLIFVIVSFLEGKK----YKVTKSEVEGALGGNICRCTGFRPILDAFQSFSCDASDSV- 235
+GK+ Y + E + G + F+ I + S++ + +
Sbjct: 1677 --------GGEKGKRIRENY--SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 236 ------QRKCA----------DIEVRGKRD----FISHESLG--TQLLDWA----FDTLV 269
Q A D++ +G F H SLG L A ++LV
Sbjct: 1727 SATQFTQP--ALTLMEKAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLV 1783
Query: 270 FSVLEFR-LATLIIVPILLPRLFSDTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYAR 328
V+ +R + + VP R + Y + A + PG F ++ A
Sbjct: 1784 -EVVFYRGMTMQVAVP--------------RDELGRSNYGMIA-INPGRVAASFSQE-AL 1826
Query: 329 LKGTKYMCREGGCGVCTV--------TVTSSHPVTGVDSTYSV-NACGDRCFTRNICRCT 379
+ + + G V V V + + +D+ +V N + I
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-LRALDTVTNVLNFIK----LQKI---- 1877
Query: 380 GFRPILDAFQSFSCD 394
I++ +S S +
Sbjct: 1878 ---DIIELQKSLSLE 1889
Score = 34.6 bits (79), Expect = 0.29
Identities = 60/331 (18%), Positives = 96/331 (29%), Gaps = 124/331 (37%)
Query: 983 GVDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNV 1042
G+D+Y S ++ V NR + + YG S I + V
Sbjct: 1632 GMDLYKTS-------KAAQDVW----NRADNHFKDT---YG--FS-------ILDI---V 1665
Query: 1043 INKPVRIVMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHPEFSSDVFLLLEVVGAT 1102
IN PV + + G G+ + Y ++ E D L E +
Sbjct: 1666 INNPVNLTI----HFGGEKGKR-IRENY--------SAMIFETI---VDGKLKTEKIFKE 1709
Query: 1103 ITIRD---TFGLEQTVSPEEYLSIDMNKKVITYIT----FCPLIKNSY-YLRTYKCGVDK 1154
I TF S + LS T T L+ K
Sbjct: 1710 INEHSTSYTFR-----SEKGLLSA-------TQFTQPALT--LM--EKAAFEDLK----S 1749
Query: 1155 NGVIQN-----------------LSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFR 1197
G+I L+ V +++ + + + R G
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-----VFYR---GMT--------- 1792
Query: 1198 VVANAVRTDKP---TYG-FTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDV 1253
+ AV D+ YG +PG + E + + V R V I N N +
Sbjct: 1793 -MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVE- 1849
Query: 1254 KKFYQQF--RGSVKYKERRDAIETFNAVRVL 1282
QQ+ G ++ A++T VL
Sbjct: 1850 ---NQQYVAAGDLR------ALDT--VTNVL 1869
Score = 30.8 bits (69), Expect = 5.3
Identities = 34/201 (16%), Positives = 58/201 (28%), Gaps = 71/201 (35%)
Query: 171 PPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRC----------TGFRPI 220
PP SL L + L +K K G + R F P+
Sbjct: 382 PPQSLYGLNLTL-----------RKAKAPS-------GLDQSRIPFSERKLKFSNRFLPV 423
Query: 221 LDAFQS-FSCDASDSVQRKCADIEVRGKRDFISHESLGTQLLDWAFDTLVFSVLEFRLAT 279
F S ASD + + V + + + + +DT F + R+ +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVS-----FNAKDIQIPV----YDT--FDGSDLRVLS 472
Query: 280 LIIVPILLPRLFSDT---SSTVRFTINGVVYII--GAEVPPG-----TRLVDFIRDYARL 329
I ++ + +T +F +I+ G PG L +D
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKAT---HILDFG----PGGASGLGVLTHRNKD---- 521
Query: 330 KGTKYMCREGGCGVCTVTVTS 350
G GV + +
Sbjct: 522 ----------GTGVRVIVAGT 532
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B*
3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Length = 305
Score = 50.4 bits (121), Expect = 2e-06
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 509 PVNVNVEG---IWYIVTEVREIFEIFDGLEANQTYMLVGGNTGYGVYRP--RVPVDVYIQ 563
P + EG W + ++E+ ++ + LV GNT G+ + I
Sbjct: 1 PKQLRFEGERVTWIQASTLKELLDL---KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIIC 57
Query: 564 IRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFE--YMRIMKDHLEQVAHY 621
I EL + + G+A L+ + R + + L A
Sbjct: 58 PAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGK 117
Query: 622 AVRNFA 627
V++ A
Sbjct: 118 QVKSVA 123
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 37.9 bits (89), Expect = 0.019
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 17 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
+T TVR + +G + E+P +++ +RD A ++ C G CG C + S
Sbjct: 235 NTPFTVRLSRSGTSF----EIPANRSILEVLRD-ANVR-VPSSCESGTCGSCKTALCS 286
Score = 37.9 bits (89), Expect = 0.019
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 293 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
+T TVR + +G + E+P +++ +RD A ++ C G CG C + S
Sbjct: 235 NTPFTVRLSRSGTSF----EIPANRSILEVLRD-ANVR-VPSSCESGTCGSCKTALCS 286
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 296
Score = 37.2 bits (87), Expect = 0.028
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 550 GVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMR 609
+P V +D I+ +KEL I + +G+ +T T+ ++ ++R
Sbjct: 43 RWEKPDVVID----IKKLKELEYIRVEENTIHIGALSTFTQIENH-------PFIRSHVR 91
Query: 610 IMKDHLEQVAHYAVRN 625
+ QV +RN
Sbjct: 92 ALYKAASQVGSPQIRN 107
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase;
HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava}
SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Length = 287
Score = 36.1 bits (84), Expect = 0.065
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 550 GVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMR 609
+P +D I I ELR I V++G+ T + + + +
Sbjct: 44 RFAQPEHLID----INRIPELRGIREEGSTVVIGAMTVENDLIS-------SPIVQARLP 92
Query: 610 IMKDHLEQVAHYAVRN 625
++ + + +A VRN
Sbjct: 93 LLAEAAKLIADPQVRN 108
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1
d.145.1.3
Length = 288
Score = 36.0 bits (84), Expect = 0.072
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 553 RPRVPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMK 612
P VD +R++ EL +I G + +G+ T + + I+
Sbjct: 46 YPSCLVD----LRNVSELFEISQSAGILSVGAMVTHFRNKTD-------PTVAKCVPILP 94
Query: 613 DHLEQVAHYAVRN 625
L VAH AVRN
Sbjct: 95 KVLAHVAHQAVRN 107
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3
PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Length = 288
Score = 35.7 bits (83), Expect = 0.10
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 553 RPRVPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANFEYMRIMK 612
P VD +RDI +L I V++G+ TT + +D + I++
Sbjct: 47 TPEHLVD----LRDIGDLVGIREEGTDVVIGAMTTQHALIG-------SDFLAAKLPIIR 95
Query: 613 DHLEQVAHYAVRN 625
+ +A +R
Sbjct: 96 ETSLLIADPQIRY 108
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 34.8 bits (79), Expect = 0.26
Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 546 NTGYGVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLMGSATTLTEAMDYFDRTSKTDANF 605
T G R D Y T G + +
Sbjct: 558 ETPGGRMWHRYTYDGYG--EKADGSPWDGTGIGRLWP--LLSGERGEYALANGQDALPYL 613
Query: 606 EYMRIMKDHL----EQV---AHYAVRNFALGLSTTEVSPSLWSGARMIQIERAMSQG 655
E M + EQV LG ST SP W+ A+ +++ + G
Sbjct: 614 ETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAG 670
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.57
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 19/42 (45%)
Query: 910 KQIVQDGDKARIVEMFKLEPTATKSKFSPDS------NARWE 945
KQ ++ KL+ + K ++ DS A E
Sbjct: 19 KQALK-----------KLQ-ASLK-LYADDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 1.3
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 785 KIQSIDSTLALAYPGVHTFVHAKD-IPGKNLAIPAA 819
++ + ++L L Y A D P LAI A
Sbjct: 21 ALKKLQASLKL-Y--------ADDSAPA--LAIKAT 45
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus
haemolyticus} PDB: 4e8i_A* 4fo1_A*
Length = 161
Score = 31.6 bits (71), Expect = 0.91
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 526 EIFEIFDGLEANQTYMLVGGNTGYGV-------YRPRVPVDVYIQIRDIKELRQIFTRNG 578
E+F I D E + + G G+GV R +D+ + +++ Q G
Sbjct: 10 ELFYILDLFEHMKVTYWLDG--GWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLEDIG 67
Query: 579 Y 579
Y
Sbjct: 68 Y 68
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.9 bits (68), Expect = 1.0
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 33/95 (34%)
Query: 523 EVREIFEIFDGLEANQTYMLVGGNTGYGVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLM 582
E++ FE+F E G+ I +EL+ + G L+
Sbjct: 6 EIKGAFEVFAAKE---------GDPN------------QI---SKEELKLVMQTLGPSLL 41
Query: 583 GSATTLTEAMDYFDRTSKTDA----NF-EYMRIMK 612
+TL E ++ D+ + +F E++ +MK
Sbjct: 42 KGMSTLDEMIEEVDK----NGDGEVSFEEFLVMMK 72
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU;
2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 32.3 bits (74), Expect = 1.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 984 VDIYAASQWVTLVQESVAGVLGLPNNRVNVKTRR 1017
+D + A Q + + + VLG+ N++ +KTR
Sbjct: 451 IDAHKARQRLFDIIAATISVLGIAPNKLVLKTRE 484
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite,
electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C*
1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A
1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A
1off_A 1dox_A 1doy_A ...
Length = 98
Score = 29.6 bits (67), Expect = 2.1
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
T+ G + I EVP +I D A +G + CR G C C + S
Sbjct: 6 TLINEAEGTKHEI--EVPDDE----YILDAAEEQGYDLPFSCRAGACSTCAGKLVS 55
Score = 29.6 bits (67), Expect = 2.1
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
T+ G + I EVP +I D A +G + CR G C C + S
Sbjct: 6 TLINEAEGTKHEI--EVPDDE----YILDAAEEQGYDLPFSCRAGACSTCAGKLVS 55
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 30.9 bits (70), Expect = 2.9
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 937 SPDSNARWEILEAGKKLFKIKGAAEFGPQYHYTMEGQTALCVPSEDGVDIYAA 989
+ W ++ +KL+ KG +G ++ + GQ AL + G ++
Sbjct: 18 EKLDHGWW-VVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLV 69
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron
transfer, metalloprotein; 1.40A {'chlorella' fusca}
SCOP: d.15.4.1
Length = 94
Score = 29.1 bits (66), Expect = 2.9
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
V I E P T +I D A G Y CR G C C V S
Sbjct: 2 KVTLKTPSGEETI--ECPEDT----YILDAAEEAGLDLPYSCRAGACSSCAGKVES 51
Score = 29.1 bits (66), Expect = 2.9
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
V I E P T +I D A G Y CR G C C V S
Sbjct: 2 KVTLKTPSGEETI--ECPEDT----YILDAAEEAGLDLPYSCRAGACSSCAGKVES 51
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein,
iron-sulfur, electron transport; 1.90A {Haloarcula
marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Length = 128
Score = 29.3 bits (66), Expect = 3.6
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 36 EVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
EV G +++ A +G + CR G C C V
Sbjct: 41 EVNEGEYILEA----AEAQGYDWPFSCRAGACANCAAIVLE 77
Score = 29.3 bits (66), Expect = 3.6
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 312 EVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
EV G +++ A +G + CR G C C V
Sbjct: 41 EVNEGEYILEA----AEAQGYDWPFSCRAGACANCAAIVLE 77
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic,
gene regulation; 1.80A {Neisseria meningitidis}
Length = 166
Score = 30.0 bits (67), Expect = 3.9
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 548 GYGVYRPRVPVDVYIQIRDIKEL-------RQIFTRNGYVLMGSATTLTEAMDYFDRTSK 600
GYG Y R P+ ++ IK + + ++ ++G + A + + +
Sbjct: 71 GYGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQHGKTIETLADGGADIPSLRKQFPE 130
Query: 601 -TDANFEYMRIMKDHLEQVAHYAVRNFAL 628
+ + Y + L +A + N+
Sbjct: 131 FEEWDGAYYEAAEQDLPLLAEHIQSNWET 159
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium
falciparum} SCOP: d.15.4.1
Length = 98
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
+ N I E +I D + + + Y CR G C C +
Sbjct: 2 FYNITLRTNDGEKKI--ECNEDE----YILDASERQNVELPYSCRGGSCSTCAAKLVE 53
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
+ N I E +I D + + + Y CR G C C +
Sbjct: 2 FYNITLRTNDGEKKI--ECNEDE----YILDASERQNVELPYSCRGGSCSTCAAKLVE 53
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin,
oxidoreductase; NMR {Methylococcus capsulatus str}
SCOP: d.15.4.2
Length = 98
Score = 28.4 bits (64), Expect = 5.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 58 YMCREGGCGVCTVTVTS 74
CREGGC C +
Sbjct: 40 SSCREGGCATCKALCSE 56
Score = 28.4 bits (64), Expect = 5.2
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 334 YMCREGGCGVCTVTVTS 350
CREGGC C +
Sbjct: 40 SSCREGGCATCKALCSE 56
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 30.0 bits (68), Expect = 5.3
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 58 YMCREGGCGVCTVTVTS 74
CREG CG C S
Sbjct: 39 MDCREGECGTCRAFCES 55
Score = 30.0 bits (68), Expect = 5.3
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 334 YMCREGGCGVCTVTVTS 350
CREG CG C S
Sbjct: 39 MDCREGECGTCRAFCES 55
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane, glycoprotein,
ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus}
PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 30.1 bits (67), Expect = 6.5
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 1453 EVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIH 1505
E + LTG R+ + G + +D+ ++ + IG W ++
Sbjct: 334 EAHWEGLTG-----RITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN 381
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron
transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1
PDB: 1pfd_A
Length = 97
Score = 28.0 bits (63), Expect = 6.9
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
+ V + P +I D A +G Y CR G C C + +
Sbjct: 2 AYKVTLVTPTGNVEF--QCPDDV----YILDAAEEEGIDLPYSCRAGSCSSCAGKLKT 53
Score = 28.0 bits (63), Expect = 6.9
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
+ V + P +I D A +G Y CR G C C + +
Sbjct: 2 AYKVTLVTPTGNVEF--QCPDDV----YILDAAEEEGIDLPYSCRAGSCSSCAGKLKT 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.8 bits (68), Expect = 7.5
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Query: 773 FASVVLAD---RGPAKIQS 788
F++ +LAD R PAK+QS
Sbjct: 109 FSNFILADEVNRSPAKVQS 127
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle,
transcriptional antitermination, transcription; 1.99A
{Bacillus subtilis}
Length = 180
Score = 29.0 bits (65), Expect = 7.6
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 1192 DPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNE 1251
D + + + + + + DHIA + R + N
Sbjct: 81 DEKLVDISNDVIYHISNRTNHSLNEH------IHIALTDHIAFAIKRQQQGFDMKNPFLM 134
Query: 1252 DVKKFYQQ 1259
+ + Y +
Sbjct: 135 ETQSLYPE 142
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A
{Equisetum arvense} SCOP: d.15.4.1
Length = 95
Score = 27.6 bits (62), Expect = 9.4
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 74
+ + + +VP GT I D A G + CR G C C V S
Sbjct: 1 AYKTVLKTPSGEFTL--DVPEGT----TILDAAEEAGYDLPFSCRAGACSSCLGKVVS 52
Score = 27.6 bits (62), Expect = 9.4
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTK--YMCREGGCGVCTVTVTS 350
+ + + +VP GT I D A G + CR G C C V S
Sbjct: 1 AYKTVLKTPSGEFTL--DVPEGT----TILDAAEEAGYDLPFSCRAGACSSCLGKVVS 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,393,850
Number of extensions: 1475722
Number of successful extensions: 3494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3378
Number of HSP's successfully gapped: 148
Length of query: 1520
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1414
Effective length of database: 3,742,167
Effective search space: 5291424138
Effective search space used: 5291424138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.3 bits)