RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7005
         (88 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.006
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 2   GNIIPKGRGIASGLVATVAYALAFATAKT---FLDLHMRIGLHGVFFLYGSCS 51
           G +    +G A+G    +  A+A A   +   F     +  +  +FF+ G   
Sbjct: 261 GELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFI-GVRC 310


>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase;
           2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
          Length = 283

 Score = 26.5 bits (58), Expect = 1.2
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 5   IPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLH-GVFFLYGSCSVFGLIYLYIWLP 63
           IP  +     +V     A A     T ++L   +          G+CS +G I       
Sbjct: 80  IPTAKEGRYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNV 139

Query: 64  ETEGKTLHEI 73
            T  K++ + 
Sbjct: 140 -TGSKSVRDF 148


>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
           glycoprotein, laminin EGF-like domain, extracellular
           matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
           musculus}
          Length = 608

 Score = 25.1 bits (54), Expect = 4.0
 Identities = 4/30 (13%), Positives = 9/30 (30%)

Query: 49  SCSVFGLIYLYIWLPETEGKTLHEIELHFK 78
           +    G  Y  +  P      +  +   F+
Sbjct: 205 TIQFDGEGYALVSRPIRWYPNISTVMFKFR 234


>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
           domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
           PDB: 1ybu_A*
          Length = 184

 Score = 24.5 bits (54), Expect = 4.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 16  VATVAYALAFATAKTFLDLHMRIGLH 41
            A +A A     A   L + +RIG+H
Sbjct: 78  SAAIACADDIVDAVAALGIEVRIGIH 103


>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini
           hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A
           {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A*
           3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A*
           1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
          Length = 748

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHG 42
           K + +ASGL  +   + A+A A TF     R G +G
Sbjct: 467 KAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANG 502


>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
          structure initiative, midwest CENT structural genomics,
          MCSG; 1.63A {Streptococcus pneumoniae}
          Length = 154

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 50 CSVFGLIYLYIWLPETEGKTLHEIELHF 77
               L ++     E +G + H IE H+
Sbjct: 70 AQAGQLAFVVENRFEVDGVSYHNIEFHY 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,321,187
Number of extensions: 67273
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 11
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)