Query psy7005
Match_columns 88
No_of_seqs 116 out of 1264
Neff 10.2
Searched_HMMs 29240
Date Sat Aug 17 00:24:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 4.8E-19 1.6E-23 113.1 7.5 85 2-86 396-487 (491)
2 1pw4_A Glycerol-3-phosphate tr 98.2 2.5E-06 8.4E-11 53.7 5.4 66 2-67 145-212 (451)
3 2cfq_A Lactose permease; trans 98.1 2.5E-06 8.5E-11 53.9 3.6 69 2-70 338-408 (417)
4 1pw4_A Glycerol-3-phosphate tr 97.9 4.2E-06 1.4E-10 52.6 1.7 60 2-61 372-433 (451)
5 4aps_A DI-OR tripeptide H+ sym 97.9 8.3E-05 2.8E-09 47.5 7.7 63 2-64 134-199 (491)
6 2gfp_A EMRD, multidrug resista 97.8 2.5E-06 8.7E-11 52.7 -0.1 67 2-68 114-181 (375)
7 2xut_A Proton/peptide symporte 97.5 3.2E-05 1.1E-09 49.8 1.5 71 2-72 431-513 (524)
8 3o7q_A L-fucose-proton symport 97.4 0.00032 1.1E-08 43.9 5.6 66 2-67 143-236 (438)
9 2xut_A Proton/peptide symporte 97.3 0.00043 1.5E-08 44.6 5.1 59 2-60 135-197 (524)
10 4aps_A DI-OR tripeptide H+ sym 97.2 9.9E-05 3.4E-09 47.1 1.5 66 2-68 412-478 (491)
11 3o7q_A L-fucose-proton symport 96.2 0.014 4.8E-07 36.5 5.5 50 3-54 374-425 (438)
12 4gc0_A D-xylose-proton symport 94.8 0.088 3E-06 33.4 5.8 63 2-65 152-223 (491)
13 2gfp_A EMRD, multidrug resista 85.5 0.67 2.3E-05 28.3 2.8 40 6-45 321-360 (375)
14 2dw3_A Intrinsic membrane prot 34.5 44 0.0015 16.3 5.9 33 35-67 27-59 (77)
15 1dx7_A Light-harvesting protei 28.5 43 0.0015 14.8 1.8 21 43-63 26-46 (48)
16 1nkz_B Light-harvesting protei 27.9 44 0.0015 14.3 3.2 21 43-63 18-38 (41)
17 3ff5_A PEX14P, peroxisomal bio 26.7 29 0.00099 15.8 1.1 14 65-78 39-52 (54)
18 4ev6_A Magnesium transport pro 26.6 65 0.0022 19.9 3.0 24 40-63 311-334 (339)
19 1lgh_B LH II, B800/850, light 25.5 52 0.0018 14.3 3.2 21 43-63 23-43 (45)
20 2jp3_A FXYD domain-containing 22.8 74 0.0025 15.1 2.1 18 40-57 17-34 (67)
21 2w84_A Peroxisomal membrane pr 22.6 37 0.0013 16.3 1.1 16 64-79 43-58 (70)
22 2iub_A CORA, divalent cation t 21.6 63 0.0021 20.2 2.3 24 40-63 335-358 (363)
23 4aw6_A CAAX prenyl protease 1 21.1 1.9E+02 0.0065 19.2 6.8 24 33-56 187-210 (482)
24 3arc_I Photosystem II reaction 20.5 63 0.0022 13.4 3.0 21 46-66 8-28 (38)
25 1g1s_C PSGL-1 peptide, PSGL-1; 20.3 30 0.001 13.1 0.4 10 60-69 11-20 (28)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=4.8e-19 Score=113.09 Aligned_cols=85 Identities=24% Similarity=0.426 Sum_probs=69.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR------IGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIE 74 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~ 74 (88)
+|+| +++|++++|++.+.+|+++++.++++|.+.+. .++.+.+++++++++++.++.++++|||||+++||+|
T Consensus 396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 6999 99999999999999999999999999987543 3445688999999999999999999999999999999
Q ss_pred HHHhcCcchhhc
Q psy7005 75 LHFKQKKSKVVQ 86 (88)
Q Consensus 75 ~~~~~~~~~~~~ 86 (88)
+.++++.+++++
T Consensus 476 ~~f~~~~~~~~~ 487 (491)
T 4gc0_A 476 ALWEPETKKTQQ 487 (491)
T ss_dssp GGTC--------
T ss_pred HHhCCCCccccc
Confidence 999877665554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.21 E-value=2.5e-06 Score=53.70 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=58.6
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+ |++.+++.+...++..+..++++||+..
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 5788 8999999999999999999999999998888888 9999999998888888877788888754
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.10 E-value=2.5e-06 Score=53.90 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=57.3
Q ss_pred Cccc-hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005 2 GNII-PKGRGIASGLV-ATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL 70 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 70 (88)
+|.+ ++.|++++++. ...+++++.+.|.+.+.+.+..|+...|.+.+...+++.+..++..||++..++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 5778 99999999995 677889999999999999888887778888888888887777777888776554
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.88 E-value=4.2e-06 Score=52.64 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=52.3
Q ss_pred Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW 61 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (88)
.|.+ .+.|+++.|+......+ +..+.+.+.+.+.+..|+...+++.+++.+++.+..++.
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 88999999999999999 999999999999999998888888888888877766554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.87 E-value=8.3e-05 Score=47.45 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred Cccc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005 2 GNII-PKG--RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE 64 (88)
Q Consensus 2 ~E~~-~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 64 (88)
+|++ .+. |+.+.++......++..+.+.+.+.+.+..+|++.|++.+....+..+...+..|+
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4677 767 77788888899999999999999999999999999998877777766665554444
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.82 E-value=2.5e-06 Score=52.72 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=56.7
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+.+||++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 4667 788999999999999999999999999888888999999988888887777666778887543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.49 E-value=3.2e-05 Score=49.80 Aligned_cols=71 Identities=4% Similarity=0.003 Sum_probs=44.9
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ch-HHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI----------GL-HGVFFLYGSCSVFGLIYLYIWLPETEGKT 69 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 69 (88)
+|.. ++.|++++|+....+++++.+.+.+.+.+.+.. +. ...++++++++++..+..+++.++++.++
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3567 789999999999999999999999998876521 11 22377777777877777777778877665
Q ss_pred HHH
Q psy7005 70 LHE 72 (88)
Q Consensus 70 ~~~ 72 (88)
.++
T Consensus 511 ~~~ 513 (524)
T 2xut_A 511 HYR 513 (524)
T ss_dssp ---
T ss_pred hhh
Confidence 543
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.44 E-value=0.00032 Score=43.93 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=50.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------------------hHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH-MRIG-------------------------LHGVFFLYGSCSVFG 54 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~~~~~~~~~ 54 (88)
+|.+ .+.|+++.++......++..+.+.+.+.+. +..+ |++.+++.+....+.
T Consensus 143 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 222 (438)
T 3o7q_A 143 TVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLV 222 (438)
T ss_dssp HHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5778 899999999999999999999999988887 4443 888887777766665
Q ss_pred HHHHHH-HhccCCC
Q psy7005 55 LIYLYI-WLPETEG 67 (88)
Q Consensus 55 ~~~~~~-~~pet~~ 67 (88)
.+..++ ..||++.
T Consensus 223 ~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 223 ALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHCCCCCCTT
T ss_pred HHHHHHHcCCcccc
Confidence 554433 3566543
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.31 E-value=0.00043 Score=44.56 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=46.2
Q ss_pred Cccc-hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005 2 GNII-PKGRGIASGL---VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI 60 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (88)
+|.+ .+.|+++.++ ......++..+.+.+.+.+.+..+|++.|++.+...++..+...+
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 8888766655 888888889999988888888889999998888777666555443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.23 E-value=9.9e-05 Score=47.09 Aligned_cols=66 Identities=12% Similarity=-0.047 Sum_probs=49.0
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK 68 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 68 (88)
.|.+ .+.|++++|+....+++++.+.+.+.+.+.+ .+..+.+.+++..+++..+..+++.++++++
T Consensus 412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 8899999999999999999999999876654 3556688888888888888887777777654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.16 E-value=0.014 Score=36.48 Aligned_cols=50 Identities=6% Similarity=-0.024 Sum_probs=38.6
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHH
Q psy7005 3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFG 54 (88)
Q Consensus 3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 54 (88)
|.+ ++ |+.+.++.. .++++..+.+.+.+.+.+..| ++..+.+.+.+.++.
T Consensus 374 ~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 374 KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 556 55 888888877 778999999999999999988 777777655444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=94.83 E-value=0.088 Score=33.43 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=37.4
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005 2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI--------GLHGVFFLYGSCSVFGLIYLYIWLPET 65 (88)
Q Consensus 2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pet 65 (88)
+|.. .+.|+...++......++..+............ .|++.+.+.. ...+......+++||+
T Consensus 152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC-IPALLFLMLLYTVPES 223 (491)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH-HHHHHHHHHGGGSCCC
T ss_pred HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh-hhhhhhhhhhhcCCCC
Confidence 6888 999999999887776666665555544433221 2333333333 3333334455678997
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=85.46 E-value=0.67 Score=28.31 Aligned_cols=40 Identities=18% Similarity=-0.104 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy7005 6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFF 45 (88)
Q Consensus 6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (88)
++.|+++.|+....+.++..+.+.+.+.+.+..++...+.
T Consensus 321 p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 321 PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4679999999999999999999999888877666554443
No 14
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=34.51 E-value=44 Score=16.34 Aligned_cols=33 Identities=18% Similarity=0.009 Sum_probs=17.1
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005 35 HMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG 67 (88)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 67 (88)
..--||..++++-..+.++..-++-..+||...
T Consensus 27 lkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 27 MKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 333455444444333444444456678898654
No 15
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=28.49 E-value=43 Score=14.81 Aligned_cols=21 Identities=24% Similarity=0.787 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7005 43 VFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+..|.++.++.-++.+.+-|
T Consensus 26 ~~~~F~~iA~vAH~l~w~wrP 46 (48)
T 1dx7_A 26 GLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHTTHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 566777777777777776543
No 16
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=27.89 E-value=44 Score=14.25 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7005 43 VFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+..|.++.++.-++.+.+-|
T Consensus 18 ~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 18 GTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 456677777777777776544
No 17
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=26.66 E-value=29 Score=15.78 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=8.8
Q ss_pred CCCCCHHHHHHHHh
Q psy7005 65 TEGKTLHEIELHFK 78 (88)
Q Consensus 65 t~~~~~~~~~~~~~ 78 (88)
.||.+-+||+..+.
T Consensus 39 sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 39 KKGLTDEEIDLAFQ 52 (54)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 46667777766553
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.57 E-value=65 Score=19.88 Aligned_cols=24 Identities=13% Similarity=0.042 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 40 LHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
|.+.|++..+++++..+..++++.
T Consensus 311 ~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 311 NPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444443
No 19
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=25.54 E-value=52 Score=14.33 Aligned_cols=21 Identities=14% Similarity=0.509 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7005 43 VFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p 63 (88)
.+..|.++.++.-++.+.+-|
T Consensus 23 ~~~~F~~iA~vAH~L~~~wrP 43 (45)
T 1lgh_B 23 TFSAFIILAAVAHVLVWVWKP 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 456677777777777776544
No 20
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.76 E-value=74 Score=15.11 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy7005 40 LHGVFFLYGSCSVFGLIY 57 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~ 57 (88)
.+..-++++++.++..+.
T Consensus 17 LRigGLifA~vLfi~GI~ 34 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIA 34 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred heecchhhHHHHHHHHHH
Confidence 344445555544444443
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=22.64 E-value=37 Score=16.32 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=12.0
Q ss_pred cCCCCCHHHHHHHHhc
Q psy7005 64 ETEGKTLHEIELHFKQ 79 (88)
Q Consensus 64 et~~~~~~~~~~~~~~ 79 (88)
+.||.+-+||+..+++
T Consensus 43 ~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 3578888888887754
No 22
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.63 E-value=63 Score=20.20 Aligned_cols=24 Identities=0% Similarity=-0.085 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005 40 LHGVFFLYGSCSVFGLIYLYIWLP 63 (88)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p 63 (88)
|.+.|++..+++++..+..++++.
T Consensus 335 ~~~Gy~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 335 WKWGYPVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp ----CHHHHHHHHHHHHHHHTTTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 23
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=21.07 E-value=1.9e+02 Score=19.20 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=11.6
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHH
Q psy7005 33 DLHMRIGLHGVFFLYGSCSVFGLI 56 (88)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ 56 (88)
++.+..|..|..+.++...++..+
T Consensus 187 ~ii~~~g~~~wl~~w~~~~~~~l~ 210 (482)
T 4aw6_A 187 YIIKIGGDYFFIYAWLFTLVVSLV 210 (482)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHH
Confidence 456666644444444444444433
No 24
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.52 E-value=63 Score=13.45 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy7005 46 LYGSCSVFGLIYLYIWLPETE 66 (88)
Q Consensus 46 ~~~~~~~~~~~~~~~~~pet~ 66 (88)
++..+..+..++.+-+++...
T Consensus 8 Vy~vV~ffvsLFiFGfLsnDP 28 (38)
T 3arc_I 8 VYIVVTFFVLLFVFGFLSGDP 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHHTTGG
T ss_pred ehhHHHHHHHHHHccccCCCC
Confidence 344444444455555555543
No 25
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=20.28 E-value=30 Score=13.09 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=6.6
Q ss_pred HHhccCCCCC
Q psy7005 60 IWLPETEGKT 69 (88)
Q Consensus 60 ~~~pet~~~~ 69 (88)
=|+|||....
T Consensus 11 dflpetepp~ 20 (28)
T 1g1s_C 11 DFLPETEPPR 20 (28)
T ss_pred cccccCCCCc
Confidence 3688887543
Done!