Query psy7005
Match_columns 88
No_of_seqs 116 out of 1264
Neff 10.2
Searched_HMMs 46136
Date Sat Aug 17 00:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.7 1.4E-15 3.1E-20 99.3 9.5 78 2-80 394-472 (485)
2 KOG0254|consensus 99.4 2.6E-12 5.6E-17 84.6 8.7 81 1-81 420-502 (513)
3 PF00083 Sugar_tr: Sugar (and 99.4 1.3E-14 2.8E-19 93.4 -2.8 77 1-77 374-451 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.4 2.6E-12 5.7E-17 84.2 6.5 73 2-75 418-501 (502)
5 PRK10077 xylE D-xylose transpo 99.3 1.5E-11 3.3E-16 79.7 9.1 81 1-81 389-476 (479)
6 KOG0252|consensus 99.2 2.1E-11 4.6E-16 79.4 4.7 75 2-77 432-512 (538)
7 TIGR00879 SP MFS transporter, 98.9 1.1E-08 2.4E-13 65.6 6.4 71 2-72 409-480 (481)
8 TIGR00898 2A0119 cation transp 98.6 1.5E-07 3.3E-12 61.7 6.6 68 1-71 435-503 (505)
9 TIGR01299 synapt_SV2 synaptic 98.6 2E-07 4.4E-12 64.4 7.3 67 2-70 674-741 (742)
10 PRK10489 enterobactin exporter 98.5 3E-07 6.6E-12 59.1 5.8 74 2-75 338-412 (417)
11 TIGR00880 2_A_01_02 Multidrug 98.5 7.4E-07 1.6E-11 48.4 6.1 64 2-65 77-141 (141)
12 KOG0253|consensus 98.5 2.4E-07 5.2E-12 59.9 3.8 67 2-70 460-527 (528)
13 TIGR00903 2A0129 major facilit 98.4 3.8E-06 8.2E-11 53.8 8.1 65 2-66 104-169 (368)
14 PRK15403 multidrug efflux syst 98.3 5E-06 1.1E-10 53.8 8.1 66 2-67 130-196 (413)
15 TIGR00893 2A0114 d-galactonate 98.3 2.9E-06 6.3E-11 53.1 6.6 67 2-68 108-175 (399)
16 TIGR00710 efflux_Bcr_CflA drug 98.3 6E-06 1.3E-10 52.1 7.1 67 2-68 119-186 (385)
17 PRK10642 proline/glycine betai 98.3 2.5E-06 5.5E-11 56.2 5.3 68 2-70 368-437 (490)
18 PRK11102 bicyclomycin/multidru 98.2 1.3E-05 2.9E-10 50.6 7.9 65 2-66 105-170 (377)
19 PRK03545 putative arabinose tr 98.2 1.3E-05 2.8E-10 51.2 7.7 66 2-67 123-189 (390)
20 PRK14995 methyl viologen resis 98.2 6.6E-06 1.4E-10 54.4 6.5 62 6-67 126-187 (495)
21 TIGR00889 2A0110 nucleoside tr 98.2 1.5E-05 3.2E-10 51.8 7.8 67 2-68 334-408 (418)
22 PRK11663 regulatory protein Uh 98.2 5.9E-06 1.3E-10 53.7 5.7 67 2-68 363-430 (434)
23 PRK10473 multidrug efflux syst 98.2 1.7E-05 3.7E-10 50.6 7.6 67 2-68 117-184 (392)
24 TIGR00711 efflux_EmrB drug res 98.2 1.7E-06 3.6E-11 56.4 3.0 67 2-68 116-183 (485)
25 PRK10213 nepI ribonucleoside t 98.2 2E-05 4.4E-10 50.7 7.9 66 2-67 134-200 (394)
26 TIGR00887 2A0109 phosphate:H+ 98.2 3.2E-05 6.8E-10 51.2 8.9 63 2-65 141-227 (502)
27 TIGR02332 HpaX 4-hydroxyphenyl 98.1 1.6E-05 3.4E-10 51.5 7.0 66 2-67 122-194 (412)
28 PRK11663 regulatory protein Uh 98.1 2.2E-05 4.7E-10 51.1 7.4 64 2-65 137-201 (434)
29 COG2814 AraJ Arabinose efflux 98.0 3.7E-05 8E-10 50.0 7.3 62 2-63 127-189 (394)
30 PRK15402 multidrug efflux syst 98.0 3.9E-05 8.4E-10 49.2 7.3 66 2-67 127-193 (406)
31 PRK10091 MFS transport protein 98.0 3.8E-05 8.2E-10 49.1 7.0 66 2-67 117-183 (382)
32 TIGR00895 2A0115 benzoate tran 98.0 1.2E-05 2.6E-10 50.7 4.1 66 2-67 131-197 (398)
33 PRK11273 glpT sn-glycerol-3-ph 97.9 0.0001 2.2E-09 48.2 8.0 64 3-66 374-440 (452)
34 TIGR00901 2A0125 AmpG-related 97.9 8.1E-05 1.8E-09 46.9 7.2 66 2-67 109-183 (356)
35 KOG2532|consensus 97.9 0.00026 5.7E-09 47.0 9.6 73 6-78 159-236 (466)
36 PRK09874 drug efflux system pr 97.9 0.00014 3.1E-09 46.4 8.2 64 3-66 133-197 (408)
37 PLN00028 nitrate transmembrane 97.9 0.00011 2.4E-09 48.5 7.8 63 2-64 149-221 (476)
38 PRK11551 putative 3-hydroxyphe 97.9 7.1E-05 1.5E-09 47.9 6.5 65 2-66 129-194 (406)
39 KOG0255|consensus 97.9 0.00018 4E-09 47.8 8.5 69 2-71 432-501 (521)
40 TIGR00894 2A0114euk Na(+)-depe 97.9 0.00017 3.6E-09 47.2 8.3 64 2-65 157-222 (465)
41 TIGR00900 2A0121 H+ Antiporter 97.9 0.0002 4.3E-09 44.7 8.3 59 2-60 118-177 (365)
42 TIGR00712 glpT glycerol-3-phos 97.9 8.1E-05 1.8E-09 48.4 6.7 65 2-66 144-210 (438)
43 PF07690 MFS_1: Major Facilita 97.9 1.4E-05 3E-10 49.7 2.8 67 2-68 111-178 (352)
44 TIGR00712 glpT glycerol-3-phos 97.8 3.8E-05 8.2E-10 50.0 4.7 65 2-66 371-437 (438)
45 PRK11646 multidrug resistance 97.8 0.0003 6.5E-09 45.4 8.0 64 2-66 125-189 (400)
46 TIGR00879 SP MFS transporter, 97.8 0.00012 2.6E-09 47.0 6.0 64 2-66 153-220 (481)
47 PRK11010 ampG muropeptide tran 97.7 0.00026 5.7E-09 47.0 7.4 64 2-66 133-198 (491)
48 PRK10504 putative transporter; 97.7 0.00033 7.1E-09 45.8 7.5 65 2-66 124-189 (471)
49 PRK11652 emrD multidrug resist 97.7 0.00043 9.2E-09 44.3 7.9 66 3-68 123-189 (394)
50 PRK12307 putative sialic acid 97.7 0.00016 3.5E-09 46.6 5.6 64 2-66 132-196 (426)
51 COG2271 UhpC Sugar phosphate p 97.7 4.4E-05 9.5E-10 50.0 2.9 62 5-66 146-210 (448)
52 PRK12382 putative transporter; 97.6 0.00045 9.7E-09 44.1 7.4 61 2-62 328-389 (392)
53 PRK10077 xylE D-xylose transpo 97.6 0.00069 1.5E-08 44.3 8.3 65 1-66 145-218 (479)
54 KOG0255|consensus 97.6 0.00041 8.8E-09 46.1 7.3 62 1-66 196-258 (521)
55 PRK09705 cynX putative cyanate 97.6 0.00083 1.8E-08 43.2 8.5 65 6-70 324-389 (393)
56 TIGR00891 2A0112 putative sial 97.6 0.00046 1E-08 43.7 7.3 65 2-67 126-193 (405)
57 TIGR00881 2A0104 phosphoglycer 97.6 2E-05 4.3E-10 49.3 1.0 65 2-66 109-175 (379)
58 PRK10054 putative transporter; 97.6 0.00047 1E-08 44.4 7.3 64 2-66 122-186 (395)
59 PRK09556 uhpT sugar phosphate 97.6 0.00037 8.1E-09 45.8 6.8 58 2-59 375-446 (467)
60 TIGR00893 2A0114 d-galactonate 97.6 0.00025 5.4E-09 44.4 5.7 58 2-59 337-396 (399)
61 PRK05122 major facilitator sup 97.6 0.00087 1.9E-08 42.9 8.1 64 3-67 329-393 (399)
62 PRK15462 dipeptide/tripeptide 97.6 0.00026 5.6E-09 47.4 5.5 56 2-57 126-184 (493)
63 TIGR00886 2A0108 nitrite extru 97.5 0.00052 1.1E-08 43.2 6.6 64 2-65 116-191 (366)
64 PRK15034 nitrate/nitrite trans 97.5 0.0015 3.2E-08 43.5 8.8 77 2-78 153-250 (462)
65 TIGR00903 2A0129 major facilit 97.5 0.00033 7.2E-09 45.0 5.6 61 2-65 306-367 (368)
66 PRK11273 glpT sn-glycerol-3-ph 97.5 0.00068 1.5E-08 44.4 7.1 65 2-66 146-212 (452)
67 TIGR00899 2A0120 sugar efflux 97.5 0.001 2.2E-08 41.9 7.5 55 13-67 127-181 (375)
68 PRK03893 putative sialic acid 97.5 0.00061 1.3E-08 44.8 6.6 64 2-66 134-198 (496)
69 KOG1330|consensus 97.5 2.6E-06 5.5E-11 56.1 -4.5 75 1-75 146-222 (493)
70 TIGR00892 2A0113 monocarboxyla 97.5 0.00099 2.2E-08 43.8 7.4 58 6-63 138-195 (455)
71 PRK11043 putative transporter; 97.5 0.0019 4.2E-08 41.4 8.3 63 2-65 120-183 (401)
72 TIGR00892 2A0113 monocarboxyla 97.4 8.8E-05 1.9E-09 48.7 2.1 56 2-57 359-416 (455)
73 PRK10406 alpha-ketoglutarate t 97.4 0.00041 9E-09 45.1 5.2 66 2-70 362-430 (432)
74 TIGR00890 2A0111 Oxalate/Forma 97.4 0.0005 1.1E-08 43.0 5.0 53 2-54 321-374 (377)
75 PRK11902 ampG muropeptide tran 97.4 0.0015 3.3E-08 42.0 7.2 65 2-67 120-186 (402)
76 PRK09952 shikimate transporter 97.4 0.0014 3.1E-08 42.8 7.1 64 2-66 369-436 (438)
77 PRK10642 proline/glycine betai 97.4 0.0011 2.3E-08 44.0 6.5 64 2-66 144-216 (490)
78 PRK03545 putative arabinose tr 97.4 0.0021 4.5E-08 41.2 7.6 58 6-63 324-381 (390)
79 cd06174 MFS The Major Facilita 97.3 0.00083 1.8E-08 41.5 5.5 58 2-59 291-349 (352)
80 KOG2533|consensus 97.3 0.00012 2.5E-09 49.0 1.7 64 4-67 162-232 (495)
81 TIGR00890 2A0111 Oxalate/Forma 97.3 0.0017 3.8E-08 40.6 6.8 60 6-65 121-180 (377)
82 PRK10207 dipeptide/tripeptide 97.3 0.0011 2.5E-08 44.2 6.1 48 2-49 131-181 (489)
83 PRK10489 enterobactin exporter 97.3 0.0041 8.8E-08 40.2 8.5 64 2-66 136-200 (417)
84 COG2223 NarK Nitrate/nitrite t 97.3 0.0017 3.7E-08 42.6 6.6 65 2-67 130-198 (417)
85 cd06174 MFS The Major Facilita 97.3 0.0018 4E-08 40.0 6.5 58 2-59 113-171 (352)
86 PRK12307 putative sialic acid 97.3 0.0012 2.6E-08 42.5 5.9 64 2-65 347-412 (426)
87 PRK09528 lacY galactoside perm 97.3 0.00095 2.1E-08 43.2 5.4 64 2-65 341-406 (420)
88 PRK15011 sugar efflux transpor 97.2 0.0056 1.2E-07 39.4 8.5 54 14-67 146-199 (393)
89 TIGR00898 2A0119 cation transp 97.2 0.0042 9.2E-08 41.0 7.9 62 1-66 205-267 (505)
90 PRK03893 putative sialic acid 97.2 0.00041 8.9E-09 45.6 3.1 63 2-64 392-456 (496)
91 PRK15075 citrate-proton sympor 97.2 0.0013 2.8E-08 42.9 5.3 70 2-71 357-428 (434)
92 PRK11551 putative 3-hydroxyphe 97.2 0.0019 4.1E-08 41.4 5.9 59 2-60 334-394 (406)
93 KOG2816|consensus 97.1 0.005 1.1E-07 41.1 7.8 71 1-71 137-208 (463)
94 PRK06814 acylglycerophosphoeth 97.1 0.0026 5.7E-08 46.0 7.0 64 2-66 134-198 (1140)
95 TIGR01299 synapt_SV2 synaptic 97.1 0.0043 9.4E-08 43.6 7.5 63 2-65 281-357 (742)
96 PRK15075 citrate-proton sympor 97.0 0.0044 9.5E-08 40.4 6.8 47 2-48 143-198 (434)
97 PRK15011 sugar efflux transpor 97.0 0.0069 1.5E-07 39.0 7.4 62 3-65 332-393 (393)
98 TIGR00792 gph sugar (Glycoside 97.0 0.0097 2.1E-07 38.5 8.1 65 2-66 125-198 (437)
99 TIGR02718 sider_RhtX_FptX side 97.0 0.015 3.2E-07 37.3 8.6 60 6-65 128-187 (390)
100 PRK11195 lysophospholipid tran 96.9 0.0087 1.9E-07 38.7 7.5 63 2-66 114-177 (393)
101 PRK03699 putative transporter; 96.9 0.01 2.3E-07 38.1 7.8 57 2-58 121-179 (394)
102 PF06609 TRI12: Fungal trichot 96.9 0.0017 3.8E-08 44.5 4.4 65 1-65 155-221 (599)
103 PRK10406 alpha-ketoglutarate t 96.9 0.0046 1E-07 40.3 6.2 64 2-66 150-222 (432)
104 PF03825 Nuc_H_symport: Nucleo 96.9 0.0088 1.9E-07 39.1 7.3 65 2-66 327-399 (400)
105 TIGR00897 2A0118 polyol permea 96.9 0.013 2.8E-07 37.9 7.8 57 3-59 342-398 (402)
106 PRK09874 drug efflux system pr 96.9 0.0041 9E-08 39.7 5.6 59 6-64 342-400 (408)
107 PRK09584 tppB putative tripept 96.8 0.0089 1.9E-07 40.0 7.0 64 2-65 138-207 (500)
108 KOG3764|consensus 96.8 0.00073 1.6E-08 44.4 1.7 68 2-69 185-254 (464)
109 TIGR00883 2A0106 metabolite-pr 96.8 0.011 2.4E-07 37.2 7.0 64 2-66 122-194 (394)
110 KOG0254|consensus 96.8 0.0093 2E-07 39.9 6.9 64 1-66 167-233 (513)
111 PF01306 LacY_symp: LacY proto 96.8 0.0077 1.7E-07 39.7 6.3 67 2-68 338-406 (412)
112 TIGR00924 yjdL_sub1_fam amino 96.8 0.0063 1.4E-07 40.5 5.9 49 8-56 138-186 (475)
113 KOG2504|consensus 96.6 0.0072 1.6E-07 40.8 5.5 58 6-63 165-222 (509)
114 PF13347 MFS_2: MFS/sugar tran 96.6 0.011 2.3E-07 38.5 6.1 63 2-64 129-200 (428)
115 PRK08633 2-acyl-glycerophospho 96.6 0.018 3.9E-07 41.7 7.5 66 1-66 128-203 (1146)
116 PRK12382 putative transporter; 96.5 0.015 3.3E-07 37.2 6.3 49 2-50 138-187 (392)
117 TIGR00899 2A0120 sugar efflux 96.5 0.027 5.8E-07 35.5 7.3 56 3-58 315-370 (375)
118 TIGR01272 gluP glucose/galacto 96.4 0.015 3.3E-07 36.6 5.8 65 3-67 37-119 (310)
119 TIGR00897 2A0118 polyol permea 96.4 0.019 4.1E-07 37.1 6.3 62 3-64 132-195 (402)
120 PRK09705 cynX putative cyanate 96.4 0.057 1.2E-06 34.8 8.3 49 6-54 127-176 (393)
121 PRK09952 shikimate transporter 96.4 0.018 4E-07 37.7 6.1 64 2-66 151-223 (438)
122 PTZ00207 hypothetical protein; 96.3 0.13 2.9E-06 35.6 10.0 60 6-66 150-209 (591)
123 TIGR00885 fucP L-fucose:H+ sym 96.3 0.045 9.6E-07 35.8 7.5 62 3-64 121-210 (410)
124 PRK11010 ampG muropeptide tran 96.2 0.032 7E-07 37.3 6.6 62 3-65 343-405 (491)
125 TIGR00806 rfc RFC reduced fola 96.2 0.045 9.8E-07 37.1 7.0 62 3-65 141-205 (511)
126 TIGR02332 HpaX 4-hydroxyphenyl 96.1 0.0071 1.5E-07 39.3 3.3 48 2-49 359-408 (412)
127 PF11700 ATG22: Vacuole efflux 96.1 0.026 5.5E-07 37.9 5.8 67 2-69 406-474 (477)
128 TIGR00792 gph sugar (Glycoside 96.1 0.11 2.4E-06 33.6 8.6 34 7-40 350-383 (437)
129 TIGR00805 oat sodium-independe 96.0 0.06 1.3E-06 37.3 7.5 65 1-66 197-284 (633)
130 PRK05122 major facilitator sup 96.0 0.03 6.6E-07 35.9 5.7 53 2-54 138-191 (399)
131 PRK11128 putative 3-phenylprop 96.0 0.034 7.4E-07 35.6 5.9 57 8-65 125-181 (382)
132 PRK11462 putative transporter; 96.0 0.12 2.5E-06 34.4 8.4 64 2-65 135-207 (460)
133 PRK09669 putative symporter Ya 95.9 0.09 1.9E-06 34.5 7.6 64 2-65 135-207 (444)
134 PRK09556 uhpT sugar phosphate 95.9 0.0035 7.6E-08 41.3 1.1 64 2-65 148-215 (467)
135 TIGR00902 2A0127 phenyl propri 95.9 0.061 1.3E-06 34.5 6.6 44 7-50 124-167 (382)
136 TIGR00896 CynX cyanate transpo 95.9 0.17 3.8E-06 31.9 8.5 58 6-66 117-176 (355)
137 TIGR00881 2A0104 phosphoglycer 95.7 0.0076 1.6E-07 37.7 2.1 42 2-43 336-378 (379)
138 TIGR00891 2A0112 putative sial 95.7 0.023 5E-07 36.1 4.2 42 2-43 354-397 (405)
139 TIGR02718 sider_RhtX_FptX side 95.6 0.13 2.7E-06 33.1 7.3 50 7-56 336-385 (390)
140 KOG2615|consensus 95.6 0.0077 1.7E-07 39.7 1.6 66 1-66 145-217 (451)
141 PRK03633 putative MFS family t 95.6 0.14 3E-06 32.8 7.3 56 3-58 312-368 (381)
142 TIGR00924 yjdL_sub1_fam amino 95.3 0.13 2.7E-06 34.4 6.7 61 3-63 408-469 (475)
143 PF05977 MFS_3: Transmembrane 95.3 0.21 4.6E-06 34.0 7.7 62 6-67 338-400 (524)
144 TIGR00788 fbt folate/biopterin 95.3 0.076 1.7E-06 35.4 5.5 54 12-66 159-212 (468)
145 PRK09528 lacY galactoside perm 95.1 0.11 2.3E-06 33.8 5.8 56 9-65 139-194 (420)
146 PF05977 MFS_3: Transmembrane 95.1 0.12 2.6E-06 35.2 6.1 60 2-61 129-189 (524)
147 PF03092 BT1: BT1 family; Int 95.1 0.092 2E-06 34.7 5.5 60 9-68 122-181 (433)
148 TIGR00883 2A0106 metabolite-pr 95.0 0.016 3.4E-07 36.5 1.8 47 2-48 338-387 (394)
149 KOG0569|consensus 94.9 0.17 3.8E-06 34.2 6.5 65 1-66 141-208 (485)
150 TIGR01301 GPH_sucrose GPH fami 94.9 0.27 5.9E-06 33.2 7.4 67 1-67 139-223 (477)
151 COG2211 MelB Na+/melibiose sym 94.8 0.4 8.7E-06 32.4 7.7 64 2-65 138-210 (467)
152 PRK03699 putative transporter; 94.7 0.14 3E-06 33.0 5.5 57 8-65 326-382 (394)
153 TIGR00788 fbt folate/biopterin 94.7 0.099 2.1E-06 34.8 4.9 37 3-39 378-415 (468)
154 TIGR00882 2A0105 oligosacchari 94.5 0.13 2.8E-06 33.1 5.1 55 6-60 338-393 (396)
155 PF00854 PTR2: POT family; In 94.3 0.22 4.7E-06 32.1 5.7 53 7-59 68-120 (372)
156 PRK08633 2-acyl-glycerophospho 94.1 0.3 6.5E-06 35.6 6.6 64 2-65 348-413 (1146)
157 COG2814 AraJ Arabinose efflux 94.1 0.98 2.1E-05 30.0 8.4 56 6-61 330-385 (394)
158 PRK11902 ampG muropeptide tran 94.1 0.83 1.8E-05 29.5 8.0 51 9-59 337-387 (402)
159 COG2271 UhpC Sugar phosphate p 94.0 0.032 7E-07 37.1 1.5 61 3-63 373-435 (448)
160 TIGR00882 2A0105 oligosacchari 94.0 0.37 7.9E-06 31.0 6.3 53 12-65 134-186 (396)
161 TIGR00894 2A0114euk Na(+)-depe 93.9 0.14 3E-06 33.7 4.3 54 6-59 391-447 (465)
162 PRK15402 multidrug efflux syst 93.9 0.35 7.6E-06 31.2 6.1 58 6-63 339-396 (406)
163 PLN00028 nitrate transmembrane 93.8 0.13 2.8E-06 34.2 4.1 53 6-59 378-430 (476)
164 PRK10504 putative transporter; 93.6 0.24 5.3E-06 32.5 5.1 38 3-40 380-418 (471)
165 TIGR00926 2A1704 Peptide:H+ sy 93.3 1.8 3.9E-05 30.6 8.9 52 8-59 121-179 (654)
166 PRK10054 putative transporter; 93.1 0.43 9.4E-06 30.9 5.6 50 6-56 329-378 (395)
167 PRK11646 multidrug resistance 93.0 0.31 6.8E-06 31.6 4.8 37 2-38 323-360 (400)
168 TIGR00900 2A0121 H+ Antiporter 92.4 0.28 6.2E-06 30.6 4.0 37 2-38 327-364 (365)
169 PRK10091 MFS transport protein 92.4 1.8 3.8E-05 27.8 7.6 53 11-63 324-377 (382)
170 COG3104 PTR2 Dipeptide/tripept 92.4 0.059 1.3E-06 36.4 0.9 52 9-60 153-204 (498)
171 KOG3762|consensus 92.2 0.15 3.3E-06 35.2 2.6 54 6-59 490-544 (618)
172 TIGR00902 2A0127 phenyl propri 92.0 2.2 4.8E-05 27.4 8.0 50 6-56 323-373 (382)
173 PRK10429 melibiose:sodium symp 91.7 2.8 6E-05 28.0 9.4 64 2-65 132-204 (473)
174 PRK09848 glucuronide transport 91.6 2.7 5.8E-05 27.7 8.2 34 7-40 358-391 (448)
175 PRK06814 acylglycerophosphoeth 91.5 0.69 1.5E-05 34.0 5.4 61 3-63 361-423 (1140)
176 PRK15034 nitrate/nitrite trans 90.5 2.6 5.7E-05 28.5 7.1 56 9-64 400-456 (462)
177 PRK03633 putative MFS family t 89.9 2.2 4.7E-05 27.4 6.2 35 3-37 121-156 (381)
178 PRK09584 tppB putative tripept 89.6 3.5 7.6E-05 27.9 7.2 60 3-62 409-479 (500)
179 PF10183 ESSS: ESSS subunit of 89.5 1.2 2.5E-05 24.0 4.0 36 35-70 54-89 (105)
180 COG2223 NarK Nitrate/nitrite t 89.4 1.8 3.8E-05 29.0 5.5 57 6-62 344-401 (417)
181 PRK10133 L-fucose transporter; 89.2 4.1 9E-05 27.0 7.2 32 3-34 144-176 (438)
182 PRK10429 melibiose:sodium symp 89.2 4.9 0.00011 26.8 7.8 33 8-40 364-396 (473)
183 PF03092 BT1: BT1 family; Int 89.0 5.1 0.00011 26.7 8.2 65 2-67 344-417 (433)
184 COG2807 CynX Cyanate permease 88.8 5.2 0.00011 26.7 7.2 52 6-57 129-181 (395)
185 TIGR00895 2A0115 benzoate tran 88.1 0.96 2.1E-05 28.5 3.7 32 2-33 364-396 (398)
186 KOG2532|consensus 87.4 0.53 1.1E-05 31.7 2.2 54 8-61 390-446 (466)
187 KOG2325|consensus 87.4 2 4.4E-05 29.3 4.9 62 6-68 160-235 (488)
188 PRK15403 multidrug efflux syst 87.0 6.6 0.00014 25.7 7.7 45 8-53 344-388 (413)
189 PRK10473 multidrug efflux syst 86.7 3.8 8.3E-05 26.3 5.8 36 14-49 326-361 (392)
190 COG2807 CynX Cyanate permease 85.7 7.6 0.00016 25.9 6.6 55 7-61 329-384 (395)
191 PF00083 Sugar_tr: Sugar (and 85.6 0.0082 1.8E-07 39.1 -6.8 64 1-65 127-194 (451)
192 TIGR01272 gluP glucose/galacto 85.5 4.6 9.9E-05 25.5 5.6 38 9-47 263-300 (310)
193 PRK11462 putative transporter; 85.5 8.7 0.00019 25.7 7.5 35 6-40 354-390 (460)
194 PF06813 Nodulin-like: Nodulin 85.4 1.8 3.9E-05 26.9 3.7 33 5-37 125-157 (250)
195 PRK11043 putative transporter; 84.8 5.3 0.00011 25.7 5.8 32 6-37 326-357 (401)
196 PF03209 PUCC: PUCC protein; 84.4 10 0.00022 25.5 7.0 40 2-41 115-155 (403)
197 TIGR00710 efflux_Bcr_CflA drug 84.3 8.2 0.00018 24.4 6.7 49 6-56 330-378 (385)
198 PRK10213 nepI ribonucleoside t 83.5 9.8 0.00021 24.7 7.2 46 9-54 338-383 (394)
199 PRK11102 bicyclomycin/multidru 83.5 9 0.0002 24.3 6.4 18 6-23 317-334 (377)
200 PRK09669 putative symporter Ya 82.4 12 0.00025 24.7 8.2 32 9-40 360-391 (444)
201 COG2270 Permeases of the major 81.1 1.8 3.8E-05 29.2 2.5 62 6-68 372-434 (438)
202 PF11700 ATG22: Vacuole efflux 80.8 15 0.00033 25.0 7.2 59 9-67 186-252 (477)
203 COG5336 Uncharacterized protei 79.8 7.9 0.00017 21.2 7.5 49 6-54 37-87 (116)
204 KOG4112|consensus 76.8 9.3 0.0002 20.3 4.2 34 23-58 34-67 (101)
205 KOG2533|consensus 75.6 4.5 9.8E-05 27.7 3.3 61 9-69 402-464 (495)
206 KOG2563|consensus 75.1 4.7 0.0001 27.5 3.2 36 2-37 165-202 (480)
207 PF04120 Iron_permease: Low af 73.9 12 0.00026 21.1 4.2 28 42-70 41-68 (132)
208 PTZ00207 hypothetical protein; 71.5 14 0.00031 26.0 4.9 58 11-68 487-558 (591)
209 TIGR00769 AAA ADP/ATP carrier 70.4 32 0.00069 23.6 7.4 42 6-47 298-339 (472)
210 PF06645 SPC12: Microsomal sig 69.5 13 0.00028 18.8 4.1 34 23-58 19-52 (76)
211 PRK11195 lysophospholipid tran 69.3 29 0.00062 22.6 6.8 48 9-57 328-375 (393)
212 PRK11128 putative 3-phenylprop 68.0 29 0.00064 22.3 8.1 46 8-54 325-371 (382)
213 COG0738 FucP Fucose permease [ 67.9 35 0.00077 23.2 6.3 53 6-58 135-206 (422)
214 PRK03612 spermidine synthase; 67.4 39 0.00084 23.4 7.1 46 11-56 145-191 (521)
215 TIGR01301 GPH_sucrose GPH fami 65.9 41 0.00088 23.1 7.1 58 10-67 417-476 (477)
216 KOG4686|consensus 63.7 25 0.00054 23.3 4.5 36 4-39 380-416 (459)
217 PF05631 DUF791: Protein of un 62.1 44 0.00095 22.2 7.6 49 20-68 172-222 (354)
218 PRK09848 glucuronide transport 60.5 46 0.001 22.0 8.4 14 6-19 141-154 (448)
219 PF11712 Vma12: Endoplasmic re 60.3 29 0.00063 19.6 7.4 30 6-35 70-99 (142)
220 KOG2504|consensus 60.3 0.91 2E-05 31.0 -2.3 60 3-63 415-476 (509)
221 COG0738 FucP Fucose permease [ 59.0 51 0.0011 22.5 5.4 37 19-55 366-402 (422)
222 PF05297 Herpes_LMP1: Herpesvi 58.2 3 6.5E-05 26.8 -0.2 57 8-68 129-191 (381)
223 TIGR00926 2A1704 Peptide:H+ sy 58.2 67 0.0015 23.1 7.3 51 6-57 596-646 (654)
224 PF09788 Tmemb_55A: Transmembr 57.5 47 0.001 21.0 5.5 21 7-27 195-215 (256)
225 KOG0252|consensus 56.8 66 0.0014 22.6 7.0 46 11-56 84-129 (538)
226 PF04281 Tom22: Mitochondrial 54.5 39 0.00084 19.2 5.4 26 1-26 60-86 (137)
227 KOG2563|consensus 53.7 5 0.00011 27.4 0.3 66 6-71 390-459 (480)
228 PF13829 DUF4191: Domain of un 53.4 53 0.0011 20.4 5.2 44 7-53 21-64 (224)
229 KOG0253|consensus 52.6 75 0.0016 22.0 7.6 32 34-66 223-254 (528)
230 KOG1237|consensus 51.8 35 0.00075 24.0 4.0 49 10-58 193-241 (571)
231 KOG3764|consensus 50.5 29 0.00063 23.8 3.3 50 8-57 400-449 (464)
232 TIGR00886 2A0108 nitrite extru 49.8 63 0.0014 20.3 7.3 36 11-46 37-72 (366)
233 KOG3832|consensus 49.7 55 0.0012 20.4 4.2 35 8-43 11-45 (319)
234 KOG3098|consensus 49.0 87 0.0019 21.6 5.5 30 6-35 383-412 (461)
235 PF06800 Sugar_transport: Suga 47.2 74 0.0016 20.3 5.5 33 37-69 218-250 (269)
236 PF07857 DUF1632: CEO family ( 46.4 65 0.0014 20.3 4.3 27 6-32 74-100 (254)
237 PF03219 TLC: TLC ATP/ADP tran 46.1 99 0.0022 21.5 8.1 40 6-45 314-353 (491)
238 PF01350 Flavi_NS4A: Flaviviru 45.9 58 0.0013 18.7 4.0 25 47-71 101-126 (144)
239 TIGR00769 AAA ADP/ATP carrier 44.8 1E+02 0.0022 21.3 7.3 34 2-35 155-189 (472)
240 KOG2325|consensus 44.3 8 0.00017 26.6 0.1 52 2-53 414-466 (488)
241 TIGR00986 3a0801s05tom22 mitoc 42.6 67 0.0015 18.5 4.8 23 2-24 59-82 (145)
242 PF07690 MFS_1: Major Facilita 42.2 83 0.0018 19.4 7.7 43 12-54 33-75 (352)
243 COG2211 MelB Na+/melibiose sym 41.3 1.2E+02 0.0026 21.0 7.1 20 50-69 192-211 (467)
244 PHA02692 hypothetical protein; 40.8 50 0.0011 16.5 3.4 9 54-62 59-67 (70)
245 PF09753 Use1: Membrane fusion 40.1 67 0.0015 19.9 3.7 21 42-62 228-248 (251)
246 PRK10207 dipeptide/tripeptide 39.6 1.2E+02 0.0027 20.7 7.9 57 6-62 410-476 (489)
247 PF12832 MFS_1_like: MFS_1 lik 37.8 56 0.0012 16.3 6.2 27 13-39 37-63 (77)
248 PF13347 MFS_2: MFS/sugar tran 37.8 1.2E+02 0.0026 20.0 5.9 44 13-56 262-305 (428)
249 COG1862 YajC Preprotein transl 35.4 58 0.0013 17.4 2.5 27 52-78 16-42 (97)
250 PF02554 CstA: Carbon starvati 34.4 1.5E+02 0.0032 20.1 4.9 53 25-77 67-123 (376)
251 COG3817 Predicted membrane pro 33.6 1.3E+02 0.0029 19.3 4.5 53 23-76 107-160 (313)
252 PF09911 DUF2140: Uncharacteri 33.4 31 0.00068 20.5 1.5 18 40-57 3-20 (187)
253 PF06785 UPF0242: Uncharacteri 33.1 51 0.0011 21.9 2.4 33 22-54 21-53 (401)
254 PF11085 YqhR: Conserved membr 32.9 1.1E+02 0.0024 18.2 6.8 52 15-66 72-124 (173)
255 PF13334 DUF4094: Domain of un 32.9 70 0.0015 16.9 2.6 29 41-69 3-33 (95)
256 PHA02650 hypothetical protein; 32.7 77 0.0017 16.3 3.5 11 41-51 48-58 (81)
257 COG4698 Uncharacterized protei 32.5 85 0.0018 18.9 3.1 22 40-61 11-32 (197)
258 PHA02844 putative transmembran 32.4 76 0.0016 16.1 3.5 23 41-63 47-70 (75)
259 PRK11652 emrD multidrug resist 32.0 1.4E+02 0.0031 19.1 6.8 34 11-44 43-76 (394)
260 KOG3762|consensus 31.6 1.5E+02 0.0034 21.3 4.6 52 18-69 53-105 (618)
261 PF07672 MFS_Mycoplasma: Mycop 31.5 62 0.0013 20.6 2.6 48 9-56 4-56 (267)
262 PHA03054 IMV membrane protein; 31.4 77 0.0017 15.9 3.5 18 39-56 45-62 (72)
263 PF05978 UNC-93: Ion channel r 31.3 1.1E+02 0.0024 17.6 7.0 26 20-45 46-71 (156)
264 TIGR00711 efflux_EmrB drug res 31.2 1.6E+02 0.0034 19.5 6.8 35 12-46 38-72 (485)
265 PLN02453 complex I subunit 31.0 58 0.0013 17.6 2.0 32 38-69 59-90 (105)
266 PHA02819 hypothetical protein; 29.5 85 0.0018 15.8 3.5 16 40-55 44-59 (71)
267 PF05631 DUF791: Protein of un 29.2 1.8E+02 0.0039 19.5 6.6 44 13-56 71-114 (354)
268 PF05545 FixQ: Cbb3-type cytoc 29.0 67 0.0015 14.4 2.9 11 55-65 24-34 (49)
269 PF15013 CCSMST1: CCSMST1 fami 28.7 92 0.002 15.9 2.7 6 73-78 60-65 (77)
270 PF11337 DUF3139: Protein of u 28.4 92 0.002 15.8 3.0 16 63-78 30-45 (85)
271 PF02487 CLN3: CLN3 protein; 27.9 1.8E+02 0.0038 19.8 4.3 41 24-64 156-197 (402)
272 KOG1237|consensus 27.8 2.3E+02 0.0049 20.2 5.4 32 6-37 489-520 (571)
273 TIGR00896 CynX cyanate transpo 27.6 1.7E+02 0.0036 18.5 7.3 36 10-45 34-69 (355)
274 PF12676 DUF3796: Protein of u 26.9 1.2E+02 0.0026 16.7 6.3 25 3-28 49-74 (118)
275 COG5522 Predicted integral mem 26.2 1.6E+02 0.0035 18.3 3.6 31 34-65 193-223 (236)
276 KOG1726|consensus 25.8 1.7E+02 0.0038 18.2 4.5 15 56-70 69-83 (225)
277 PF15628 RRM_DME: RRM in Demet 25.8 65 0.0014 17.4 1.7 17 65-81 63-79 (103)
278 KOG2881|consensus 25.1 2E+02 0.0043 18.6 7.4 17 62-78 154-171 (294)
279 PF11239 DUF3040: Protein of u 25.1 17 0.00036 18.5 -0.6 20 63-82 4-23 (82)
280 COG5478 Predicted small integr 24.6 48 0.001 19.0 1.1 30 45-75 49-78 (141)
281 COG1966 CstA Carbon starvation 24.4 1.2E+02 0.0027 21.6 3.2 53 25-77 67-123 (575)
282 COG2270 Permeases of the major 24.4 2.5E+02 0.0054 19.5 6.1 28 14-41 291-318 (438)
283 PF02532 PsbI: Photosystem II 24.3 78 0.0017 13.6 3.8 23 46-68 8-30 (36)
284 PRK10263 DNA translocase FtsK; 24.2 2.7E+02 0.006 22.4 5.0 12 33-44 153-164 (1355)
285 TIGR00885 fucP L-fucose:H+ sym 24.0 2.2E+02 0.0048 18.8 7.8 33 12-44 39-71 (410)
286 COG4700 Uncharacterized protei 23.8 58 0.0013 20.1 1.4 27 41-67 28-55 (251)
287 TIGR00739 yajC preprotein tran 23.8 1.2E+02 0.0025 15.6 2.4 8 57-64 15-22 (84)
288 PRK05886 yajC preprotein trans 23.7 1.4E+02 0.003 16.3 2.9 13 59-71 18-30 (109)
289 PRK09546 zntB zinc transporter 23.5 2.1E+02 0.0046 18.4 4.9 11 22-32 266-276 (324)
290 PF10753 DUF2566: Protein of u 23.5 1E+02 0.0022 14.7 3.4 22 43-64 5-26 (55)
291 PF04695 Pex14_N: Peroxisomal 23.4 43 0.00094 18.8 0.8 16 64-79 31-46 (136)
292 PHA02975 hypothetical protein; 23.1 1.2E+02 0.0025 15.2 3.4 10 41-50 43-52 (69)
293 PF11696 DUF3292: Protein of u 23.0 2.7E+02 0.0059 20.4 4.6 25 8-32 125-149 (642)
294 PF09726 Macoilin: Transmembra 22.9 3.2E+02 0.0069 20.2 6.5 16 49-64 81-96 (697)
295 CHL00024 psbI photosystem II p 22.8 85 0.0018 13.5 1.5 22 47-68 9-30 (36)
296 PF11511 RhodobacterPufX: Intr 22.7 1.2E+02 0.0025 15.1 5.7 33 35-67 25-57 (67)
297 COG2274 SunT ABC-type bacterio 22.6 3.2E+02 0.007 20.2 5.6 51 22-73 275-325 (709)
298 COG0598 CorA Mg2+ and Co2+ tra 22.5 2.3E+02 0.0049 18.3 6.1 25 40-64 294-318 (322)
299 PRK10133 L-fucose transporter; 22.4 2.5E+02 0.0054 18.8 8.0 33 12-44 296-328 (438)
300 PF06570 DUF1129: Protein of u 22.2 1.9E+02 0.0041 17.3 5.1 6 62-67 170-175 (206)
301 PF06963 FPN1: Ferroportin1 (F 21.7 2.8E+02 0.006 19.0 8.2 31 10-40 292-322 (432)
302 PF03839 Sec62: Translocation 21.6 2.2E+02 0.0047 17.8 5.2 16 17-32 114-129 (224)
303 KOG4606|consensus 21.2 1.5E+02 0.0033 16.3 2.6 7 63-69 54-60 (126)
304 PTZ00370 STEVOR; Provisional 20.9 2.5E+02 0.0055 18.3 4.6 18 54-71 270-287 (296)
305 KOG3626|consensus 20.8 3.7E+02 0.008 20.1 7.8 25 44-69 325-349 (735)
306 PF05915 DUF872: Eukaryotic pr 20.7 1.7E+02 0.0036 16.1 6.2 64 8-73 41-112 (115)
307 PF06379 RhaT: L-rhamnose-prot 20.6 2.8E+02 0.006 18.6 4.9 32 4-35 89-121 (344)
308 TIGR01478 STEVOR variant surfa 20.3 2.3E+02 0.005 18.5 3.5 15 56-70 276-290 (295)
No 1
>KOG0569|consensus
Probab=99.65 E-value=1.4e-15 Score=99.28 Aligned_cols=78 Identities=31% Similarity=0.447 Sum_probs=74.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhcC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQK 80 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~ 80 (88)
+|+| +..|+.+++++...+|+.++++.+.+|++.+.+|. ..|.+|++.+++..++.++++||||||+.+|+.+.++++
T Consensus 394 aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 394 AELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 7999 99999999999999999999999999999999996 799999999999999999999999999999998887655
No 2
>KOG0254|consensus
Probab=99.40 E-value=2.6e-12 Score=84.63 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=72.4
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHhccCCCCCHHHHHHHHh
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI-YLYIWLPETEGKTLHEIELHFK 78 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~ 78 (88)
++|+| .++|+++.+++..++|+.++++...++.+....+....|.+|++.+.+... +.++++||||++++||+++.+.
T Consensus 420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 47999 999999999999999999999999999988886545688888888888888 8999999999999999999876
Q ss_pred cCc
Q psy7005 79 QKK 81 (88)
Q Consensus 79 ~~~ 81 (88)
+..
T Consensus 500 ~~~ 502 (513)
T KOG0254|consen 500 EGI 502 (513)
T ss_pred cCC
Confidence 554
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.38 E-value=1.3e-14 Score=93.36 Aligned_cols=77 Identities=32% Similarity=0.553 Sum_probs=70.6
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHF 77 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~ 77 (88)
.+|+| +++|+++.+++...+|+++++.++++|++.+..+....++++++++.+..++.++++||||++++||+++.+
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 37999 999999999999999999999999999998887745688999999999999999999999999999998864
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.35 E-value=2.6e-12 Score=84.23 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=62.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------IGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
+|++ ++.|+++.|++...+++++++.++++|++.+. .+....+++++++++++.++ ++++|||+++++
T Consensus 418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~l 496 (502)
T TIGR00887 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSL 496 (502)
T ss_pred hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCH
Confidence 6999 99999999999999999999999999998874 33345788888888887665 467899999999
Q ss_pred HHHHH
Q psy7005 71 HEIEL 75 (88)
Q Consensus 71 ~~~~~ 75 (88)
||+|+
T Consensus 497 eei~~ 501 (502)
T TIGR00887 497 EELSG 501 (502)
T ss_pred HhhhC
Confidence 98864
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.33 E-value=1.5e-11 Score=79.69 Aligned_cols=81 Identities=22% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLH------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEI 73 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 73 (88)
++|++ ++.|++++|+....+++++++.++++|.+. +..++++.++++++.+++..++.+++.||||+++.||+
T Consensus 389 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 468 (479)
T PRK10077 389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468 (479)
T ss_pred hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 36899 999999999999999999999999998655 35677788999999888888888888999999999999
Q ss_pred HHHHhcCc
Q psy7005 74 ELHFKQKK 81 (88)
Q Consensus 74 ~~~~~~~~ 81 (88)
++.++++.
T Consensus 469 ~~~~~~~~ 476 (479)
T PRK10077 469 EALWEPET 476 (479)
T ss_pred HHHHhhcc
Confidence 88886544
No 6
>KOG0252|consensus
Probab=99.21 E-value=2.1e-11 Score=79.40 Aligned_cols=75 Identities=32% Similarity=0.545 Sum_probs=67.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-----RIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL 75 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~ 75 (88)
+|+| +++|+++.|++.+++.+++++..+.+.++.+ ..+.+++++++++++.+..++. +++|||+++++||+++
T Consensus 432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~ 510 (538)
T KOG0252|consen 432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISN 510 (538)
T ss_pred hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcC
Confidence 7999 9999999999999999999999999999999 7888899999999998886655 5689999999999866
Q ss_pred HH
Q psy7005 76 HF 77 (88)
Q Consensus 76 ~~ 77 (88)
+.
T Consensus 511 e~ 512 (538)
T KOG0252|consen 511 EE 512 (538)
T ss_pred hh
Confidence 54
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.85 E-value=1.1e-08 Score=65.58 Aligned_cols=71 Identities=32% Similarity=0.614 Sum_probs=64.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHE 72 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~ 72 (88)
+|++ ++.|++++++......+++++.+.+.+.+.+..+|.+.|+++++++++..+..+++.||+|+++.++
T Consensus 409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 6889 9999999999999999999999999999999889988899999999998888888899999887654
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=98.63 E-value=1.5e-07 Score=61.74 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=55.4
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 71 (88)
.+|++ ++.|++++|+....+++++++.|++.+ + ...++..+++++++..++..+.. +++|||++++++
T Consensus 435 ~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 435 TAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred hcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 36999 999999999999999999999999887 3 34455667888888777776654 578999998764
No 9
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.63 E-value=2e-07 Score=64.38 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=54.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
+|++ ++.|++++|++...+.+++++.|++.+.+.+. +...+++++++..+++.+.. .++|||+++.+
T Consensus 674 aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l 741 (742)
T TIGR01299 674 VELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQVL 741 (742)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence 6899 99999999999999999999999999887764 34457777777776665554 46799998753
No 10
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.53 E-value=3e-07 Score=59.08 Aligned_cols=74 Identities=14% Similarity=-0.074 Sum_probs=64.4
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL 75 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~ 75 (88)
.|.. .+.|+++.|+....+.++..+.+.+.+.+.+..|....+++++....+..+..+..+|++|+++.+|+++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 3567 7889999999999999999999999999999989887888888887787777888899999988887654
No 11
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.49 E-value=7.4e-07 Score=48.42 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=56.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
.|.+ .+.|+++.++....+.++..+.+.+.+.+.+..+|++.+++.+....+..+..++..|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4677 889999999999999999999999999998888998889888888888888777777775
No 12
>KOG0253|consensus
Probab=98.45 E-value=2.4e-07 Score=59.94 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=58.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
.|+| +.+|++|.|.+...+++++++.|++. +....+...+..+|+.+++++.+...++--||||+++
T Consensus 460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred CcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 5999 99999999999999999999999998 4444454568889999999999998888889999864
No 13
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.38 E-value=3.8e-06 Score=53.81 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=58.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++++++....+.++..+.+.+.+.+.+..|||+.|++.+...++..+..++++||+.
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4667 8999999999999999999999999999988899999999988888888888888899864
No 14
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.35 E-value=5e-06 Score=53.78 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=56.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.|++.++..++..+..++.+||++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 4678 88899999999999999999999988888888899999999988888887776777899754
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.33 E-value=2.9e-06 Score=53.12 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=57.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+..++..||++.+
T Consensus 108 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (399)
T TIGR00893 108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175 (399)
T ss_pred HHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc
Confidence 5778 899999999999999999999999999888889999999988888887777777777776543
No 16
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.27 E-value=6e-06 Score=52.10 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=58.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+..++..||++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4677 889999999999999999999999999888889999999988888888877777778887644
No 17
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.25 E-value=2.5e-06 Score=56.20 Aligned_cols=68 Identities=19% Similarity=0.056 Sum_probs=50.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
+|++ ++.|++++|+....+++++.+.+++.+++.+..+ |+.++++....+++..+ ..+++|||++...
T Consensus 368 ~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred HHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 4788 9999999999988899999999999998887654 45555555555555544 4456799976543
No 18
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.23 E-value=1.3e-05 Score=50.63 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=56.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+++||++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 4677 8899999999999999999999999998888889999999888888887777777788864
No 19
>PRK03545 putative arabinose transporter; Provisional
Probab=98.21 E-value=1.3e-05 Score=51.22 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=56.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|++++|+....+.++..+.+.+...+.+..||++.|++.+...++..+..+..+||.+.
T Consensus 123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~ 189 (390)
T PRK03545 123 IRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS 189 (390)
T ss_pred HHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4667 88999999999999999999999999888888999999999998888877777777777543
No 20
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.21 E-value=6.6e-06 Score=54.37 Aligned_cols=62 Identities=19% Similarity=0.079 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
.+.|++++|+......++..+.|.+.+.+.+..+|+|.|++...+.++..+...+++||.++
T Consensus 126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 126 EKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 57899999999999999999999999999999999999999988888888888888888644
No 21
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.19 E-value=1.5e-05 Score=51.75 Aligned_cols=67 Identities=7% Similarity=0.055 Sum_probs=56.6
Q ss_pred Cccc-hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVA-TVAYALAFATAKTFLDLHMRI------GLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|++++|+.. ..+.+++.+.+.+.+.+.+.. ||+..|.+.+.+.++..+..++++||+++.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 5678 899999999997 556789999999999998884 578888888888888888888999988543
No 22
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.18 E-value=5.9e-06 Score=53.66 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|++++|+....+.++..+.|..++.+.+..||...+...+++..+..+..+++.++.+++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 5778 899999999999999999999999999999999998888888888888777776666665544
No 23
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.17 E-value=1.7e-05 Score=50.58 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=56.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+...++..++..+++||++..
T Consensus 117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4677 899999999999998888888888888777788999999999888888888777788887543
No 24
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.17 E-value=1.7e-06 Score=56.37 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=57.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++.+...++..+...+.+||++.+
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA 183 (485)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence 4778 899999999999999999999999999998889999999998888888777777778876543
No 25
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.16 E-value=2e-05 Score=50.67 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=55.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++.+...++..++.....||+++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 4778 89999999999999999999999999999999999999998887777766666666788643
No 26
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.16 E-value=3.2e-05 Score=51.20 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=45.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhchHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-----------------------RIGLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 57 (88)
+|.+ .+.|++++++......++..+.+.+...+.. ..+||+.+.+-+...++ ..+
T Consensus 141 ~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~ 219 (502)
T TIGR00887 141 SEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALY 219 (502)
T ss_pred HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHH
Confidence 6889 9999999999998888888777766654332 13699887555544444 444
Q ss_pred HHHHhccC
Q psy7005 58 LYIWLPET 65 (88)
Q Consensus 58 ~~~~~pet 65 (88)
..+++||+
T Consensus 220 ~~~~lpES 227 (502)
T TIGR00887 220 FRLTIPET 227 (502)
T ss_pred HHHhCCCC
Confidence 55789998
No 27
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.14 E-value=1.6e-05 Score=51.49 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=55.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM------RIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|++++++......++..+.+.+.+.+.+ ..||++.|++.+...++.....++++||++.
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5678 8899999999999888889888888877764 3589999999888888777777788899864
No 28
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.12 E-value=2.2e-05 Score=51.06 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=53.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ .+.|++++++....+.++..+.+.+.+.+.+..+|++.+++.+...++..++..+.+||+
T Consensus 137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4677 889999999999999999999999999888889999999888877766666556667765
No 29
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.05 E-value=3.7e-05 Score=49.97 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=57.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
+++. .+.|++++++.....-+...++..+..++-+.+|||++|+..+....+..+..+..+|
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567 8899999999999999999999999999999999999999999999999999999999
No 30
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.03 E-value=3.9e-05 Score=49.24 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=54.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
.|.+ .+.|.++.++......++..+.+.+...+.+..+|++.+++.++..++..+..++.+||++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4667 78888888888888888888888888888888899999999888888887777777898754
No 31
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.02 E-value=3.8e-05 Score=49.06 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=53.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|++++++......++..+.+.+...+.+..+|++.|++.+....+..+..++.+||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3566 77889999998888888888888888888888899999999888877777777777898654
No 32
>TIGR00895 2A0115 benzoate transport.
Probab=97.98 E-value=1.2e-05 Score=50.70 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=56.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+.....+.++||+..
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 4677 88999999999999999999999999999888899988888877777777777778888743
No 33
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.93 E-value=0.0001 Score=48.16 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=50.8
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccCC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFA-TAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPETE 66 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~ 66 (88)
|.+ .+.|+++.|+......+++.+ .+.+.+.+.+..|++..|++.+..++++.++.. ...+|+|
T Consensus 374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 677 889999999999988888765 689999999999998899888888777766654 3334433
No 34
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.93 E-value=8.1e-05 Score=46.90 Aligned_cols=66 Identities=17% Similarity=0.044 Sum_probs=54.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--------LHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|+.+.++......++..+.+.+...+....+ |+..|++.++...+..+..++..||++.
T Consensus 109 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 109 LEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred HHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 5788 8999999999999999999999999888888888 9999988888777766665556788643
No 35
>KOG2532|consensus
Probab=97.92 E-value=0.00026 Score=47.03 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC----CCCCHHHHHHHHh
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET----EGKTLHEIELHFK 78 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet----~~~~~~~~~~~~~ 78 (88)
...|++..++.++...+++.+.-.+.+.+-+. +||+.+|+++++..++..+..+++.-|+ +..+.+|.+...+
T Consensus 159 ~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~ 236 (466)
T KOG2532|consen 159 PNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEK 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHh
Confidence 67899999999999999999999999999988 9999999999999998888766655543 3334555555443
No 36
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.92 E-value=0.00014 Score=46.40 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=54.5
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+++||+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 133 TQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred HhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 556 7889999999988888899999999998888889999999998888887777777788753
No 37
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.91 E-value=0.00011 Score=48.50 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=47.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---------RIGLHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
+|.+ .+.|+++.|+....+.++..+.+.+.|.+.. ..||++.|++.+++.++..+..+++.++
T Consensus 149 ~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 149 STMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4678 8899999999988888888877777765533 1489999999988888777666555444
No 38
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.88 E-value=7.1e-05 Score=47.89 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=53.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+.+.++..+...+++||+.
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4778 8899999999999888888888888777777788998888888777777666667788864
No 39
>KOG0255|consensus
Probab=97.88 E-value=0.00018 Score=47.77 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=53.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 71 (88)
+|++ +.+|..+.+.+...+.+++.+.+++...... ......+.+++....+.......++|||+++++.
T Consensus 432 ~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~ 501 (521)
T KOG0255|consen 432 AELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP 501 (521)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence 6899 9999999999999999999999988654433 3323333336667777777777899999999874
No 40
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.88 E-value=0.00017 Score=47.19 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=54.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ .+.|++++++......++..+.+.+.+.+.+. .+|++.|++.+...++..+..+.+.+|.
T Consensus 157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 5778 89999999999999999999999999988888 4999999998888877776666666654
No 41
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.88 E-value=0.0002 Score=44.71 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=49.4
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI 60 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (88)
+|++ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5788 8899999999999999999999999999988899998888877766665554433
No 42
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.88 E-value=8.1e-05 Score=48.43 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=52.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++++++......++..+.+.+...... ..+|++.|++.+..+++..+..++++||+.
T Consensus 144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4678 8899999999988888888888877665444 468999999988888887777777788764
No 43
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.85 E-value=1.4e-05 Score=49.69 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=54.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..++...++++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 111 ADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred cccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence 4677 789999999999999999999999999888888999999999999998877655566655433
No 44
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.84 E-value=3.8e-05 Score=49.96 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALA-FATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.|.+ .+.|+++.|+....+++++ .+.|.+.+.+.+..|+.+.+.+..+..+++.+...+.+||.|
T Consensus 371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3677 8899999999998888875 578999999999889888998888888888888888899865
No 45
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.77 E-value=0.0003 Score=45.44 Aligned_cols=64 Identities=20% Similarity=0.023 Sum_probs=53.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.|.+ .+.|+++.|+......++..+.+.+.+.+. ..+|++.+++.+...++..+....++||.+
T Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4667 889999999999999999999999999888 679999998888777777666666677753
No 46
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.75 E-value=0.00012 Score=47.05 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=48.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTF---LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++++++......++..+.+.+. .......+|++.+++.+...++. +...+++||+.
T Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~ 220 (481)
T TIGR00879 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP 220 (481)
T ss_pred HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence 5788 89999999999998888888888877 44445678998888855544444 44556788874
No 47
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.73 E-value=0.00026 Score=47.01 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=52.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++....+.++..+.+.+...+.+ ..||+..|++.+....+..+..+ ++||+.
T Consensus 133 ~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 133 TDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 4778 8999999999999999999999988888888 47999999998887777655443 478874
No 48
>PRK10504 putative transporter; Provisional
Probab=97.71 E-value=0.00033 Score=45.82 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=54.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++....+.+..+......|+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4667 8889999999999889999999999999988899999999888877777777766677654
No 49
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.71 E-value=0.00043 Score=44.27 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=51.0
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
|.+ .+.|+.+.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...++.||++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 189 (394)
T PRK11652 123 DLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA 189 (394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence 456 677888888887777788888888888888888999999888777776666666778887543
No 50
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.66 E-value=0.00016 Score=46.55 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=47.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.... .+...+.....||++
T Consensus 132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP-VLLVIYIRARAPESK 196 (426)
T ss_pred HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH-HHHHHHHHHHCCCCh
Confidence 5778 899999999999988899999998888888888999888764333 222233333456653
No 51
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.66 E-value=4.4e-05 Score=50.01 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=54.2
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 5 I-PKGRGIASGLVATVAYALAFATAKTF--LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 5 ~-~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
| .+.|++..|+....+++++.+.+.+. ..+..+.+|+..|++=+++.++..++.++.++||.
T Consensus 146 fsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 146 FSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred cCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6 78899999999999999999999999 78888889999999888888888888887776653
No 52
>PRK12382 putative transporter; Provisional
Probab=97.65 E-value=0.00045 Score=44.15 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=52.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
.|.+ .+.|+++.|+......++..+.+.+.+.+.+..||++.+.+.+...++..+..++..
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 3567 889999999999999999999999999999999999899888888877777665543
No 53
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.64 E-value=0.00069 Score=44.28 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=46.3
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|.+ .+.|++++++......++..+.+.+...+. ...+|++.|++.+...++..+ ..+++||+.
T Consensus 145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~ 218 (479)
T PRK10077 145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETP 218 (479)
T ss_pred HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence 36889 999999999988777777666654433222 346899998887776666544 456789975
No 54
>KOG0255|consensus
Probab=97.64 E-value=0.00041 Score=46.15 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|++ ++.|+.+..+ ....|.++.+.+....++.. +||+.+++.+....+..++ ++..||++
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 46999 9999999999 99999999999999888877 8999999888888877666 55566874
No 55
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.64 E-value=0.00083 Score=43.24 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
.+.|++..++....+.++..+.|.+.+.+.+..| +...+.+.+..+++..+..+.+.|||+++..
T Consensus 324 ~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 324 PAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4678999999999999999999999999999876 5556677777777777777889999987653
No 56
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.64 E-value=0.00046 Score=43.74 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=48.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--LHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
.|.+ .+.|+++.++......++..+.+.+.+.+.+..+ |++.+.+.+...++ .++....+||++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~ 193 (405)
T TIGR00891 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAED 193 (405)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCChh
Confidence 4677 8899999999999999999999998888877766 88877765444433 3444556788653
No 57
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.63 E-value=2e-05 Score=49.32 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=51.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATA-KTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++......++..+.+ .....+....+|++.+++.+....+..+..+++.||++
T Consensus 109 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 5677 88899999999999999998888 45555666778998888888777777777777777764
No 58
>PRK10054 putative transporter; Provisional
Probab=97.63 E-value=0.00047 Score=44.45 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=52.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.. .+|+..|++.+....+..+...+++||++
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4667 7789999999999999999999999887764 68888898888777777666666677664
No 59
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.61 E-value=0.00037 Score=45.76 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------HhchHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHM------------RIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
.|.+ .+.|+++.|+....+++ +.++.+.+.+.+.+ ..+|+..|+++.++.+++.+...
T Consensus 375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 3778 88999999999999997 66899999999988 56788888888777777655544
No 60
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.60 E-value=0.00025 Score=44.45 Aligned_cols=58 Identities=10% Similarity=0.222 Sum_probs=49.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 59 (88)
+|.+ .+.|++++|+......+++.+.+.+.+.+.+..| +.+.+++.+...+++.+..+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 5778 8999999999999999999999999999999888 88788877777776665544
No 61
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.59 E-value=0.00087 Score=42.90 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
|.+ .+.|+++.|+......++..+.+.+.+.+.+..|+++.+++.+...+++.+..++ +++.++
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAP 393 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccc
Confidence 556 7889999999999999999999999999999889998888888877777665554 555444
No 62
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.56 E-value=0.00026 Score=47.38 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=46.5
Q ss_pred Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (88)
+|+| ++ .|.++.++.++..++++++.|.+.+.+.+..||++.|.+.+...+++.+.
T Consensus 126 ~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 5788 65 79999999999999999999999999999999998888766555444443
No 63
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.55 E-value=0.00052 Score=43.16 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=45.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchHHHH-HHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------IGLHGVF-FLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ .+.|+++.++....+.++..+.+.+.+.+... .+|++.+ +..+....+..+..+.+.+|+
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 5677 88999999999888888888888887776653 3788887 444555555555555556654
No 64
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.54 E-value=0.0015 Score=43.54 Aligned_cols=77 Identities=6% Similarity=-0.000 Sum_probs=54.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------HhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH-----M-------------RIGLHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
++.| .+.|+++.|+....+.++..+.+++.|.+. . ..+|+.+.++++...++..++.++++
T Consensus 153 s~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~ 232 (462)
T PRK15034 153 SFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM 232 (462)
T ss_pred HHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567 788999999998888888888888777644 2 23466677888888888888888777
Q ss_pred ccCC--CCCHHHHHHHHh
Q psy7005 63 PETE--GKTLHEIELHFK 78 (88)
Q Consensus 63 pet~--~~~~~~~~~~~~ 78 (88)
++.+ ..+.++.-+.++
T Consensus 233 ~~~~~~~~~~~~~~~vlk 250 (462)
T PRK15034 233 NDIASSRASIADQLPVLQ 250 (462)
T ss_pred CCccccccCHHHHHHHhC
Confidence 7754 223444433333
No 65
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.54 E-value=0.00033 Score=44.99 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=49.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|++ ++.|+++.|+....+++++...+.+.+.+.. +....|.+++...++..+... ..++.
T Consensus 306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~-~~~~~ 367 (368)
T TIGR00903 306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL-LLPND 367 (368)
T ss_pred HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 6899 9999999999999999999999999987774 656688888888887777653 34553
No 66
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.53 E-value=0.00068 Score=44.39 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=46.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTF-LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.|.+ .+.|++++|+......+++.+.+.+. ..+....+|++.|++.+..+++..++..+++||+.
T Consensus 146 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 146 VHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 3567 88999999998777777664444332 22333458999999888888887777778888864
No 67
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.50 E-value=0.001 Score=41.92 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 13 SGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
.++....+.++..+.+.+.+.+.+..+|++.+++.+...++..+..++++||.+.
T Consensus 127 ~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 127 SSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4555566677888888888888888899999999988888887777777888643
No 68
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.49 E-value=0.00061 Score=44.75 Aligned_cols=64 Identities=22% Similarity=0.140 Sum_probs=48.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.|.+ .+.|+++.++....+.++..+.+.+.+.+.+..+|++.+++.... ++..++....+||++
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFALWLRKNLPEAE 198 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHhCCCch
Confidence 4677 889999999999999999999999999988889999887764333 333333445567653
No 69
>KOG1330|consensus
Probab=97.48 E-value=2.6e-06 Score=56.12 Aligned_cols=75 Identities=9% Similarity=-0.057 Sum_probs=60.8
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL 75 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~ 75 (88)
|+|+| ...|++++++.+....+++.++-....++.+..+ |||.++.-++..++..++..++++|.+....++.+.
T Consensus 146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 58999 9999999999999888887776666555555555 899999999999999999999999988665554433
No 70
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.47 E-value=0.00099 Score=43.80 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+.|+++.++....+.++..+.+.+.+.+.+..||++.|++.+++.++..+..++..|
T Consensus 138 ~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 138 YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5679999999999999999999999999999999999999998887776665554444
No 71
>PRK11043 putative transporter; Provisional
Probab=97.45 E-value=0.0019 Score=41.37 Aligned_cols=63 Identities=6% Similarity=-0.075 Sum_probs=47.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ .+.|....+.......++..+.+.+.+.+.+..+|++.+++.+....+..+..++ ++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (401)
T PRK11043 120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKPS 183 (401)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 4566 6777777888777777888888988888888899999888888777776655544 4443
No 72
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.43 E-value=8.8e-05 Score=48.68 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=45.4
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 57 (88)
.|.+ .+.|++++|+......++..+.+.+.+.+.+.. +|++.|++.++..+++.++
T Consensus 359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 3567 788999999999999999999999999888877 4777777777666665554
No 73
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.43 E-value=0.00041 Score=45.10 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=39.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHG-VFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
+|+| ++.|++++|++++.+++ .+...+++.. +.+..|+.. .+++.+...++..+..+ + .++++++.
T Consensus 362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~-~-l~~~~~~~ 430 (432)
T PRK10406 362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL-M-LHRKGKGM 430 (432)
T ss_pred HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH-H-hhhccccc
Confidence 5899 99999999999988775 3445666555 445445333 33333444444444333 3 45566654
No 74
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.39 E-value=0.0005 Score=43.00 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=46.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
+|.+ .+.|+++.|+......++..+.+.+.+.+.+..||++.+.+.+.+.+++
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4778 8999999999999999999999999999999999988887776666554
No 75
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.37 E-value=0.0015 Score=42.02 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=50.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|+++.++....+.++..+.+.+...+.+. .||+..|++.+....+.... .+++||++.
T Consensus 120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred HHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 4677 78899999999988888888888888877775 49999998888776665443 456787643
No 76
>PRK09952 shikimate transporter; Provisional
Probab=97.37 E-value=0.0014 Score=42.80 Aligned_cols=64 Identities=13% Similarity=0.028 Sum_probs=46.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRI--GLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|++ ++.|+++.++....+. +++.+.|++.+.+.+.. +|...+.+.+.+.+++.+.. +.++||+
T Consensus 369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 5889 9999999999877765 78889999999988754 35555555555555554444 4567754
No 77
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.36 E-value=0.0011 Score=44.00 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=42.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++..++......++..+.+.+.+.+. ...|||+.|++.+...++ .++....+||+.
T Consensus 144 ~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 144 AEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 5788 899999988887666566655554443332 257999999886654444 334455788863
No 78
>PRK03545 putative arabinose transporter; Provisional
Probab=97.36 E-value=0.0021 Score=41.16 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
++.|++++|+......++..+++.+.+.+.+..|++..+++.+.+..++.++.+....
T Consensus 324 ~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 324 PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 4578999999999999999999999999999999998998888888888887776653
No 79
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.34 E-value=0.00083 Score=41.53 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=50.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
.|.. .+.|++.+|+....+.++..+.+.+.+.+.+..++++.+.+.+...++..+..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 4677 799999999999999999999999999999888998888888888887766543
No 80
>KOG2533|consensus
Probab=97.33 E-value=0.00012 Score=49.03 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=56.1
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 4 II-PKGRGIASGLVATVAYALAFATAKTFLDLH------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 4 ~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
-| .+.|++.+|+..+.+.+++++++++...+. ...||+|.|.+-++++++..+++++++|+...
T Consensus 162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 46 788999999999999999999999988764 34689999999999999999999999999754
No 81
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.31 E-value=0.0017 Score=40.59 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
++.|+++.++......++..+.+.+...+.+..+|++.+++.+....+..+..++++++.
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 121 PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 456999999988888788777777777777778999999998888888877777666554
No 82
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.30 E-value=0.0011 Score=44.15 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=40.7
Q ss_pred Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy7005 2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGS 49 (88)
Q Consensus 2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (88)
+|.| .+ .|+.+.++.+...++++.+.+.+.|.+.++.||++.|++.++
T Consensus 131 ~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 131 SKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 5677 65 457789999999999999999999999999999988877543
No 83
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.29 E-value=0.0041 Score=40.19 Aligned_cols=64 Identities=11% Similarity=-0.016 Sum_probs=50.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.|.. .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+ ..+.+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 200 (417)
T PRK10489 136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALP 200 (417)
T ss_pred hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 4677 888999999999999999999999998888888998888776666555544 345677754
No 84
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0017 Score=42.63 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=58.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG---LHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
++-| .+.++.++|+.. .++++..+..++.|.+....+ |+.+..++....++..+..++.+.+...
T Consensus 130 s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 130 SFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred cccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 5668 899999999999 999999999999999999999 9999999999999988888887766543
No 85
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.27 E-value=0.0018 Score=39.98 Aligned_cols=58 Identities=21% Similarity=0.145 Sum_probs=49.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677 789999999999999999999999999999888899888887777766655543
No 86
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.27 E-value=0.0012 Score=42.52 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=46.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGV-FFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet 65 (88)
.|.+ .+.|++++|+....+++++.+.|.+.+.+.+..|.... +++.+..+........++.|++
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 5778 89999999999999999999999999999888875432 3333333444333333445654
No 87
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.27 E-value=0.00095 Score=43.17 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=49.2
Q ss_pred Cccc-hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGL-VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ ++.|++..+. ......+++.+.+...+.+.+..||+..|.+.+.+.++..++.++.+++.
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556 7778877655 44567788889999999999999999899888888877777666666553
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.22 E-value=0.0056 Score=39.39 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 14 GLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
++....+.++..+.+.+...+.+..||+..|++.+...++..+..++++||.+.
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 566667778889999999888888999999988888888887777788898754
No 89
>TIGR00898 2A0119 cation transport protein.
Probab=97.19 E-value=0.0042 Score=41.03 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=44.4
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|.+ .+.|+.+.++......++..+.+.+...+. +|++.+++.+...++..+.. +++||+.
T Consensus 205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~esp 267 (505)
T TIGR00898 205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPESP 267 (505)
T ss_pred hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence 46888 899999999986666666666665543332 38888888887777766655 6789863
No 90
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.18 E-value=0.00041 Score=45.56 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=47.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHhcc
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGL-IYLYIWLPE 64 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pe 64 (88)
+|.+ .+.|++++|+....+.+++.+.+.+.+.+.+..|++..+.+.+..+.+.. +...+..|+
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS 456 (496)
T ss_pred HhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 4677 88999999999999999999999999999999898877666554443333 334344454
No 91
>PRK15075 citrate-proton symporter; Provisional
Probab=97.17 E-value=0.0013 Score=42.86 Aligned_cols=70 Identities=16% Similarity=0.006 Sum_probs=45.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 71 (88)
+|.+ .+.|+++.++....+.. ++.+.|.+.+.+.+..|+.+...++.....+......+.+.+-++..++
T Consensus 357 ~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK15075 357 TEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQ 428 (434)
T ss_pred HHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 5788 89999999998776665 4888899999888888854332222222333333344556666655543
No 92
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.16 E-value=0.0019 Score=41.40 Aligned_cols=59 Identities=14% Similarity=-0.039 Sum_probs=43.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYI 60 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (88)
+|.+ ++.|+++.|+....+.+++.+.+.+.+.+.+..+ +...++..+...+...+..+.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 334 PLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4678 8899999999999999999999999999887643 344454555455554444443
No 93
>KOG2816|consensus
Probab=97.14 E-value=0.005 Score=41.09 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 71 (88)
++|+. .+.|..+.++...+-+.+..+++.......+..|...++++-++..++..++..+++||+...+.+
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 46788 889999999999999999999999999998888888889999999999999999999999766544
No 94
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.14 E-value=0.0026 Score=46.01 Aligned_cols=64 Identities=8% Similarity=-0.132 Sum_probs=50.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.+++ .+.|++++|+..+...++..+++.+.+.+....+|++.| +......+......+.+|+++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 5778 889999999999999999999999999999988998777 444444444455556677764
No 95
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.10 E-value=0.0043 Score=43.60 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=43.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-------------IGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|++ .+.|++.+++......++..+.+.+...+... .+|++.+++.+... +..++..+++||+
T Consensus 281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~-ll~ll~~~~lPES 357 (742)
T TIGR01299 281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPES 357 (742)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH-HHHHHHHHHcCCC
Confidence 5788 89999999998888777777777655444432 25776666655544 4445566789998
No 96
>PRK15075 citrate-proton symporter; Provisional
Probab=97.04 E-value=0.0044 Score=40.40 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=34.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhchHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDL--------HMRIGLHGVFFLYG 48 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 48 (88)
+|.+ .+.|++++++....++++..+.+.+.+.+ .+..||++.|++..
T Consensus 143 ~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 143 AEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 6888 99999999998887777766655554443 34679998887643
No 97
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.00 E-value=0.0069 Score=38.97 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
|++++.|++++++......++..+.+.+.+.+.+..+|+..+++.+...+++.+. .+++||+
T Consensus 332 ~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 393 (393)
T PRK15011 332 DLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC-LLRIKDV 393 (393)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhhcCC
Confidence 4553358999999988889999999999999999889887777766666665444 4456664
No 98
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.00 E-value=0.0097 Score=38.48 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=49.3
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHM-------RIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|+. .+.|++..++......++..+.+.+.+++.. ..+|++.+.+.++...+..+..+++.||++
T Consensus 125 ~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 125 PAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4554 5789999998888888888777776666554 346888888888888888777777888865
No 99
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.96 E-value=0.015 Score=37.29 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
.+.|+.+.+.......++..+.+.....+.+..||+..|++.+....+..+..++..|++
T Consensus 128 ~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 128 GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444555555555666677776666788889999999999888877766665554543
No 100
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.95 E-value=0.0087 Score=38.66 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=46.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|++ .+.|+++.|+......++..++|.+.+.+.+.. |+..+.+.+....+. .+..+++||.+
T Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 5788 899999999999999999999999998887753 555555544443333 34456788764
No 101
>PRK03699 putative transporter; Provisional
Probab=96.95 E-value=0.01 Score=38.12 Aligned_cols=57 Identities=16% Similarity=-0.006 Sum_probs=43.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
+|.+ .+.|+.+.++......+++.+.+.+.+.+.. ..+|++.+.+.+...++..++.
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 5677 7889999988877777788888888777654 4689999888877766655443
No 102
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.94 E-value=0.0017 Score=44.48 Aligned_cols=65 Identities=12% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPET 65 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet 65 (88)
++|+. .+.|..+.++.....-...+..+.....+...-+|||.|+++.++..++++..+ ++.|.+
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46888 899988887776554444444555544444456899999999888887776543 344443
No 103
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.93 E-value=0.0046 Score=40.28 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=41.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+...++.......+..+.+.+.+.+. ...|||+.|++-+...++. .+....+||++
T Consensus 150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~ 222 (432)
T PRK10406 150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS 222 (432)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 5778 889999888876665555555555443332 2569998888766555544 33445577764
No 104
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.92 E-value=0.0088 Score=39.13 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHH------HHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRIGLHG------VFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.+.. .+.|++++++...+.. ++..++.++.+.+.+..|.+. .+.+.++...+..+..+++.+|++
T Consensus 327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3556 7899999999887654 788888999999999877553 344455555555556666666654
No 105
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.88 E-value=0.013 Score=37.86 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=47.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
|+.++.|+++.|+......+++.+.|.+.+.+.+..|+...+++.+++.++..+...
T Consensus 342 ~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 342 TLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred hhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 333557999999999999999999999999999998988888888877766665544
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.88 E-value=0.0041 Score=39.73 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
.+.|++.+++......++..+.+.+.+.+.+..|+++.|++.++..++..++.++..++
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 342 NQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred cccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999998999989999888888887776655443
No 107
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.83 E-value=0.0089 Score=40.02 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=45.2
Q ss_pred Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHHhccC
Q psy7005 2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGL---IYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~pet 65 (88)
+|.| .+ .|..+.++.+....+++.+.+.+.+.+.+..||++.|.+.++...++. ++....++|.
T Consensus 138 ~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 138 STCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred HHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 3555 33 244578888899999999999999999999999998888765444433 2333445553
No 108
>KOG3764|consensus
Probab=96.80 E-value=0.00073 Score=44.42 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=59.7
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
++.| .+.|++++|+.-..-.++..+.|.+.+.+++..|...+|.+.++++.+....-.+.++.++..+
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 4556 5678999999999999999999999999999999999999999999999998888777776655
No 109
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.79 E-value=0.011 Score=37.23 Aligned_cols=64 Identities=25% Similarity=0.213 Sum_probs=44.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|+...++......++..+.+.+.+.+. +..+|++.+.+.+....+... .....||++
T Consensus 122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (394)
T TIGR00883 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETP 194 (394)
T ss_pred hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Confidence 5778 889999999998888888888887765543 346788887776555544433 334566654
No 110
>KOG0254|consensus
Probab=96.79 E-value=0.0093 Score=39.90 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=48.1
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI--GLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|+- .+.|+.-.++...... .+.+..+.......+. +||..+.+..+.+++..+. .+++||+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 47888 9999999988877776 4444446666666554 8997888877788777777 88899873
No 111
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.78 E-value=0.0077 Score=39.70 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=54.0
Q ss_pred Cccc-hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLV-ATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
++.+ .+..++...++ .....++..+.+...+.+.++.|.+.+|++++.+.+...++..+.+++.+..
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 3557 78888888886 4666788889999999999999988899999999888888888888776653
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.76 E-value=0.0063 Score=40.45 Aligned_cols=49 Identities=20% Similarity=0.071 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.|+++.++.....++++.+++.+.+.+.+..+|++.|.+.+...++..+
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999888999888887655554433
No 113
>KOG2504|consensus
Probab=96.63 E-value=0.0072 Score=40.78 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+-|+.+.|++....-++.++.+.+.-++.+..||++.+++++.+.....+.....-|
T Consensus 165 ~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 165 EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7889999999999999999999999999999999999999999999888887777777
No 114
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.61 E-value=0.011 Score=38.54 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=51.2
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
+|+. .+.|.+..++......+++.+...+.+.+.+..+ |++..+++++...+..+...+..+|
T Consensus 129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 5676 5789999999999999999888888888775544 5667778888888888888888888
No 115
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.57 E-value=0.018 Score=41.66 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc-hHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR--------IG-LHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|++ .+.|++++|+......++..+++.+.+.+... .+ +.+.+.+......+..+...+.+||+.
T Consensus 128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 128 IPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 36788 88999999999999999999999998888765 22 333333333333333334445567764
No 116
>PRK12382 putative transporter; Provisional
Probab=96.52 E-value=0.015 Score=37.17 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=38.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSC 50 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (88)
.|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.+.+....
T Consensus 138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3567 788999999988888888888888888888888988665554433
No 117
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.52 E-value=0.027 Score=35.52 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005 3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
|..++.|+++.++......++..+.+.+.+.+.+..|++..+++.+...+++.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 315 DLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 44433466999999999999999999999999998898888888777776666554
No 118
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.43 E-value=0.015 Score=36.58 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=45.3
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hchHHHHHHHHHHHHHHHH-HHHHHhcc
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------------IGLHGVFFLYGSCSVFGLI-YLYIWLPE 64 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~pe 64 (88)
++. .+.+++.+++....+.+++++.|.+...+... ..|+++|++.+....+..+ +.+.-+||
T Consensus 37 ~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~ 116 (310)
T TIGR01272 37 ILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPE 116 (310)
T ss_pred HHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 344 56788999999999999999999999877632 3577788766655444443 33444566
Q ss_pred CCC
Q psy7005 65 TEG 67 (88)
Q Consensus 65 t~~ 67 (88)
.+.
T Consensus 117 ~~~ 119 (310)
T TIGR01272 117 LQE 119 (310)
T ss_pred CCc
Confidence 544
No 119
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.43 E-value=0.019 Score=37.07 Aligned_cols=62 Identities=8% Similarity=-0.160 Sum_probs=39.0
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 3 NII-PKGRGIASGLVATVAYALA-FATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
+.+ .+.|++++|+......++. .+.+.+...+.+..|++..+|.......+..+...++.++
T Consensus 132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456 7889999999998888775 4566666666666776544444443333333334444444
No 120
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.39 E-value=0.057 Score=34.84 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFG 54 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 54 (88)
++.|++++++......++..+.+.+.|.+.+.. +|++.+.+++...++.
T Consensus 127 ~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 127 QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456899999998888888999999988888775 7988777766655444
No 121
>PRK09952 shikimate transporter; Provisional
Probab=96.36 E-value=0.018 Score=37.68 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=41.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
+|.+ .+.|++..+.......++..+...+...+. ...+||+.|++.+...++ ..+.....||++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 5778 888998888877766666666655544433 246899888776655443 233344567764
No 122
>PTZ00207 hypothetical protein; Provisional
Probab=96.30 E-value=0.13 Score=35.57 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++.|+++.|+......+++.+.+.+...+.. .+|++.+++.+...++..+..+.++++..
T Consensus 150 p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 150 PSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 6789999999999999999876666665554 35777888888888887777777666653
No 123
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.29 E-value=0.045 Score=35.77 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=44.5
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hchHHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR--------------------------IGLHGVFFLYGSCSVFGL 55 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 55 (88)
++. .+.|++..++....+.+++.+.+.+.+.+... .+|+++|.+.+...++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 121 VMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 57789999999999999999999888876432 358888888877666654
Q ss_pred HHHH-HHhcc
Q psy7005 56 IYLY-IWLPE 64 (88)
Q Consensus 56 ~~~~-~~~pe 64 (88)
+... .-.||
T Consensus 201 ~~~~~~~~p~ 210 (410)
T TIGR00885 201 LLIMLTKMPA 210 (410)
T ss_pred HHHHHhcCCC
Confidence 4433 22555
No 124
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.21 E-value=0.032 Score=37.26 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
++. .+.+++.+++.+....++..+.+.+.+.+.+..||+..|.+.+.+.+.+.+...+ ++++
T Consensus 343 ~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 343 TLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 445 6678888999999999998889889999999999988787777777777665554 4554
No 125
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.16 E-value=0.045 Score=37.08 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=45.2
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH--HHHHHHHHHHHHHHhccC
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLY--GSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pet 65 (88)
..+ .+.|+++.|+......++.++.+.+.+. ...+||++...++ +..+.....+..+++|..
T Consensus 141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 457 8899999999999999999999999998 6678998755443 222333333445677743
No 126
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.15 E-value=0.0071 Score=39.29 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=40.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGS 49 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (88)
.|.+ ++.|+++.|+....+++++++.|.+.+.+.+..| |.+.+++.+.
T Consensus 359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred ccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 4678 8999999999999999999999999999888774 7766665543
No 127
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.11 E-value=0.026 Score=37.90 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=52.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
+|+. ....+...|+...++...++++|.+++.+.+..| .|+.+.......+++.++. ..++..|++.
T Consensus 406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 4566 6677889999999999999999999999998886 5667766666666666655 5577666543
No 128
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.11 E-value=0.11 Score=33.65 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
+.++...|+......++..+.+.+.+.+.+..|+
T Consensus 350 ~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 350 RAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578889999999999999999999998877664
No 129
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.05 E-value=0.06 Score=37.31 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=46.4
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHHHHHHHHHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI----------------------GLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 57 (88)
+.|.+ .+.|+...|+......++..+++.+.+.+.+.. .|+..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788 899999999999999999988888887766532 1444566666666665543
Q ss_pred HHHHhccCC
Q psy7005 58 LYIWLPETE 66 (88)
Q Consensus 58 ~~~~~pet~ 66 (88)
++++|++.
T Consensus 277 -l~~~p~~l 284 (633)
T TIGR00805 277 -FFFFPKAL 284 (633)
T ss_pred -HHhCcccc
Confidence 45566653
No 130
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.04 E-value=0.03 Score=35.87 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=41.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
.|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+...++.
T Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG 191 (399)
T ss_pred HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3667 7889999999888888888888888888888889987776655544433
No 131
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.02 E-value=0.034 Score=35.63 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
.|+.+.+.....+.++..+.+.+.+.+.+..||+..+++.+....+..+ ..+..||.
T Consensus 125 ~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 125 QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence 4666777788888899999999999999999999888776654444333 33445664
No 132
>PRK11462 putative transporter; Provisional
Probab=96.00 E-value=0.12 Score=34.36 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=44.3
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|+- .+.|++..++-...+.++..+.+.+.+++....| |.....+++.+.+++...++...+|.
T Consensus 135 ~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 135 GVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 3554 7899999999999999988888777766665543 44455566666556555555555654
No 133
>PRK09669 putative symporter YagG; Provisional
Probab=95.93 E-value=0.09 Score=34.48 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=43.1
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|+. .+.|.+..++......++..+.+.+.+++...+ +|+..+.+++.+..+.....++..+|.
T Consensus 135 ~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 135 GAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 4555 578999889888888888888877665555443 455566666666666655555555554
No 134
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.90 E-value=0.0035 Score=41.27 Aligned_cols=64 Identities=9% Similarity=-0.055 Sum_probs=46.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI---GLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.+ .+.|++++|+......++..+.+.+...+.... +|+..+.+.+...++..+..+++.++.
T Consensus 148 ~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~ 215 (467)
T PRK09556 148 TRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDS 215 (467)
T ss_pred HHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4677 788999999998888888888888776665543 477777776776666655555555543
No 135
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.87 E-value=0.061 Score=34.51 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSC 50 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (88)
+.|++..|.....+.++..+.+.+...+.+..||+..+++.+..
T Consensus 124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 45677888888888899999999999999999999888776554
No 136
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.85 E-value=0.17 Score=31.93 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--LHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++.|+++.++......++..+.+.+.+.+.+..+ |++.+.+.+....+.. ..++|+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---~~~~~~~~ 176 (355)
T TIGR00896 117 PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---LAWIPQVR 176 (355)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHhhhhc
Confidence 4568999999998888999988888887776643 7777766655443332 23455544
No 137
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.74 E-value=0.0076 Score=37.75 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=36.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGV 43 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (88)
+|.+ .+.|+++.|+....+.++..+.+.+.+.+.+..||++.
T Consensus 336 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 336 SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 4677 88999999999999999999999999999998887643
No 138
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.72 E-value=0.023 Score=36.07 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=37.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGV 43 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 43 (88)
+|.+ .+.|++++|+....+.++..+.+.+.+.+.+..| +...
T Consensus 354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 5778 8999999999999999999999999999999888 5433
No 139
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.61 E-value=0.13 Score=33.08 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
+.|++.+++......++..+.+.+.+.+.+..|+...|.+.+.+.+++..
T Consensus 336 ~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 336 DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998987777766555555433
No 140
>KOG2615|consensus
Probab=95.58 E-value=0.0077 Score=39.66 Aligned_cols=66 Identities=18% Similarity=0.050 Sum_probs=44.0
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHH--HHHHHHHH-HHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFL--YGSCSVFG-LIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~~~~~pet~ 66 (88)
++|++ .+.|+.+++.......++-+++|.+.+++.. ..|-.+.++. ++.+.... ..+..+++|||-
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 47899 9999999999999888999999999888776 3332212211 11111222 344557899993
No 141
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.57 E-value=0.14 Score=32.85 Aligned_cols=56 Identities=11% Similarity=-0.034 Sum_probs=40.5
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
|.. .+.++...+.......++..+.|.+.+.+.+..++.+.|.+.+.+..+..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 444 44555566666667788999999999999999898878877766666554433
No 142
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.34 E-value=0.13 Score=34.41 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=46.0
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
+.- .+.|++.+|+......+++.+.+.+........++.+.+...+...++..+..++..|
T Consensus 408 ~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 408 KIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455 7889999999999999999998888776666667777777777666666666555444
No 143
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.28 E-value=0.21 Score=34.03 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccCCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPETEG 67 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~ 67 (88)
.+.|++.+|+..+....+.-++..+.+.+.+..|.+..+.+-++..++..+... ..+++.+.
T Consensus 338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 678999999999999999999999999999999988777665555444444332 33455443
No 144
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.25 E-value=0.076 Score=35.36 Aligned_cols=54 Identities=6% Similarity=-0.061 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.+++......++..+.+.+.+.+.+..+|+..+++.+....+. .+..+++||.+
T Consensus 159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 3445555555788888888888888889998888888877777 44567788865
No 145
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.12 E-value=0.11 Score=33.79 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
|+..++.......++..+.+.+.+.+.+ .+|++.|++.+...++..+..++..||.
T Consensus 139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 139 SGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred ccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 4445666677777888888888887765 4788888887777777666655555544
No 146
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.12 E-value=0.12 Score=35.23 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=48.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
.|+. .+.-..+.++.....++...++|.+.+.++...|..+.|.+.+...++........
T Consensus 129 p~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 129 PELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667 77788899999999999999999999999998898888888777666655544443
No 147
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.07 E-value=0.092 Score=34.73 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
|+.-++.+.....+++.+...+.+++.+..+.++.|.+.+....+..+...+..+|.+.+
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~ 181 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR 181 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence 778888888888889999998888899988888888888888888777777777774333
No 148
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.00 E-value=0.016 Score=36.50 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=35.2
Q ss_pred Cccc-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-hHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATV-AYALAFATAKTFLDLHMRIG-LHGVFFLYG 48 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 48 (88)
+|++ .+.|+++.++.... +.++..+.|.+.+.+.+..| |++..+...
T Consensus 338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 5788 88999999986544 55777799999999998887 664444443
No 149
>KOG0569|consensus
Probab=94.94 E-value=0.17 Score=34.22 Aligned_cols=65 Identities=14% Similarity=0.012 Sum_probs=43.0
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFAT-AKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
++|+- .+.||....+......++..++ ....|.+... ..|.+.+.+-.+...+. .....++||+.
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESP 208 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESP 208 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 46899 9999999888888777777777 4444555533 34664444444444444 44567799983
No 150
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=94.92 E-value=0.27 Score=33.19 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=45.7
Q ss_pred CCccc-hhhH--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------------chHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 1 MGNII-PKGR--GIASGLVATVAYALAFATAKTFLDL--HMRI-------------GLHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 1 ~~E~~-~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
++|+. .+.| +.+.++......+++.++..+.... .+.+ +.+..|++-++..+++.+...++.
T Consensus 139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 46888 7765 4678877777777777776655432 1111 345677777777888888888889
Q ss_pred ccCCC
Q psy7005 63 PETEG 67 (88)
Q Consensus 63 pet~~ 67 (88)
+|..-
T Consensus 219 ~E~~~ 223 (477)
T TIGR01301 219 KENPL 223 (477)
T ss_pred eccCC
Confidence 99653
No 151
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.4 Score=32.41 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=47.5
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|+- .+.|.+-.++-.....+++++..++.+++.+..+ ++....+++.+.++..+++++-..|.
T Consensus 138 ~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 138 PEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4554 7889999999999999999999999998887654 34455566666666666666655554
No 152
>PRK03699 putative transporter; Provisional
Probab=94.70 E-value=0.14 Score=33.00 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
.+++..++......++..+.|.+.+.+.+..|++..++..++++++..+. ....+.+
T Consensus 326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 382 (394)
T PRK03699 326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM-CILLGFV 382 (394)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH-HHHHHHH
Confidence 35677788888888999999999999999999888887777776666543 3334443
No 153
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=94.70 E-value=0.099 Score=34.84 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=32.6
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG 39 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (88)
++. .+.+++..++......++..+.+.+...+.+.+|
T Consensus 378 ~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 378 RLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455 7788999999999999999999988888888887
No 154
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.54 E-value=0.13 Score=33.07 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=41.6
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGL-VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI 60 (88)
Q Consensus 6 ~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (88)
.+.|+++.+. ......+++.+.+.+.+.+.+..|++..|.+.+++..+..+...+
T Consensus 338 ~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 338 VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 456788899999999999999999888888887777776665443
No 155
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.32 E-value=0.22 Score=32.07 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
+.|..+..+.+...++++++.....+++.++.+|.+.|.+-++..+++.+..+
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 45788888999999999999999999999999998888877777776666444
No 156
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=94.14 E-value=0.3 Score=35.64 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
.+.. .+.|++++|+....+.++..+.+.+...+... .++...+++.+.+..+..++....+|++
T Consensus 348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566 78899999999999998887766665544331 2333445555555444444444455554
No 157
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=94.12 E-value=0.98 Score=29.97 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
++.++.+.++.....+++..++..+.+.++++.|+....++-+.....+.+.....
T Consensus 330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998877777777777776665543
No 158
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=94.07 E-value=0.83 Score=29.53 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
+++..++....+.++..+.+.+.+.+.+..||+..|.+.+.++.++.+..+
T Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 337 SATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667766677888899999999888888777777655543
No 159
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.032 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=48.4
Q ss_pred ccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 3 NII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
|+- .+.-+++.|+...++++ ++.......+.+.+..||.+.|.++.+.++++.++......
T Consensus 373 e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 373 EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred ccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 455 56667888888888888 88888888888878899999999998888888877665544
No 160
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=93.98 E-value=0.37 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
..+.....+.++..+.+.+.+.+. ..+|+..|++.+....+..+..+...||+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555666677777777776554 45888888888877777766655555554
No 161
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=93.93 E-value=0.14 Score=33.71 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI---GLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 59 (88)
++.++...++....+.+++++.|.+.+.+.+.. +|...+.+.++..+++.++..
T Consensus 391 ~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 391 PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 568899999999999999999998888776542 366677777777777665543
No 162
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.91 E-value=0.35 Score=31.18 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+.|++..++....+.++..+++.+...+.+..++....+...+..++...+...++.
T Consensus 339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK15402 339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLK 396 (406)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999988888877777654444444444444444433333
No 163
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=93.79 E-value=0.13 Score=34.21 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
++.|++..|+....+.+++.+.+.++. .....+|...|++.+++.+++.+..+
T Consensus 378 ~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 378 RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 567888899987777777777776643 11223577788888777777766543
No 164
>PRK10504 putative transporter; Provisional
Probab=93.63 E-value=0.24 Score=32.53 Aligned_cols=38 Identities=8% Similarity=-0.129 Sum_probs=32.6
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
+.. .+.|+.+.|+......++..+++.+.+.+.+..+.
T Consensus 380 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 380 KDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456 78899999999999999999999998888777654
No 165
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=93.30 E-value=1.8 Score=30.58 Aligned_cols=52 Identities=12% Similarity=-0.076 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 59 (88)
.|.....+.++..++++++.+.+.+++.+.. +|.+.|.+-++.++++.+...
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999887554 466677766666666655443
No 166
>PRK10054 putative transporter; Provisional
Probab=93.11 E-value=0.43 Score=30.93 Aligned_cols=50 Identities=8% Similarity=-0.008 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.+.|+++.+.. ..++++..++|...+.+.+..|....+++.+.+.++..+
T Consensus 329 ~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 329 PGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred cccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 55677777754 477899999999999999998866566665444444333
No 167
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=93.00 E-value=0.31 Score=31.63 Aligned_cols=37 Identities=11% Similarity=-0.208 Sum_probs=32.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI 38 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (88)
.|.. .+.|++++|+......++..+++.+.+.+.+..
T Consensus 323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 323 ASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 3566 789999999999999999999999999988774
No 168
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.45 E-value=0.28 Score=30.56 Aligned_cols=37 Identities=11% Similarity=-0.147 Sum_probs=29.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI 38 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (88)
.|.. .+.|+++.|+....+.++..+.+.+.+.+.+..
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 327 QRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566 778888888888888888888888888777654
No 169
>PRK10091 MFS transport protein AraJ; Provisional
Probab=92.36 E-value=1.8 Score=27.84 Aligned_cols=53 Identities=8% Similarity=-0.182 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 11 IASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+.+.......+++.+.|.+.+.+.+. .++++.+.+.+..+.+.......+.+
T Consensus 324 ~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 324 LGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 333445667789999999999998885 57777777766655555554444443
No 170
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=92.36 E-value=0.059 Score=36.44 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI 60 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (88)
|..+.++.++.-++++++.|.+.+++.++.||...|..-+.-+..+.+..++
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999998888887777777766554
No 171
>KOG3762|consensus
Probab=92.17 E-value=0.15 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (88)
++.|.+++++...... ++-.+++++.+.+++.++.+.+|.++++.|++..++..
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 6788999988876655 55567777778888889989999999998888877654
No 172
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=91.96 E-value=2.2 Score=27.42 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVAT-VAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 6 ~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.+.|++++++... ...++..+.+.+.+.+.+..|. ..|++.+.+.+++.+
T Consensus 323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 323 GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 4567888998764 4558888899999999999885 467777776665543
No 173
>PRK10429 melibiose:sodium symporter; Provisional
Probab=91.69 E-value=2.8 Score=27.97 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=37.2
Q ss_pred Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|+- .+.|.+..++-.....+++.+++...+.+.... ++.....+++++..+.....++..+|.
T Consensus 132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 4554 678888888866666666666655544443332 234445555555555555565556664
No 174
>PRK09848 glucuronide transporter; Provisional
Probab=91.65 E-value=2.7 Score=27.68 Aligned_cols=34 Identities=9% Similarity=-0.099 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
+.++...|+......++..+.+.+.+.+++..|+
T Consensus 358 r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 358 RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3468888999999999999998888887766553
No 175
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=91.46 E-value=0.69 Score=34.00 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=40.3
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
+.. .+.|++++|+....+.++..+.+.+...+... .+....+++.+...++.....+...|
T Consensus 361 ~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (1140)
T PRK06814 361 AWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILILRLLP 423 (1140)
T ss_pred hhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 556 78899999999999999999999888877643 44444444444443443333333333
No 176
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=90.54 E-value=2.6 Score=28.53 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
-+...|+..+.+-+++++.|.++....+..| +...++.+....+++.+..|.+.-+
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788888888889999988888877754 4557888888888888887776544
No 177
>PRK03633 putative MFS family transporter protein; Provisional
Probab=89.87 E-value=2.2 Score=27.39 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=28.1
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR 37 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (88)
+.. .+.|++++++......++..+.+.+.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 121 CSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345 67799999999888888988888888776554
No 178
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=89.61 E-value=3.5 Score=27.90 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=35.8
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLH----------MRIGLHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
+.- .+.|++++|+......+++.+...+..... ...+..+.|...+...++..+..+...
T Consensus 409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 788999999887777777777766663211 111234566666666655554444433
No 179
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=89.54 E-value=1.2 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.042 Sum_probs=23.7
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 35 HMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
.+..+|..++++....+++...+.+.+.|||.-++-
T Consensus 54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~W 89 (105)
T PF10183_consen 54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTW 89 (105)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 455677767766555555555666677899987653
No 180
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=89.36 E-value=1.8 Score=29.01 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
.+.-+...|+..+.+.++++..|..+....+..| +...|+++..+.+++.+..+...
T Consensus 344 ~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 344 PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999998887 66788888888888888766544
No 181
>PRK10133 L-fucose transporter; Provisional
Probab=89.23 E-value=4.1 Score=26.99 Aligned_cols=32 Identities=13% Similarity=-0.131 Sum_probs=22.1
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDL 34 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (88)
|+. .+.|...+++......++..+.+.+.+.+
T Consensus 144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 55566678888888778888887776543
No 182
>PRK10429 melibiose:sodium symporter; Provisional
Probab=89.22 E-value=4.9 Score=26.82 Aligned_cols=33 Identities=18% Similarity=-0.058 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
..+...|.......++..+.+.+.+.+++..|+
T Consensus 364 ~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 364 CESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345567888888889999999988888776554
No 183
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=89.01 E-value=5.1 Score=26.72 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=42.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL--------HGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|+- ...-++..++-..+.+++..+...+...+.+.++. .+..++...+. +..+.....+|+.+.
T Consensus 344 a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~-ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 344 ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ-LLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH-HHHHHHHHHcCCCch
Confidence 3455 56678889999999999999988888888777663 12233333333 333444556777554
No 184
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=88.85 E-value=5.2 Score=26.66 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 57 (88)
++.-+..+++++..-.+++.+.+...+++.++. +|++...+++..+.+..+.
T Consensus 129 pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 129 PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999999999999988887 7999999888888877654
No 185
>TIGR00895 2A0115 benzoate transport.
Probab=88.14 E-value=0.96 Score=28.54 Aligned_cols=32 Identities=9% Similarity=-0.140 Sum_probs=23.1
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLD 33 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 33 (88)
+|.+ .+.|+++.|+......++..+.+.+.+.
T Consensus 364 ~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 364 ALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4667 7777888887777777777777766554
No 186
>KOG2532|consensus
Probab=87.44 E-value=0.53 Score=31.74 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
.=+..+|+......+..++.|.+.+.+.. .-.|+++|++.+++.+++.++..++
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 34566788888888888888888888773 3478999999999988888765544
No 187
>KOG2325|consensus
Probab=87.39 E-value=2 Score=29.34 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL--------------HGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
.+.|.++++......-++..++|.+-+. +..++. ..+-|+.+..+++..++..+++.|....
T Consensus 160 ~~dR~rA~a~~~~~~vlg~ilGp~~q~~-f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 160 VEDRPRAFAATSGGFVLGIILGPTIQLA-FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred ccchHHHHHHhhhHHHHHHHHhHHHHHH-HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 5678888887776555555555544432 222221 1356888888888888888888886433
No 188
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=86.98 E-value=6.6 Score=25.72 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVF 53 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (88)
.++++.|+.....+....+.+....++... +..+.+...+....+
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 378888888888888888888887776555 445556555444433
No 189
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=86.75 E-value=3.8 Score=26.26 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy7005 14 GLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGS 49 (88)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (88)
+.+.....+...+.+.+.+.+....|+.....+.+.
T Consensus 326 g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 326 GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 444455566777777777788877776543444333
No 190
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=85.70 E-value=7.6 Score=25.93 Aligned_cols=55 Identities=24% Similarity=0.171 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
++-+.-.+++...+++.+.++|++++++.|..| |......++...++..++.+..
T Consensus 329 ~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 329 AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 344555778888899999999999999999874 6667777777777766665543
No 191
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=85.56 E-value=0.0082 Score=39.07 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+.|+. .+.|+...++......++..+...+...+.. ..+|+..+.+-+...++. .+...++||+
T Consensus 127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES 194 (451)
T PF00083_consen 127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 46888 8899888877766655555554444332222 234775555554444443 3445789998
No 192
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=85.53 E-value=4.6 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLY 47 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (88)
.+++.++. ..+.+++.+.|.+.+.+.+..|.+..+++.
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 34556664 567788889999888888888877666533
No 193
>PRK11462 putative transporter; Provisional
Probab=85.47 E-value=8.7 Score=25.69 Aligned_cols=35 Identities=9% Similarity=-0.317 Sum_probs=23.9
Q ss_pred hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 6 PKGRGIAS--GLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 6 ~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
+..|..+. +.......++..+.+.+.+.+++..|+
T Consensus 354 tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 354 NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44565555 444588888888888888877765443
No 194
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=85.40 E-value=1.8 Score=26.89 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 5 IPKGRGIASGLVATVAYALAFATAKTFLDLHMR 37 (88)
Q Consensus 5 ~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (88)
|++.|+++.|+......+.+.+.+.++..+...
T Consensus 125 FP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 125 FPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred CccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 356799999999999999999988888776655
No 195
>PRK11043 putative transporter; Provisional
Probab=84.83 E-value=5.3 Score=25.72 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR 37 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (88)
++.|++++|+....+..++...+.+.+.+.+.
T Consensus 326 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 326 PQATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45689999999999888888888888877654
No 196
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=84.45 E-value=10 Score=25.51 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=34.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLH 41 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (88)
+|+- .+.|++..++.+..--++..+...++..+++.++..
T Consensus 115 ~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 115 ADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 5677 899999999999999999999999999888877643
No 197
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=84.30 E-value=8.2 Score=24.40 Aligned_cols=49 Identities=18% Similarity=0.061 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
++.|+++.++.....+..+.+.+...+.+.+..+ +.+.++.....+..+
T Consensus 330 ~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 378 (385)
T TIGR00710 330 PHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA--WPMSLSCLVLAVVSV 378 (385)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhccccCh--HHHHHHHHHHHHHHH
Confidence 4568899999888888777777776663333222 344444444444333
No 198
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=83.54 E-value=9.8 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
+++..++......++..+++.+.+.+.+..|.+..+...+....+.
T Consensus 338 ~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 338 AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 4456666677778889999999999998888765555544444333
No 199
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=83.52 E-value=9 Score=24.28 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYAL 23 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~ 23 (88)
++.|+++.++........
T Consensus 317 ~~~~g~~~~~~~~~~~~~ 334 (377)
T PRK11102 317 PHMAGTASSLAGTLRFGI 334 (377)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 456778888776655433
No 200
>PRK09669 putative symporter YagG; Provisional
Probab=82.41 E-value=12 Score=24.73 Aligned_cols=32 Identities=3% Similarity=-0.221 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
.+...|+......++..+.+.+.+.+++..|+
T Consensus 360 ~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 360 DGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45567888888899999999998888877654
No 201
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=81.06 E-value=1.8 Score=29.18 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL-HGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
.+.-+...|+.+.+++..++++|+.+..+.+..|- +..+........+..+ ....+|+.+.+
T Consensus 372 ~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~~~~ 434 (438)
T COG2270 372 KGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVPGRR 434 (438)
T ss_pred CccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCCCCc
Confidence 44456678999999999999999999988877653 3333333333333322 33455655433
No 202
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=80.83 E-value=15 Score=25.02 Aligned_cols=59 Identities=25% Similarity=0.373 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRI--------GLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
|++..+.....+++++.+...+.-.+.... ..+..+.+-+.+.++..+-.++++||.++
T Consensus 186 ~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 186 RGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 488888888999988888776655443322 23566777777777777777788999865
No 203
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.80 E-value=7.9 Score=21.17 Aligned_cols=49 Identities=6% Similarity=-0.067 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--LHGVFFLYGSCSVFG 54 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 54 (88)
.+.|+.++++-...-.+.+.++...++++.+++- -.|.++++..+....
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6778899999999999999999999999998863 234444444444333
No 204
>KOG4112|consensus
Probab=76.82 E-value=9.3 Score=20.31 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005 23 LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
.+.++++++++..+.+++ +.+++++.++++.++.
T Consensus 34 i~aiVg~i~Gf~~Qqls~--tvy~vg~~~v~t~li~ 67 (101)
T KOG4112|consen 34 IGAIVGFIYGFAQQQLSV--TVYIVGAGFVFTLLIT 67 (101)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 445667777777888775 4455555555555544
No 205
>KOG2533|consensus
Probab=75.58 E-value=4.5 Score=27.70 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHH-HHHHHHHHHHHHHHHhccCCCCC
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFL-YGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
|-+..+.....+...+.+.+.++....+. .+|.+.+.+ .+.+.+.......++..|.+++.
T Consensus 402 ~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~~~~~~~v~~~~~~~~n~k 464 (495)
T KOG2533|consen 402 ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACVGIVLLLVILFYKERENKK 464 (495)
T ss_pred hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555556666666666554433 466666633 33333333333444455544443
No 206
>KOG2563|consensus
Probab=75.12 E-value=4.7 Score=27.53 Aligned_cols=36 Identities=17% Similarity=-0.093 Sum_probs=29.6
Q ss_pred Ccc-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNI-I-PKGRGIASGLVATVAYALAFATAKTFLDLHMR 37 (88)
Q Consensus 2 ~E~-~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (88)
+++ | .++|+++..++.+.|-++..++..+-|.++.+
T Consensus 165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 344 5 89999999999999999998888877776654
No 207
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=73.86 E-value=12 Score=21.12 Aligned_cols=28 Identities=4% Similarity=0.175 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 42 GVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
|-..+....+++. .+..+++..+..+..
T Consensus 41 WQLviNt~ttIit-FlmvfLIQn~q~Rd~ 68 (132)
T PF04120_consen 41 WQLVINTATTIIT-FLMVFLIQNTQNRDT 68 (132)
T ss_pred HHHHHccHHHHHH-HHHHHHHHhhhhhHH
Confidence 4566677777774 444556777766654
No 208
>PTZ00207 hypothetical protein; Provisional
Probab=71.52 E-value=14 Score=25.99 Aligned_cols=58 Identities=5% Similarity=-0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-------------hHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 11 IASGLVATVAYALAFAT-AKTFLDLHMRIG-------------LHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+=..+....+-+++++. .++++.+++... .+.+|.++++.++++++......-+||..
T Consensus 487 ~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~ 558 (591)
T PTZ00207 487 KHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRL 558 (591)
T ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHH
Confidence 33444444455555554 555666665532 13489999999999998877666666643
No 209
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=70.38 E-value=32 Score=23.62 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLY 47 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (88)
+..|+.-+|-......+.+++...+.+.+.+..||.....+.
T Consensus 298 ~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~ 339 (472)
T TIGR00769 298 PNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALIT 339 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 556777777777766677766666668999999997544443
No 210
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=69.52 E-value=13 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005 23 LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
.+.+++++.+++.+.+. .++..+++..+++.+.+
T Consensus 19 ~~~iisfi~Gy~~q~~~--~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFS--YTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhe
Confidence 34455666666676654 46666666666665543
No 211
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=69.26 E-value=29 Score=22.60 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (88)
|+++.++......++..+...++.. ....|.+..+.+.+...++++..
T Consensus 328 ~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 328 AGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred chhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHH
Confidence 6888888888888888888877764 45667665665544444444443
No 212
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=68.01 E-value=29 Score=22.28 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATV-AYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 8 ~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
.+++.+++.... +.++..+.+.+.+.+.+..|. ..++..+++.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 325 EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 356667766533 345557889999999998886 3555555554443
No 213
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=67.91 E-value=35 Score=23.18 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hchHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR-------------------IGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 58 (88)
.+.-+..+.+.-..|-+++.+.|.+..++..+ ..++++|...+...++..+..
T Consensus 135 ~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 135 PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34456678888889999999999988877662 124556666666666655543
No 214
>PRK03612 spermidine synthase; Provisional
Probab=67.40 E-value=39 Score=23.43 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHH
Q psy7005 11 IASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 56 (88)
...|-.+..+.+++++++.+++.++- .+|...+.++.+.+.++..+
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 45677788888999999988887654 56765555555555544443
No 215
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=65.92 E-value=41 Score=23.12 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 10 GIASGLVATVAYALAFATAKTFLDLHMRIGL--HGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
|..+|+.+..--+-..+.....+.+.+..|- .+.+.+=++..+++.++.++.+|.++.
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6667777777666667777666665555552 345666677777888888888998764
No 216
>KOG4686|consensus
Probab=63.65 E-value=25 Score=23.31 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=31.2
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 4 II-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG 39 (88)
Q Consensus 4 ~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (88)
+. .+.-+++.|+...+++++-.+++.+.+.+.+.-|
T Consensus 380 ~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 380 LVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 44 6678899999999999999999999998887765
No 217
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=62.14 E-value=44 Score=22.19 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 20 AYALAFATAKTFLDLHMRIGL--HGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
|-+.+++...+...+.+..+. ..+|..-..+.+++.++.....+|..+.
T Consensus 172 n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 172 NGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred hHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 444555555555555665543 4567666667777777777777887665
No 218
>PRK09848 glucuronide transporter; Provisional
Probab=60.50 E-value=46 Score=21.96 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATV 19 (88)
Q Consensus 6 ~~~R~~~~~~~~~~ 19 (88)
.+.|.+..++-...
T Consensus 141 ~~~r~~~~~~r~~~ 154 (448)
T PRK09848 141 PQSRARLGAARGIA 154 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677766555433
No 219
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=60.30 E-value=29 Score=19.55 Aligned_cols=30 Identities=3% Similarity=-0.154 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLH 35 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (88)
...|..--.+...+|.+.+.+..+++.+..
T Consensus 70 ~~~k~~~~qls~v~Nilvsv~~~~~~~~~~ 99 (142)
T PF11712_consen 70 QELKSVKRQLSTVFNILVSVFAVFFAGWYW 99 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777788888888888887743
No 220
>KOG2504|consensus
Probab=60.26 E-value=0.91 Score=30.97 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=40.3
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
|+. .+-=+.+.|+....+-++..+++.+.+.+.+..+ +...|...+.+..++.. .++..|
T Consensus 415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~-~~~~~~ 476 (509)
T KOG2504|consen 415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV-LLLILR 476 (509)
T ss_pred HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHH-HHHHhH
Confidence 444 5555678888888888888888888887777766 44455555555555544 344455
No 221
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=59.01 E-value=51 Score=22.47 Aligned_cols=37 Identities=8% Similarity=-0.060 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy7005 19 VAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGL 55 (88)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (88)
..-+++.++|++.+.+.+..+....+......|.+-.
T Consensus 366 maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 366 MAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3446778888888888888876655554444444443
No 222
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=58.24 E-value=3 Score=26.79 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH------HHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHG------VFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
.|-.+.++.+....+.+|+...++..+...+...| .||+. .+.+++.|.++.+++..
T Consensus 129 Lr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~----LFlaiLIWlY~H~~~~~ 191 (381)
T PF05297_consen 129 LRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLL----LFLAILIWLYVHDQRHA 191 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCC
Confidence 46677788888888888877777665544443333 23322 34445677888888743
No 223
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=58.19 E-value=67 Score=23.08 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (88)
.+.|+.+.++...+..++++++..+.+.-.....| .-|..|+++..+..++
T Consensus 596 ~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 646 (654)
T TIGR00926 596 PNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQA-AEFFLFASLMLVVMAI 646 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHH
Confidence 45788889999999999999888887643322222 3455555555554443
No 224
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=57.48 E-value=47 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFAT 27 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~ 27 (88)
+.|+....+...+.-+.++..
T Consensus 195 RkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 195 RKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 225
>KOG0252|consensus
Probab=56.82 E-value=66 Score=22.60 Aligned_cols=46 Identities=15% Similarity=-0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 11 IASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.-.+...+...++++++++.++++-+.+|-+.++..-..+.+++.+
T Consensus 84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 3445566777889999999999999999976666666566666655
No 226
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=54.55 E-value=39 Score=19.24 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.4
Q ss_pred CCccc-hhhHHHHHHHHHHHHHHHHHH
Q psy7005 1 MGNII-PKGRGIASGLVATVAYALAFA 26 (88)
Q Consensus 1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~ 26 (88)
+.||+ ...|....+.+..+.+....+
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~k~~ 86 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAVKSL 86 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35899 999998888776665544433
No 227
>KOG2563|consensus
Probab=53.66 E-value=5 Score=27.42 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG----LHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 71 (88)
+..-++..|+....+.+.+++..++.....+..+ +...-+.....+.+..+...++-|+-+..+.|
T Consensus 390 Pv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 390 PVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred ccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 3444555666777778888888888877777766 33234445555566666666666655554444
No 228
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=53.36 E-value=53 Score=20.39 Aligned_cols=44 Identities=9% Similarity=-0.118 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy7005 7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVF 53 (88)
Q Consensus 7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (88)
+-......+......++..++.++.+.+.. ..|.+.+.++...+
T Consensus 21 rk~dp~l~~~ml~a~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~ 64 (224)
T PF13829_consen 21 RKEDPKLPWLMLGAFLGPIAVFVLIGLLFG---SWWYWLIIGILLGL 64 (224)
T ss_pred HHHCcchHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHH
Confidence 333344444444444444444444444433 23444444444333
No 229
>KOG0253|consensus
Probab=52.58 E-value=75 Score=21.97 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005 34 LHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 66 (88)
.+.++||+|..+..+....+. ....+++||+.
T Consensus 223 vm~~~gwr~~l~~~~~pl~~~-a~f~~w~~ESp 254 (528)
T KOG0253|consen 223 VMSNFGWRYLLFTSSTPLMFA-ARFLVWVYESP 254 (528)
T ss_pred HHHhhhHHHHHHHHHhHHHHH-HHHHhhcccCc
Confidence 456779997666655443333 33456789973
No 230
>KOG1237|consensus
Probab=51.84 E-value=35 Score=24.04 Aligned_cols=49 Identities=6% Similarity=-0.021 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005 10 GIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL 58 (88)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (88)
..-+.++.....++.++..-+..++.+..+|.+.|.+......++.+.+
T Consensus 193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 4566777778888888888887777788899877777766666665543
No 231
>KOG3764|consensus
Probab=50.49 E-value=29 Score=23.78 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (88)
+-+...+++....-++.+++|.+.+.+++..|..|...+.++...+-.-.
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888899999999999999888777777666655443
No 232
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=49.83 E-value=63 Score=20.29 Aligned_cols=36 Identities=14% Similarity=-0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q psy7005 11 IASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFL 46 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (88)
...++......++..+.....+.+.++.|.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (366)
T TIGR00886 37 AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL 72 (366)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 345666677777788888888888888886654433
No 233
>KOG3832|consensus
Probab=49.72 E-value=55 Score=20.40 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGV 43 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (88)
.-+..+|+.++.|-+.+ -+....|..++.-||...
T Consensus 11 lysq~vgllymfnlivg-tgalalpkafatagwlls 45 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVG-TGALALPKAFATAGWLLS 45 (319)
T ss_pred hhhhhhhHhhhhhhhhc-cccccchHhHhhccHHHH
Confidence 44555666666654433 234455666666677543
No 234
>KOG3098|consensus
Probab=49.04 E-value=87 Score=21.63 Aligned_cols=30 Identities=17% Similarity=-0.041 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLH 35 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (88)
++.|..+.++.-.-+.+.+.+..+..|...
T Consensus 383 ~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 383 PDDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 466788888888888888887777777654
No 235
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=47.19 E-value=74 Score=20.30 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=23.5
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 37 RIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
..|....|.+--...+++.+...+++.|.|.+.
T Consensus 218 ~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 218 KNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred hccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 345555666666667788888888999987653
No 236
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=46.38 E-value=65 Score=20.32 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFL 32 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~ 32 (88)
+-+|..|+|+...+-...+.+......
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 456777777776665566666665543
No 237
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=46.07 E-value=99 Score=21.46 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFF 45 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (88)
++.++.-+|-......+.+.+..++.+.+.+..||...-.
T Consensus 314 ~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 314 PNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555665555556666666677888999999975433
No 238
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=45.87 E-value=58 Score=18.75 Aligned_cols=25 Identities=12% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhccCC-CCCHH
Q psy7005 47 YGSCSVFGLIYLYIWLPETE-GKTLH 71 (88)
Q Consensus 47 ~~~~~~~~~~~~~~~~pet~-~~~~~ 71 (88)
.++...+.+++....+||.. .|+.+
T Consensus 101 IAg~~lv~filmvVLiPEpg~QRS~~ 126 (144)
T PF01350_consen 101 IAGVLLVFFILMVVLIPEPGKQRSQQ 126 (144)
T ss_pred hHHHHHHHHHHHHhcccCCCCcCCcc
Confidence 46666777777777899974 44443
No 239
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=44.82 E-value=1e+02 Score=21.27 Aligned_cols=34 Identities=12% Similarity=-0.034 Sum_probs=27.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH 35 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (88)
+|++ .++=.+-.++....+.++..+++.+...+.
T Consensus 155 ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 155 NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777 777778888888999999988888776655
No 240
>KOG2325|consensus
Probab=44.27 E-value=8 Score=26.61 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=36.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVF 53 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (88)
+|+. ++..++++++....+-.+..++|.....+....|.++...+..+...+
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV 466 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence 4566 677777788877888888888888888888888877555444443333
No 241
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=42.61 E-value=67 Score=18.52 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=16.5
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALA 24 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~ 24 (88)
.||+ ...|....+.+..+.+...
T Consensus 59 kDm~Pp~~R~~i~~~~s~t~s~~k 82 (145)
T TIGR00986 59 KDIVPPTTRGWIYHKYSTTTNFVK 82 (145)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHH
Confidence 5889 9999988877766644433
No 242
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=42.17 E-value=83 Score=19.44 Aligned_cols=43 Identities=16% Similarity=0.039 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
..++......+...+.....+.+.++.|.+..+.+-.....+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 33 QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG 75 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence 3566667777788888888889999988776554444444444
No 243
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=41.29 E-value=1.2e+02 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhccCCCCC
Q psy7005 50 CSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 50 ~~~~~~~~~~~~~pet~~~~ 69 (88)
++++..+..+++...+|+|.
T Consensus 192 ~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 192 LGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 33333444445555555544
No 244
>PHA02692 hypothetical protein; Provisional
Probab=40.83 E-value=50 Score=16.54 Aligned_cols=9 Identities=22% Similarity=0.766 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q psy7005 54 GLIYLYIWL 62 (88)
Q Consensus 54 ~~~~~~~~~ 62 (88)
..+++++++
T Consensus 59 ~vll~flYL 67 (70)
T PHA02692 59 GVLLCFHYL 67 (70)
T ss_pred HHHHHHHHH
Confidence 333444433
No 245
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=40.06 E-value=67 Score=19.91 Aligned_cols=21 Identities=10% Similarity=0.157 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy7005 42 GVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~ 62 (88)
|..|++.++.++.+++.++++
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~i 248 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLFI 248 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444443
No 246
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=39.59 E-value=1.2e+02 Score=20.67 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hh-chHHHHHHHHHHHHHHHHHHHHHh
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHM---------RI-GLHGVFFLYGSCSVFGLIYLYIWL 62 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 62 (88)
.+.++.++|+......+++.+...+...... .. ...+.|...+...++..+..+...
T Consensus 410 ~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 410 QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999888888888877766532210 01 123456666666655555554433
No 247
>PF12832 MFS_1_like: MFS_1 like family
Probab=37.78 E-value=56 Score=16.26 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 13 SGLVATVAYALAFATAKTFLDLHMRIG 39 (88)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (88)
.|+...+.++..++.+.+...+.++.+
T Consensus 37 iGil~~i~~~~~~~~~pl~g~laDk~~ 63 (77)
T PF12832_consen 37 IGILSAIRPLIRFLAPPLWGFLADKFG 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444445555555555555555444
No 248
>PF13347 MFS_2: MFS/sugar transport protein
Probab=37.78 E-value=1.2e+02 Score=19.96 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 13 SGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.+.......+.+.+...+.+.+.+++|.+..+..-....++..+
T Consensus 262 ~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 262 ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 44555567777888888888888888765444433333333333
No 249
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=35.35 E-value=58 Score=17.38 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHh
Q psy7005 52 VFGLIYLYIWLPETEGKTLHEIELHFK 78 (88)
Q Consensus 52 ~~~~~~~~~~~pet~~~~~~~~~~~~~ 78 (88)
++.+..+||.+-....+..++.+++.+
T Consensus 16 vl~~~ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 16 VLIFAIFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 333344555565555555555555443
No 250
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=34.36 E-value=1.5e+02 Score=20.05 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHH---HHHHHhccCCCCCHHHHHHHH
Q psy7005 25 FATAKTFLDLHMRIGLH-GVFFLYGSCSVFGLI---YLYIWLPETEGKTLHEIELHF 77 (88)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~pet~~~~~~~~~~~~ 77 (88)
..+|.+.|.+...+||- ...|+..+..+.+.+ .....--+.+|+++.|+-+..
T Consensus 67 GaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~ 123 (376)
T PF02554_consen 67 GAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKY 123 (376)
T ss_pred ccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 35677777777777875 445555444444443 222344566899998775543
No 251
>COG3817 Predicted membrane protein [Function unknown]
Probab=33.63 E-value=1.3e+02 Score=19.33 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Q psy7005 23 LAFATAKTFLDLHMRIGL-HGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELH 76 (88)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~ 76 (88)
...+.++++|.+.. ++. ..++.-.+..++++.+.....-.+|....+.|-++.
T Consensus 107 ~tlig~~lf~~~s~-~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl 160 (313)
T COG3817 107 LTLIGSLLFPDLSF-FDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEARRL 160 (313)
T ss_pred HHHHHHHHhccccc-cCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 33444555554322 221 346666777777777776666667766666655443
No 252
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=33.42 E-value=31 Score=20.54 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy7005 40 LHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~ 57 (88)
|.|.|+...++.+...++
T Consensus 3 WK~aF~~Lla~~l~~~~~ 20 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIV 20 (187)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 778888876665555444
No 253
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.07 E-value=51 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005 22 ALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG 54 (88)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (88)
+..++.|+++-+.++...|...+++|.++..++
T Consensus 21 ~~~~llp~~~~pfls~~qk~y~~f~f~~iss~g 53 (401)
T PF06785_consen 21 VAAFLLPLVCYPFLSDSQKNYGYFVFSIISSLG 53 (401)
T ss_pred HHHHHHHHhHhhhcCHHHHhcceeehHHHHHhH
Confidence 455667776655555545555667776666554
No 254
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=32.94 E-value=1.1e+02 Score=18.22 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccCC
Q psy7005 15 LVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPETE 66 (88)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~ 66 (88)
++...--+.++++++++-.++.++.-.|+-.+|+........+.. ...|..+
T Consensus 72 igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp~~~ 124 (173)
T PF11085_consen 72 IGIVFIGVFSIVAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIFPMIK 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcccccCCh
Confidence 344445567777788877778877655777777765544333322 3455554
No 255
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=32.91 E-value=70 Score=16.92 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhccCCCCC
Q psy7005 41 HGVFFLYGSCSVFGLIYLY--IWLPETEGKT 69 (88)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~--~~~pet~~~~ 69 (88)
+|++++..+..+++.++.- +.+||.++..
T Consensus 3 kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~ 33 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLFTNRMWTVPESKEIS 33 (95)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCCccccch
Confidence 3444444444444444322 3578766554
No 256
>PHA02650 hypothetical protein; Provisional
Probab=32.73 E-value=77 Score=16.31 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy7005 41 HGVFFLYGSCS 51 (88)
Q Consensus 41 ~~~~~~~~~~~ 51 (88)
.|..+++..+.
T Consensus 48 ~~~~~ii~i~~ 58 (81)
T PHA02650 48 NGQNFIFLIFS 58 (81)
T ss_pred hHHHHHHHHHH
Confidence 34444444333
No 257
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.47 E-value=85 Score=18.93 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy7005 40 LHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
|.|.|++..++..+.+++...+
T Consensus 11 WKw~f~iLLAln~l~~~~i~~~ 32 (197)
T COG4698 11 WKWLFFILLALNTLLAVLIALF 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 6777777666555555544433
No 258
>PHA02844 putative transmembrane protein; Provisional
Probab=32.39 E-value=76 Score=16.11 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhc
Q psy7005 41 HGVFFLYGSCSVFGLI-YLYIWLP 63 (88)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~p 63 (88)
.|..+++..+.++..+ +++++++
T Consensus 47 ~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 47 STKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443333333 3334443
No 259
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=32.01 E-value=1.4e+02 Score=19.15 Aligned_cols=34 Identities=18% Similarity=-0.015 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy7005 11 IASGLVATVAYALAFATAKTFLDLHMRIGLHGVF 44 (88)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (88)
...++......++..+.....+.+.+++|.+..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~ 76 (394)
T PRK11652 43 GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI 76 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 3445556666677777777888888888766543
No 260
>KOG3762|consensus
Probab=31.60 E-value=1.5e+02 Score=21.33 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-HHHHhccCCCCC
Q psy7005 18 TVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY-LYIWLPETEGKT 69 (88)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pet~~~~ 69 (88)
.+-=+..++.+.+++++.+.+--+-.+.+.+....+.+.+ ..+..||++.+.
T Consensus 53 g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P~~~~~i 105 (618)
T KOG3762|consen 53 GTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPPVDKNRI 105 (618)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccCcccCcc
Confidence 3334556666777777777764444555555555555444 446677776654
No 261
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=31.47 E-value=62 Score=20.64 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHH-HHHHH--hchHHHHHHHHHHHHHHHH
Q psy7005 9 RGIASGLVATVAYALAFAT--AKTFL-DLHMR--IGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 9 R~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 56 (88)
|+.-+.+......++++++ |++++ ...+. -.|++.+.+++....+-.+
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLI 56 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLI 56 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433 34444 22222 2366666666555544444
No 262
>PHA03054 IMV membrane protein; Provisional
Probab=31.36 E-value=77 Score=15.92 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=7.9
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy7005 39 GLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~ 56 (88)
++.|..+++..+.++..+
T Consensus 45 ~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILL 62 (72)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 334455554444443333
No 263
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=31.34 E-value=1.1e+02 Score=17.64 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHH
Q psy7005 20 AYALAFATAKTFLDLHMRIGLHGVFF 45 (88)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (88)
......+..++.|.+.+.+|.+|.+.
T Consensus 46 ~Y~~~~~s~l~~P~iv~~lg~K~sm~ 71 (156)
T PF05978_consen 46 LYGSFAISCLFAPSIVNKLGPKWSMI 71 (156)
T ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHH
Confidence 33344444455566677777665543
No 264
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=31.21 E-value=1.6e+02 Score=19.45 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFL 46 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (88)
..++......++..+.....+.+.+.+|.+..+.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (485)
T TIGR00711 38 QVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI 72 (485)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence 34566667777888888888888888887654443
No 265
>PLN02453 complex I subunit
Probab=31.02 E-value=58 Score=17.64 Aligned_cols=32 Identities=13% Similarity=-0.098 Sum_probs=18.0
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 38 IGLHGVFFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
.+|-..+++-....++.+.+.+-+-|+|.-.+
T Consensus 59 EdWE~p~Y~~~~~t~vil~Vgl~aKPDtsIqt 90 (105)
T PLN02453 59 EDWELPCYITSFLTIVILGVGLNAKPDTRIET 90 (105)
T ss_pred ccchhhHHHHHHHHHHHHheeeeccCCCcHHH
Confidence 34544444444444554455566789887665
No 266
>PHA02819 hypothetical protein; Provisional
Probab=29.47 E-value=85 Score=15.77 Aligned_cols=16 Identities=6% Similarity=0.272 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy7005 40 LHGVFFLYGSCSVFGL 55 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~ 55 (88)
+.|..+++..+.++..
T Consensus 44 ~~~~~~ii~l~~~~~~ 59 (71)
T PHA02819 44 FLRYYLIIGLVTIVFV 59 (71)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444444444433333
No 267
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=29.23 E-value=1.8e+02 Score=19.45 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 13 SGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
.+.-...+...+.+...+.+.+.+..|.+.....|++...++.+
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl 114 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL 114 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 45556667777777777778888889977776666655555543
No 268
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.97 E-value=67 Score=14.44 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=5.3
Q ss_pred HHHHHHHhccC
Q psy7005 55 LIYLYIWLPET 65 (88)
Q Consensus 55 ~~~~~~~~pet 65 (88)
.+..|.+-|..
T Consensus 24 gi~~w~~~~~~ 34 (49)
T PF05545_consen 24 GIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHcccc
Confidence 34445555554
No 269
>PF15013 CCSMST1: CCSMST1 family
Probab=28.65 E-value=92 Score=15.92 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=2.5
Q ss_pred HHHHHh
Q psy7005 73 IELHFK 78 (88)
Q Consensus 73 ~~~~~~ 78 (88)
+++.+.
T Consensus 60 L~~~L~ 65 (77)
T PF15013_consen 60 LDKNLY 65 (77)
T ss_pred HHhhHH
Confidence 444433
No 270
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.38 E-value=92 Score=15.82 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=7.6
Q ss_pred ccCCCCCHHHHHHHHh
Q psy7005 63 PETEGKTLHEIELHFK 78 (88)
Q Consensus 63 pet~~~~~~~~~~~~~ 78 (88)
|..+....+++++...
T Consensus 30 ~~~k~~~~k~i~~yL~ 45 (85)
T PF11337_consen 30 PYQKHKAEKAIDWYLQ 45 (85)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4444444455555443
No 271
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=27.90 E-value=1.8e+02 Score=19.78 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 24 AFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
+.+++..+..+.. .++.+.++..+....++..+..++.+|.
T Consensus 156 Gl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 156 GLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444433333 1334556666666665555444455553
No 272
>KOG1237|consensus
Probab=27.78 E-value=2.3e+02 Score=20.19 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR 37 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (88)
.+.|+.++++......+++++...+.......
T Consensus 489 ~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 489 ESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999988665444
No 273
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=27.57 E-value=1.7e+02 Score=18.51 Aligned_cols=36 Identities=17% Similarity=-0.014 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy7005 10 GIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFF 45 (88)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (88)
....++......++..+.....+.+.+++|.+....
T Consensus 34 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (355)
T TIGR00896 34 FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVA 69 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH
Confidence 344677777888888888888888888888765443
No 274
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=26.89 E-value=1.2e+02 Score=16.72 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=10.2
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATA 28 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~ 28 (88)
|.+ .+.| ++.+.+..+.-+..++..
T Consensus 49 Erf~~n~~-kAa~~af~v~l~~~~ii~ 74 (118)
T PF12676_consen 49 ERFYENVR-KAASRAFFVALILLFIIL 74 (118)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 455 4433 334444444333333333
No 275
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=26.24 E-value=1.6e+02 Score=18.30 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 34 LHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+++-+| .|++.+.+...+.+++....++|=.
T Consensus 193 ildvlg-pwp~Yivs~v~ilca~~f~lyllfr 223 (236)
T COG5522 193 ILDVLG-PWPFYIVSEVLILCAVWFLLYLLFR 223 (236)
T ss_pred HHHHhc-CccHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555 3677777777666666655555543
No 276
>KOG1726|consensus
Probab=25.84 E-value=1.7e+02 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=10.1
Q ss_pred HHHHHHhccCCCCCH
Q psy7005 56 IYLYIWLPETEGKTL 70 (88)
Q Consensus 56 ~~~~~~~pet~~~~~ 70 (88)
+++|+..|-|+|-+.
T Consensus 69 fv~wL~~p~t~G~~~ 83 (225)
T KOG1726|consen 69 FVIWLLSPATKGASY 83 (225)
T ss_pred HHhhccccccCccHH
Confidence 445667788887753
No 277
>PF15628 RRM_DME: RRM in Demeter
Probab=25.75 E-value=65 Score=17.39 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHhcCc
Q psy7005 65 TEGKTLHEIELHFKQKK 81 (88)
Q Consensus 65 t~~~~~~~~~~~~~~~~ 81 (88)
+||.+.+|++..+.++.
T Consensus 63 frGls~~eIq~cF~~G~ 79 (103)
T PF15628_consen 63 FRGLSREEIQQCFWKGF 79 (103)
T ss_pred hcccCHHHHHHHHhcCc
Confidence 48999999999886543
No 278
>KOG2881|consensus
Probab=25.09 E-value=2e+02 Score=18.62 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=8.5
Q ss_pred hccCCC-CCHHHHHHHHh
Q psy7005 62 LPETEG-KTLHEIELHFK 78 (88)
Q Consensus 62 ~pet~~-~~~~~~~~~~~ 78 (88)
++++++ ..++|.+....
T Consensus 154 ~~~~~~~eE~eEVe~el~ 171 (294)
T KOG2881|consen 154 MSPSEGQEELEEVEAELA 171 (294)
T ss_pred CCCccchhhHHHHHHHHH
Confidence 455555 33555555443
No 279
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.08 E-value=17 Score=18.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=12.4
Q ss_pred ccCCCCCHHHHHHHHhcCcc
Q psy7005 63 PETEGKTLHEIELHFKQKKS 82 (88)
Q Consensus 63 pet~~~~~~~~~~~~~~~~~ 82 (88)
.|...+.++|+++.+..+.+
T Consensus 4 Se~E~r~L~eiEr~L~~~DP 23 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDP 23 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCc
Confidence 34445567888877755544
No 280
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=24.63 E-value=48 Score=18.97 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005 45 FLYGSCSVFGLIYLYIWLPETEGKTLHEIEL 75 (88)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~ 75 (88)
.+.....++. ++..+++..|..+....++.
T Consensus 49 ~int~vaii~-~l~v~liQNtq~rD~aai~a 78 (141)
T COG5478 49 VINTSVAIIT-FLMVVLIQNTQNRDTAAIQA 78 (141)
T ss_pred eeehhHHHHH-HHHHhheeccccccHHHHHH
Confidence 3444444444 34456789987776544433
No 281
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=24.38 E-value=1.2e+02 Score=21.60 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHH---HHHHHhccCCCCCHHHHHHHH
Q psy7005 25 FATAKTFLDLHMRIGL-HGVFFLYGSCSVFGLI---YLYIWLPETEGKTLHEIELHF 77 (88)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~pet~~~~~~~~~~~~ 77 (88)
..+|.+.|.+...+|| ....|+..++.+.+.+ ++.+.--+.+|+++.|+.+.+
T Consensus 67 GAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~ 123 (575)
T COG1966 67 GAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKY 123 (575)
T ss_pred ccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHH
Confidence 3567788888888885 3455665555555444 233344556789998876554
No 282
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=24.36 E-value=2.5e+02 Score=19.47 Aligned_cols=28 Identities=21% Similarity=0.014 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy7005 14 GLVATVAYALAFATAKTFLDLHMRIGLH 41 (88)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (88)
.+......+.+++.+.++|.+.+++|++
T Consensus 291 ll~g~~~~vvA~lg~ii~g~Ld~rfg~k 318 (438)
T COG2270 291 LLIGIALSVVAALGAIIAGFLDERFGSK 318 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444556677888899999999999887
No 283
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=24.27 E-value=78 Score=13.62 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q psy7005 46 LYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 46 ~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
++..+..+..++.+-+++...++
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~R 30 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGR 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ehhhHHHHHHHHhccccCCCCCC
Confidence 44444455555555566655443
No 284
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.16 E-value=2.7e+02 Score=22.36 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=4.6
Q ss_pred HHHHHhchHHHH
Q psy7005 33 DLHMRIGLHGVF 44 (88)
Q Consensus 33 ~~~~~~~~~~~~ 44 (88)
.+...+|..+..
T Consensus 153 lL~~LfG~vGa~ 164 (1355)
T PRK10263 153 TLQPLLHSSGGT 164 (1355)
T ss_pred HHHHHHhHHHHH
Confidence 333444433333
No 285
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=24.02 E-value=2.2e+02 Score=18.79 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVF 44 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (88)
..|+......++..+.....+.+.+++|.+...
T Consensus 39 ~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~ 71 (410)
T TIGR00885 39 QAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI 71 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 456777777788888888888888888876543
No 286
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=23.83 E-value=58 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCCC
Q psy7005 41 HGVFFLYGSCSVFGLI-YLYIWLPETEG 67 (88)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~pet~~ 67 (88)
.|.|++|....+-+.. ++..++||+..
T Consensus 28 YWlfIif~Fp~iG~VaYfvav~LPEl~~ 55 (251)
T COG4700 28 YWLFIIFCFPVIGCVAYFVAVMLPELGA 55 (251)
T ss_pred HHHHHHHHhcccchhhHHHHHhhhHhcc
Confidence 3555555543333333 45567999853
No 287
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.75 E-value=1.2e+02 Score=15.62 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.3
Q ss_pred HHHHHhcc
Q psy7005 57 YLYIWLPE 64 (88)
Q Consensus 57 ~~~~~~pe 64 (88)
..++++-.
T Consensus 15 i~yf~~~r 22 (84)
T TIGR00739 15 IFYFLIIR 22 (84)
T ss_pred HHHHheec
Confidence 33444433
No 288
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.75 E-value=1.4e+02 Score=16.33 Aligned_cols=13 Identities=8% Similarity=0.273 Sum_probs=4.7
Q ss_pred HHHhccCCCCCHH
Q psy7005 59 YIWLPETEGKTLH 71 (88)
Q Consensus 59 ~~~~pet~~~~~~ 71 (88)
||++-....+..+
T Consensus 18 yF~~iRPQkKr~K 30 (109)
T PRK05886 18 MYFASRRQRKAMQ 30 (109)
T ss_pred HHHHccHHHHHHH
Confidence 3334333333333
No 289
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.54 E-value=2.1e+02 Score=18.37 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q psy7005 22 ALAFATAKTFL 32 (88)
Q Consensus 22 ~~~~~~~~~~~ 32 (88)
+.+++..++.|
T Consensus 266 ~Ltilt~IflP 276 (324)
T PRK09546 266 TMSLMAMVFLP 276 (324)
T ss_pred HHHHHHHHHHH
Confidence 55555555555
No 290
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.46 E-value=1e+02 Score=14.68 Aligned_cols=22 Identities=9% Similarity=0.357 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy7005 43 VFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~pe 64 (88)
...+|.+..+++.++.++.-.|
T Consensus 5 ~l~~Y~ig~~is~~iT~flskD 26 (55)
T PF10753_consen 5 ILIFYAIGAVISALITFFLSKD 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666666666666665555
No 291
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=23.44 E-value=43 Score=18.79 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=10.4
Q ss_pred cCCCCCHHHHHHHHhc
Q psy7005 64 ETEGKTLHEIELHFKQ 79 (88)
Q Consensus 64 et~~~~~~~~~~~~~~ 79 (88)
|.||.+-+||++.+++
T Consensus 31 ~sKGLt~~EI~~al~~ 46 (136)
T PF04695_consen 31 ESKGLTEEEIDEALGR 46 (136)
T ss_dssp HHCT--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHh
Confidence 4578888999887754
No 292
>PHA02975 hypothetical protein; Provisional
Probab=23.10 E-value=1.2e+02 Score=15.20 Aligned_cols=10 Identities=0% Similarity=-0.044 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy7005 41 HGVFFLYGSC 50 (88)
Q Consensus 41 ~~~~~~~~~~ 50 (88)
.|..++...+
T Consensus 43 ~~~~~ii~i~ 52 (69)
T PHA02975 43 LSIILIIFII 52 (69)
T ss_pred hHHHHHHHHH
Confidence 3334443333
No 293
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=23.01 E-value=2.7e+02 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFL 32 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~ 32 (88)
.|..+...++++.|+..++.+.++.
T Consensus 125 rRT~~fc~vYf~aW~~dll~p~~~~ 149 (642)
T PF11696_consen 125 RRTAAFCAVYFIAWLLDLLVPAFFA 149 (642)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444433
No 294
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.89 E-value=3.2e+02 Score=20.18 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhcc
Q psy7005 49 SCSVFGLIYLYIWLPE 64 (88)
Q Consensus 49 ~~~~~~~~~~~~~~pe 64 (88)
++.+.+=+++++|+|-
T Consensus 81 ~~~~~~d~~~~~~~p~ 96 (697)
T PF09726_consen 81 CIAFTSDLICLFFIPV 96 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333445555553
No 295
>CHL00024 psbI photosystem II protein I
Probab=22.81 E-value=85 Score=13.51 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q psy7005 47 YGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 47 ~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+..+..+..++.+-+++...++
T Consensus 9 y~vV~ffvsLFifGFlsnDp~R 30 (36)
T CHL00024 9 YTVVIFFVSLFIFGFLSNDPGR 30 (36)
T ss_pred hhHHHHHHHHHHccccCCCCCC
Confidence 3333444444555555554443
No 296
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=22.68 E-value=1.2e+02 Score=15.11 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 35 HMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
..--||..++++-..+.++..-++-..+||...
T Consensus 25 lkGag~Aav~~~~~~~~l~~~~~iG~~LPe~s~ 57 (67)
T PF11511_consen 25 LKGAGYAAVFFLGLWFLLVALYFIGLLLPERSR 57 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTCS
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 333344434433333444444455577888643
No 297
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=22.59 E-value=3.2e+02 Score=20.16 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Q psy7005 22 ALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEI 73 (88)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 73 (88)
+...+...++..++-..+|..++...+...+...+ .+.+.|-++.+..+.+
T Consensus 275 iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~-~~~~~~~l~~~~~~~~ 325 (709)
T COG2274 275 IIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI-TLIFQPLLRRKTRKLI 325 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444455555555556665444444443333333 3344566665554443
No 298
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.52 E-value=2.3e+02 Score=18.32 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 40 LHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
|++.|++..+++++.+++.++++..
T Consensus 294 ~~~Gy~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 294 WPYGYPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666655543
No 299
>PRK10133 L-fucose transporter; Provisional
Probab=22.40 E-value=2.5e+02 Score=18.76 Aligned_cols=33 Identities=21% Similarity=-0.033 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy7005 12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVF 44 (88)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (88)
..++.....+++.++..+....+.++++.+...
T Consensus 296 ~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l 328 (438)
T PRK10133 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 345555666667777777777777777655443
No 300
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.25 E-value=1.9e+02 Score=17.33 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.6
Q ss_pred hccCCC
Q psy7005 62 LPETEG 67 (88)
Q Consensus 62 ~pet~~ 67 (88)
+|..-+
T Consensus 170 lp~~in 175 (206)
T PF06570_consen 170 LPPVIN 175 (206)
T ss_pred ccccCC
Confidence 454433
No 301
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=21.67 E-value=2.8e+02 Score=19.02 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005 10 GIASGLVATVAYALAFATAKTFLDLHMRIGL 40 (88)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (88)
+...|+.-..+-+.+..+++.+|.+.+++|.
T Consensus 292 ~~~igi~R~~gav~Gl~gT~~~p~l~~riGl 322 (432)
T PF06963_consen 292 PSVIGIFRGLGAVFGLLGTWVYPWLMKRIGL 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667777778888999999999988885
No 302
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=21.61 E-value=2.2e+02 Score=17.75 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7005 17 ATVAYALAFATAKTFL 32 (88)
Q Consensus 17 ~~~~~~~~~~~~~~~~ 32 (88)
.....+.+++...+||
T Consensus 114 ~~~~~~~~v~a~~lFP 129 (224)
T PF03839_consen 114 IGALLLVGVIAICLFP 129 (224)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333444444444444
No 303
>KOG4606|consensus
Probab=21.20 E-value=1.5e+02 Score=16.29 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=2.9
Q ss_pred ccCCCCC
Q psy7005 63 PETEGKT 69 (88)
Q Consensus 63 pet~~~~ 69 (88)
|||...+
T Consensus 54 pet~~vp 60 (126)
T KOG4606|consen 54 PETQKVP 60 (126)
T ss_pred cceeeee
Confidence 4444333
No 304
>PTZ00370 STEVOR; Provisional
Probab=20.90 E-value=2.5e+02 Score=18.30 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=9.5
Q ss_pred HHHHHHHHhccCCCCCHH
Q psy7005 54 GLIYLYIWLPETEGKTLH 71 (88)
Q Consensus 54 ~~~~~~~~~pet~~~~~~ 71 (88)
.++.++.++-..|..+.+
T Consensus 270 vliilYiwlyrrRK~swk 287 (296)
T PTZ00370 270 VLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHhhcchhH
Confidence 334445555566666654
No 305
>KOG3626|consensus
Probab=20.78 E-value=3.7e+02 Score=20.10 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 44 FFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
|++.+.+..+..+ .+++.|.+..++
T Consensus 325 FLi~g~~~~~~a~-p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 325 FLICGALLLFSAV-PLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHHHH-HHHhCcccCccc
Confidence 4444444444444 456678876654
No 306
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.68 E-value=1.7e+02 Score=16.11 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHH----HHHHHhccCCCCCHHHH
Q psy7005 8 GRGIASGLVATVAYALAFATAKTFLDLHMR----IGLHGVFFLYGSCSVFGLI----YLYIWLPETEGKTLHEI 73 (88)
Q Consensus 8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~pet~~~~~~~~ 73 (88)
.|..+.++...+.-+..++...+. .... ..-.+.+++.++++++=.. ..+.....-+|-+.+++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~--~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLL--FFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 566666655554433333333221 1222 1223566666666554333 34455666677666554
No 307
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=20.58 E-value=2.8e+02 Score=18.59 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=23.0
Q ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005 4 II-PKGRGIASGLVATVAYALAFATAKTFLDLH 35 (88)
Q Consensus 4 ~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (88)
.| ..+|-.++|+...+.-..+.+..-+.|++.
T Consensus 89 tfGl~mryLGvSLG~sI~lGl~~~~GTlippi~ 121 (344)
T PF06379_consen 89 TFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIF 121 (344)
T ss_pred hHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHH
Confidence 35 778888888888777766666666666664
No 308
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.29 E-value=2.3e+02 Score=18.48 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=6.6
Q ss_pred HHHHHHhccCCCCCH
Q psy7005 56 IYLYIWLPETEGKTL 70 (88)
Q Consensus 56 ~~~~~~~pet~~~~~ 70 (88)
++++.++-..|..+.
T Consensus 276 iiLYiWlyrrRK~sw 290 (295)
T TIGR01478 276 IILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHhhcccc
Confidence 334444544444443
Done!