RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7003
(1520 letters)
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 164 bits (415), Expect = 2e-42
Identities = 85/588 (14%), Positives = 177/588 (30%), Gaps = 86/588 (14%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
K + + +E + + + ++ Q +++ V+ + GLP ++++V
Sbjct: 57 SKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHV 116
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
IGGG+G K+ V A V S V+ PV+ V + + T E+
Sbjct: 117 IAPDIGGGFGNKVGAY-SGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELA 175
Query: 1074 TIGGNLSIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLSIDMNKKVITYI 1133
+ + D + P ++ + MN +Y
Sbjct: 176 ATKDGKILAMRC-----------------HVLADHGAFDACADPSKWPAGFMNICTGSYD 218
Query: 1134 TFCPLIKNSYYLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDP 1193
+L +K F V + + E + L D
Sbjct: 219 MPV------AHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRL----EMDS 268
Query: 1194 STFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDV 1253
+ R+ N ++ ++ ++ + + +
Sbjct: 269 ADLRIK-NFIQPEQFP-----------------YMAPLGWEYDSGNYPLAMKKAMDTVGY 310
Query: 1254 KKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGF 1313
+ + + + +R + E ++ +N + +
Sbjct: 311 HQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEI----- 365
Query: 1314 YDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFP 1373
+V GQG T AQ A ELGIP + I+++ + P
Sbjct: 366 ---------RIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAP 416
Query: 1374 NAANTGGSTASDNAARCILLCCQELKTRLMPYM-------------DKGKSWEKTISDAF 1420
T GS ++ A + +++K + D + K + + F
Sbjct: 417 YGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKF 476
Query: 1421 ERGVDL----------QVTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDI 1470
+ +L + + + D M A +++D+ TG + R
Sbjct: 477 KTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYA 536
Query: 1471 LEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
L+D G INP I GQ+ G + + +D++ G +L
Sbjct: 537 LDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQ-GNVLGASFM 583
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 146 bits (369), Expect = 1e-36
Identities = 79/571 (13%), Positives = 145/571 (25%), Gaps = 55/571 (9%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
+ + + +E + P + + Y SQ +V+ V+ + G+P ++V +
Sbjct: 54 VSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRI 113
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+ IGGG+G K+ V A V S V+ +PV+ V + + E+
Sbjct: 114 VSPDIGGGFGNKVGIY-PGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELA 172
Query: 1074 TIGGNLSIKHEHPEFSSDVFLLLEVVGATITIRDTFGLEQTVSPEEYLSIDMNKKVITYI 1133
+ + + + + +I
Sbjct: 173 ATPDGKILGLRV-----------------------NVVADHGAFDACADPTKFPAGLFHI 209
Query: 1134 TFCPLIKNSYYLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDP 1193
+ +K F V + + L E + L D
Sbjct: 210 CSGSYDIPRAHCSVKGVYTNKAPGGVAYRCSFRVTEAVYLIERMVDVLAQKLNM----DK 265
Query: 1194 STFR---VVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIAN--- 1247
+ R + +GF G + N
Sbjct: 266 AEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPT 325
Query: 1248 LRNEDVKKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVT 1307
L + F + + F++ + I + +G
Sbjct: 326 LMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYA 385
Query: 1308 LFPLGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPA 1367
+ ++ V D + A G G A A K A
Sbjct: 386 QIIATELGIPSEVIQVEEGDTSTAPYGLGTY-GSRSTPVAGAAIALAARKIHAKARKIAA 444
Query: 1368 QNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKSWEKTISDAFERGVDLQ 1427
D + ++ D E G++
Sbjct: 445 HMLEVNEN---------DLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLE-- 493
Query: 1428 VTKSVSSQQTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQI 1487
+ D V++D TG+ ++ R L+D G INP I GQI
Sbjct: 494 ------AVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQI 547
Query: 1488 QGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
G G + + D + G LL N
Sbjct: 548 HGGLTEGYAVAMGQQMPFDAQ-GNLLGNTLM 577
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 134 bits (338), Expect = 7e-33
Identities = 97/424 (22%), Positives = 165/424 (38%), Gaps = 50/424 (11%)
Query: 1144 YLRTYKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAV 1203
+ Y+ G D +G + V G + + + + R L Y R+ ++ +
Sbjct: 149 FRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRL 208
Query: 1204 RTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGS 1263
RT+ + R G + +E ++H+A + RDP ++R N + +
Sbjct: 209 RTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSP 268
Query: 1264 VK--------------YKERRDAIETFNAVRVLISQYSLRHCFQ----NNRWRKRGISAV 1305
+ E ++ + + R NR RGI+
Sbjct: 269 PEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALS 328
Query: 1306 VTLFPLGFYDVSYAILSV---FRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKI 1362
F + F D +VA+ G E+GQGLH K+ Q A LGI ++
Sbjct: 329 PVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQV 388
Query: 1363 VLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYM---------------- 1406
+ + PN + T S+ +D + C+ L+ RL ++
Sbjct: 389 RITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAG 448
Query: 1407 -----DKGKSWEKTISDAFERGVDLQVTKSVSSQQTPDLLPM-------YTIPTAAATEV 1454
K + + ++ A+ + L T ++ + Y AA TEV
Sbjct: 449 QVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEV 508
Query: 1455 EVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
+D LTG+++ILR DIL D G S+NPA+DIGQI+GA++ G G T E + D G L+T
Sbjct: 509 VIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWD-HCGRLMT 567
Query: 1515 NRTW 1518
+
Sbjct: 568 HAPS 571
Score = 116 bits (291), Expect = 5e-27
Identities = 42/117 (35%), Positives = 64/117 (54%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCVPSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNVKT 1015
+G E G Q H+ +EGQ AL +P+E GV I+ +SQ + +Q VA LGL + V V+
Sbjct: 39 AEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEM 98
Query: 1016 RRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEI 1072
RR+GGG+G K S+ + A+ AV + +P ++ + M G R+ Y I
Sbjct: 99 RRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRI 155
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 120 bits (301), Expect = 3e-28
Identities = 110/431 (25%), Positives = 170/431 (39%), Gaps = 24/431 (5%)
Query: 1109 FGLEQTVSPEEYL-----SIDMNKKVITYITFCPLIKNSYYLR----TYKCGVDKNGVIQ 1159
FG ++T S + + V + + + YK G K G I
Sbjct: 104 FGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIV 163
Query: 1160 NLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDKPTYGFTRSPGAC 1219
L + G + + + + R + Y R +T+ + R G
Sbjct: 164 ALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGP 223
Query: 1220 EVTAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFNAV 1279
+ E+ M +A +VR N+ E + Q D +
Sbjct: 224 QALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQY 283
Query: 1280 RVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFYDVSYAILSVFRR---DATVAITTSG 1336
S+ + N W+KRG+ + T F + F D +V ++ G
Sbjct: 284 YARKSEV--DKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGG 341
Query: 1337 IEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQ 1396
E+GQGLHTK+ Q + L IPI KI + N PN++ T S ++D + + CQ
Sbjct: 342 TEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQ 401
Query: 1397 ELKTRLMPYMDK--GKSWEKTISDAFERGVDLQVTKSVSSQQTPDLL-------PMYTIP 1447
+ RL P+ K SWE + A++ V L T + Y
Sbjct: 402 TILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTY 461
Query: 1448 TAAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDK 1507
A +EVE+D LTG H+ LR DI+ D G S+NPAIDIGQ++GAF+ G+GL+T E +
Sbjct: 462 GVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSP 521
Query: 1508 RTGALLTNRTW 1518
G+L T
Sbjct: 522 E-GSLHTRGPS 531
Score = 102 bits (254), Expect = 1e-22
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCVP--SEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
+ G G Q H+ +E + +P E ++++ ++Q Q VA +LG+P NR+ V
Sbjct: 36 VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILV 95
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+ +R+GGG+G K +RS +V A+ + PVR ++ M GGR+P A Y++G
Sbjct: 96 RVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVG 155
Query: 1074 TIGGNLSIKHEH 1085
+ + E
Sbjct: 156 FMKTGTIVALEV 167
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 90
Score = 101 bits (253), Expect = 3e-26
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPV 78
+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++ +
Sbjct: 1 ADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 59
Query: 79 TGVDSTYSVNACLVLVHMCGGWAITTVEGLG 109
+S NACL + A+TTVEG+G
Sbjct: 60 QDKIIHFSANACLAPICTLHHVAVTTVEGIG 90
Score = 74.2 bits (182), Expect = 1e-16
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPV 354
+ + F +NG + P T L+ ++R L+GTK C EGGCG CTV ++ +
Sbjct: 1 ADELVFFVNGKKVVE-KNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRL 59
Query: 355 TGVDSTYSVNAC 366
+S NAC
Sbjct: 60 QDKIIHFSANAC 71
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase {Desulfovibrio
desulfuricans [TaxId: 876]}
Length = 596
Score = 112 bits (279), Expect = 9e-26
Identities = 79/419 (18%), Positives = 139/419 (33%), Gaps = 19/419 (4%)
Query: 1109 FGLEQTVSPEEYLSIDMNKKVITYITFCPLIKNSY-------YLRTYKCGVDKNGVIQNL 1161
FG + + + E + + + + + T + D+ G I +
Sbjct: 113 FGYKFSPTMEALVGVAVMATGRPCHLRYNYEQQQNYTGKRSPFWTTMRYAADRQGKILAM 172
Query: 1162 STVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDKPTYGFTRSPGACEV 1221
T ++VD G L +R + Y + R V T+ R GA E
Sbjct: 173 ETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATNHCWGAAFRGYGAPES 232
Query: 1222 TAFIEHVMDHIATVVNRDPTDVRIANLRNEDVKKFYQQFRGSVKYKERRDAIETFNAVRV 1281
E +MD +A + DP ++R N E Q + E D + +
Sbjct: 233 EFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSLPEMFDKMRPYYEES- 291
Query: 1282 LISQYSLRHCFQNNRWRKRGISAVVTLFPLGFYDVSYAILSV-FRRDATVAITTSGIEIG 1340
R ++ KRG+ + ++ G + V D +V + S + G
Sbjct: 292 -----KKRVKERSTAEIKRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHG 346
Query: 1341 QGLHTKVAQAC---AYELGIPIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQE 1397
QG LGI E I L + PN+ GGS + I + C+
Sbjct: 347 QGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEM 406
Query: 1398 LKTRLMPYMDKGKSWEKTISDAFERGVDLQVT--KSVSSQQTPDLLPMYTIPTAAATEVE 1455
L + + + ++ D + T + + TEV
Sbjct: 407 LIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVA 466
Query: 1456 VDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLT 1514
V++ TG+ + ++ + D G+ N + GQI G G+GL E K+ +
Sbjct: 467 VEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGG 525
Score = 80.9 bits (198), Expect = 5e-16
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 4/135 (2%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAASQWVTLVQESVAGVLGLPNNRVN-V 1013
+G+ Q H +E +E G V I++ S + L +A LGL + +
Sbjct: 45 AEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVL 104
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
GG +G K S + V +P + + E G R P + T
Sbjct: 105 VQNTTGGTFGYKFSP--TMEALVGVAVMATGRPCHLRYNYEQQQNYTGKRSPFWTTMRYA 162
Query: 1074 TIGGNLSIKHEHPEF 1088
+ E
Sbjct: 163 ADRQGKILAMETDWS 177
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 106 bits (264), Expect = 7e-24
Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCVP--SEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
++G G ME + A+ + + ++ A+Q + V+ VA +P + + V
Sbjct: 22 VRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEV 81
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+ +GGG+G K ++ + S + +PVR + + +
Sbjct: 82 RVPDVGGGFGQKAHLH-PEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLA 140
Query: 1074 TIGGNLSIKHEHP 1086
G + E+
Sbjct: 141 FDGDGRFLALENR 153
Score = 95.8 bits (237), Expect = 1e-20
Identities = 68/366 (18%), Positives = 115/366 (31%), Gaps = 42/366 (11%)
Query: 1191 YDPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRN 1250
Y + AV T+K G R G E ++D A + P ++R N+
Sbjct: 183 YKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVM 242
Query: 1251 EDVKKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
+ F + + ++T N + +++ + R R R + + V++F
Sbjct: 243 PEDFPFTNRLG---QTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFN 299
Query: 1311 LGFYDVSYAILSV-------------FRRDATVAITTSGIEIGQGLHTKVAQACAYELGI 1357
+ + + V +TTS GQG T +AQ A LG+
Sbjct: 300 EVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGV 359
Query: 1358 PIEKIVLKPAQNNIFPNAANTGGSTASDNAARCILLCCQELKTRLMPYM----------- 1406
P +V++ A A +
Sbjct: 360 PASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIV 419
Query: 1407 ------------DKGKSWEKTISDAFERGVDLQ--VTKSVSSQQTPDLLPMYTIPTAAAT 1452
KG + + + A+ ++ + T D + A
Sbjct: 420 IEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAA 479
Query: 1453 EVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGAL 1512
VE+D T ++ +ED G INP I GQI+G IG E I+D G L
Sbjct: 480 IVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDD-FGQL 538
Query: 1513 LTNRTW 1518
+T
Sbjct: 539 VTTTLM 544
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio
gigas [TaxId: 879]}
Length = 597
Score = 99.0 bits (245), Expect = 1e-21
Identities = 55/330 (16%), Positives = 100/330 (30%), Gaps = 6/330 (1%)
Query: 1191 YDPSTFRVVANAVRTDKPTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANLRN 1250
Y+ R + V T+ R GA + E +MD +A + DP ++R N
Sbjct: 200 YNIPNIRGLGRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYR 259
Query: 1251 EDVKKFYQQFRGSVKYKERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFP 1310
Q + D + + + + + + I +
Sbjct: 260 PGDTNPTGQEPEVFSLPDMID--QLRPKYQAALEKAQKESTATHKKGVGISIGVYGSGLD 317
Query: 1311 LGFYDVSYAILSVFRRDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNN 1370
++A L+ + A +G+ EKI
Sbjct: 318 GPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTA 377
Query: 1371 IFPNAANTGGSTASDNAARCILLCCQELKTRLMPYMDKGKSWEKTIS--DAFERGVDLQV 1428
PN+ +GGS I + C+ L ++++ + + +
Sbjct: 378 TTPNSGPSGGSRQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTA 437
Query: 1429 TKSVSSQQTPDLLPMYTIPT--AAATEVEVDLLTGQHQILRVDILEDTGQSINPAIDIGQ 1486
+ + L + + EV VD+ TGQ + + ++ D G N GQ
Sbjct: 438 SGATHCDAVTGLGKPFVVYMYGVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQ 497
Query: 1487 IQGAFIMGIGLWTFEHQIHDKRTGALLTNR 1516
I G GIGL E K+ L+
Sbjct: 498 IYGGLAQGIGLALSEDFEDIKKHATLVGAG 527
Score = 96.3 bits (238), Expect = 8e-21
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 10/157 (6%)
Query: 938 PDSNARWEILEAG--KKLFK-----IKGAAEFGPQYHYTMEGQTALCVPSEDG-VDIYAA 989
P+ I++ +F ++G G Q H +E A +DG I++
Sbjct: 19 PNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMGDDGKCYIHSK 78
Query: 990 SQWVTLVQESVAGVLGLPNNRVNVKTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRI 1049
S V L +A +GL +++ + +GG +G K S + AV + +PV +
Sbjct: 79 SIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSP--TSEALVAVAAMATGRPVHL 136
Query: 1050 VMSIESMMGALGGRYPVYATYEIGTIGGNLSIKHEHP 1086
+ + G R P + + E
Sbjct: 137 RYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESD 173
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 97.8 bits (242), Expect = 3e-21
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 3/133 (2%)
Query: 956 IKGAAEFGPQYHYTMEGQTALCV--PSEDGVDIYAASQWVTLVQESVAGVLGLPNNRVNV 1013
+ F H ME L P D + + +Q V VA L + + R+ V
Sbjct: 44 REKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRV 103
Query: 1014 KTRRIGGGYGAKLSRSCYPAVIAAVCSNVINKPVRIVMSIESMMGALGGRYPVYATYEIG 1073
+GGG+GA+ + + +IA + + VR++ + E A GR +IG
Sbjct: 104 IKPFLGGGFGART-EALHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMKIG 162
Query: 1074 TIGGNLSIKHEHP 1086
Sbjct: 163 LKKDGKIAALALE 175
Score = 90.9 bits (224), Expect = 5e-19
Identities = 74/407 (18%), Positives = 135/407 (33%), Gaps = 42/407 (10%)
Query: 1148 YKCGVDKNGVIQNLSTVFNVDKGMTLNENGFLHVRFGLGQASIYDPSTFRVVANAVRTDK 1207
K G+ K+G I L+ G + G +Y + A V T+
Sbjct: 159 MKIGLKKDGKIAALALEATQAGGAYAGYGIITILYTGALMHGLYHIPAIKHDAWRVYTNT 218
Query: 1208 PTYGFTRSPGACEVTAFIEHVMDHIATVVNRDPTDVRIANL-RNEDVKKFYQQFRGSVKY 1266
P G R G + A E ++ + + D +R N+ Y Q S
Sbjct: 219 PPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQIPYVTMYAQRVMSYGV 278
Query: 1267 KERRDAIETFNAVRVLISQYSLRHCFQNNRWRKRGISAVVTLFPLGFYDVSYAILSV-FR 1325
E + ++ + + + T P + +A +++
Sbjct: 279 PECLEKVKAASGWE----ERKGKLPKGRGLGIALSHFVSGTSTPKHWTGEPHATVNLKLD 334
Query: 1326 RDATVAITTSGIEIGQGLHTKVAQACAYELGIPIEKIVLKPAQNNIFPNAANTGGSTASD 1385
D + + T +IGQG +T +Q A LG+ + +I + A + + P + S +
Sbjct: 335 FDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF 394
Query: 1386 NAARCILLCCQELKTRLMPYM------------------------DKGKSWEKTISDAFE 1421
+ +ELK L+ D G S+++ + A
Sbjct: 395 MVGNASISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMV 454
Query: 1422 RGVDLQVTKSVSSQ----------QTPDLLPMYTIPTAAATEVEVDLLTGQHQILRVDIL 1471
+ V + + + M A E VD +TG+ +V +
Sbjct: 455 DSGTITVKGTYTCPTEFQGDKKIRGSAIGATMGFCYAAQVVEASVDEITGKVTAHKVWVA 514
Query: 1472 EDTGQSINPAIDIGQIQGAFIMGIGLWTFEHQIHDKRTGALLTNRTW 1518
D G+++NP GQ QG MG+G E ++D G ++
Sbjct: 515 VDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYD--NGRMVHGNIL 559
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 86.4 bits (214), Expect = 5e-21
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 19 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPV 78
+ +R T+NG VP L+D++R+ L GTK C G CG CTV
Sbjct: 2 KNILRLTLNGRARED--LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVL------- 52
Query: 79 TGVDSTYSVNACLVLVHMCGGWAITTVEGLGS 110
AC L H G + TVE L +
Sbjct: 53 ---VDDRPRLACSTLAHQVAGKKVETVESLAT 81
Score = 58.7 bits (142), Expect = 3e-11
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 295 SSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPV 354
+ +R T+NG VP L+D++R+ L GTK C G CG CTV
Sbjct: 2 KNILRLTLNGRARED--LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVL------- 52
Query: 355 TGVDSTYSVNAC 366
AC
Sbjct: 53 ---VDDRPRLAC 61
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 79
Score = 81.8 bits (202), Expect = 2e-19
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 20 STVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 79
+ + TING V P T L+ FIR+ L G C CG CTV
Sbjct: 2 AHIELTINGHPVEA--LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVD-------- 51
Query: 80 GVDSTYSVNACLVLVHMCGGWAITTVEGL 108
SV +C + G +ITT+EG+
Sbjct: 52 --LDGMSVKSCTMFAVQANGASITTIEGM 78
Score = 56.4 bits (136), Expect = 2e-10
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 296 STVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 355
+ + TING V P T L+ FIR+ L G C CG CTV
Sbjct: 2 AHIELTINGHPVEA--LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVD-------- 51
Query: 356 GVDSTYSVNAC 366
SV +C
Sbjct: 52 --LDGMSVKSC 60
>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A,
N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 84
Score = 81.5 bits (201), Expect = 3e-19
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ F +NG + E P L++ +R L GTK C EG CG CTV +
Sbjct: 3 IAFLLNGETRRVRIE-DPTQSLLELLRA-EGLTGTKEGCNEGDCGACTVMIR------DA 54
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGLGS 110
+ +VNACL+++ G A+ T+EG+ +
Sbjct: 55 AGSRAVNACLMMLPQIAGKALRTIEGIAA 83
Score = 53.7 bits (129), Expect = 2e-09
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 357
+ F +NG + E P L++ +R L GTK C EG CG CTV +
Sbjct: 3 IAFLLNGETRRVRIE-DPTQSLLELLRA-EGLTGTKEGCNEGDCGACTVM------IRDA 54
Query: 358 DSTYSVNAC 366
+ +VNAC
Sbjct: 55 AGSRAVNAC 63
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 80
Score = 80.3 bits (198), Expect = 6e-19
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 20 STVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 79
T +NG+ + V P LVD +R +L K C +G CG CTV +
Sbjct: 2 ETKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK---- 55
Query: 80 GVDSTYSVNACLVLV-HMCGGWAITTVEGLG 109
V AC++ + + ++TT+EG+G
Sbjct: 56 ------VVRACIIKMSRVAENASVTTLEGIG 80
Score = 57.1 bits (138), Expect = 1e-10
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 296 STVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 355
T +NG+ + V P LVD +R +L K C +G CG CTV +
Sbjct: 2 ETKTLIVNGMARRL--LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGK---- 55
Query: 356 GVDSTYSVNAC 366
V AC
Sbjct: 56 ------VVRAC 60
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 79
Score = 80.2 bits (198), Expect = 8e-19
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 80
+ +NG V P T L+ F+R+ L G C CG CTV
Sbjct: 3 IITVNVNGKAQEK--AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVD--------- 51
Query: 81 VDSTYSVNACLVLVHMCGGWAITTVEGL 108
SV +C L C G + TVEGL
Sbjct: 52 -IDGRSVKSCTHLAVQCDGSEVLTVEGL 78
Score = 55.2 bits (133), Expect = 4e-10
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 356
+ +NG V P T L+ F+R+ L G C CG CTV
Sbjct: 3 IITVNVNGKAQEK--AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVD--------- 51
Query: 357 VDSTYSVNAC 366
SV +C
Sbjct: 52 -IDGRSVKSC 60
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 79.9 bits (197), Expect = 1e-18
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
+ TING + V P L D +R+ L GTK C +G CG CT+ + +
Sbjct: 6 ISATINGKPRVF--YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA------ 57
Query: 82 DSTYSVNACLVLVHMCGGWAITTVEGL 108
+ +CL L G +I TVEGL
Sbjct: 58 ----PMRSCLTLAVQAEGCSIETVEGL 80
Score = 54.4 bits (131), Expect = 8e-10
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 357
+ TING + V P L D +R+ L GTK C +G CG CT+ + +
Sbjct: 6 ISATINGKPRVF--YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGA------ 57
Query: 358 DSTYSVNAC 366
+ +C
Sbjct: 58 ----PMRSC 62
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio gigas [TaxId: 879]}
Length = 80
Score = 75.2 bits (185), Expect = 4e-17
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 81
T+NG+ + V L D +R L G K C +G CG C+V +
Sbjct: 4 KVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK------ 55
Query: 82 DSTYSVNACLVLVH-MCGGWAITTVEGLG 109
V AC+ + + G ITT+EG+G
Sbjct: 56 ----VVRACVTKMKRVADGAQITTIEGVG 80
Score = 52.9 bits (127), Expect = 3e-09
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGV 357
T+NG+ + V L D +R L G K C +G CG C+V +
Sbjct: 4 KVITVNGIEQNL--FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGK------ 55
Query: 358 DSTYSVNAC 366
V AC
Sbjct: 56 ----VVRAC 60
>d1jrob1 d.41.1.1 (B:2-123) Xanthine dehydrogenase chain B,
N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 122
Score = 71.7 bits (175), Expect = 3e-15
Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 40/156 (25%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
KPLP A G+A Y++DLP + + L+ A I +D PGV
Sbjct: 4 KPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAV 63
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
A D+P N A PA P + +
Sbjct: 64 FTAADLPHDNDASPAPSPEPVLATGE---------------------------------- 89
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVY 899
V F GQ I + A + ++A AA+ ++ Y
Sbjct: 90 ------VHFVGQPIFLVAATSHRAARIAARKARITY 119
Score = 34.3 bits (78), Expect = 0.024
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTLAL 721
KPLP A G+A Y++DLP + + L+ A I +D
Sbjct: 4 KPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVR 55
>d1v97a1 a.56.1.1 (A:93-165) Xanthine oxidase, domain 2 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 73
Score = 65.3 bits (159), Expect = 1e-13
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 47/119 (39%)
Query: 110 SKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIF 169
S K H VQ R+A +GSQCG+C+PG+VM+MY+ R
Sbjct: 1 STKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLR----------------------- 37
Query: 170 LPPFSLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
+ + T E+E A GN+CRCTG+RPIL F++F+
Sbjct: 38 ------------------------NQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 72
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 341 CGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT + S + + F N+CRCTG+RPIL F++F+
Sbjct: 21 CGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 72
>d1v97a3 d.41.1.1 (A:537-694) Xanthine oxidase, domain 5 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 66.3 bits (161), Expect = 4e-13
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 45/179 (25%)
Query: 727 SQGSEDFETK----QNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRG 782
+ F+ + +PLP + A Q +GEA Y +D+P+ E F +V + R
Sbjct: 18 PANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRA 77
Query: 783 PAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKD 842
AKI+SID + A PG F+ A DIPG N
Sbjct: 78 HAKIKSIDVSEAQKVPGFVCFLSADDIPGSN----------------------------- 108
Query: 843 IPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD 901
+F DE +FA++ V G IIGA++AD + A AA +VKV Y D
Sbjct: 109 ------------ETGLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYED 155
Score = 48.6 bits (115), Expect = 6e-07
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 634 EVSPSLWSGARMIQIERAMSQGSEDFETK----QNLWPLTKPLPKIDAITQCAGEAEYVN 689
++ P+ S + Q + + F+ + +PLP + A Q +GEA Y +
Sbjct: 1 KLDPTYTSATLLFQ--KHPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCD 58
Query: 690 DLPQLSEEYFASVVLAERGPAKIQSIDSTLALV--SCAMSQGSEDFETKQNLWPLTKPLP 747
D+P+ E F +V + R AKI+SID + A ++D
Sbjct: 59 DIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLFNDETV 118
Query: 748 KIDAITQCAGEA 759
C G
Sbjct: 119 FAKDTVTCVGHI 130
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 76
Score = 56.1 bits (135), Expect = 2e-10
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 47/113 (41%)
Query: 116 HNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSL 175
H VQ +G QCG+C+PGM+M Y +
Sbjct: 6 HAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQ----------------------------- 36
Query: 176 EVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
+ T++E+ + GN+CRCTG++ I+ A Q +
Sbjct: 37 ------------------ENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAA 71
Score = 36.5 bits (84), Expect = 0.002
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 335 MCREGG--CGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
+E G CG CT + ++ A T N+CRCTG++ I+ A Q +
Sbjct: 12 FYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAA 71
>d1rm6c1 a.56.1.1 (C:82-157) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 76
Score = 55.8 bits (134), Expect = 3e-10
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 116 HNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSL 175
+Q G+QCG+C+PGM+MA + R
Sbjct: 5 SKLQAAFHEKLGTQCGFCTPGMIMASEALLR----------------------------- 35
Query: 176 EVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
K ++ E++ AL GN+CRCTG+ I+ + ++ +
Sbjct: 36 ------------------KNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAA 70
Score = 37.7 bits (87), Expect = 6e-04
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 340 GCGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT + + + N+CRCTG+ I+ + ++ +
Sbjct: 18 QCGFCTPGMIMASEALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAA 70
>d1n62a1 a.56.1.1 (A:82-163) Carbon monoxide (CO) dehydrogenase
iron-sulfur protein, C-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 82
Score = 55.0 bits (132), Expect = 6e-10
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 116 HNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSL 175
+Q M+G QCGYC+PGM+M + +
Sbjct: 7 SALQEGFRMMHGLQCGYCTPGMIMRSHRLLQ----------------------------- 37
Query: 176 EVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
+ T++E+ +GGN+CRCTG++ I+ A Q +
Sbjct: 38 ------------------ENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAA 72
Score = 40.8 bits (95), Expect = 6e-05
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 341 CGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFS 392
CG CT + ++ A N+CRCTG++ I+ A Q +
Sbjct: 21 CGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAA 72
>d1n62b1 d.41.1.1 (B:6-146) Carbon monoxide (CO) dehydrogenase
molybdoprotein, N-domain {Oligotropha carboxidovorans,
formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 141
Score = 56.0 bits (134), Expect = 1e-09
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 38/168 (22%)
Query: 734 ETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTL 793
E + L + +++ I G+ YV+D+ L F V + A+I+SID++
Sbjct: 8 ERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSIDTSK 66
Query: 794 ALAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAA 853
A A PGV + A D+ NL G +
Sbjct: 67 AKALPGVFAVLTAADLKPLNLHYMPTLAGDVQ---------------------------- 98
Query: 854 WPGQIFEDEKLFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD 901
+ A+ +V F Q + ++A + A +A ++V+V Y
Sbjct: 99 ---------AVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEP 137
Score = 29.0 bits (64), Expect = 2.6
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 660 ETKQNLWPLTKPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLAERGPAKIQSIDSTL 719
E + L + +++ I G+ YV+D+ L F V + A+I+SID++
Sbjct: 8 ERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSIDTSK 66
Query: 720 AL 721
A
Sbjct: 67 AK 68
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small
subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 53.8 bits (129), Expect = 1e-09
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 47/112 (41%)
Query: 116 HNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSL 175
+ +Q + QCG+C+ GM+ S
Sbjct: 6 NALQDSFRRHHALQCGFCTAGMLATARS-------------------------------- 33
Query: 176 EVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSF 227
+ + ++ EV + GN+CRCTG+ I+DA
Sbjct: 34 ---------------ILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDP 70
Score = 35.3 bits (81), Expect = 0.005
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 340 GCGVCT-VTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSF 391
CG CT + ++ + + S + + N+CRCTG+ I+DA
Sbjct: 19 QCGFCTAGMLATARSILAENPAPSRDE-VREVMSGNLCRCTGYETIIDAITDP 70
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain
2 {Rhodobacter capsulatus [TaxId: 1061]}
Length = 82
Score = 53.1 bits (127), Expect = 3e-09
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 51/116 (43%)
Query: 116 HNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPFSL 175
H VQ + +GSQCG+C+PG +++M + H
Sbjct: 5 HPVQQAMIDHHGSQCGFCTPGFIVSMAAAH------------------------------ 34
Query: 176 EVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFSCDA 231
+ + + L GN+CRCTG+ PIL A ++ + +
Sbjct: 35 ---------------------DRDRKDYDDLLAGNLCRCTGYAPILRAAEAAAGEP 69
Score = 33.0 bits (75), Expect = 0.039
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 340 GCGVCTVTVTSSHPVTGVDSTYSVNACGDRCFTRNICRCTGFRPILDAFQSFSCDA 395
CG CT S D N+CRCTG+ PIL A ++ + +
Sbjct: 18 QCGFCTPGFIVSMAAAHDRDRKDY----DDLLAGNLCRCTGYAPILRAAEAAAGEP 69
>d1rm6a1 d.41.1.1 (A:9-133) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 125
Score = 54.4 bits (130), Expect = 3e-09
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 41/158 (25%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
P +D + + G+A+Y D+ + ++ + A+I +ID++ A A GV
Sbjct: 5 VRTPLVDGVEKVTGKAKYTADIA-APDALVGRILRSPHAHARILAIDTSAAEALEGVIAV 63
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ P I E+E
Sbjct: 64 CTGAETPVPF----------------------------------------GVLPIAENEY 83
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSD 901
A ++V + G + A+ A + +A +A ++KV Y
Sbjct: 84 PLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEV 121
Score = 29.0 bits (64), Expect = 1.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 670 KPLPKIDAITQCAGEAEYVNDLPQ 693
P +D + + G+A+Y D+
Sbjct: 5 VRTPLVDGVEKVTGKAKYTADIAA 28
>d1ffvb1 d.41.1.1 (B:7-146) Carbon monoxide (CO) dehydrogenase
molybdoprotein, N-domain {Hydrogenophaga pseudoflava
[TaxId: 47421]}
Length = 140
Score = 49.4 bits (117), Expect = 2e-07
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+ + G+ YV+D+ + +V A +I+ I ALA PGVH
Sbjct: 14 ASRLRKEDARFIQGKGNYVDDIK-MPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAV 72
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
+ A+D+ L G +
Sbjct: 73 LTAEDLKPLKLHWMPTLAGDVA-------------------------------------A 95
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLD 908
+ A+ +V F Q + +IAD+ A +A + VKV Y D +D
Sbjct: 96 VLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEY-DELPVVID 139
>d1t3qb1 d.41.1.1 (B:1-165) Quinoline 2-oxidoreductase large subunit
QorL, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 165
Score = 48.3 bits (114), Expect = 8e-07
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 34/168 (20%)
Query: 744 KPLPKIDAITQCAGEAEYVNDLPQLSEEYFASVVLADRGPAKIQSIDSTLALAYPGVHTF 803
+ + + G Y+ DL LS + + + A+I SID A A PGV
Sbjct: 16 TSVLRREDTRLLTGRGRYIADLV-LSGMLHVASLRSPFAHARIVSIDVADAQALPGVELV 74
Query: 804 VHAKDIPGKNLAIPAAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEK 863
D+ + I A G +
Sbjct: 75 WCGADVAELSQGIVATMQ--------------------------------VEGFQTTIQP 102
Query: 864 LFAENEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVKTPKLDIKQ 911
L A F G+I+ ++A + A +AA++++V Y + I+
Sbjct: 103 LLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEY-EELPAVTGIEA 149
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
{Desulfovibrio gigas [TaxId: 879]}
Length = 113
Score = 45.9 bits (108), Expect = 2e-06
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 45/115 (39%)
Query: 114 GYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCGHNFTKTLLLQMYCIFLPPF 173
H +Q G+QCG+CSPG +++
Sbjct: 4 NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLD--------------------------- 36
Query: 174 SLEVLFVILLIFVIVSFLEGKKYKVTKSEVEGALGGNICRCTGFRPILDAFQSFS 228
N CRCTG++P++DA +
Sbjct: 37 ------------------TNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAA 73
Score = 32.8 bits (74), Expect = 0.071
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 335 MCREGG--CGVCTVTVTSSHPVTGVDSTYSVNACGDR---CFTRNICRCTGFRPILDAFQ 389
GG CG C+ +D+ + R RN CRCTG++P++DA
Sbjct: 12 WVLHGGAQCGFCS-PGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVM 70
Query: 390 SFS 392
+
Sbjct: 71 DAA 73
>d1vlba3 d.41.1.1 (A:194-310) Aldehyde oxidoreductase, domain 3
{Desulfovibrio gigas [TaxId: 879]}
Length = 117
Score = 43.3 bits (101), Expect = 2e-05
Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 33/144 (22%)
Query: 760 EYVNDLPQLSEE--YFASVVLADRGPAKIQSIDSTLALAYPGVHTFVHAKDIPGKNLAIP 817
+Y DL ++V A A I+ ID++ AL PGVH+ + KD+ GKN
Sbjct: 1 DYGADLGLKMPAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKGKNRITG 60
Query: 818 AAWPGQIFEDEKAYPGVHTFVHAKDIPGKNLAIPAAWPGQIFEDEKLFAENEVEFAGQII 877
I D + + +V G I
Sbjct: 61 -------------------------------LITFPTNKGDGWDRPILCDEKVFQYGDCI 89
Query: 878 GAIIADNFKSAYEAAKMVKVVYSD 901
+ AD+ +A AA+ VKV +
Sbjct: 90 ALVCADSEANARAAAEKVKVDLEE 113
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 35.3 bits (81), Expect = 0.007
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 17 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
+T TVR + +G + E+P +++ +RD C G CG C + S
Sbjct: 12 NTPFTVRLSRSGTSF----EIPANRSILEVLRDANV--RVPSSCESGTCGSCKTALCS 63
Score = 35.3 bits (81), Expect = 0.007
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 293 DTSSTVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
+T TVR + +G + E+P +++ +RD C G CG C + S
Sbjct: 12 NTPFTVRLSRSGTSF----EIPANRSILEVLRDANV--RVPSSCESGTCGSCKTALCS 63
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 34.9 bits (79), Expect = 0.012
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 22 VRFTINGVVYIIGAEVPPGTRLVDFIR----DYARLKGTKYMCREGGCGVCTVTVTS 74
VR +N + EVPPGT ++D + D K++ G C +C V +
Sbjct: 2 VRVKVNDRIV----EVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGL 54
Score = 34.9 bits (79), Expect = 0.012
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 298 VRFTINGVVYIIGAEVPPGTRLVDFIR----DYARLKGTKYMCREGGCGVCTVTVTS 350
VR +N + EVPPGT ++D + D K++ G C +C V +
Sbjct: 2 VRVKVNDRIV----EVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGL 54
>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId:
9823]}
Length = 78
Score = 31.7 bits (72), Expect = 0.090
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 25/91 (27%)
Query: 523 EVREIFEIFDGLEANQTYMLVGGNTGYGVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLM 582
E++ IFE + E G+ +EL+Q+ L+
Sbjct: 8 ELKSIFEKYAAKE---------GDPNQ---------------LSKEELKQLIQAEFPSLL 43
Query: 583 GSATTLTEAMDYFDRTSKTDANF-EYMRIMK 612
TL + D+ + +F E+ ++K
Sbjct: 44 KGPRTLDDLFQELDKNGDGEVSFEEFQVLVK 74
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta
subunit HrcB, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 216
Score = 33.9 bits (77), Expect = 0.099
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 529 EIFDGLEANQTYMLVGGNTGYGVYRPRV-PVDVYIQIRDIKELR-QIFTRNGYVLMGSAT 586
+ + L A T L G R + + + I L +G + +G+
Sbjct: 17 DAVNALAAEATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGA 76
Query: 587 TLTEAMDYFDRTSKTDANFEYMRIMKDHLEQVAHYAVRNFA 627
TL ++ + E VA R A
Sbjct: 77 TLEAIAEHDAIR-------TTWPALAQAAESVAGPTHRAAA 110
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 32.3 bits (73), Expect = 0.10
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ G + I EVP ++D + + CR G C C + S
Sbjct: 6 TLINEAEGTKHEI--EVPDDEYILDAAEEQGY--DLPFSCRAGACSTCAGKLVSGTV 58
Score = 32.3 bits (73), Expect = 0.10
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 353
T+ G + I EVP ++D + + CR G C C + S
Sbjct: 6 TLINEAEGTKHEI--EVPDDEYILDAAEEQGY--DLPFSCRAGACSTCAGKLVSGTV 58
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 31.9 bits (72), Expect = 0.11
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 6/82 (7%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTG 356
+ + I E+ T ++D + + C G C C V
Sbjct: 6 RLINKKQDIDTTI--EIDEETTILDGAEENGI--ELPFSCHSGSCSSCVGKVVEGEVDQ- 60
Query: 357 VDSTYSVNACGDRCFTRNICRC 378
++ +C
Sbjct: 61 -SDQIFLDDEQMGKGFALLCVT 81
Score = 30.0 bits (67), Expect = 0.53
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
+ + I E+ T ++D + + C G C C V
Sbjct: 6 RLINKKQDIDTTI--EIDEETTILDGAEENGI--ELPFSCHSGSCSSCVGKVVEGEV 58
>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId:
9913]}
Length = 76
Score = 31.4 bits (71), Expect = 0.12
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 523 EVREIFEIFDGLEANQTYMLVGGNTGYGVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLM 582
E++ FE+F E G+ I +EL+ + G L+
Sbjct: 6 EIKGAFEVFAAKE---------GDPN------------QI---SKEELKLVMQTLGPSLL 41
Query: 583 GSATTLTEAMDYFDRTSKTDANF-EYMRIMK 612
+TL E ++ D+ + +F E++ +MK
Sbjct: 42 KGMSTLDEMIEEVDKNGDGEVSFEEFLVMMK 72
>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis
[TaxId: 5722]}
Length = 93
Score = 31.5 bits (71), Expect = 0.17
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 2/57 (3%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 77
T+ GV + + L + + + CG C S
Sbjct: 2 TITAVKGGVKKQL--KFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKV 56
Score = 31.5 bits (71), Expect = 0.17
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 2/57 (3%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHP 353
T+ GV + + L + + + CG C S
Sbjct: 2 TITAVKGGVKKQL--KFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKV 56
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 30.4 bits (68), Expect = 1.0
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 524 VREIFEIFDGLEANQTYMLVGGNTG--YGVYRPRVPVDVYIQIRDIKELRQIFTRNGY 579
+R+I++ +++ G + GV +D+ E+ +IF+
Sbjct: 10 LRKIYDRLK--NEKVNWVVTGSLSFALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVS 65
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/113 (12%), Positives = 24/113 (21%), Gaps = 20/113 (17%)
Query: 42 RLVDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVTGVDSTYSVNACLVLVHMCGGWA 101
D ++ + G+ GG VT P + +
Sbjct: 86 TYPDLLKKACQEVGSVAQ-VAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNM 144
Query: 102 ITTVEGLGSKKKGYHNVQTRLATMNGSQCGYCSPGMVMAMYSRHRLTASTMCG 154
LG C PG+++ S L +
Sbjct: 145 FDGALLLGI-------------------CDKIVPGLLIGALSFGHLPMLFVPA 178
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 97
Score = 28.8 bits (64), Expect = 1.5
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 36 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
+ P ++D + + Y CR G C C + +
Sbjct: 17 QCPDDVYILDAAEE-EGID-LPYSCRAGSCSSCAGKLKT 53
Score = 28.8 bits (64), Expect = 1.5
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 312 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
+ P ++D + + Y CR G C C + +
Sbjct: 17 QCPDDVYILDAAEE-EGID-LPYSCRAGSCSSCAGKLKT 53
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 511
Score = 30.4 bits (68), Expect = 1.7
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 848 LAIPAAWPGQIFEDEKLFAE----NEVEFAGQIIGAIIADNFKSAYEAAKMVKVVYSDVK 903
L IP P + LF + + + A I+ IA + ++K YS +
Sbjct: 34 LFIPPTIP--QVDQATLFNDWSKLSFQDLAFAIMRLYIAQEEIPDADLKDLIKRSYSTFR 91
Query: 904 TPKL--DIKQIVQDGDKARIVEMF 925
+ ++ ++ + D + I+E+F
Sbjct: 92 SDEVTPLVQNVTGDKENLHILELF 115
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 18 TSSTVRFTIN-GVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
++ V GV I + G L D ++ CREG CG C S
Sbjct: 1 SNHQVALQFEDGVTRFI--CIAQGETLSDAAYR-QQI-NIPMDCREGECGTCRAFCES 54
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 294 TSSTVRFTIN-GVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
++ V GV I + G L D ++ CREG CG C S
Sbjct: 1 SNHQVALQFEDGVTRFI--CIAQGETLSDAAYR-QQI-NIPMDCREGECGTCRAFCES 54
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens),
s100a13 [TaxId: 9606]}
Length = 98
Score = 27.9 bits (62), Expect = 2.8
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 22/90 (24%)
Query: 523 EVREIFEIFDGLEANQTYMLVGGNTGYGVYRPRVPVDVYIQIRDIKELRQIFTRNGYVLM 582
+ + F T+ G + E +++ T+ L+
Sbjct: 12 SIETVVTTF------FTFARQEGRKDS---------------LSVNEFKELVTQQLPHLL 50
Query: 583 GSATTLTEAMDYFDRTSKTDANF-EYMRIM 611
+L E M D ++ F EY R++
Sbjct: 51 KDVGSLDEKMKSLDVNQDSELKFNEYWRLI 80
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 98
Score = 27.6 bits (61), Expect = 4.1
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 21 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
+ N I E ++D Y CR G C C +
Sbjct: 4 NITLRTNDGEKKI--ECNEDEYILDASERQNV--ELPYSCRGGSCSTCAAKLVE 53
Score = 27.6 bits (61), Expect = 4.1
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 297 TVRFTINGVVYIIGAEVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
+ N I E ++D Y CR G C C +
Sbjct: 4 NITLRTNDGEKKI--ECNEDEYILDASERQNV--ELPYSCRGGSCSTCAAKLVE 53
>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense
[TaxId: 3258]}
Length = 95
Score = 27.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 36 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
+VP GT ++D + A + CR G C C V S
Sbjct: 16 DVPEGTTILDAAEE-AGYD-LPFSCRAGACSSCLGKVVS 52
Score = 27.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 312 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
+VP GT ++D + A + CR G C C V S
Sbjct: 16 DVPEGTTILDAAEE-AGYD-LPFSCRAGACSSCLGKVVS 52
>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli
[TaxId: 562]}
Length = 171
Score = 27.9 bits (62), Expect = 6.1
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 146 RLTASTMCGHNFTKTLLLQMYCIFLPPFSLEVLFVILLIFVIV 188
RL + G +L+ + + L V + I I +I
Sbjct: 116 RLFGNMYAGELI--FILIAGLLPWWSQWILNVPWAIFHILIIT 156
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 27.6 bits (61), Expect = 6.3
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 36 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 74
EV G +++ + CR G C C V
Sbjct: 41 EVNEGEYILEAAEA-QGYD-WPFSCRAGACANCAAIVLE 77
Score = 27.6 bits (61), Expect = 6.3
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 312 EVPPGTRLVDFIRDYARLKGTKYMCREGGCGVCTVTVTS 350
EV G +++ + CR G C C V
Sbjct: 41 EVNEGEYILEAAEA-QGYD-WPFSCRAGACANCAAIVLE 77
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 28.0 bits (61), Expect = 7.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 54 KGTKYMCREGGCGVCTVTVTSSHPV 78
KG M R GGCG+C + +P
Sbjct: 182 KGYIRMLRVGGCGLCGIARLPYYPT 206
Score = 28.0 bits (61), Expect = 7.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 330 KGTKYMCREGGCGVCTVTVTSSHPV 354
KG M R GGCG+C + +P
Sbjct: 182 KGYIRMLRVGGCGLCGIARLPYYPT 206
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 114
Score = 27.1 bits (60), Expect = 7.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 427 PTYRKNLAVSLFYK 440
+R+ L +S F+K
Sbjct: 91 IEFRRTLTLSFFFK 104
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow
(Bos taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 26.5 bits (58), Expect = 9.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 44 VDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 79
+ + KG ++ R+G + T VT + +T
Sbjct: 60 LILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMT 95
Score = 26.5 bits (58), Expect = 9.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 320 VDFIRDYARLKGTKYMCREGGCGVCTVTVTSSHPVT 355
+ + KG ++ R+G + T VT + +T
Sbjct: 60 LILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMT 95
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 28.2 bits (62), Expect = 9.2
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 707 RGPAKIQSIDSTLALVSCAMSQGSEDFETKQNLWPLTKPLPKIDAI 752
+ D+ L+ + +E Q + K +P+ID I
Sbjct: 14 TTVGSVVRFDNVTLLIDPGWNPSKVSYE--QCIKYWEKVIPEIDVI 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,652,972
Number of extensions: 273502
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 107
Length of query: 1520
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1423
Effective length of database: 1,075,786
Effective search space: 1530843478
Effective search space used: 1530843478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)