Query psy7008
Match_columns 101
No_of_seqs 107 out of 1847
Neff 10.3
Searched_HMMs 46136
Date Sat Aug 17 00:27:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.6 5.6E-15 1.2E-19 99.7 6.0 97 4-100 308-407 (485)
2 KOG0254|consensus 99.4 4.4E-12 9.4E-17 86.5 8.2 96 5-100 333-434 (513)
3 KOG0253|consensus 99.2 3.9E-11 8.4E-16 79.1 6.6 87 7-100 387-473 (528)
4 TIGR00887 2A0109 phosphate:H+ 99.2 2.1E-10 4.6E-15 78.1 8.1 87 11-100 345-431 (502)
5 TIGR01299 synapt_SV2 synaptic 99.1 1.1E-10 2.4E-15 82.8 5.8 88 7-101 601-688 (742)
6 PRK10077 xylE D-xylose transpo 99.0 1.9E-09 4.1E-14 72.6 8.1 91 8-100 313-403 (479)
7 PF00083 Sugar_tr: Sugar (and 99.0 3.5E-12 7.5E-17 85.2 -5.8 96 6-101 291-389 (451)
8 KOG0252|consensus 98.9 7.6E-11 1.7E-15 79.2 -2.2 92 8-101 355-446 (538)
9 TIGR00887 2A0109 phosphate:H+ 98.9 6.4E-09 1.4E-13 70.9 6.6 94 5-100 60-154 (502)
10 TIGR00898 2A0119 cation transp 98.8 1.7E-08 3.7E-13 68.5 7.4 89 7-100 361-449 (505)
11 KOG0255|consensus 98.8 1.7E-08 3.6E-13 69.1 6.3 88 5-99 122-209 (521)
12 PRK10077 xylE D-xylose transpo 98.8 2.2E-08 4.7E-13 67.5 6.7 95 5-100 59-159 (479)
13 PRK10406 alpha-ketoglutarate t 98.8 2E-08 4.3E-13 67.3 5.6 87 12-99 74-162 (432)
14 PRK10642 proline/glycine betai 98.8 4.1E-08 9E-13 66.8 7.1 85 11-100 67-157 (490)
15 TIGR00898 2A0119 cation transp 98.8 3.2E-08 6.8E-13 67.3 6.5 89 5-100 131-219 (505)
16 TIGR00880 2_A_01_02 Multidrug 98.8 2.5E-08 5.3E-13 56.2 5.1 85 9-100 6-90 (141)
17 TIGR00879 SP MFS transporter, 98.7 8.4E-08 1.8E-12 63.8 8.2 95 6-100 324-422 (481)
18 TIGR01299 synapt_SV2 synaptic 98.7 2.3E-08 4.9E-13 71.3 5.7 89 5-100 206-294 (742)
19 PRK10406 alpha-ketoglutarate t 98.7 7E-08 1.5E-12 64.7 7.8 89 10-101 288-376 (432)
20 PRK09952 shikimate transporter 98.7 6.8E-08 1.5E-12 64.9 7.6 88 10-100 295-382 (438)
21 TIGR00879 SP MFS transporter, 98.7 4.5E-08 9.8E-13 65.1 6.7 92 5-100 75-166 (481)
22 TIGR00881 2A0104 phosphoglycer 98.7 3.7E-08 8.1E-13 63.8 5.9 88 6-100 35-122 (379)
23 TIGR00893 2A0114 d-galactonate 98.7 3.7E-08 8.1E-13 63.9 5.3 89 5-100 33-121 (399)
24 KOG0569|consensus 98.7 1E-07 2.2E-12 65.1 7.3 92 4-99 63-154 (485)
25 PRK05122 major facilitator sup 98.7 8.6E-08 1.9E-12 63.3 6.9 94 6-100 56-151 (399)
26 PRK10642 proline/glycine betai 98.7 1E-07 2.3E-12 64.9 7.3 89 8-100 293-381 (490)
27 TIGR00891 2A0112 putative sial 98.7 8.6E-08 1.9E-12 62.9 6.6 88 6-100 52-139 (405)
28 TIGR02332 HpaX 4-hydroxyphenyl 98.7 5.6E-08 1.2E-12 64.9 5.8 88 6-100 48-135 (412)
29 PRK09556 uhpT sugar phosphate 98.7 1.5E-07 3.2E-12 63.7 7.8 93 6-100 69-161 (467)
30 TIGR00900 2A0121 H+ Antiporter 98.7 9E-08 2E-12 61.8 6.5 93 6-100 39-131 (365)
31 TIGR00711 efflux_EmrB drug res 98.7 6.7E-08 1.5E-12 65.1 6.1 90 4-100 40-129 (485)
32 PRK09952 shikimate transporter 98.7 6.3E-08 1.4E-12 65.1 5.9 87 12-99 75-163 (438)
33 KOG0254|consensus 98.7 8.8E-08 1.9E-12 65.7 6.6 89 4-99 92-180 (513)
34 cd06174 MFS The Major Facilita 98.7 8.1E-08 1.8E-12 61.5 6.1 89 5-100 38-126 (352)
35 PRK12307 putative sialic acid 98.6 1.5E-07 3.2E-12 62.6 7.0 88 6-100 58-145 (426)
36 PRK12382 putative transporter; 98.6 1.4E-07 3.1E-12 62.2 6.8 94 6-100 56-151 (392)
37 PRK15075 citrate-proton sympor 98.6 3.5E-07 7.7E-12 61.4 8.2 90 7-100 280-370 (434)
38 PRK11551 putative 3-hydroxyphe 98.6 1.2E-07 2.5E-12 62.8 5.8 88 6-100 55-142 (406)
39 TIGR00895 2A0115 benzoate tran 98.6 1.6E-07 3.4E-12 61.4 6.0 88 6-100 57-144 (398)
40 PRK03699 putative transporter; 98.6 2.8E-07 6.1E-12 61.0 6.9 86 7-99 48-133 (394)
41 PRK15075 citrate-proton sympor 98.6 2E-07 4.3E-12 62.5 6.2 81 15-100 70-156 (434)
42 PRK11273 glpT sn-glycerol-3-ph 98.6 2E-07 4.3E-12 62.9 6.2 91 6-100 68-159 (452)
43 PRK03545 putative arabinose tr 98.6 2.6E-07 5.6E-12 61.1 6.3 86 8-100 51-136 (390)
44 PRK08633 2-acyl-glycerophospho 98.6 2.4E-07 5.2E-12 68.2 6.7 90 7-100 53-142 (1146)
45 PRK10213 nepI ribonucleoside t 98.6 2E-07 4.4E-12 61.9 5.7 86 8-100 62-147 (394)
46 PF07690 MFS_1: Major Facilita 98.6 2.6E-07 5.6E-12 59.5 6.1 89 5-100 36-124 (352)
47 PRK11195 lysophospholipid tran 98.5 1.1E-07 2.4E-12 63.2 4.3 85 6-100 43-127 (393)
48 TIGR00883 2A0106 metabolite-pr 98.5 8E-07 1.7E-11 57.9 8.3 91 7-100 261-351 (394)
49 TIGR00710 efflux_Bcr_CflA drug 98.5 1.4E-07 3.1E-12 61.6 4.8 88 6-100 45-132 (385)
50 PRK10473 multidrug efflux syst 98.5 2.1E-07 4.5E-12 61.4 5.5 87 7-100 44-130 (392)
51 PRK11663 regulatory protein Uh 98.5 2.7E-07 5.8E-12 62.0 5.7 88 6-100 63-150 (434)
52 PRK15462 dipeptide/tripeptide 98.5 8E-07 1.7E-11 61.0 7.9 87 8-100 52-141 (493)
53 KOG1330|consensus 98.5 2.4E-07 5.3E-12 62.6 5.2 90 4-100 71-160 (493)
54 KOG0252|consensus 98.5 4E-07 8.7E-12 61.7 6.2 94 4-98 87-181 (538)
55 PRK11102 bicyclomycin/multidru 98.5 2.7E-07 5.8E-12 60.4 5.3 88 6-100 31-118 (377)
56 PRK12307 putative sialic acid 98.5 7.6E-07 1.7E-11 59.3 7.4 87 8-100 273-360 (426)
57 TIGR00886 2A0108 nitrite extru 98.5 7.3E-07 1.6E-11 58.0 7.1 89 5-100 41-129 (366)
58 PRK15403 multidrug efflux syst 98.5 4.8E-07 1E-11 60.5 6.1 88 6-100 56-143 (413)
59 TIGR00897 2A0118 polyol permea 98.5 5.3E-07 1.1E-11 59.9 6.2 91 6-100 53-144 (402)
60 TIGR00894 2A0114euk Na(+)-depe 98.5 4.5E-07 9.9E-12 61.2 6.0 90 6-100 81-170 (465)
61 TIGR00890 2A0111 Oxalate/Forma 98.5 6.4E-07 1.4E-11 58.0 6.4 89 7-100 246-334 (377)
62 TIGR00891 2A0112 putative sial 98.5 1.5E-06 3.2E-11 57.1 7.8 88 7-100 280-367 (405)
63 PRK03893 putative sialic acid 98.5 5.2E-07 1.1E-11 61.2 5.8 88 6-100 60-147 (496)
64 TIGR00712 glpT glycerol-3-phos 98.5 3.4E-07 7.3E-12 61.5 4.8 92 5-100 65-157 (438)
65 TIGR00883 2A0106 metabolite-pr 98.4 5E-07 1.1E-11 58.9 5.3 84 15-100 49-135 (394)
66 PRK10054 putative transporter; 98.4 5.5E-07 1.2E-11 59.9 5.5 87 7-100 49-135 (395)
67 PLN00028 nitrate transmembrane 98.4 1E-06 2.2E-11 60.0 6.9 86 7-100 77-162 (476)
68 PRK10091 MFS transport protein 98.4 1E-06 2.2E-11 58.2 6.6 89 5-100 42-130 (382)
69 PRK11551 putative 3-hydroxyphe 98.4 1.4E-06 3E-11 57.7 7.0 88 6-100 260-347 (406)
70 PRK15402 multidrug efflux syst 98.4 1.1E-06 2.3E-11 58.4 6.1 86 7-99 54-139 (406)
71 PF00083 Sugar_tr: Sugar (and 98.4 7.6E-09 1.7E-13 69.3 -4.2 92 5-100 50-141 (451)
72 TIGR00901 2A0125 AmpG-related 98.4 1.6E-06 3.6E-11 56.5 6.8 88 12-100 256-348 (356)
73 PRK09705 cynX putative cyanate 98.4 2.1E-06 4.6E-11 57.0 7.0 87 6-100 49-135 (393)
74 PRK14995 methyl viologen resis 98.4 1.6E-06 3.4E-11 59.3 6.2 89 5-100 45-134 (495)
75 PRK10504 putative transporter; 98.4 1.3E-06 2.9E-11 58.9 5.8 87 7-100 51-137 (471)
76 PRK03893 putative sialic acid 98.4 3.6E-06 7.8E-11 57.1 7.9 90 6-100 316-405 (496)
77 cd06174 MFS The Major Facilita 98.3 1.9E-06 4.2E-11 55.2 6.3 88 6-100 216-304 (352)
78 PRK11646 multidrug resistance 98.3 1.7E-06 3.8E-11 57.6 5.9 84 10-100 55-138 (400)
79 KOG2615|consensus 98.3 3.9E-06 8.4E-11 56.0 7.1 87 6-100 73-159 (451)
80 TIGR00903 2A0129 major facilit 98.3 2.2E-06 4.8E-11 56.7 6.0 87 6-100 31-117 (368)
81 TIGR00889 2A0110 nucleoside tr 98.3 1.9E-06 4E-11 57.9 5.7 90 8-100 258-347 (418)
82 TIGR00885 fucP L-fucose:H+ sym 98.3 2.7E-06 5.9E-11 57.0 6.4 90 5-99 42-132 (410)
83 PRK10207 dipeptide/tripeptide 98.3 3.9E-06 8.5E-11 57.6 7.2 81 9-95 58-139 (489)
84 TIGR00890 2A0111 Oxalate/Forma 98.3 1.7E-06 3.8E-11 56.0 5.1 87 6-100 43-129 (377)
85 PRK09874 drug efflux system pr 98.3 3.1E-06 6.8E-11 55.9 6.0 85 8-100 61-145 (408)
86 TIGR00895 2A0115 benzoate tran 98.2 5.5E-06 1.2E-10 54.1 6.3 88 6-100 290-377 (398)
87 PF06609 TRI12: Fungal trichot 98.2 4E-06 8.6E-11 58.8 5.8 88 4-99 81-168 (599)
88 PRK09556 uhpT sugar phosphate 98.2 6.3E-06 1.4E-10 55.9 6.4 89 7-100 300-388 (467)
89 COG2814 AraJ Arabinose efflux 98.2 8.2E-06 1.8E-10 54.6 6.8 89 5-100 52-140 (394)
90 PRK03633 putative MFS family t 98.2 5.7E-06 1.2E-10 54.6 5.8 89 5-100 45-133 (381)
91 TIGR00924 yjdL_sub1_fam amino 98.2 1.4E-05 3.1E-10 54.6 7.6 87 7-100 54-144 (475)
92 PRK10489 enterobactin exporter 98.2 3.9E-06 8.5E-11 55.9 4.7 92 6-100 57-149 (417)
93 PRK11652 emrD multidrug resist 98.1 5.9E-06 1.3E-10 54.6 5.4 87 6-99 48-134 (394)
94 TIGR00900 2A0121 H+ Antiporter 98.1 9.1E-06 2E-10 52.5 6.0 88 7-100 253-340 (365)
95 PRK06814 acylglycerophosphoeth 98.1 1E-05 2.3E-10 60.0 6.9 89 8-100 59-147 (1140)
96 PRK11043 putative transporter; 98.1 1E-05 2.3E-10 53.6 6.2 86 6-98 46-131 (401)
97 PRK10133 L-fucose transporter; 98.1 1.4E-05 3E-10 54.1 6.7 89 5-97 65-153 (438)
98 PRK09528 lacY galactoside perm 98.1 2.5E-05 5.4E-10 52.2 7.6 84 9-99 270-353 (420)
99 TIGR00896 CynX cyanate transpo 98.1 2.2E-05 4.8E-10 51.2 6.9 87 5-100 39-125 (355)
100 TIGR00806 rfc RFC reduced fola 98.1 1.3E-05 2.8E-10 55.1 5.8 88 5-100 66-153 (511)
101 PRK15034 nitrate/nitrite trans 98.1 2.6E-05 5.6E-10 53.4 7.1 90 7-100 76-166 (462)
102 PRK05122 major facilitator sup 98.0 2.6E-05 5.7E-10 51.6 6.9 86 8-100 256-341 (399)
103 PF05977 MFS_3: Transmembrane 98.0 2.1E-05 4.6E-10 54.5 6.3 92 7-100 51-142 (524)
104 PRK12382 putative transporter; 98.0 2.2E-05 4.7E-10 51.9 5.6 85 9-100 257-341 (392)
105 TIGR00711 efflux_EmrB drug res 98.0 2.7E-05 5.8E-10 52.6 6.1 90 7-100 297-387 (485)
106 TIGR00899 2A0120 sugar efflux 98.0 4.3E-05 9.3E-10 49.9 6.9 83 8-97 40-123 (375)
107 TIGR00892 2A0113 monocarboxyla 98.0 1.9E-05 4E-10 53.6 5.2 84 9-100 62-146 (455)
108 PRK15011 sugar efflux transpor 98.0 3.9E-05 8.5E-10 50.9 6.6 83 10-100 261-343 (393)
109 TIGR00893 2A0114 d-galactonate 98.0 4.4E-05 9.5E-10 49.6 6.6 93 6-100 256-350 (399)
110 KOG0255|consensus 97.9 3.7E-05 8E-10 52.8 6.3 90 7-100 356-445 (521)
111 TIGR00903 2A0129 major facilit 97.9 8.7E-05 1.9E-09 49.2 7.6 22 80-101 299-320 (368)
112 TIGR02332 HpaX 4-hydroxyphenyl 97.9 6.1E-05 1.3E-09 50.5 6.8 87 7-100 285-372 (412)
113 TIGR00901 2A0125 AmpG-related 97.9 4.4E-05 9.6E-10 49.8 5.8 79 18-100 38-122 (356)
114 PRK11902 ampG muropeptide tran 97.9 3.4E-05 7.4E-10 51.3 5.2 81 15-100 46-133 (402)
115 TIGR00886 2A0108 nitrite extru 97.9 7.1E-05 1.5E-09 48.8 6.5 90 7-100 267-356 (366)
116 PRK10489 enterobactin exporter 97.8 5.7E-05 1.2E-09 50.4 5.6 87 7-100 265-351 (417)
117 PRK09584 tppB putative tripept 97.8 0.00022 4.8E-09 49.1 8.6 73 16-94 72-145 (500)
118 TIGR00899 2A0120 sugar efflux 97.8 7.7E-05 1.7E-09 48.7 5.7 80 12-99 246-325 (375)
119 PRK09874 drug efflux system pr 97.8 0.00016 3.5E-09 47.8 7.2 83 11-100 268-350 (408)
120 PRK10504 putative transporter; 97.8 0.00017 3.6E-09 48.9 7.2 87 10-100 306-392 (471)
121 PRK15034 nitrate/nitrite trans 97.8 0.00028 6E-09 48.4 8.0 82 10-92 295-376 (462)
122 COG2271 UhpC Sugar phosphate p 97.8 0.0002 4.4E-09 48.4 7.1 92 6-101 293-386 (448)
123 PTZ00207 hypothetical protein; 97.7 0.00015 3.3E-09 51.0 6.8 83 16-100 76-158 (591)
124 PRK14995 methyl viologen resis 97.7 0.00028 6.2E-09 48.4 7.6 88 9-100 303-390 (495)
125 TIGR00792 gph sugar (Glycoside 97.7 0.00022 4.7E-09 47.7 6.8 78 8-91 264-341 (437)
126 PRK11010 ampG muropeptide tran 97.7 8.9E-05 1.9E-09 50.9 5.0 80 16-100 60-146 (491)
127 PF07690 MFS_1: Major Facilita 97.7 8.1E-05 1.8E-09 47.9 4.6 90 7-100 249-338 (352)
128 PRK11273 glpT sn-glycerol-3-ph 97.7 0.00023 5E-09 48.2 6.8 88 8-100 296-386 (452)
129 TIGR00710 efflux_Bcr_CflA drug 97.7 0.0003 6.5E-09 46.0 7.1 90 7-100 248-338 (385)
130 PRK11102 bicyclomycin/multidru 97.7 0.00031 6.6E-09 46.1 6.9 38 7-44 236-273 (377)
131 PRK08633 2-acyl-glycerophospho 97.7 0.00021 4.6E-09 53.1 6.7 88 6-100 274-361 (1146)
132 TIGR00881 2A0104 phosphoglycer 97.6 0.00019 4E-09 46.6 5.7 90 7-100 258-349 (379)
133 PF06813 Nodulin-like: Nodulin 97.6 0.00049 1.1E-08 43.7 6.8 89 10-101 46-135 (250)
134 TIGR00805 oat sodium-independe 97.6 6.4E-05 1.4E-09 53.2 3.0 48 4-51 71-118 (633)
135 COG2223 NarK Nitrate/nitrite t 97.6 0.00046 1E-08 46.5 6.6 89 8-101 56-144 (417)
136 PRK11663 regulatory protein Uh 97.6 0.00035 7.6E-09 47.1 6.2 22 7-28 285-306 (434)
137 TIGR00712 glpT glycerol-3-phos 97.5 0.00073 1.6E-08 45.6 7.6 26 6-31 292-317 (438)
138 COG2271 UhpC Sugar phosphate p 97.5 0.0003 6.4E-09 47.7 5.5 87 7-100 70-156 (448)
139 TIGR00882 2A0105 oligosacchari 97.5 0.00086 1.9E-08 44.5 7.5 83 10-99 263-345 (396)
140 PLN00028 nitrate transmembrane 97.5 0.00066 1.4E-08 46.4 7.0 26 6-31 293-318 (476)
141 TIGR00902 2A0127 phenyl propri 97.5 0.0004 8.6E-09 46.0 5.7 84 9-100 248-331 (382)
142 PF13347 MFS_2: MFS/sugar tran 97.5 0.00074 1.6E-08 45.4 6.9 82 7-93 266-347 (428)
143 KOG3764|consensus 97.5 0.00034 7.3E-09 47.3 5.1 85 9-100 114-199 (464)
144 KOG2532|consensus 97.4 0.0005 1.1E-08 47.2 5.8 87 8-99 80-166 (466)
145 PRK11010 ampG muropeptide tran 97.4 0.0012 2.7E-08 45.4 7.2 87 11-100 269-355 (491)
146 TIGR00897 2A0118 polyol permea 97.4 0.0012 2.6E-08 44.0 7.0 89 8-100 264-353 (402)
147 PRK10429 melibiose:sodium symp 97.3 0.0014 3.1E-08 44.7 7.1 88 9-98 274-366 (473)
148 TIGR00882 2A0105 oligosacchari 97.3 0.0017 3.7E-08 43.1 7.3 39 6-44 43-81 (396)
149 TIGR01301 GPH_sucrose GPH fami 97.3 0.00057 1.2E-08 47.1 5.0 44 6-49 44-92 (477)
150 PRK10091 MFS transport protein 97.2 0.0012 2.6E-08 43.7 5.9 42 7-48 241-282 (382)
151 PRK03699 putative transporter; 97.2 0.002 4.4E-08 42.8 6.9 40 8-47 248-287 (394)
152 COG3104 PTR2 Dipeptide/tripept 97.2 0.0028 6.1E-08 43.8 7.5 77 12-93 72-149 (498)
153 TIGR00792 gph sugar (Glycoside 97.2 0.00044 9.6E-09 46.2 3.4 92 7-99 41-138 (437)
154 PRK03545 putative arabinose tr 97.2 0.0027 5.8E-08 42.1 6.8 85 8-100 248-332 (390)
155 PRK10473 multidrug efflux syst 97.1 0.003 6.6E-08 41.8 7.0 42 8-49 246-287 (392)
156 COG2270 Permeases of the major 97.1 0.0031 6.7E-08 42.9 6.8 87 7-100 294-380 (438)
157 PRK09705 cynX putative cyanate 97.1 0.0022 4.7E-08 42.8 6.2 43 6-48 245-287 (393)
158 PF05977 MFS_3: Transmembrane 97.1 0.0013 2.7E-08 45.9 5.2 89 5-100 258-346 (524)
159 PRK09528 lacY galactoside perm 97.1 0.0036 7.9E-08 41.9 6.9 38 6-43 51-88 (420)
160 PRK10429 melibiose:sodium symp 97.1 0.00074 1.6E-08 46.1 3.5 91 7-99 48-145 (473)
161 PF11700 ATG22: Vacuole efflux 97.1 0.0051 1.1E-07 42.5 7.5 92 7-100 323-419 (477)
162 PF03825 Nuc_H_symport: Nucleo 97.0 0.004 8.7E-08 42.0 6.7 86 9-100 251-340 (400)
163 PRK09669 putative symporter Ya 97.0 0.0056 1.2E-07 41.4 7.4 76 11-91 274-349 (444)
164 COG2211 MelB Na+/melibiose sym 96.9 0.012 2.7E-07 40.6 8.5 76 11-91 282-357 (467)
165 TIGR00896 CynX cyanate transpo 96.9 0.0038 8.3E-08 40.8 5.8 44 6-49 237-281 (355)
166 PRK11128 putative 3-phenylprop 96.9 0.0054 1.2E-07 40.6 6.3 41 9-49 248-288 (382)
167 PRK03633 putative MFS family t 96.8 0.007 1.5E-07 40.1 6.7 38 9-46 243-280 (381)
168 COG2223 NarK Nitrate/nitrite t 96.8 0.0064 1.4E-07 41.2 6.2 86 9-95 262-348 (417)
169 PRK09669 putative symporter Ya 96.8 0.00073 1.6E-08 45.7 1.8 92 6-98 50-147 (444)
170 PRK10133 L-fucose transporter; 96.7 0.017 3.6E-07 39.3 7.5 78 8-93 302-379 (438)
171 TIGR02718 sider_RhtX_FptX side 96.6 0.017 3.7E-07 38.3 7.3 29 13-41 256-284 (390)
172 PRK10054 putative transporter; 96.6 0.0065 1.4E-07 40.6 5.4 80 15-100 258-337 (395)
173 PRK11902 ampG muropeptide tran 96.6 0.016 3.4E-07 38.7 7.2 36 13-48 258-293 (402)
174 PF12832 MFS_1_like: MFS_1 lik 96.6 0.0072 1.6E-07 31.5 4.4 35 5-39 39-73 (77)
175 KOG2504|consensus 96.6 0.0083 1.8E-07 41.8 5.9 88 5-100 85-173 (509)
176 PRK15402 multidrug efflux syst 96.6 0.018 3.9E-07 38.4 7.3 40 11-50 261-300 (406)
177 PF11700 ATG22: Vacuole efflux 96.6 0.018 3.8E-07 39.9 7.3 86 5-95 74-160 (477)
178 PRK11043 putative transporter; 96.6 0.021 4.6E-07 37.9 7.5 35 11-45 248-282 (401)
179 KOG4686|consensus 96.6 0.0099 2.1E-07 39.2 5.6 87 7-101 306-392 (459)
180 PRK11462 putative transporter; 96.5 0.013 2.9E-07 40.1 6.4 34 9-42 271-304 (460)
181 PRK15011 sugar efflux transpor 96.5 0.021 4.5E-07 38.0 7.3 32 14-46 65-97 (393)
182 KOG2563|consensus 96.5 0.025 5.4E-07 39.0 7.3 94 5-99 83-178 (480)
183 TIGR00892 2A0113 monocarboxyla 96.5 0.011 2.4E-07 40.3 5.7 86 8-100 283-372 (455)
184 TIGR00889 2A0110 nucleoside tr 96.4 0.034 7.3E-07 37.6 7.7 44 5-48 42-86 (418)
185 PRK06814 acylglycerophosphoeth 96.4 0.014 2.9E-07 44.0 6.2 94 6-100 266-373 (1140)
186 TIGR01301 GPH_sucrose GPH fami 96.4 0.043 9.4E-07 38.1 8.1 91 7-98 311-417 (477)
187 PRK09584 tppB putative tripept 96.4 0.018 4E-07 39.9 6.4 93 7-100 322-421 (500)
188 PRK11646 multidrug resistance 96.3 0.042 9.1E-07 36.8 7.8 80 14-100 256-336 (400)
189 TIGR00885 fucP L-fucose:H+ sym 96.3 0.025 5.4E-07 38.2 6.6 77 12-96 280-356 (410)
190 PRK09848 glucuronide transport 96.3 0.032 7E-07 37.8 7.0 77 12-93 275-351 (448)
191 PF05978 UNC-93: Ion channel r 96.2 0.035 7.7E-07 32.9 6.2 86 6-99 42-127 (156)
192 PRK10207 dipeptide/tripeptide 96.1 0.02 4.4E-07 39.6 5.7 93 7-100 315-418 (489)
193 TIGR01272 gluP glucose/galacto 96.1 0.05 1.1E-06 35.4 7.0 39 8-46 185-223 (310)
194 COG2814 AraJ Arabinose efflux 96.1 0.039 8.5E-07 37.4 6.5 45 5-50 251-295 (394)
195 PRK11462 putative transporter; 96.0 0.015 3.2E-07 39.8 4.6 93 7-100 51-149 (460)
196 KOG0253|consensus 95.9 0.01 2.2E-07 40.4 3.2 84 6-97 118-201 (528)
197 PF01306 LacY_symp: LacY proto 95.9 0.044 9.6E-07 37.4 6.1 86 6-98 264-349 (412)
198 COG0738 FucP Fucose permease [ 95.9 0.05 1.1E-06 37.0 6.3 82 6-92 53-135 (422)
199 PRK15462 dipeptide/tripeptide 95.8 0.054 1.2E-06 37.8 6.4 97 4-100 311-416 (493)
200 PRK11195 lysophospholipid tran 95.8 0.054 1.2E-06 36.3 6.3 33 6-38 246-278 (393)
201 PF13347 MFS_2: MFS/sugar tran 95.7 0.002 4.3E-08 43.4 -0.7 91 8-99 44-142 (428)
202 KOG2533|consensus 95.6 0.11 2.4E-06 36.3 7.5 90 4-100 84-173 (495)
203 COG0477 ProP Permeases of the 95.6 0.041 8.8E-07 34.0 5.0 86 7-97 45-131 (338)
204 KOG1330|consensus 95.6 0.034 7.3E-07 38.5 4.7 92 8-100 290-388 (493)
205 PRK11128 putative 3-phenylprop 95.5 0.14 3.1E-06 33.9 7.5 25 7-31 45-69 (382)
206 KOG3762|consensus 95.5 0.017 3.6E-07 40.8 3.0 83 11-100 416-498 (618)
207 TIGR00924 yjdL_sub1_fam amino 95.4 0.065 1.4E-06 36.9 5.8 94 6-100 317-420 (475)
208 KOG2816|consensus 95.4 0.03 6.4E-07 38.7 4.0 81 10-100 71-151 (463)
209 PF05631 DUF791: Protein of un 95.4 0.3 6.5E-06 32.8 8.5 36 11-46 79-114 (354)
210 TIGR00902 2A0127 phenyl propri 95.0 0.28 6E-06 32.6 7.6 26 8-33 46-71 (382)
211 PRK11652 emrD multidrug resist 94.9 0.22 4.8E-06 33.0 7.0 18 80-98 318-335 (394)
212 PRK09848 glucuronide transport 94.9 0.058 1.3E-06 36.6 4.3 42 6-47 49-95 (448)
213 TIGR00894 2A0114euk Na(+)-depe 94.7 0.22 4.8E-06 33.9 6.7 26 6-31 302-327 (465)
214 PF06779 DUF1228: Protein of u 94.3 0.38 8.3E-06 25.6 5.8 48 4-51 30-77 (85)
215 PRK10213 nepI ribonucleoside t 94.0 0.6 1.3E-05 31.3 7.6 25 8-32 259-283 (394)
216 COG2211 MelB Na+/melibiose sym 93.8 0.14 3.1E-06 35.6 4.3 89 9-98 56-150 (467)
217 COG2270 Permeases of the major 93.6 0.97 2.1E-05 31.3 7.8 85 6-94 63-148 (438)
218 TIGR00788 fbt folate/biopterin 93.5 0.086 1.9E-06 36.3 2.9 94 6-100 293-390 (468)
219 PF03825 Nuc_H_symport: Nucleo 93.3 0.86 1.9E-05 31.0 7.4 41 7-47 43-84 (400)
220 TIGR00926 2A1704 Peptide:H+ sy 92.4 1.8 3.9E-05 31.5 8.3 81 13-93 35-117 (654)
221 TIGR02718 sider_RhtX_FptX side 92.2 0.45 9.8E-06 31.6 4.9 27 12-38 49-76 (390)
222 TIGR00788 fbt folate/biopterin 91.5 1.7 3.8E-05 30.0 7.2 24 18-41 77-105 (468)
223 PF06963 FPN1: Ferroportin1 (F 91.4 2.3 4.9E-05 29.5 7.6 90 9-100 301-395 (432)
224 TIGR00769 AAA ADP/ATP carrier 90.4 2.1 4.7E-05 30.0 6.8 35 17-51 60-94 (472)
225 KOG3762|consensus 89.2 0.82 1.8E-05 32.7 4.1 45 5-49 50-95 (618)
226 PF03209 PUCC: PUCC protein; 87.8 1.3 2.8E-05 30.4 4.3 83 18-100 31-128 (403)
227 KOG2325|consensus 87.5 1 2.3E-05 31.6 3.7 93 4-99 74-167 (488)
228 KOG3098|consensus 87.4 4.7 0.0001 28.3 6.8 84 6-97 55-138 (461)
229 KOG2504|consensus 86.5 1.9 4.2E-05 30.4 4.7 41 5-45 337-379 (509)
230 PF01306 LacY_symp: LacY proto 84.6 1.9 4.1E-05 29.7 3.8 28 9-36 51-78 (412)
231 KOG2533|consensus 83.4 4.3 9.4E-05 28.7 5.2 36 4-39 312-351 (495)
232 KOG2563|consensus 82.8 13 0.00028 26.3 7.1 29 4-32 304-332 (480)
233 COG5336 Uncharacterized protei 82.4 6.7 0.00015 22.0 5.3 36 14-49 55-91 (116)
234 PF06609 TRI12: Fungal trichot 81.0 14 0.0003 27.0 7.0 45 5-49 353-398 (599)
235 TIGR02230 ATPase_gene1 F0F1-AT 73.5 13 0.00028 20.5 5.7 34 12-45 54-87 (100)
236 PF09605 Trep_Strep: Hypotheti 72.7 19 0.00041 22.0 5.5 39 11-49 38-76 (186)
237 PF11947 DUF3464: Protein of u 69.8 14 0.00031 22.0 4.1 25 24-48 57-82 (153)
238 KOG2532|consensus 68.9 26 0.00056 24.7 5.8 27 4-30 297-323 (466)
239 TIGR00880 2_A_01_02 Multidrug 59.8 26 0.00056 18.8 5.1 8 22-29 74-81 (141)
240 PF10518 TAT_signal: TAT (twin 56.9 14 0.00031 14.9 2.2 17 27-43 1-17 (26)
241 TIGR02185 Trep_Strep conserved 56.6 39 0.00085 20.7 4.5 34 11-44 40-73 (189)
242 PF06963 FPN1: Ferroportin1 (F 56.5 61 0.0013 22.7 5.8 39 8-46 45-83 (432)
243 COG3104 PTR2 Dipeptide/tripept 55.3 76 0.0017 22.8 6.4 95 4-98 327-431 (498)
244 COG1268 BioY Uncharacterized c 51.1 57 0.0012 20.1 5.3 22 9-30 90-111 (184)
245 COG2807 CynX Cyanate permease 50.7 49 0.0011 23.0 4.5 46 4-49 336-381 (395)
246 TIGR00805 oat sodium-independe 48.8 34 0.00073 25.0 3.8 34 13-46 379-414 (633)
247 COG4708 Predicted membrane pro 46.7 28 0.0006 20.7 2.5 23 10-32 143-165 (169)
248 PF03092 BT1: BT1 family; Int 46.4 64 0.0014 22.3 4.7 36 16-51 39-79 (433)
249 KOG3764|consensus 43.7 41 0.0009 23.7 3.4 38 11-48 316-355 (464)
250 KOG3098|consensus 41.8 1.1E+02 0.0023 21.8 5.2 87 7-94 285-386 (461)
251 PF03219 TLC: TLC ATP/ADP tran 40.8 1.3E+02 0.0029 21.5 6.5 37 15-51 73-109 (491)
252 COG3817 Predicted membrane pro 39.1 1.1E+02 0.0025 20.1 5.7 90 8-98 102-206 (313)
253 PF14068 YuiB: Putative membra 38.5 49 0.0011 18.3 2.6 21 10-30 76-96 (102)
254 KOG2816|consensus 37.8 1.5E+02 0.0032 21.1 7.1 84 9-100 285-369 (463)
255 PF03817 MadL: Malonate transp 37.6 81 0.0017 18.1 3.4 27 6-32 93-119 (125)
256 PF09527 ATPase_gene1: Putativ 37.6 50 0.0011 15.6 6.0 30 15-44 15-44 (55)
257 TIGR02876 spore_yqfD sporulati 37.1 45 0.00098 22.9 2.8 30 22-51 75-104 (382)
258 PF06898 YqfD: Putative stage 37.1 44 0.00096 22.9 2.8 30 22-51 78-107 (385)
259 COG2119 Predicted membrane pro 36.6 1.1E+02 0.0023 19.1 5.9 37 8-44 141-177 (190)
260 PF03209 PUCC: PUCC protein; 35.5 1.6E+02 0.0034 20.7 7.6 45 7-51 250-295 (403)
261 PF05546 She9_MDM33: She9 / Md 35.3 46 0.00099 20.9 2.4 29 5-33 153-181 (207)
262 PTZ00207 hypothetical protein; 32.7 2E+02 0.0044 21.2 6.4 18 73-91 465-482 (591)
263 TIGR00807 malonate_madL malona 31.7 1.1E+02 0.0023 17.6 3.6 26 6-31 93-118 (125)
264 TIGR00806 rfc RFC reduced fola 31.5 2.1E+02 0.0045 20.9 6.8 62 10-77 307-370 (511)
265 COG2807 CynX Cyanate permease 31.2 1.9E+02 0.0041 20.3 6.7 45 4-48 246-291 (395)
266 PF09335 SNARE_assoc: SNARE as 30.7 96 0.0021 16.8 3.1 21 10-30 23-43 (123)
267 KOG2615|consensus 30.3 1.9E+02 0.0042 20.5 4.9 33 67-100 359-391 (451)
268 PF02632 BioY: BioY family; I 29.8 1.2E+02 0.0027 17.8 5.4 21 11-31 63-83 (148)
269 PF07672 MFS_Mycoplasma: Mycop 29.3 1.7E+02 0.0037 19.3 4.8 8 28-35 169-176 (267)
270 PF08551 DUF1751: Eukaryotic i 28.9 1.1E+02 0.0023 16.7 6.2 39 9-47 22-61 (99)
271 COG0738 FucP Fucose permease [ 27.8 2.2E+02 0.0049 20.1 8.5 74 10-91 281-354 (422)
272 TIGR00939 2a57 Equilibrative N 27.1 2.3E+02 0.0049 19.9 6.7 24 9-32 53-76 (437)
273 PF01925 TauE: Sulfite exporte 26.9 1.6E+02 0.0035 18.2 5.5 17 14-30 206-222 (240)
274 COG4769 Predicted membrane pro 26.6 1.4E+02 0.0031 18.2 3.4 33 6-38 78-110 (181)
275 KOG3500|consensus 24.6 1.2E+02 0.0027 16.1 4.1 45 8-52 8-52 (84)
276 PF01788 PsbJ: PsbJ; InterPro 24.4 86 0.0019 14.2 3.3 17 25-41 2-18 (40)
277 PF03092 BT1: BT1 family; Int 23.8 1.3E+02 0.0028 20.9 3.3 36 8-43 131-166 (433)
278 PF13000 Acatn: Acetyl-coenzym 23.1 1.3E+02 0.0028 22.0 3.1 32 20-51 59-91 (544)
279 COG0586 DedA Uncharacterized m 22.4 1.7E+02 0.0036 18.2 3.3 30 8-37 61-90 (208)
280 COG3105 Uncharacterized protei 22.3 1.8E+02 0.0039 17.0 3.4 23 9-31 9-31 (138)
281 COG3238 Uncharacterized protei 22.2 1.9E+02 0.0041 17.3 3.3 13 16-28 104-116 (150)
282 PRK11677 hypothetical protein; 21.9 1.8E+02 0.0038 17.0 3.1 17 13-29 8-24 (134)
283 PF08144 CPL: CPL (NUC119) dom 21.9 16 0.00036 21.5 -1.1 7 26-32 3-9 (148)
284 KOG4332|consensus 21.4 2.8E+02 0.0061 19.0 7.8 89 11-100 292-383 (454)
285 PF01770 Folate_carrier: Reduc 21.3 3E+02 0.0066 19.4 7.1 61 10-76 294-356 (412)
286 PF13940 Ldr_toxin: Toxin Ldr, 21.1 96 0.0021 13.5 2.3 13 14-26 21-33 (35)
287 TIGR02979 phageshock_pspD phag 20.9 61 0.0013 16.0 0.9 17 18-34 21-37 (59)
288 PRK10847 hypothetical protein; 20.4 1.9E+02 0.004 18.1 3.3 24 9-32 77-100 (219)
No 1
>KOG0569|consensus
Probab=99.57 E-value=5.6e-15 Score=99.67 Aligned_cols=97 Identities=25% Similarity=0.395 Sum_probs=84.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-CC-CCccHHHHHHHHHHHHHHhhcccc
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-GT-VGSQILPFIMLLLLAFFTSIGIAA 80 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~l~~~~~~~~~~~ 80 (101)
.+.+...+.++++.++++.+++||.|||++++.+..++.++...+..... . .. .+..+..++..++|..+++.|.+|
T Consensus 308 ~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gp 387 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGP 387 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCc
Confidence 46788889999999999999999999999999999999888888776543 2 22 455677889999999999999999
Q ss_pred chhhhecccCCccccccccc
Q psy7008 81 IPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 81 ~~~~~~~El~p~~~R~~~~~ 100 (101)
++|.+.+|++|++.|+.+++
T Consensus 388 i~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 388 IPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred hhHHHHHHhCCccchHHHHH
Confidence 99999999999999998764
No 2
>KOG0254|consensus
Probab=99.36 E-value=4.4e-12 Score=86.55 Aligned_cols=96 Identities=26% Similarity=0.547 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-C----CCCccHHHHHHHHHHHHHHhhcc
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-G----TVGSQILPFIMLLLLAFFTSIGI 78 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~~~~~~l~~~~~~~~~ 78 (101)
..+.+.++++.+++.++.+++||+|||++++.+...+.++...++.... + . .....+..++...++...++.++
T Consensus 333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~ 412 (513)
T KOG0254|consen 333 LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW 412 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 4567888999999999999999999999999999999999998887654 2 1 22356788888889999999999
Q ss_pred ccchhhhecccCCccccccccc
Q psy7008 79 AAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 79 ~~~~~~~~~El~p~~~R~~~~~ 100 (101)
++++|.+.+|++|.+.|+++.+
T Consensus 413 g~v~w~~~sEifp~~~r~~~~s 434 (513)
T KOG0254|consen 413 GPVPWVIVSEIFPLRLRSKGAS 434 (513)
T ss_pred ccchhhhhhccCcHhHHhhhHH
Confidence 9999999999999999998764
No 3
>KOG0253|consensus
Probab=99.23 E-value=3.9e-11 Score=79.11 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+..++|.++.++++||+|||+.+....+..+++.++...+- .......+.+....+.+.++ .+.|.|.
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~------~rn~~tvllf~arafisg~f-qvaYvYt 459 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK------TRNAYTVLLFTARAFISGAF-QVAYVYT 459 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHhchh-eEEEEec
Confidence 4566788999999999999999999999999999999988876543 11222233333444444444 4578899
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|++|++.|++|.|
T Consensus 460 PEVyPTavRatgvG 473 (528)
T KOG0253|consen 460 PEVYPTAVRATGVG 473 (528)
T ss_pred Ccccchhhhhcchh
Confidence 99999999999986
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.16 E-value=2.1e-10 Score=78.06 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
.+..+++.++.+++.||+|||+.+..+.....++..++..... .............+...+..+.++..+.+.+|++
T Consensus 345 ~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN---HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3456678888999999999999988888777776665554321 1011112222223333345566778888899999
Q ss_pred Cccccccccc
Q psy7008 91 PLRSVFRYHD 100 (101)
Q Consensus 91 p~~~R~~~~~ 100 (101)
|++.|+++.+
T Consensus 422 p~~~R~~~~g 431 (502)
T TIGR00887 422 PTRYRSTAHG 431 (502)
T ss_pred chhHHHHHHH
Confidence 9999999876
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.13 E-value=1.1e-10 Score=82.81 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
+.+..+..+++.++++++.||+|||+++..+.++.+++.+++.... .....++..+++.+... +..+..+.+.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------s~~~ll~~~~l~g~~~~-~~~~~~~a~~ 673 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------SESAMIALLCLFGGLSI-AAWNALDVLT 673 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5566788899999999999999999999999888888877665432 12223333333333333 2335677789
Q ss_pred cccCCcccccccccC
Q psy7008 87 SEVFPLRSVFRYHDY 101 (101)
Q Consensus 87 ~El~p~~~R~~~~~~ 101 (101)
+|++|++.|++++|+
T Consensus 674 aEl~Pt~~Rgta~Gi 688 (742)
T TIGR01299 674 VELYPSDKRATAFGF 688 (742)
T ss_pred HHHcCHHHHHHHHHH
Confidence 999999999998763
No 6
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.03 E-value=1.9e-09 Score=72.55 Aligned_cols=91 Identities=22% Similarity=0.418 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+..+++.++++++.||+|||+.+..+.....++...+..... ..............+...+..++++..+.+.+
T Consensus 313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 3456777889999999999999999999998888887776654321 11122233334445555555556677888999
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|++|++.|+++.+
T Consensus 391 e~~p~~~r~~~~g 403 (479)
T PRK10077 391 EIFPNAIRGKALA 403 (479)
T ss_pred hhCChhHHHHHHH
Confidence 9999999998875
No 7
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.00 E-value=3.5e-12 Score=85.22 Aligned_cols=96 Identities=25% Similarity=0.493 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c-CCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K-GTVGSQILPFIMLLLLAFFTSIGIAAIP 82 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (101)
.+.+..+..+++.+++.++.||+|||+.++.+.....++...+..... . .+...+...++...++...++.++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~ 370 (451)
T PF00083_consen 291 ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLP 370 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence 445566777888888889999999999999998888887777651111 1 1112344555556666677788889999
Q ss_pred hhhecccCCcccccccccC
Q psy7008 83 WMLLSEVFPLRSVFRYHDY 101 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~~~~ 101 (101)
+.+.+|+||++.|+++.++
T Consensus 371 ~~~~~ElfPt~~R~~~~~~ 389 (451)
T PF00083_consen 371 WIYTAELFPTKVRSTGIGL 389 (451)
T ss_pred ccccccccccccccccccc
Confidence 9999999999999998764
No 8
>KOG0252|consensus
Probab=98.90 E-value=7.6e-11 Score=79.16 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+.....++|.++...++|++|||+.++.+++++++..+.++..+.+ .......+++..+..++.+.|.+.....+++
T Consensus 355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpa 432 (538)
T KOG0252|consen 355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--LENTIGFVVLYSLTFFFGNFGPNATTFIVPA 432 (538)
T ss_pred HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--ccccCceeehHHHHHHHHhcCCCceeEEeeh
Confidence 44445556677778888999999999999999999888877654321 1133455666777777888899999999999
Q ss_pred ccCCcccccccccC
Q psy7008 88 EVFPLRSVFRYHDY 101 (101)
Q Consensus 88 El~p~~~R~~~~~~ 101 (101)
|.||+|.|++.+|+
T Consensus 433 E~FParvR~t~hGI 446 (538)
T KOG0252|consen 433 EIFPARVRSTCHGI 446 (538)
T ss_pred hhchHHHhhhhhhH
Confidence 99999999998873
No 9
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.89 E-value=6.4e-09 Score=70.88 Aligned_cols=94 Identities=9% Similarity=0.009 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGS-QILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+.+....+...++.++.+++.||+|||+.+..+..+..++..+...... ..... .+...+...+.....+ +..+...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g-~~~~~~~ 137 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-SSPKSVMATLCFWRFWLGVGIG-GDYPLSA 137 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-cccchHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence 3456667888899999999999999999998888887777766554210 00000 1223333333333322 2335667
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+.+|.+|++.|+++.+
T Consensus 138 ~~~~e~~p~~~Rg~~~~ 154 (502)
T TIGR00887 138 IITSEFATKKWRGAMMA 154 (502)
T ss_pred HHHHHhcChhhHHHHHH
Confidence 78999999999998765
No 10
>TIGR00898 2A0119 cation transport protein.
Probab=98.84 E-value=1.7e-08 Score=68.54 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+.++..+++.++.+++.||+|||+.+..+....+++.+.+.... ....+.......+....... ..+..+.+.
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 435 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----VDLYFLRTALAVLGKFGITS-AFQMVYLYT 435 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3455677788999999999999999999888888777766554432 11122332322222222222 235567788
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|++|++.|+++.|
T Consensus 436 ~e~~p~~~r~~~~g 449 (505)
T TIGR00898 436 AELYPTVVRNLGVG 449 (505)
T ss_pred cccccHHHHhhhHh
Confidence 99999999999876
No 11
>KOG0255|consensus
Probab=98.80 E-value=1.7e-08 Score=69.05 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+.+.+..++..+|+++.+.+.||+|||+.++.+..+..++....+.. .++......-...+.+..+.....+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhccchhHHhHh
Confidence 45677788899999999999999999999999999998888665542 33343343444444555555677788
Q ss_pred hecccCCcccccccc
Q psy7008 85 LLSEVFPLRSVFRYH 99 (101)
Q Consensus 85 ~~~El~p~~~R~~~~ 99 (101)
+.+|+++++.|+.+.
T Consensus 195 ~~~E~~~~~~R~~~~ 209 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLAL 209 (521)
T ss_pred hheeecCcchhhHHH
Confidence 899999999998764
No 12
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.80 E-value=2.2e-08 Score=67.51 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c---CCCCccHHH-HHHHHHHHHHHhhcc
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K---GTVGSQILP-FIMLLLLAFFTSIGI 78 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~-~~~~~l~~~~~~~~~ 78 (101)
+......+...+++++.+++.||+|||+.++.+.....++......... . ......... ++...+.... ..+.
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~-~g~~ 137 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG-VGLA 137 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh-HhHH
Confidence 4556667888999999999999999999999988887776665443210 0 001111122 2222222222 2223
Q ss_pred ccchhhhecccCCccccccccc
Q psy7008 79 AAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 79 ~~~~~~~~~El~p~~~R~~~~~ 100 (101)
.+....+.+|.+|++.|++..+
T Consensus 138 ~~~~~~~i~e~~~~~~rg~~~~ 159 (479)
T PRK10077 138 SMLSPMYIAEIAPAHIRGKLVS 159 (479)
T ss_pred hhHHHHHHHhhCChhhhhHHHH
Confidence 3556667899999999998764
No 13
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.76 E-value=2e-08 Score=67.29 Aligned_cols=87 Identities=20% Similarity=0.073 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCcc-HHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
+...+++++.|++.||+|||+.+..+.....++....+.... +...... ....+...+.... ..+..+....+.+|.
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS-VGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhh-hhhhHhhHHHHHHHh
Confidence 444589999999999999999999999888888877654320 0000001 1122222222222 222335566788999
Q ss_pred CCcccccccc
Q psy7008 90 FPLRSVFRYH 99 (101)
Q Consensus 90 ~p~~~R~~~~ 99 (101)
+|++.|++..
T Consensus 153 ~p~~~rg~~~ 162 (432)
T PRK10406 153 AVEGRKGFYA 162 (432)
T ss_pred CCCCcccHHH
Confidence 9999998754
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.76 E-value=4.1e-08 Score=66.81 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc---H---HHHHHHHHHHHHHhhccccchhh
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ---I---LPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
.+...++.++.|++.||+|||+.+..+..+.+++..+.+.... ... + ..++...+.... ..+..+....
T Consensus 67 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~----~~~~g~~a~~~l~~~R~l~G~g-~g~~~~~~~~ 141 (490)
T PRK10642 67 FLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPS----YATIGIWAPILLLLCKMAQGFS-VGGEYTGASI 141 (490)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHhH-hHhhHHHHHH
Confidence 3556789999999999999999999999999888887765321 000 0 122222222222 2233345566
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 142 ~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 142 FVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHhCCCCCCcHHHH
Confidence 7899999999987643
No 15
>TIGR00898 2A0119 cation transport protein.
Probab=98.76 E-value=3.2e-08 Score=67.26 Aligned_cols=89 Identities=20% Similarity=0.142 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+...+..+...++.++.+++.||+|||+.+..+.....++.+..... ...+...+...+. .....+..+....
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~r~l~-G~~~~~~~~~~~~ 203 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------PNYTVFLVFRLLV-GMGIGGIWVQAVV 203 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHH-HhhccchHHHHHH
Confidence 44566778889999999999999999999999888887777665432 1222233333322 2222233466777
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 204 ~~~e~~~~~~r~~~~~ 219 (505)
T TIGR00898 204 LNTEFLPKKQRAIVGT 219 (505)
T ss_pred HhheecChhhhHHHHH
Confidence 8999999999987643
No 16
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.75 E-value=2.5e-08 Score=56.20 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
...+...++.++.+++.||+|||+.+..+.....++....... ...+.......+.....+. ..+..+.+..|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------SNITVLIIARFLQGFGAAF-ALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH-HHHhHHHHHHH
Confidence 4456778899999999999999999888877777666655432 1222333333333333222 23556667899
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
.+|++.|++..+
T Consensus 79 ~~~~~~~~~~~~ 90 (141)
T TIGR00880 79 IYPPEERGVALG 90 (141)
T ss_pred HCChhhhhHHHH
Confidence 999999988754
No 17
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.75 E-value=8.4e-08 Score=63.84 Aligned_cols=95 Identities=31% Similarity=0.533 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCC---CccHHHHHHHHHHHHHHhhccccc
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTV---GSQILPFIMLLLLAFFTSIGIAAI 81 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 81 (101)
......+...++.++.+++.||++||+.+..+.....++...+..... .... ...........++...++.+..+.
T Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence 344556778899999999999999999988887777766665553221 0111 113444444555556666667777
Q ss_pred hhhhecccCCccccccccc
Q psy7008 82 PWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 82 ~~~~~~El~p~~~R~~~~~ 100 (101)
.+.+.+|.+|++.|+++.+
T Consensus 404 ~~~~~~~~~p~~~~~~~~~ 422 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGIS 422 (481)
T ss_pred ehhhhhccCChHHHHHHHH
Confidence 7888899999999998765
No 18
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.75 E-value=2.3e-08 Score=71.30 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+...+..+..+++.++.+++.||+|||+.++.+.++..++.++..... ..+...+...+...+.+ +..+....
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~------s~~~llv~R~l~G~g~g-~~~p~~~~ 278 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ------GYGFFLFCRLLSGFGIG-GAIPIVFS 278 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345566788899999999999999999999998877777766654321 22233333333333332 23466778
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 279 ~isE~~p~~~Rg~~~g 294 (742)
T TIGR01299 279 YFAEFLAQEKRGEHLS 294 (742)
T ss_pred HHHHHCCHHHHHHHHH
Confidence 8999999999987643
No 19
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.74 E-value=7e-08 Score=64.66 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
......++..+.+++.||++||+.+........+...+...... .............+.....+. ..+..+.+.+|+
T Consensus 288 ~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~ 364 (432)
T PRK10406 288 ALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ--NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEM 364 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455677778899999999998776665544333322221111 011112222212111111111 123455678999
Q ss_pred CCcccccccccC
Q psy7008 90 FPLRSVFRYHDY 101 (101)
Q Consensus 90 ~p~~~R~~~~~~ 101 (101)
+|++.|+++.|+
T Consensus 365 fp~~~r~t~~g~ 376 (432)
T PRK10406 365 FPAQVRALGVGL 376 (432)
T ss_pred CCCCccchhhhH
Confidence 999999998863
No 20
>PRK09952 shikimate transporter; Provisional
Probab=98.74 E-value=6.8e-08 Score=64.94 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
.+....++.++.+++.||+|||+.+..+.....++......... .....+.......+.....+.. .+..+.+.+|.
T Consensus 295 ~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~ 371 (438)
T PRK09952 295 VGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--AQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEM 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34556777788999999999999888776655444333322111 0111122222222222222222 24456778999
Q ss_pred CCccccccccc
Q psy7008 90 FPLRSVFRYHD 100 (101)
Q Consensus 90 ~p~~~R~~~~~ 100 (101)
+|++.|+++.+
T Consensus 372 ~p~~~r~tg~g 382 (438)
T PRK09952 372 FGASYRYSGAG 382 (438)
T ss_pred CCcchhHHHHh
Confidence 99999987765
No 21
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.74 E-value=4.5e-08 Score=65.10 Aligned_cols=92 Identities=22% Similarity=0.201 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++......... ....+..++...+...+.+. ..+....
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~-~~~~~~~ 150 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF---ALSVEMLIVGRVLLGIGVGI-ASALVPM 150 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhH-HHhHHHH
Confidence 3455667888899999999999999999999888887777766543221 11112333333333333222 2345566
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|+++.+
T Consensus 151 ~i~~~~~~~~r~~~~~ 166 (481)
T TIGR00879 151 YLSEIAPKALRGALTS 166 (481)
T ss_pred HHHccCChhhhhhhhh
Confidence 7899999999998765
No 22
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.73 E-value=3.7e-08 Score=63.85 Aligned_cols=88 Identities=14% Similarity=-0.076 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+..+..++........ ..+...+...+..... ....+....+
T Consensus 35 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~ 107 (379)
T TIGR00881 35 LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------SLWVMAALWALNGIFQ-GMGWPPCGRT 107 (379)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHhhc-cccCCchHHH
Confidence 44566677889999999999999999999999888887777665421 2223333333332222 2234556667
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 108 ~~~~~~~~~r~~~~~ 122 (379)
T TIGR00881 108 VTKWFSRSERGTWVS 122 (379)
T ss_pred HHHhcCHhhheeeEe
Confidence 899999999988765
No 23
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.70 E-value=3.7e-08 Score=63.92 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....+........ ...+...+...+.....+. ..+....
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~-~~~~~~~ 105 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA------GAYVSLYILRVLLGAAEAP-FFPGIIL 105 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence 44556678888999999999999999999988888777776665542 1223333333343333332 3355566
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 106 ~~~~~~~~~~r~~~~~ 121 (399)
T TIGR00893 106 IVASWFPASERATAVS 121 (399)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 7899999999988764
No 24
>KOG0569|consensus
Probab=98.69 E-value=1e-07 Score=65.06 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+....+..+++++|++..++++||+|||..++...+....+...+..... .+.....+....+.....+... ....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~---~~~~e~li~GR~i~Gl~~gl~~-~~~p 138 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS---APSFEMLILGRLIVGLACGLST-GLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhHHHH-HHHH
Confidence 44566778899999999999999999999998888888777777665432 1222233333333333333333 3344
Q ss_pred hhecccCCcccccccc
Q psy7008 84 MLLSEVFPLRSVFRYH 99 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~ 99 (101)
.|..|..|++.||...
T Consensus 139 myl~E~sP~~~RG~~g 154 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALG 154 (485)
T ss_pred HHHhhcChhhhccHHH
Confidence 5789999999999753
No 25
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.69 E-value=8.6e-08 Score=63.31 Aligned_cols=94 Identities=12% Similarity=-0.000 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCC-ccH-HHHHHHHHHHHHHhhccccchh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVG-SQI-LPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
......+...+..++.|++.||+|||+.+..+.....++..........++.. ... ..++...+.....+. ..+...
T Consensus 56 ~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~ 134 (399)
T PRK05122 56 VISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL-AGTGSI 134 (399)
T ss_pred HHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh-hcchHH
Confidence 44556677788999999999999999999998877766655443322100000 111 222222233322222 234445
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+..|..|.+.|+++.+
T Consensus 135 ~~~~~~~~~~~r~~~~~ 151 (399)
T PRK05122 135 LWGIGRVGALHTGRVIS 151 (399)
T ss_pred HHHHhhcChhhhccchh
Confidence 56689999999998865
No 26
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.68 E-value=1e-07 Score=64.87 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+..+++.++.+++.||+|||+.+..+.....+.......... ............+.....+.+.+. ...+.+
T Consensus 293 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~g~-~~~~~~ 368 (490)
T PRK10642 293 IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN---SNVIGLIFAGLLMLAVILNCFTGV-MASTLP 368 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445666788888999999999999887776544333322211111 111112222222222222222322 344578
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|++|++.|+++.+
T Consensus 369 ~~~p~~~Rg~~~g 381 (490)
T PRK10642 369 AMFPTHIRYSALA 381 (490)
T ss_pred HHCCCccchHHHH
Confidence 9999999998765
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.68 E-value=8.6e-08 Score=62.86 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+....++........ ...+.......+.....+. ..+....+
T Consensus 52 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~~ 124 (405)
T TIGR00891 52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA------PGYITMFIARLVIGIGMGG-EYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhhh-hhHHHHHH
Confidence 4455677888999999999999999999998888777776665432 1222222333333333222 23445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|++.|++..+
T Consensus 125 i~~~~~~~~~~~~~~ 139 (405)
T TIGR00891 125 VIESWPKHLRNKASG 139 (405)
T ss_pred HHHhCChhhhhHHHH
Confidence 889999999988765
No 28
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.68 E-value=5.6e-08 Score=64.88 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.++..+........ ...+...+...+.....+ +..+....+
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~-~~~~~~~~~ 120 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA------TGPESLYLLRILVGIAEA-GFLPGILLY 120 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4455567778889999999999999999988888888777766542 122223333333333322 233555567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 121 ~~~~~~~~~rg~~~~ 135 (412)
T TIGR02332 121 LTFWFPAYFRARANA 135 (412)
T ss_pred HHHHcCHHHHHHHHH
Confidence 899999999988754
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.68 E-value=1.5e-07 Score=63.72 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
..........++.++.|++.||+|||+++..+.+..++..+..+..... .....+...+...+.....+.+ .+....+
T Consensus 69 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~ 146 (467)
T PRK09556 69 IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS-GSVSLGLMIALWALSGFFQSTG-GPCSYST 146 (467)
T ss_pred HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhcc-chHHHHH
Confidence 4455667778899999999999999999988887777776665543210 0112222333333333333333 3555567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 147 i~~~~~~~~rg~a~g 161 (467)
T PRK09556 147 ITRWTPRRKRGRFLG 161 (467)
T ss_pred HHHHcCccceeeeEE
Confidence 899999999999876
No 30
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.67 E-value=9e-08 Score=61.84 Aligned_cols=93 Identities=9% Similarity=0.024 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.................. ....+...+...+.....+. ..+....+
T Consensus 39 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~-~~~~~~~~ 116 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-GLNIWQVYVLAGILAIAQAF-FTPAYQAM 116 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44556677788999999999999999999888877666665554432100 01222233333333333222 33555667
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 117 ~~~~~~~~~~~~~~~ 131 (365)
T TIGR00900 117 LPDLVPEEQLTQANS 131 (365)
T ss_pred HHhcCCHHHHHHHHh
Confidence 899999999988764
No 31
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.67 E-value=6.7e-08 Score=65.11 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=61.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
.+......+...++.++.+++.||+|||+.+..+.....++....... ...+...+...+. ........+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-G~~~~~~~~~~~ 112 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA------PNLELMIIFRVIQ-GFGGGPLIPLSF 112 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc------CCHHHHHHHHHHH-HhhhhhHHHHHH
Confidence 345566778889999999999999999999999888887777665431 1222222222222 222223345566
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+..|.+|++.|+++.+
T Consensus 113 ~~i~~~~~~~~r~~~~~ 129 (485)
T TIGR00711 113 STLLNIYPPEKRGRAMA 129 (485)
T ss_pred HHHHHHCCHHHHHHHHH
Confidence 77899999999988764
No 32
>PRK09952 shikimate transporter; Provisional
Probab=98.67 E-value=6.3e-08 Score=65.11 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCccH-HHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQI-LPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
+...+++++.+++.||+|||+.+..+....+++..+.+.... +....... .......+.....+ +..+....+.+|.
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g-~~~~~~~~~~~e~ 153 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVG-GEWGGAALLAVES 153 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhc-ccHHHHHHHHHHh
Confidence 445688888999999999999999998888888777665321 00000000 12222222222222 2224445678999
Q ss_pred CCcccccccc
Q psy7008 90 FPLRSVFRYH 99 (101)
Q Consensus 90 ~p~~~R~~~~ 99 (101)
+|++.|++..
T Consensus 154 ~p~~~rg~~~ 163 (438)
T PRK09952 154 APKNKKAFYS 163 (438)
T ss_pred CCCCCCcHHH
Confidence 9999998654
No 33
>KOG0254|consensus
Probab=98.67 E-value=8.8e-08 Score=65.66 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
++.+....+...+++++++++.|++|||+.++.+.+...++..+.... .+.....+...+.....+.. .....
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------~~~~~l~~GR~l~G~g~G~~-~~~~p 164 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------PSWYQLIVGRILTGLGVGGA-SVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhccchhhh-hhcch
Confidence 466778889999999999999999999999999999999988887753 23333334444444333322 24455
Q ss_pred hhecccCCcccccccc
Q psy7008 84 MLLSEVFPLRSVFRYH 99 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~ 99 (101)
.|.+|+.|++.|+.-.
T Consensus 165 iy~sEiap~~~RG~l~ 180 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLV 180 (513)
T ss_pred hhHhhcCChhhhHHHH
Confidence 6899999999998754
No 34
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.66 E-value=8.1e-08 Score=61.55 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++....... ...+.......+.....+ ...+....
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~ 110 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA------SSLWLLLVGRFLLGLGGG-ALYPAAAA 110 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHcccc-cccHhHHH
Confidence 34555667888999999999999999999998888888887766542 122223333333322222 23355566
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 111 ~~~~~~~~~~~~~~~~ 126 (352)
T cd06174 111 LIAEWFPPKERGRALG 126 (352)
T ss_pred HHHHhCCccchhhhhh
Confidence 7899999999998765
No 35
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.64 E-value=1.5e-07 Score=62.64 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....++........ ..+...+...+.....+ ...+....+
T Consensus 58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~g~g-~~~~~~~~~ 130 (426)
T PRK12307 58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS------GVIMLTLSRFIVGMGMA-GEYACASTY 130 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44556678889999999999999999999999988888777655432 22222232222222222 223445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|++.|+++.+
T Consensus 131 ~~~~~~~~~r~~~~~ 145 (426)
T PRK12307 131 AVESWPKHLKSKASA 145 (426)
T ss_pred HHHhCCHhHhhHhhh
Confidence 889999999998765
No 36
>PRK12382 putative transporter; Provisional
Probab=98.64 E-value=1.4e-07 Score=62.19 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCcc-HHHHHHHHHHHHHHhhccccchh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
......+...+.+++.|++.||+|||+.+..+.+...++......... ......+ +...+...+.....+. ..+...
T Consensus 56 ~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~ 134 (392)
T PRK12382 56 AVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQ-LLTGAL 134 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344556777888999999999999999998887766655433222111 0000112 2222222222222222 223334
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+..|.+|++.|+++.+
T Consensus 135 ~~~~~~~~~~~r~~a~~ 151 (392)
T PRK12382 135 TWGLGLVGPKHSGKVMS 151 (392)
T ss_pred HHHHhhCCccccchhhh
Confidence 45689999999998765
No 37
>PRK15075 citrate-proton symporter; Provisional
Probab=98.62 E-value=3.5e-07 Score=61.35 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH-HHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC-GILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
..+..+..+++.++.+++.||+|||+.+..+.........+. ..... .................++ ...+..+.+
T Consensus 280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 355 (434)
T PRK15075 280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA---APSFARMLAVELWLSFLYG-SYNGAMVVA 355 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 445567778889999999999999998776554433222111 11111 1111111111111112222 223444567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 356 ~~e~~p~~~rg~~~g 370 (434)
T PRK15075 356 LTEVMPAEVRTAGFS 370 (434)
T ss_pred HHHHCCCCccchhee
Confidence 899999999999875
No 38
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.61 E-value=1.2e-07 Score=62.80 Aligned_cols=88 Identities=14% Similarity=-0.033 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....+........ .+.+...+...+.....+. ..+....+
T Consensus 55 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~-~~~~~~~~ 127 (406)
T PRK11551 55 AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA------WDFPSLLVARLLTGVGLGG-ALPNLIAL 127 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhHHH-HHHHHHHH
Confidence 4455667778899999999999999999998887777666554432 1222333333333333222 22444567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 128 ~~~~~~~~~r~~~~~ 142 (406)
T PRK11551 128 TSEAVGPRLRGTAVS 142 (406)
T ss_pred HHHHcCHHHHHHHHH
Confidence 889999999988754
No 39
>TIGR00895 2A0115 benzoate transport.
Probab=98.59 E-value=1.6e-07 Score=61.35 Aligned_cols=88 Identities=19% Similarity=0.078 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....++....... ...+.......+.....+ ...+....+
T Consensus 57 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 129 (398)
T TIGR00895 57 LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA------TNVTQLLILRFLAGLGLG-GLMPNLNAL 129 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHhcccc-cchhhHHHH
Confidence 3445567778899999999999999999998887777766655432 122222222222222222 223555677
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 130 ~~~~~~~~~r~~~~~ 144 (398)
T TIGR00895 130 VSEYAPKRFRGTAVG 144 (398)
T ss_pred HHHHcCHHhhchhHh
Confidence 899999999998765
No 40
>PRK03699 putative transporter; Provisional
Probab=98.58 E-value=2.8e-07 Score=61.04 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+++.||+|||+.+..+.....++....... ...+...+...+.....+... +....+.
T Consensus 48 ~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i 120 (394)
T PRK03699 48 FTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS------HSLALFSIAMFVLGVVSGITM-SIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------chHHHHHHHHHHHHHhhHhhc-cchhHHh
Confidence 344567778999999999999999999988887777776655432 122233333333333333332 3445567
Q ss_pred cccCCcccccccc
Q psy7008 87 SEVFPLRSVFRYH 99 (101)
Q Consensus 87 ~El~p~~~R~~~~ 99 (101)
+|.+|++.|++..
T Consensus 121 ~~~~~~~~r~~~~ 133 (394)
T PRK03699 121 THVYEGKQRGSRL 133 (394)
T ss_pred hhhcccchHHHHH
Confidence 8999999998764
No 41
>PRK15075 citrate-proton symporter; Provisional
Probab=98.58 E-value=2e-07 Score=62.55 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc------HHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ------ILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
.+++++.+++.||+|||+.+..+.....++........ +... ...++...+.....+.. .+....+.+|
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e 144 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVP----GYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAE 144 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHh
Confidence 46788999999999999999999888888777665421 1010 01122222222222222 2334467899
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
.+|++.|++..+
T Consensus 145 ~~p~~~rg~~~~ 156 (434)
T PRK15075 145 IATPGRKGFYTS 156 (434)
T ss_pred hCCcccchHHHH
Confidence 999999998764
No 42
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.57 E-value=2e-07 Score=62.87 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH-HHHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI-LPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
......+...++.++.+++.||+|||+.+..+..+..+....+..... ...+. .......+.....+... +....
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~gi~~g~~~-~~~~~ 143 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---ATSSIAVMFVLLFLCGWFQGMGW-PPCGR 143 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHHHHHhccc-hHHHH
Confidence 345566777889999999999999999999988888877776654321 11122 22222233333333322 33334
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...|.+|++.|+++.+
T Consensus 144 ~~~~~~~~~~r~~~~~ 159 (452)
T PRK11273 144 TMVHWWSQKERGGIVS 159 (452)
T ss_pred HHHHhCChHHHHHHHH
Confidence 5789999999998765
No 43
>PRK03545 putative arabinose transporter; Provisional
Probab=98.56 E-value=2.6e-07 Score=61.05 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+...++.++.+.+.||+|||+.+..+.....++....... ...+...+...+.... .....+....+.+
T Consensus 51 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~-~~~~~~~~~~~i~ 123 (390)
T PRK03545 51 TIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------WNFTVLLISRIGIAFA-HAIFWSITASLAI 123 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34456667788889999999999999999988877776665442 1222222222222222 2222344456778
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+|++.|+++.+
T Consensus 124 ~~~~~~~r~~~~g 136 (390)
T PRK03545 124 RVAPAGKKAQALS 136 (390)
T ss_pred HhCChhhhhhHHH
Confidence 9999999998765
No 44
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.56 E-value=2.4e-07 Score=68.22 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+...+++++.|++.||+|||++++.+..+..+.......... ....+...+...+.... .....+....+.
T Consensus 53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~-~~~~~~~~~~~i 128 (1146)
T PRK08633 53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY---LGWFWLAFAVTFLLGAQ-SAIYSPAKYGII 128 (1146)
T ss_pred HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHH-HHhhchHHHhhh
Confidence 34455667788899999999999999998887665555444333221 11222333333333322 233445666789
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|.+.|+++.+
T Consensus 129 ~~~~~~~~r~~~~~ 142 (1146)
T PRK08633 129 PELVGKENLSRANG 142 (1146)
T ss_pred HHhcCcccchhhhh
Confidence 99999999998875
No 45
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.56 E-value=2e-07 Score=61.92 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+...++.++.+.+.||+|||+.+..+.....++....... ...+...+...+.....+. ..+....+.+
T Consensus 62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~ 134 (394)
T PRK10213 62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------NSFSLLLIGRACLGLALGG-FWAMSASLTM 134 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------ChHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence 45567778889999999999999999999988888776655432 1223333333333333332 2355566788
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+|++.|+++.+
T Consensus 135 ~~~~~~~~~~a~~ 147 (394)
T PRK10213 135 RLVPPRTVPKALS 147 (394)
T ss_pred HHcCHhHHHHHHH
Confidence 9999999988764
No 46
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.56 E-value=2.6e-07 Score=59.53 Aligned_cols=89 Identities=17% Similarity=0.078 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++....... ...+...+...+.....+ ...+....
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~ 108 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------SNFWLLLIARFLLGIGSG-FFSPASNA 108 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------hhHHHHhhhccccccccc-cccccccc
Confidence 34555667889999999999999999999999988888884444321 122333333333333332 23455667
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 109 ~i~~~~~~~~~~~~~~ 124 (352)
T PF07690_consen 109 LIADWFPPEERGRAFG 124 (352)
T ss_dssp HHHHCCCTCCHHHHHH
T ss_pred cccccchhhhhhhccc
Confidence 7899999999988764
No 47
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.55 E-value=1.1e-07 Score=63.17 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...+..++.|++.||+|||+++..+.....+....+.... . . .....+. ........+....+
T Consensus 43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------~-~--~~~r~l~-G~~~a~~~pa~~a~ 112 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------H-P--LLAYGLV-GIGAAAYSPAKYGI 112 (393)
T ss_pred HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------H-H--HHHHHHH-HHHHHHHHHHHHHH
Confidence 34455677788899999999999999999999888777665543321 1 1 2222222 22333345667778
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|++|++.|+++.+
T Consensus 113 i~~~~~~~~~~~a~~ 127 (393)
T PRK11195 113 LTELLPGEKLVKANG 127 (393)
T ss_pred HHHHcCHHHHHHHHH
Confidence 899999999998765
No 48
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.55 E-value=8e-07 Score=57.91 Aligned_cols=91 Identities=24% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+++.||+|||+.+................... .....+.............+. ..+..+.+.
T Consensus 261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 337 (394)
T TIGR00883 261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL--DSGSFTLFFFLVLGLALIGGM-YTGPMGSFL 337 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHH-HhhhHHHHH
Confidence 34455677888889999999999999776554444333221111110 011222222323333333322 234456778
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|+++.+
T Consensus 338 ~~~~p~~~~~~~~~ 351 (394)
T TIGR00883 338 PELFPTEVRYTGAS 351 (394)
T ss_pred HHhCCccceeeEee
Confidence 99999999998765
No 49
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.55 E-value=1.4e-07 Score=61.61 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....++....... ...+...+...+.....+. ..+....+
T Consensus 45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~-~~~~~~~~ 117 (385)
T TIGR00710 45 TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------NNIETLLVLRFVQAFGASA-GSVISQAL 117 (385)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHcchhH-HHHHHHHH
Confidence 4455667778999999999999999999998887777777665442 1222222322332222222 22445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|++.|++..+
T Consensus 118 ~~~~~~~~~~~~~~~ 132 (385)
T TIGR00710 118 VRDIYPGEELSRIYS 132 (385)
T ss_pred HHHhcCcHHHHHHHH
Confidence 889999999987654
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.54 E-value=2.1e-07 Score=61.44 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+...++.++.+++.||+|||+.+..+.....+........ ...+...+...+.....+ ...+..+.+.
T Consensus 44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~~i 116 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA------ETSSLFLAGRFLQGIGAG-CCYVVAFAIL 116 (392)
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhhh-HHHHHHHHHH
Confidence 344556677888999999999999999998887777776655432 122222222222222222 1234456678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|++..+
T Consensus 117 ~~~~~~~~r~~~~~ 130 (392)
T PRK10473 117 RDTLDDRRRAKVLS 130 (392)
T ss_pred HHHcCHHHHHHHHH
Confidence 89999999988754
No 51
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.52 E-value=2.7e-07 Score=61.97 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....++........ ..+.......+.....+... +....+
T Consensus 63 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~g~~~g~~~-~~~~~~ 135 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS------SLWAFALLWVLNAFFQGWGW-PVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHccc-hHHHHH
Confidence 34456677888999999999999999999998888887777655421 22222222222333333332 445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 136 ~~~~~~~~~rg~~~~ 150 (434)
T PRK11663 136 LTAWYSRTERGGWWA 150 (434)
T ss_pred HHHhCCHHHHHHHHH
Confidence 899999999998764
No 52
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.52 E-value=8e-07 Score=60.99 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
........++.++++++.||+ |||+.+..+.....++...+.... ...........+.....+ ...+....+.
T Consensus 52 ~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-----~~~~~~~l~l~li~iG~G-~~~~~~~alv 125 (493)
T PRK15462 52 SAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-----IHPSFLYLSLAIIVCGYG-LFKSNVSCLL 125 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHhcc-cccccHHHHH
Confidence 344566678899999999999 999999998888877765544211 111111111111112211 1234445678
Q ss_pred cccCCcc--ccccccc
Q psy7008 87 SEVFPLR--SVFRYHD 100 (101)
Q Consensus 87 ~El~p~~--~R~~~~~ 100 (101)
+|++|++ .|.++.+
T Consensus 126 ~elfp~~~~~R~sgf~ 141 (493)
T PRK15462 126 GELYEPTDPRRDGGFS 141 (493)
T ss_pred HHHCCCCCccccceeh
Confidence 9999986 6877654
No 53
>KOG1330|consensus
Probab=98.51 E-value=2.4e-07 Score=62.60 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
.+.+....++..+.+++++++.||++||+++.+|..+..++.+..+... .-|....+..+..++ -....++..
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------~Fwq~~l~R~~vGiG-eAs~~~ia~ 143 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------HFWQVLLCRGFVGIG-EASYSPIAP 143 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccc-hhhhcccch
Confidence 4567788899999999999999999999999999999999888776542 223333333333333 334557777
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+.+++||...|+++.+
T Consensus 144 s~IaD~f~~~~Rs~~~~ 160 (493)
T KOG1330|consen 144 SLIADSFPDDKRSRVLG 160 (493)
T ss_pred hHhhhcCcchhhhHHHH
Confidence 78999999999998765
No 54
>KOG0252|consensus
Probab=98.51 E-value=4e-07 Score=61.72 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhh-ccccch
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSI-GIAAIP 82 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 82 (101)
...+....+..+.|+++.||+.||+|||++.....++..++..+.+.... .+............-+..+.+. +-.|+.
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 35677788999999999999999999999999998888888874433221 1122111111112222222222 235888
Q ss_pred hhhecccCCccccccc
Q psy7008 83 WMLLSEVFPLRSVFRY 98 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~ 98 (101)
.+..+|-...+.|++-
T Consensus 166 AtI~SE~an~~~RGa~ 181 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAF 181 (538)
T ss_pred HHHhhhhhhhccccce
Confidence 8889999999999864
No 55
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.51 E-value=2.7e-07 Score=60.42 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....++...+.... ..+.......+.....+ ...+....+
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~g~~~~-~~~~~~~~~ 103 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ------TIDQLIYMRFLHGLAAA-AASVVINAL 103 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34456677788999999999999999999998888887777665421 22222233333332222 223445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 104 ~~~~~~~~~~~~~~~ 118 (377)
T PRK11102 104 MRDMFPKEEFSRMMS 118 (377)
T ss_pred HHHhcCHHHHHHHHH
Confidence 889999999988754
No 56
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.50 E-value=7.6e-07 Score=59.26 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH-Hhhccccchhhhe
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFF-TSIGIAAIPWMLL 86 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 86 (101)
.+..+..+++.++.+++.||++||+.+..+.....+......... ........ ...+... ...+..+..+.+.
T Consensus 273 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 273 TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-----QDNYLLLG-ACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----cccHHHHH-HHHHHHHHhcccHhHHHHHHH
Confidence 445677888999999999999999988887766655544333221 11222111 1222221 1223334444567
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|.+|++.|+++.|
T Consensus 347 ~~~~p~~~~g~~~g 360 (426)
T PRK12307 347 YDYFPLEVRGLGTG 360 (426)
T ss_pred HHhCcHHHHhhhhh
Confidence 89999999999876
No 57
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.50 E-value=7.3e-07 Score=58.03 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++........ . ..+...+...+.... .... +....
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~-~~~~~~~~~~~~g~~-~~~~-~~~~~ 113 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----Q-SYSVLLLLRLFIGIA-GGSF-ASCMP 113 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHh-chhh-HhHHH
Confidence 455666788899999999999999999999998888888776655421 0 222222222222222 2222 33445
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 114 ~~~~~~~~~~r~~~~~ 129 (366)
T TIGR00886 114 WISFFFPKKIQGTALG 129 (366)
T ss_pred HHHHhcCHhhhhHHHH
Confidence 6889999999988764
No 58
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.48 E-value=4.8e-07 Score=60.53 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...+..+...++.++.+++.||+|||+.+..+.....++....... ...+...+...+.....+ ...+..+.+
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~l~~~r~l~Gi~~~-~~~~~~~~~ 128 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------TSMTQFLIARFIQGTSIC-FIATVGYVT 128 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445567778889999999999999999998888777776655432 122222232232222222 223445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|++.|.+..+
T Consensus 129 ~~~~~~~~~~~~~~~ 143 (413)
T PRK15403 129 VQEAFGQTKGIKLMA 143 (413)
T ss_pred HHHhcCHHHHHHHHH
Confidence 889999988876543
No 59
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.48 E-value=5.3e-07 Score=59.93 Aligned_cols=91 Identities=7% Similarity=-0.076 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
......+...++.++.+++.||+|||+.+..+.....++......... ...++. ......+.....+. ..+....
T Consensus 53 ~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~i~G~g~~~-~~~~~~~ 128 (402)
T TIGR00897 53 AFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL---GHANYPLILLFYGIRGLGYPL-FAYSFLV 128 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHHHHHHHcchHH-HHhHHHH
Confidence 345566778899999999999999999999888887776554322111 111222 22222222222211 1222334
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...|.+|++.|+++.|
T Consensus 129 ~~~~~~~~~~~g~~~g 144 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVG 144 (402)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 5678899999998865
No 60
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.48 E-value=4.5e-07 Score=61.19 Aligned_cols=90 Identities=8% Similarity=-0.112 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.+...+......... ....+...+...+. ........+....+
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~-G~~~~~~~~~~~~~ 155 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQ-GLAQGSVSPATHKI 155 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHH-HHhcccchhhHHHH
Confidence 34555678889999999999999999999888877777665543221 11122222222222 23333334556667
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|++..+
T Consensus 156 ~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 156 IVKWAPPKERSRLLG 170 (465)
T ss_pred HHhcCCHHHHHHHHH
Confidence 899999999998765
No 61
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.47 E-value=6.4e-07 Score=58.04 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+...++.++.+++.||+|||+.+..+.....++...+.... ............+.....+. ..+....+.
T Consensus 246 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~ 320 (377)
T TIGR00890 246 VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP----MLNDVLFLATVALVFFTWGG-TISLFPSLV 320 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc----cchhHHHHHHHHHHHHHhcc-chhccHHHH
Confidence 4455677888999999999999999988887777766665543321 11111221222222222222 223344568
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|++..|
T Consensus 321 ~~~~~~~~~~~~~g 334 (377)
T TIGR00890 321 SDIFGPANSAANYG 334 (377)
T ss_pred HHHhhhhhhhhHhH
Confidence 89999999998765
No 62
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.46 E-value=1.5e-06 Score=57.06 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+..+++.++.+++.||+|||+.+..+.............. ....+.......+.... ..+..+....+.
T Consensus 280 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 353 (405)
T TIGR00891 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----GANVAVLGLGLFFQQML-VQGIWGILPKHL 353 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHH-HccchhhHHHHH
Confidence 345567788999999999999999998877765543332222111 11222222221222222 223334455678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|+++.|
T Consensus 354 ~~~~~~~~~~~~~g 367 (405)
T TIGR00891 354 GEYFPTDQRAAGLG 367 (405)
T ss_pred hhhCCcchhHHHhh
Confidence 99999999998775
No 63
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.46 E-value=5.2e-07 Score=61.17 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....+........ .+.+...+...+.... ..+..+....+
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~-~~~~~~~~~~~ 132 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA------PGYWTLFIARLVIGMG-MAGEYGSSATY 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445567778889999999999999999988887777776665542 1222222222222222 22233445567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|.+.|+++.+
T Consensus 133 ~~~~~~~~~r~~~~~ 147 (496)
T PRK03893 133 VIESWPKHLRNKASG 147 (496)
T ss_pred HHHHcCHHHHHHHHH
Confidence 889999999987654
No 64
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.45 E-value=3.4e-07 Score=61.51 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+......+...++.++.+++.||+|||+.+..+.....++......... ...+.. ......+.....+... +...
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~g~~~-~~~~ 140 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW---ATSSIAIMFVLLFLNGWFQGMGW-PPCG 140 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhhcch-HHHH
Confidence 3445666778899999999999999999888887777777665443210 111222 2222222222222222 3334
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
....|.+|++.|+++++
T Consensus 141 ~~i~~~~~~~~rg~~~~ 157 (438)
T TIGR00712 141 RTMVHWWSQSERGTIVS 157 (438)
T ss_pred HHHHHhcCcccchhHHH
Confidence 45789999999998765
No 65
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.44 E-value=5e-07 Score=58.88 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH---HHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008 15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI---LPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~El~p 91 (101)
.+++++.+++.||+|||+.+..+.....++......... ......+ .......+..... ....+....+.+|.+|
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~-~~~~~~~~~~~~~~~~ 126 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS-YATIGIWAPILLLLARLIQGFSL-GGEWGGAALYLAEYAP 126 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-hhhhHHHHHHHHHHHHHHHHhhc-cccccccHHHhhhcCC
Confidence 467889999999999999999988888877766654221 0000001 1122222222211 1223445567899999
Q ss_pred ccccccccc
Q psy7008 92 LRSVFRYHD 100 (101)
Q Consensus 92 ~~~R~~~~~ 100 (101)
++.|++..+
T Consensus 127 ~~~r~~~~~ 135 (394)
T TIGR00883 127 PGKRGFYGS 135 (394)
T ss_pred cccchHHHH
Confidence 999987543
No 66
>PRK10054 putative transporter; Provisional
Probab=98.44 E-value=5.5e-07 Score=59.89 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...+..++.+++.||+|||+.+..+.....++...+.... ..+.......+.....+ ...+....+.
T Consensus 49 ~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 121 (395)
T PRK10054 49 MTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN------NVTLVVLFFALINCAYS-VFSTVLKAWF 121 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445567788889999999999999998888877766665544321 12222222222222222 2234455667
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|+++.+
T Consensus 122 ~~~~~~~~~~~~~g 135 (395)
T PRK10054 122 ADNLSSTSKTKIFS 135 (395)
T ss_pred HHhcCHhHHHHHHH
Confidence 89999999988754
No 67
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.44 E-value=1e-06 Score=60.02 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+++.||+|||+.+..+.+...+......... ..+...+...+.....+ ...+ ...+.
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~------s~~~l~~~r~l~G~~~~-~~~~-~~~~i 148 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS------SATGFIAVRFFIGFSLA-TFVS-CQYWM 148 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHH-hhHH-HHHHH
Confidence 3445566778899999999999999998888877777665554321 11222222222222222 2222 23357
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|.+|++.|+++.+
T Consensus 149 ~~~~~~~~rg~a~g 162 (476)
T PLN00028 149 STMFNGKIVGTANG 162 (476)
T ss_pred HHhcChhheeHHHH
Confidence 89999999998764
No 68
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.43 E-value=1e-06 Score=58.18 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+....++........ .+.+...+...+.....+. ..+....
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------~~~~~l~~~r~l~G~~~~~-~~~~~~~ 114 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------SSYLMLAIGRLVSGFPHGA-FFGVGAI 114 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhhHH-HHHHHHH
Confidence 34556678889999999999999999999999988888877765542 2223333333332222222 2233445
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...|.+|++.|++..+
T Consensus 115 ~~~~~~~~~~~~~~~~ 130 (382)
T PRK10091 115 VLSKIIKPGKVTAAVA 130 (382)
T ss_pred HHHHhCChHHhhHHHH
Confidence 6789999988876543
No 69
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.42 E-value=1.4e-06 Score=57.72 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+.........+...... ....+.......+.. ....+..+..+.+
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 332 (406)
T PRK11551 260 VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA------APSFAGMLLAGFAAG-LFVVGGQSVLYAL 332 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 344556778899999999999999999887765555444433322 112222222222222 2222334556677
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 333 ~~~~~p~~~~g~~~g 347 (406)
T PRK11551 333 APLFYPTQVRGTGVG 347 (406)
T ss_pred HHHHcchhhhhhhhh
Confidence 899999999999876
No 70
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.40 E-value=1.1e-06 Score=58.39 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+.+.||+|||+.+..+.....++....... ...+.......+.....+ ...+..+...
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i 126 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------QSIEQFTLLRFLQGIGLC-FIGAVGYAAI 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhHhh-hHHHHHHHHH
Confidence 445567778888999999999999999988887777776655432 122222222222222222 1234455667
Q ss_pred cccCCcccccccc
Q psy7008 87 SEVFPLRSVFRYH 99 (101)
Q Consensus 87 ~El~p~~~R~~~~ 99 (101)
.|.+|++.|.+..
T Consensus 127 ~~~~~~~~~~~~~ 139 (406)
T PRK15402 127 QESFEEADAIKIT 139 (406)
T ss_pred HHHhChhHHHHHH
Confidence 8999999887654
No 71
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.39 E-value=7.6e-09 Score=69.25 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+.+....+...+|+++.+++.||+|||+.+..+.....++..+...... ..+.+...+...+..... .+..+....
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~R~~~G~~~-g~~~~~~~~ 125 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---YNNFWMLLIGRFLIGFGI-GGAYVVSPI 125 (451)
T ss_pred HHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc-ccccccccc
Confidence 3456667888999999999999999999999998888888776654321 112223333333322222 223455677
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+..|..|++.|++...
T Consensus 126 ~~~E~~~~~~R~~~~~ 141 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSS 141 (451)
T ss_pred cccccccccccccccc
Confidence 8999999999987543
No 72
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.39 E-value=1.6e-06 Score=56.47 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cC-C--C-CccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KG-T--V-GSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~-~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
+..+++.++++++.||+|||+.+..+.....+....+..... .+ + + ...+.......+....... ..+....+.
T Consensus 256 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 334 (356)
T TIGR00901 256 LGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFL 334 (356)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHH
Confidence 456788999999999999999888777776665554433221 00 0 0 1112222222232333232 235566788
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|.+|++.|++.++
T Consensus 335 ~~~~p~~~~g~~~g 348 (356)
T TIGR00901 335 SKLSNPKFGATQMA 348 (356)
T ss_pred HHhcCCCccHHHHH
Confidence 99999999998765
No 73
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.37 E-value=2.1e-06 Score=56.98 Aligned_cols=87 Identities=15% Similarity=-0.020 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
..........++.++.+++.||+|||+.+..+....+++........ ..+.......+.....+.. .+.....
T Consensus 49 ~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~------~~~~ll~~r~l~Gig~~~~-~~~~~~~ 121 (393)
T PRK09705 49 LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP------QSALLLSSALLGGVGIGII-QAVMPSV 121 (393)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc------chHHHHHHHHHHHhHHHHH-hhhhhHH
Confidence 34455677788899999999999999999999999999888776532 2222333333333333322 2344445
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+| +.|++.++
T Consensus 122 ~~~~~~-~~~~~~~g 135 (393)
T PRK09705 122 IKRRFQ-QRTPLVMG 135 (393)
T ss_pred HHHHcc-ccchhHHH
Confidence 788887 66877654
No 74
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.35 E-value=1.6e-06 Score=59.31 Aligned_cols=89 Identities=11% Similarity=-0.078 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
|......+......++.+++.||+|||+.+..+.....++....... ...+..++...+.....+ ...+....
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a------~~~~~li~~r~l~G~g~~-~~~~~~~~ 117 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS------PTASWLIATRALLAIGAA-MIVPATLA 117 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44555667777888999999999999999999998888887776542 222333333333333222 22233333
Q ss_pred hecccC-Cccccccccc
Q psy7008 85 LLSEVF-PLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~-p~~~R~~~~~ 100 (101)
...+.+ |++.|+++.+
T Consensus 118 ~l~~~~~~~~~r~~~~g 134 (495)
T PRK14995 118 GIRATFTEEKQRNMALG 134 (495)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 344554 7788887654
No 75
>PRK10504 putative transporter; Provisional
Probab=98.35 E-value=1.3e-06 Score=58.92 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+++.||+|||+.+..+......+...... ....+.......+.....+ ...+....+.
T Consensus 51 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~g~~~~-~~~~~~~~~~ 123 (471)
T PRK10504 51 IVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL------SGTLNELLLARVLQGVGGA-MMVPVGRLTV 123 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 34455667788999999999999999988877766666554432 1122222333333332222 2234556678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|.+|++.|+++.+
T Consensus 124 ~~~~~~~~~~~~~~ 137 (471)
T PRK10504 124 MKIVPREQYMAAMT 137 (471)
T ss_pred HHHcCHHHHHHHHH
Confidence 89999999987654
No 76
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.35 E-value=3.6e-06 Score=57.12 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....+........ ....................+..+....+
T Consensus 316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (496)
T PRK03893 316 VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----GGANVWVLGLLLFFQQMLGQGISGLLPKL 390 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 3445567788999999999999999998877765555444332211 11121211111111112222333444556
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 391 ~~~~~~~~~~g~~~~ 405 (496)
T PRK03893 391 IGGYFDTEQRAAGLG 405 (496)
T ss_pred HHhhCCHHHhhcccc
Confidence 789999999998876
No 77
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.35 E-value=1.9e-06 Score=55.20 Aligned_cols=88 Identities=24% Similarity=0.225 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
......+...++.++.+++.||++||+ .+..+.....++....... .+.+.......+.....+ ...+....
T Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~ 288 (352)
T cd06174 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA------PSLALLLVALLLLGFGLG-FAFPALLT 288 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHh-ccchhHHH
Confidence 445667788899999999999999999 8888887777776665542 122333333333333333 33466777
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+..|..|++.|++..+
T Consensus 289 ~~~~~~~~~~~~~~~~ 304 (352)
T cd06174 289 LASELAPPEARGTASG 304 (352)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 8899999999988765
No 78
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.33 E-value=1.7e-06 Score=57.59 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
..+...+..++.+++.||+|||+.+..+.....+....+... ++.+.......+.....+ ...+....+..|.
T Consensus 55 ~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~ 127 (400)
T PRK11646 55 RQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKL 127 (400)
T ss_pred HHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 344556667889999999999999999888888877766532 122222232233222222 2234445667899
Q ss_pred CCccccccccc
Q psy7008 90 FPLRSVFRYHD 100 (101)
Q Consensus 90 ~p~~~R~~~~~ 100 (101)
+|++.|+++.+
T Consensus 128 ~~~~~~~~a~~ 138 (400)
T PRK11646 128 IRPHQRGRFFS 138 (400)
T ss_pred cCHHHHHHHHH
Confidence 99999988765
No 79
>KOG2615|consensus
Probab=98.31 E-value=3.9e-06 Score=55.98 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...-..+.+++.+..-|.+.||+|||+.++.+.+...++..+.+... +....+..-...+.+ -+.-...-++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-------~F~afv~aR~l~Gi~-kgnl~v~rAi 144 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-------NFAAFVLARFLGGIF-KGNLSVIRAI 144 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhc-cCchHHHHHH
Confidence 34456778899999999999999999999999998888776665432 222222212222222 2333456678
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|+.+.+.|+.+++
T Consensus 145 isdV~sek~r~l~ms 159 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMS 159 (451)
T ss_pred HHhhcChhhccceee
Confidence 999999999998875
No 80
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.31 E-value=2.2e-06 Score=56.72 Aligned_cols=87 Identities=15% Similarity=-0.095 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+++.........+. ..... ...-+.......+.....+ ........
T Consensus 31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~-----~~~~~~l~~~R~l~G~g~~--~~~~~~~~ 102 (368)
T TIGR00903 31 LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD-----PFNYEWLLACQLLAALGQP--FLLNAFAP 102 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH-----hccHHHHHHHHHHHHhHhH--HHHHHHHH
Confidence 3445567778999999999999999987665443333322 11111 1122222233333222222 11223344
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 103 ~~~~~~~~~r~~a~~ 117 (368)
T TIGR00903 103 AASQIREERRDLVIS 117 (368)
T ss_pred HHHHcCHHHHHHHHH
Confidence 589999999998765
No 81
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.31 E-value=1.9e-06 Score=57.87 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..+...++.++.+++.||+|||+++..+.+...+....+..... +....+.......+.....+.. .+....+.+
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~--~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~ 334 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP--EYFGYALLFLSMIVYGCAFDFF-NISGSVFVE 334 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445566788889999999999999999988877776555443110 0001112222233333333222 344455789
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+|++.|+++++
T Consensus 335 ~~~p~~~~g~~~g 347 (418)
T TIGR00889 335 KEVPVHIRASAQG 347 (418)
T ss_pred HHCCHHHHHHHHH
Confidence 9999999998875
No 82
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.30 E-value=2.7e-06 Score=57.01 Aligned_cols=90 Identities=13% Similarity=-0.021 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+..........+++++.+++.||+|||+.+..+.....++...+.... ...++. .+....+.....+. ..+...
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~----~~~~~~~~l~~~~l~G~g~g~-~~~~~~ 116 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA----EIMNYTLFLVGLFILTAGLGF-LETAAN 116 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHhhHHH-HHhhhh
Confidence 345566778889999999999999999999999988888776653321 112222 22222222222222 223334
Q ss_pred hhecccCCcccccccc
Q psy7008 84 MLLSEVFPLRSVFRYH 99 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~ 99 (101)
.+.+|+.|++.|++..
T Consensus 117 ~~~~~~~~~~~~~~~~ 132 (410)
T TIGR00885 117 PYILVMGPESTATRRL 132 (410)
T ss_pred HHHHHHCCHhHHHHHH
Confidence 4567888888877654
No 83
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.30 E-value=3.9e-06 Score=57.55 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 9 FVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
..........+++|++.|| +|||+.+..+.....++..+..... ...........+. ........+....+.+
T Consensus 58 ~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-----~~~~ll~~~~~l~-~ig~g~~~~~~~~li~ 131 (489)
T PRK10207 58 AFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-----LKPDLIFIALGTI-AVGNGLFKANPASLLS 131 (489)
T ss_pred HHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHH-HhccccccCCHHHHHH
Confidence 3444556667789999999 9999999999999888887766422 1111111222222 2222223455567789
Q ss_pred ccCCcccc
Q psy7008 88 EVFPLRSV 95 (101)
Q Consensus 88 El~p~~~R 95 (101)
|.+|++.|
T Consensus 132 ~~~p~~~~ 139 (489)
T PRK10207 132 KCYPPKDP 139 (489)
T ss_pred HhcCCCch
Confidence 99998753
No 84
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.29 E-value=1.7e-06 Score=56.03 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....+......... ..+...+...+.....+... +.....
T Consensus 43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~-~~~~~~ 115 (377)
T TIGR00890 43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD------SLAALYLTYGLASAGVGIAY-GIALNT 115 (377)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHH-HhHHHH
Confidence 44566778889999999999999999999998888887776655432 22222222222222222222 222334
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+| +.|++..+
T Consensus 116 ~~~~~~-~~~~~~~~ 129 (377)
T TIGR00890 116 AVKWFP-DKRGLASG 129 (377)
T ss_pred HHHHcC-cccHHHHH
Confidence 567777 45776543
No 85
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.27 E-value=3.1e-06 Score=55.88 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..+...++.++.+++.||+|||+.+..+............... ..+.......+.... .+..+....+..
T Consensus 61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~--~~~~~~~~~~~~ 132 (408)
T PRK09874 61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ------NIWQFLILRALLGLL--GGFVPNANALIA 132 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHh--hhhHHhHHHHHH
Confidence 345566788889999999999999999888877777666554321 222222222222222 122334445677
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+|++.|++..+
T Consensus 133 ~~~~~~~~~~~~~ 145 (408)
T PRK09874 133 TQVPRNKSGWALG 145 (408)
T ss_pred HhcCHhhhhHHHH
Confidence 9999999987654
No 86
>TIGR00895 2A0115 benzoate transport.
Probab=98.22 E-value=5.5e-06 Score=54.14 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||++||+.... .....+......... ...+.......+.....+. ..+..+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 362 (398)
T TIGR00895 290 GGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL-----FSPTLLLLLGAIAGFFVNG-GQSGLYAL 362 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445567788999999999999999954443 333333333332211 1222233333333333332 23556678
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|.+|++.|+++.+
T Consensus 363 ~~~~~~~~~~g~~~g 377 (398)
T TIGR00895 363 MALFYPTAIRATGVG 377 (398)
T ss_pred HhhcCCHHHHHHHHH
Confidence 899999999998765
No 87
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.21 E-value=4e-06 Score=58.76 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
.|.+....+...+..++.+.+.|.+|||..++.+.++..++.++.+.. +..-..++...++... .+..-...
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------~~~~~~iag~~l~Gvg--aG~~~~~~ 152 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------QNMNTFIAGMVLYGVG--AGVQELAA 152 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------CcHHHHHHHHHHHHHh--hHHHHHHH
Confidence 355666677788888999999999999999999999988888776532 2222233334444433 23333445
Q ss_pred hhecccCCcccccccc
Q psy7008 84 MLLSEVFPLRSVFRYH 99 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~ 99 (101)
...+|+.|.|.|..+.
T Consensus 153 ~~isEl~p~k~R~~~~ 168 (599)
T PF06609_consen 153 LAISELVPNKWRGLGL 168 (599)
T ss_pred HHHHHhcccchhhhHh
Confidence 5589999999998764
No 88
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.20 E-value=6.3e-06 Score=55.90 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+...++.++.+++.||++||+.................... ....+........... ...+.........
T Consensus 300 ~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~ 374 (467)
T PRK09556 300 FTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH----ATSEYMYLASLFALGF-LVFGPQLLIGVAA 374 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence 3445677889999999999999988866554333332221111111 1122222122222221 1122212223456
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|.+|++.|+++.|
T Consensus 375 ~~~~p~~~~g~a~g 388 (467)
T PRK09556 375 VGFVPKKAIGVANG 388 (467)
T ss_pred HhhcchhhHHHHHH
Confidence 79999999998876
No 89
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.20 E-value=8.2e-06 Score=54.58 Aligned_cols=89 Identities=15% Similarity=0.024 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+...++..+..+++++...+.||++||++++....+..++..+.... ++-+..++...+-....+.. -++...
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------p~f~~Ll~aR~~~g~a~G~f-~~i~~~ 124 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------PSFAVLLLARALAGLAHGVF-WSIAAA 124 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44567778889999999999999999999999999888888877653 23233333333333333332 366667
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
..+|+.|++.|+++.+
T Consensus 125 ~a~~lvpp~~~~~Aia 140 (394)
T COG2814 125 LAARLVPPGKRGRALA 140 (394)
T ss_pred HHHHHcCccchhhHHH
Confidence 7899999999998865
No 90
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.18 E-value=5.7e-06 Score=54.60 Aligned_cols=89 Identities=15% Similarity=-0.014 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....+........ ...+.......+.....+. ..+....
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~ 117 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM------VGFWSWLAWRFVAGIGCAM-IWVVVES 117 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455667788999999999999999999999888887776655432 1222333333333322222 2222223
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...|..|++.|++..+
T Consensus 118 ~~~~~~~~~~~~~~~~ 133 (381)
T PRK03633 118 ALMCSGTSRNRGRLLA 133 (381)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3467788888877654
No 91
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.17 E-value=1.4e-05 Score=54.57 Aligned_cols=87 Identities=11% Similarity=-0.086 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.........++.++++++.|| +|||+.+..+.....++...+... ...+.......+.... .....+....+
T Consensus 54 ~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~------~~~~~~~~~~~l~g~g-~g~~~~~~~~~ 126 (475)
T TIGR00924 54 FGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS------IYPDLIFYGLGTIAVG-SGLFKANPSSM 126 (475)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc------ccHhHHHHHHHHHHhc-cccccCCHHHH
Confidence 445567788999999999999 899999999998888877666532 1112222222222221 12233555667
Q ss_pred ecccCCccc---cccccc
Q psy7008 86 LSEVFPLRS---VFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~---R~~~~~ 100 (101)
.+|.+|++. |+++.+
T Consensus 127 ~a~~~~~~~~~~r~~~~~ 144 (475)
T TIGR00924 127 VGKLYERGDMPRRDGGFT 144 (475)
T ss_pred HHHhcCCCCcccccceeh
Confidence 889998754 666544
No 92
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.16 E-value=3.9e-06 Score=55.93 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
......+...+++++.+++.||+|||+.+..+.....++.......... .... +...+...+.....+.. .+....
T Consensus 57 ~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~-~~~~~~ 133 (417)
T PRK10489 57 SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLAIYLLGLWDGFFGSLG-VTALLA 133 (417)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 3455667778899999999999999998888776666655444321110 1122 22222222222222222 233345
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|..|++.|+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~ 149 (417)
T PRK10489 134 ATPALVGRENLMQAGA 149 (417)
T ss_pred hhhhccCHHHHHHHHH
Confidence 6789999998887654
No 93
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.15 E-value=5.9e-06 Score=54.62 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+...++.++.+++.||+|||+.+..+.....+........ ...+.......+.....+ ...+....+
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~-~~~~~~~~~ 120 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------HSLTVLIAASAIQGLGTG-VGGVMARTL 120 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhhhh-HHHHHHHHH
Confidence 3455667778899999999999999999988887777766655432 122222222222222221 122344455
Q ss_pred ecccCCcccccccc
Q psy7008 86 LSEVFPLRSVFRYH 99 (101)
Q Consensus 86 ~~El~p~~~R~~~~ 99 (101)
..|.+|.+.|++..
T Consensus 121 ~~~~~~~~~~~~~~ 134 (394)
T PRK11652 121 PRDLYEGTQLRHAN 134 (394)
T ss_pred HHHhcCHHHHHHHH
Confidence 67888877776654
No 94
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.14 E-value=9.1e-06 Score=52.52 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+..+++.++.+++.||.+||+....+....++......... . ..+...+...+.....+. ..+....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 326 (365)
T TIGR00900 253 LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP----P-NFPLFLVLWFAIGVGYGP-INVPQGTLL 326 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc----h-hHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3455677788899999999999999988877666665555443321 1 122333333333333332 235566678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|..|++.|++..+
T Consensus 327 ~~~~~~~~~g~~~~ 340 (365)
T TIGR00900 327 QRRVPAELLGRVFG 340 (365)
T ss_pred HHhCCHHHHHHHHH
Confidence 89999999998765
No 95
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.13 E-value=1e-05 Score=60.04 Aligned_cols=89 Identities=17% Similarity=0.026 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..+...+.+++.|+++||+|||+++................... ....+...+...+. ........+....+..
T Consensus 59 ~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~-gi~~a~~~p~~~a~l~ 134 (1140)
T PRK06814 59 AVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLM-GIHSALFGPIKYSILP 134 (1140)
T ss_pred HHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHH-HHHHHhhchHHHHhhH
Confidence 3445666788889999999999999753322221111111111110 11222333333333 3333344577788899
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|++|.+.|+++++
T Consensus 135 ~~~~~~~~~~a~~ 147 (1140)
T PRK06814 135 DHLNKDELLGANA 147 (1140)
T ss_pred hhcCccccchhhH
Confidence 9999999998876
No 96
>PRK11043 putative transporter; Provisional
Probab=98.12 E-value=1e-05 Score=53.56 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...+..+...++.++.+++.||+|||+.+..+.....+........ ...+...+...+.....+. ..+....+
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~~ 118 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------ESAAQLLVLRFVQAVGVCS-AAVIWQAL 118 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 4455667778899999999999999999988887777666655432 1222222222222222111 12333456
Q ss_pred ecccCCccccccc
Q psy7008 86 LSEVFPLRSVFRY 98 (101)
Q Consensus 86 ~~El~p~~~R~~~ 98 (101)
..|.+|++.|.+.
T Consensus 119 ~~~~~~~~~~~~~ 131 (401)
T PRK11043 119 VIDRYPAQKANRV 131 (401)
T ss_pred HHHhcCcHHHHHH
Confidence 7899998877654
No 97
>PRK10133 L-fucose transporter; Provisional
Probab=98.12 E-value=1.4e-05 Score=54.10 Aligned_cols=89 Identities=13% Similarity=-0.068 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+.+.||+|||+.+..+.....++..++..... ...-+.......+.....+.. .+....
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~~~~ll~~r~l~G~g~g~~-~~~~~~ 140 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYTLFLVGLFIIAAGLGCL-ETAANP 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 3445667888999999999999999999999999888888766532110 112222333333333333332 233444
Q ss_pred hecccCCcccccc
Q psy7008 85 LLSEVFPLRSVFR 97 (101)
Q Consensus 85 ~~~El~p~~~R~~ 97 (101)
+..|..|.+.|..
T Consensus 141 ~v~~~~~~~~~~~ 153 (438)
T PRK10133 141 FVTVLGPESSGHF 153 (438)
T ss_pred HHHHhCChhhHHH
Confidence 5678777776653
No 98
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.10 E-value=2.5e-05 Score=52.21 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
+..+...++.++.+++.||+|||+.+..+..+.++........ ...+.......+........ .+....+.+|
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~ 342 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------TGPLEVSILKLLHAFEVPFL-LVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445667889999999999999998888777777665554431 12233222223322222221 1233456789
Q ss_pred cCCcccccccc
Q psy7008 89 VFPLRSVFRYH 99 (101)
Q Consensus 89 l~p~~~R~~~~ 99 (101)
.+|++.|++..
T Consensus 343 ~~~~~~~a~~~ 353 (420)
T PRK09528 343 NFDVRLSATIY 353 (420)
T ss_pred HcCccceeeee
Confidence 99999998764
No 99
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.07 E-value=2.2e-05 Score=51.22 Aligned_cols=87 Identities=14% Similarity=-0.005 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++.... . ....+.......+.....+.. .+....
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~------~~~~~~l~~~~~~~g~g~~~~-~~~~~~ 110 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S------APGTALLFAGTALIGVGIAII-NVLLPS 110 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H------hccHHHHHHHHHHHHHHHHHH-hccchH
Confidence 34556677888999999999999999999888877666555443 1 112222222222222222222 223334
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...|.+| +.|++..+
T Consensus 111 ~~~~~~~-~~~~~~~~ 125 (355)
T TIGR00896 111 LIKRDFP-QRVGLMTG 125 (355)
T ss_pred HHHHhCc-chhhHHHH
Confidence 5678886 56776654
No 100
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.07 E-value=1.3e-05 Score=55.06 Aligned_cols=88 Identities=9% Similarity=-0.018 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
...........+..++++++.||+|-|+.+..+.+..++...+..... ......+...++...-+..+ ..+.
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~------Sl~~L~i~R~llGvaEA~~~--A~~s 137 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT------SVWHMQLMEVFYSVTMAARI--AYSS 137 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 344556677889999999999999999999999998888888776532 22344444555555544444 5566
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+..+.+|++.|+++++
T Consensus 138 yI~~WfP~kER~rats 153 (511)
T TIGR00806 138 YIFSLVPPSRYQRAAA 153 (511)
T ss_pred HHHHHCCHHHHHHHHH
Confidence 7899999999999876
No 101
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.06 E-value=2.6e-05 Score=53.36 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
..+..+...+..++.+++.||+|.|+.+..+.....+.......... +...++. ..+...+.... +..+ +.....
T Consensus 76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~--~~~~s~~~lli~r~l~Gig-g~~f-~~~~~~ 151 (462)
T PRK15034 76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ--NPNTPFGIFIVIALLCGFA-GANF-ASSMGN 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc--ccCCCHHHHHHHHHHHHHH-HHhH-HHHHHH
Confidence 33445566677778899999999999988888887777766554311 0112222 22222232222 2223 344556
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.++.||++.|+++.|
T Consensus 152 vs~wfp~~~rG~A~G 166 (462)
T PRK15034 152 ISFFFPKAKQGSALG 166 (462)
T ss_pred HHHHCCHhHhHHHHH
Confidence 899999999998765
No 102
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.04 E-value=2.6e-05 Score=51.60 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+...++.++.+++.||++||+.+..+.....++....... ...+.......+.....+... +.......
T Consensus 256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~ 328 (399)
T PRK05122 256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------PSPWMALIGAALTGFGFSLVF-PALGVEAV 328 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence 34556677888999999999999998887777666665544431 122233333333333333222 33334567
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|..|++.|+++.+
T Consensus 329 ~~~~~~~~g~~~g 341 (399)
T PRK05122 329 KRVPPQNRGAALG 341 (399)
T ss_pred HhCCHHHHHHHHH
Confidence 8999999988764
No 103
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.03 E-value=2.1e-05 Score=54.51 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+..++.++++|.++||++||++++.+.....+....+..... .+....+...+..++.....+. ..|.-....
T Consensus 51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~-~~~~~~~~Ll~~~fl~g~~~a~-~~PA~~A~i 128 (524)
T PF05977_consen 51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF-FGLLSPWLLLILTFLLGIGSAF-FNPAWQAII 128 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34445667788899999999999999999998877766555544332 0112233333333333333322 346667778
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|+.|++.-..+++
T Consensus 129 p~lV~~~~L~~A~a 142 (524)
T PF05977_consen 129 PELVPKEDLPAANA 142 (524)
T ss_pred HHhccHhhHHHHHH
Confidence 99999887665543
No 104
>PRK12382 putative transporter; Provisional
Probab=97.98 E-value=2.2e-05 Score=51.89 Aligned_cols=85 Identities=8% Similarity=-0.090 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
...+...++.++.+++.||+|||+....+.....+........ ...+.......+.....+.. .+.......|
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~ 329 (392)
T PRK12382 257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------PTAWVALAGAALTGAGCSLI-FPALGVEVVK 329 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 3445567888899999999999998887777666665544321 12222333333333333222 2334445679
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
.+|++.|+++.+
T Consensus 330 ~~~~~~~g~~~g 341 (392)
T PRK12382 330 RVPSQVRGTALG 341 (392)
T ss_pred hcCHHHHHHHHH
Confidence 999999998765
No 105
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.98 E-value=2.7e-05 Score=52.62 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.....+...++.++.+++.||+|||+.+..+.....++...+..... ...+ +.......+...+.+....+.. ..
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~ 372 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---PDTPFLAIALPQFIRGFGMGCFFMPLT-TI 372 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34456778889999999999999999988887777666665442111 1122 2222222233333322222322 33
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|..|++.|+++.+
T Consensus 373 ~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 373 ALSGLPPHKIARGSS 387 (485)
T ss_pred HHhcCCHHHHhHHHH
Confidence 567889999988765
No 106
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.98 E-value=4.3e-05 Score=49.87 Aligned_cols=83 Identities=13% Similarity=-0.028 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHh-HhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLI-SIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
....+...+..++.+.+.||+|||+.+.. +............. .+..+...+...+.. .......+....+.
T Consensus 40 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g-~~~~~~~p~~~~~~ 112 (375)
T TIGR00899 40 TGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW------NRNYFLLLVLGVLLS-SFASTANPQLFALA 112 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHH-hhhhhhHHHHHHHH
Confidence 34456677788889999999998876544 44444444443332 112122222222222 22222334445566
Q ss_pred cccCCcccccc
Q psy7008 87 SEVFPLRSVFR 97 (101)
Q Consensus 87 ~El~p~~~R~~ 97 (101)
.|..|++.|..
T Consensus 113 ~~~~~~~~~~~ 123 (375)
T TIGR00899 113 REHADRTGREA 123 (375)
T ss_pred HHHhhhcchhh
Confidence 78888777763
No 107
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.97 E-value=1.9e-05 Score=53.60 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHH-HHHHHHHhhccccchhhhec
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML-LLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~ 87 (101)
.......++.++.+++.||+|||+.++.+.....+......... ..+...... .+.....+... +.......
T Consensus 62 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~l~G~~~~~~~-~~~~~~~~ 134 (455)
T TIGR00892 62 IMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS------NVIELYLTAGFITGLGLAFNF-QPSLTMLG 134 (455)
T ss_pred HHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhcchhhh-hHHHHHHH
Confidence 34445567778899999999999999888877777666554321 111111111 12122222211 22334567
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+| +.|+++.+
T Consensus 135 ~~~~-~~r~~a~g 146 (455)
T TIGR00892 135 KYFY-RRRPLANG 146 (455)
T ss_pred HHHH-hhHHHHHH
Confidence 8886 67877654
No 108
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.97 E-value=3.9e-05 Score=50.93 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
.....+++.++.+++.||++||+....+............. . ...+.......+.....+... +....+..|.
T Consensus 261 ~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~ 333 (393)
T PRK15011 261 AAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-A-----HSPAILLGLQLLNAIYIGILG-GIGMLYFQDL 333 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34556778889999999999998777665444433322211 1 122222222222222222211 2233456899
Q ss_pred CCccccccccc
Q psy7008 90 FPLRSVFRYHD 100 (101)
Q Consensus 90 ~p~~~R~~~~~ 100 (101)
+|++ |+++.+
T Consensus 334 ~p~~-~g~~~~ 343 (393)
T PRK15011 334 MPGQ-AGSATT 343 (393)
T ss_pred CCCC-cchHHH
Confidence 9965 766543
No 109
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.95 E-value=4.4e-05 Score=49.60 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHH-HhHhHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLS-LISIGGTAFSALTCGILSY-KGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
......+...++.++.+++.||++||+.. ................... .......+...... ....+..+..+..+
T Consensus 256 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 333 (399)
T TIGR00893 256 MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV--ALGFFGLGAGAIGW 333 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH--HHHHhchhhhhHHH
Confidence 34455677889999999999999988611 1111111111111111000 00011112222111 22222333456778
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+.+|.+|++.|+++.+
T Consensus 334 ~~~~~~~~~~~~g~~~~ 350 (399)
T TIGR00893 334 ALISDNAPGNIAGLTGG 350 (399)
T ss_pred HHHHhhcChhHHHHHHH
Confidence 88999999999998765
No 110
>KOG0255|consensus
Probab=97.94 E-value=3.7e-05 Score=52.83 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.........+.........|+.|||.....+.....++.+....... ....+.......+.....+.++... +.+.
T Consensus 356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 431 (521)
T KOG0255|consen 356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---DLGGWLHWILPLLGKFFIGSAFNLI-FLYS 431 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34444577777888889999999999999999998888888777653 1111233333333333444444444 7789
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|++|+..|..+.+
T Consensus 432 ~el~pt~~r~~~~~ 445 (521)
T KOG0255|consen 432 AELIPTVVRNTAVG 445 (521)
T ss_pred HhhccHHHHHHHHH
Confidence 99999999998764
No 111
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.92 E-value=8.7e-05 Score=49.23 Aligned_cols=22 Identities=9% Similarity=-0.168 Sum_probs=18.2
Q ss_pred cchhhhecccCCcccccccccC
Q psy7008 80 AIPWMLLSEVFPLRSVFRYHDY 101 (101)
Q Consensus 80 ~~~~~~~~El~p~~~R~~~~~~ 101 (101)
+..+.+.+|.+|++.|+++.|+
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~ 320 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGA 320 (368)
T ss_pred HHHHHHHHHhcchhhcCcccch
Confidence 4456778999999999999874
No 112
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.91 E-value=6.1e-05 Score=50.46 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHH-HHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPL-SLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.....+...++.++.+++.||++||+. ............ .+... ............+..... ....+..+..
T Consensus 285 ~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 357 (412)
T TIGR02332 285 AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----TDHNLIQLLGIIMASMGS-FSAMAIFWTT 357 (412)
T ss_pred hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----cCCHHHHHHHHHHHHHHh-hhhhhHHHhh
Confidence 445567788899999999999997764 333333333322 22111 111111111111111111 1112334555
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+|++.|+++.|
T Consensus 358 ~~~~~~~~~~~~a~g 372 (412)
T TIGR02332 358 PDQSISLQARAIAIA 372 (412)
T ss_pred cccccchHHHHHHHH
Confidence 678999999998765
No 113
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.89 E-value=4.4e-05 Score=49.79 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=44.5
Q ss_pred HHHHHHHHhhc-----CchHHH-HhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008 18 SIVSMCIIKRI-----GKRPLS-LISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 18 ~~~~~~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p 91 (101)
.++.+.+.||+ |||+.+ +.+.....+....+.... .......+...............+....+.+|.+|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~ 113 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILS 113 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77889999998 788864 555555555544443221 11121111212112222222234555667899999
Q ss_pred ccccccccc
Q psy7008 92 LRSVFRYHD 100 (101)
Q Consensus 92 ~~~R~~~~~ 100 (101)
+|.|+++.+
T Consensus 114 ~~~r~~~~~ 122 (356)
T TIGR00901 114 DEELGYGST 122 (356)
T ss_pred HhhhchHHH
Confidence 999998764
No 114
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.88 E-value=3.4e-05 Score=51.31 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhc-----CchH-HHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhhec
Q psy7008 15 FIGSIVSMCIIKRI-----GKRP-LSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 15 ~~~~~~~~~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..++.+.+.||+ |||+ .+..+....+++...+.... ...+.. ......+. ..+.....+....+.+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~----~~~~~~~l~~~~~~~-~~~~~~~~~~~~al~~ 120 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP----PHAALWPLAGLAVLV-AFLSASQDIVFDAYST 120 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC----ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46778889999999 7765 67776777766666554321 112222 22222222 2333334466677889
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|.+|++.|+++.+
T Consensus 121 ~~~~~~~r~~~~~ 133 (402)
T PRK11902 121 DVLHPEERGAGAA 133 (402)
T ss_pred HhcChhhhhHHHH
Confidence 9999999987654
No 115
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.87 E-value=7.1e-05 Score=48.76 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+...++.++.+++.||+|||+....+......+...+..... .....+.............+.+. +..+...
T Consensus 267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 343 (366)
T TIGR00886 267 ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALFFFSGAGN-GSTFALV 343 (366)
T ss_pred HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHhcccc-chhhhcc
Confidence 34455677888889999999999988776665555444443332110 00022222222222333333333 4456678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|++| +.|++..|
T Consensus 344 ~~~~~-~~~g~~~g 356 (366)
T TIGR00886 344 PHIFR-RATGAVSG 356 (366)
T ss_pred hhhch-hhcccHHH
Confidence 89888 57777665
No 116
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.83 E-value=5.7e-05 Score=50.40 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+..+++.++.+++.||.++|+.+..+.....+....+.. ....+.......++....+. ..+....+.
T Consensus 265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 337 (417)
T PRK10489 265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL------MPMWILAVLCLALFGYLSAI-SSLLQYTLL 337 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34556777888889999999877777777666655555444332 11222222222223222221 124445678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|..|++.|+++.+
T Consensus 338 ~~~~p~~~~g~~~g 351 (417)
T PRK10489 338 QTQTPDEMLGRING 351 (417)
T ss_pred HhhCCHHHHHHHHH
Confidence 89999999998765
No 117
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.83 E-value=0.00022 Score=49.13 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCccc
Q psy7008 16 IGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS 94 (101)
Q Consensus 16 ~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~ 94 (101)
...++++++.|| +|||+.+..+.....++...+.... ...........+...+.+ ...+....+.+|.+|++.
T Consensus 72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----HDAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDD 145 (500)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCc
Confidence 344678999999 5999999999888877766554321 111112222222222222 123455567899998643
No 118
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.79 E-value=7.7e-05 Score=48.70 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p 91 (101)
....++.++.+++.||+|||+.+..+.............. ...+.......+.....+. ..+....+..|..|
T Consensus 246 ~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~ 318 (375)
T TIGR00899 246 GLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMP 318 (375)
T ss_pred HHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 4456677888999999999998877665544433322211 1122222222223222222 22445556789998
Q ss_pred cccccccc
Q psy7008 92 LRSVFRYH 99 (101)
Q Consensus 92 ~~~R~~~~ 99 (101)
++.+ +++
T Consensus 319 ~~~~-~~~ 325 (375)
T TIGR00899 319 GRAG-AAT 325 (375)
T ss_pred chhh-HHH
Confidence 7643 544
No 119
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.79 E-value=0.00016 Score=47.81 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
.+...++.+..+++.||++||+.+..+.....+........ ...+.......+.....+. ..+.......|..
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 340 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------QTPLQLGILRFLLGAADGA-LLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhC
Confidence 34556677778899999999998888776665554443321 1222222222233322222 2233344556788
Q ss_pred Cccccccccc
Q psy7008 91 PLRSVFRYHD 100 (101)
Q Consensus 91 p~~~R~~~~~ 100 (101)
|.+.|++..+
T Consensus 341 ~~~~~g~~~~ 350 (408)
T PRK09874 341 SNQIAGRIFS 350 (408)
T ss_pred Ccccceeeeh
Confidence 8888887764
No 120
>PRK10504 putative transporter; Provisional
Probab=97.78 E-value=0.00017 Score=48.89 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
..+...++.++.+++.||+|||+.+..+.....+...++..... ....+.......+.....+... +....+..|.
T Consensus 306 ~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~ 381 (471)
T PRK10504 306 MVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL---LGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKD 381 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence 34445566678899999999999988887766666555443211 1111111112222222222222 3344567789
Q ss_pred CCccccccccc
Q psy7008 90 FPLRSVFRYHD 100 (101)
Q Consensus 90 ~p~~~R~~~~~ 100 (101)
.|.+.|+++++
T Consensus 382 ~~~~~~g~~~~ 392 (471)
T PRK10504 382 LPDNLASSGNS 392 (471)
T ss_pred CCHHhccchHH
Confidence 99999988754
No 121
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.76 E-value=0.00028 Score=48.44 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
..+...+..+++|++.||+|+|+++..+.....++...............-+...+.+.......+.+.+++ +-++++.
T Consensus 295 ~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~ 373 (462)
T PRK15034 295 GPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVI 373 (462)
T ss_pred HHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHH
Confidence 346677788899999999999999988887776666543332210111112222222222223334444343 3357788
Q ss_pred CCc
Q psy7008 90 FPL 92 (101)
Q Consensus 90 ~p~ 92 (101)
||+
T Consensus 374 f~~ 376 (462)
T PRK15034 374 FRQ 376 (462)
T ss_pred Hhh
Confidence 874
No 122
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.0002 Score=48.44 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRI--GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
.....=..+++|++++||+.||+ |||.............+....... +..++...........++-.+++-..-
T Consensus 293 a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----~~~~~~l~~~~l~~iGf~IyGPqmLiG 368 (448)
T COG2271 293 AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----PNGSYLLDAILLFIIGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455578899999999999996 677655443333322222222211 222333333233333334445554556
Q ss_pred hhecccCCcccccccccC
Q psy7008 84 MLLSEVFPLRSVFRYHDY 101 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~~ 101 (101)
....|..|++.-+++.|+
T Consensus 369 l~a~e~~pK~AaGtA~Gf 386 (448)
T COG2271 369 LAAAEFVPKKAAGTATGF 386 (448)
T ss_pred HHHhccccHhhccchhch
Confidence 678899999999988875
No 123
>PTZ00207 hypothetical protein; Provisional
Probab=97.75 E-value=0.00015 Score=51.05 Aligned_cols=83 Identities=14% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCcccc
Q psy7008 16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSV 95 (101)
Q Consensus 16 ~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~R 95 (101)
...+++|++.||+|||+++..+.+...++.+..+...........+...+...+...+.+ ...+.......+.|| +.|
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~R 153 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNR 153 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhh
Confidence 345578999999999999999999999888877764310000122222222222222211 122233345678887 678
Q ss_pred ccccc
Q psy7008 96 FRYHD 100 (101)
Q Consensus 96 ~~~~~ 100 (101)
+++.|
T Consensus 154 G~a~G 158 (591)
T PTZ00207 154 GAVVA 158 (591)
T ss_pred HHHHH
Confidence 87665
No 124
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.71 E-value=0.00028 Score=48.38 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
...+...++.++.+++.||+|||+.+..+.....++...+..... ....+.......+.....+... +.......|
T Consensus 303 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~ 378 (495)
T PRK14995 303 PVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF---STQQWQAWGLMALLGFSAASAL-LASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhHHHHH-HHHHHHHHh
Confidence 344667788899999999999999888777766666554433211 1122222222333333333222 233445678
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
..|.+.|+.+.+
T Consensus 379 ~~~~~~~g~~~~ 390 (495)
T PRK14995 379 AAPPEKAAAAGA 390 (495)
T ss_pred cCCHHhcchHHH
Confidence 889998887654
No 125
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.70 E-value=0.00022 Score=47.71 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..+..+++.++.+++.||+|||+....+.....++....... ....+.......+.....+. ..+..+.+.+
T Consensus 264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~ 337 (437)
T TIGR00792 264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-----GSNLPLILVLIILAGFGQNF-VTGLVWALVA 337 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34467778888999999999999999888877666655544321 11222222323333333322 2355666777
Q ss_pred ccCC
Q psy7008 88 EVFP 91 (101)
Q Consensus 88 El~p 91 (101)
|..|
T Consensus 338 ~~~~ 341 (437)
T TIGR00792 338 DTVD 341 (437)
T ss_pred hhhh
Confidence 8765
No 126
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.70 E-value=8.9e-05 Score=50.90 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhc-----CchHH-HHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhhecc
Q psy7008 16 IGSIVSMCIIKRI-----GKRPL-SLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 16 ~~~~~~~~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
+..++.+.+.||+ |||+. +..+.+...++...++... ...+.. ......+. ........+....+.+|
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~----~~~~l~~l~~~~~l~-~~~~a~~~i~~~a~~~~ 134 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE----PGTQLRWLAALAVVI-AFCSASQDIVFDAWKTD 134 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC----CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5778889999999 98875 5566666655555544321 112222 22222222 22333344556678899
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
.+|++.|+++.+
T Consensus 135 ~~~~~~rg~~~~ 146 (491)
T PRK11010 135 VLPAEERGAGAA 146 (491)
T ss_pred hcChhhhHHHHH
Confidence 999999987654
No 127
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.69 E-value=8.1e-05 Score=47.94 Aligned_cols=90 Identities=26% Similarity=0.305 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+......++.++.+++.||+++|+...............+..... ............+.....+. ..+....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 324 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF---SSSPVWLIIALFLIGFGFGI-VFPILFSLI 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH---HCHHHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455666777889999999999887776666555554444332211 11122222233333333332 346667788
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
.|..|++.|++..+
T Consensus 325 ~~~~~~~~~g~~~g 338 (352)
T PF07690_consen 325 QELVPPEYRGTAFG 338 (352)
T ss_dssp HCCCHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 99999999998765
No 128
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.69 E-value=0.00023 Score=48.21 Aligned_cols=88 Identities=11% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRI--GKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
....+..+++.++.+++.||+ +||.... .......+....+. ... ....+............ ..+.......
T Consensus 296 ~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~g~~-~~~~~~~~~~ 370 (452)
T PRK11273 296 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-LNP---AGNPTVDMACMIVIGFL-IYGPVMLIGL 370 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH-Hhc---ccChHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 344566778899999999999 5554322 22222222222111 110 11112222212221111 1111122334
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+..|.+|++.|+++.|
T Consensus 371 ~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 371 HALELAPKKAAGTAAG 386 (452)
T ss_pred HHHHHcChhhhhhHHH
Confidence 5679999999998876
No 129
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.67 E-value=0.0003 Score=46.02 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHH-HHHHHHHHHHHhhccccchhhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILP-FIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.....+...++.++.+++.||++||+.+..+.....++...+..... .....+.. .....+.....+. ..+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 324 (385)
T TIGR00710 248 FALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI--LGLGSWAMIIGPMMFVGIGNSM-ISSIAMAY 324 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455677889999999999999999887776666655554433221 01111222 2222222222222 22444455
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|..|. .|+++.+
T Consensus 325 ~~~~~~~-~~g~~~~ 338 (385)
T TIGR00710 325 ALEDFPH-VAGTASA 338 (385)
T ss_pred HhccCcc-cchHHHH
Confidence 6788774 5665543
No 130
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.65 E-value=0.00031 Score=46.08 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS 44 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~ 44 (101)
.....+...++.++.+++.||+|||+.+..+.......
T Consensus 236 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 236 FALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 34455677888999999999999999888777654443
No 131
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.65 E-value=0.00021 Score=53.11 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
......+..+++.++.+++.||.++|+.+..+.+...++...+... ...+..++...++..+.+.. .+....+
T Consensus 274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 346 (1146)
T PRK08633 274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------PSLASVLVLFFLFGFSAGLF-IVPLNAL 346 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 3444556778889999999999998888777776666655544432 12222333333333333222 2344567
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|..|++.|+++.+
T Consensus 347 ~~~~~p~~~rg~~~~ 361 (1146)
T PRK08633 347 IQFRAPEKELGKVLA 361 (1146)
T ss_pred HhhcCCccchhhhhH
Confidence 789999999998765
No 132
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.64 E-value=0.00019 Score=46.60 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-chHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIG-KRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~g-rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
.....+..+++.++.+++.||.. ||+... ................. ................ ....+..+..+.
T Consensus 258 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 333 (379)
T TIGR00881 258 FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN---PAANPLMDLICLFALG-FLVYGPQMLIGV 333 (379)
T ss_pred HHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence 44556777889999999999863 333222 11111111111111110 0111112212222221 122233344456
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|+++.+
T Consensus 334 ~~~~~~~~~~~g~~~g 349 (379)
T TIGR00881 334 IASELAPKKAAGTAAG 349 (379)
T ss_pred HHHHhcCcchhHHHHH
Confidence 7899999999998765
No 133
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.58 E-value=0.00049 Score=43.66 Aligned_cols=89 Identities=11% Similarity=-0.042 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhc-cccchhhhecc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIG-IAAIPWMLLSE 88 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~E 88 (101)
.+++..+ .++.|.+.|++|.|..+..+......+...+.....+.....+.+.+.... .....+.+ .+.....-..+
T Consensus 46 ~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~-~l~~~s~~~~~ta~lvt~~~ 123 (250)
T PF06813_consen 46 GDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL-FLGGNSSCWFNTASLVTCVR 123 (250)
T ss_pred HHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH-HHHcccHHHhhhHHHHHHHH
Confidence 3444444 478899999999999999999888888777765553111112222222221 22222222 22333333558
Q ss_pred cCCcccccccccC
Q psy7008 89 VFPLRSVFRYHDY 101 (101)
Q Consensus 89 l~p~~~R~~~~~~ 101 (101)
.||. .|+++.|+
T Consensus 124 NFP~-~RG~vvgi 135 (250)
T PF06813_consen 124 NFPR-SRGTVVGI 135 (250)
T ss_pred hCcc-ccCceehh
Confidence 9984 79988763
No 134
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.58 E-value=6.4e-05 Score=53.23 Aligned_cols=48 Identities=4% Similarity=-0.106 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
++......+...+..++.+++.||.+||+.+..+.++.+++.++++..
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 345566778888999999999999999999999999999988887654
No 135
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00046 Score=46.53 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+-.+.+.+.=++.+.+.||+|.|+....+.....+-.+...... +..++.......+.....+ +.-+....+.+
T Consensus 56 aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~----~~~~~~~ll~~gll~G~~G-asFav~m~~~s 130 (417)
T COG2223 56 AIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV----TYPSTWQLLVIGLLLGLAG-ASFAVGMPNAS 130 (417)
T ss_pred HHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccc-ceehccccccc
Confidence 334455556666778999999999988887777666555554432 2222222232333332222 22234445689
Q ss_pred ccCCcccccccccC
Q psy7008 88 EVFPLRSVFRYHDY 101 (101)
Q Consensus 88 El~p~~~R~~~~~~ 101 (101)
+-||++.++.+.|+
T Consensus 131 ~~fP~~~qG~AlGI 144 (417)
T COG2223 131 FFFPKEKQGLALGI 144 (417)
T ss_pred ccCChhhhhHHHHH
Confidence 99999999988763
No 136
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.55 E-value=0.00035 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRI 28 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~ 28 (101)
.....+...++.++.+++.||+
T Consensus 285 ~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 285 VSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHhhhHHHh
Confidence 3455677889999999999998
No 137
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.54 E-value=0.00073 Score=45.58 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr 31 (101)
......+.+.++.++.+++.||++|+
T Consensus 292 ~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 292 AYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556677889999999999999643
No 138
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0003 Score=47.65 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+.+-++-.+.+.+.||.+.|..+-.+.+.+++..+.++.. ...+...++..+-..+.+.++.+ +.-..
T Consensus 70 ~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~~~~l~~lng~fQg~Gwpp-~~~~i 142 (448)
T COG2271 70 GSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------PSLFLFAVLWVLNGWFQGMGWPP-CARTI 142 (448)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhcCCCcH-HHHHH
Confidence 345566777888999999999999999999999999999988763 23333444444444555566644 44457
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+.-+|++.|++..+
T Consensus 143 ~~Wfsr~eRG~~~s 156 (448)
T COG2271 143 THWFSRKERGTWWS 156 (448)
T ss_pred HHHcCccccCceEE
Confidence 89999999998654
No 139
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.51 E-value=0.00086 Score=44.52 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
..+...++....+++.||+|||+.+..+....++....... ....+.......+........ ......+..|.
T Consensus 263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~ 335 (396)
T TIGR00882 263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF------ATTALEVVILKMLHAFEVPFL-LVGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 34556677788889999999999888877766665544332 112222222223222222111 12233356788
Q ss_pred CCcccccccc
Q psy7008 90 FPLRSVFRYH 99 (101)
Q Consensus 90 ~p~~~R~~~~ 99 (101)
.|++.|+++.
T Consensus 336 ~~~~~~at~~ 345 (396)
T TIGR00882 336 FDVRLSATIY 345 (396)
T ss_pred CCcceEEEee
Confidence 8888887754
No 140
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.49 E-value=0.00066 Score=46.44 Aligned_cols=26 Identities=4% Similarity=-0.069 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr 31 (101)
...+..+...++.++.+++.||++||
T Consensus 293 ~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 293 IAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 34456677889999999999999865
No 141
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.48 E-value=0.0004 Score=46.02 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
+..+..++...+.+++.||+|+|+++..+.....+....+... ...+.......+....++... +....+.++
T Consensus 248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~ 320 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EAFPLIFLLQILHCGTFAVCH-LAAMRYIAA 320 (382)
T ss_pred HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 4556777888888999999999999998888888777665432 222334444455555555443 334445677
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
. |++.|+++++
T Consensus 321 ~-~~~~~~~~q~ 331 (382)
T TIGR00902 321 Q-PGSEIAKLQA 331 (382)
T ss_pred C-CHhhHHHHHH
Confidence 7 8888877654
No 142
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.47 E-value=0.00074 Score=45.42 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
..+..+..+++.++.+++.||+|||+.+..+......+........ ..+.+...+...+.....+. ....++.+.
T Consensus 266 ~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ 340 (428)
T PF13347_consen 266 MLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----PGSPWLVLILFILAGIGYGA-FFVIPWAML 340 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhHhhhcc-ccccccccc
Confidence 3455677888999999999999999999999888888777766543 12344444444444444433 347788889
Q ss_pred cccCCcc
Q psy7008 87 SEVFPLR 93 (101)
Q Consensus 87 ~El~p~~ 93 (101)
+|+.+.+
T Consensus 341 ad~id~~ 347 (428)
T PF13347_consen 341 ADVIDYD 347 (428)
T ss_pred ccchhhH
Confidence 9998844
No 143
>KOG3764|consensus
Probab=97.46 E-value=0.00034 Score=47.25 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
...+.+++.+++.|.+.||+|+|..++.|...+..+..+++.. .++..++.....+...+.........+.++
T Consensus 114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvgsA~~~tsglamlAd 186 (464)
T KOG3764|consen 114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVGSAFADTSGLAMLAD 186 (464)
T ss_pred HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Confidence 4467889999999999999999999999999999888888752 233333334434433333333445567889
Q ss_pred cCCccc-cccccc
Q psy7008 89 VFPLRS-VFRYHD 100 (101)
Q Consensus 89 l~p~~~-R~~~~~ 100 (101)
.||.+. |++.+|
T Consensus 187 ~f~~d~er~~vmG 199 (464)
T KOG3764|consen 187 VFPEDNERGSVMG 199 (464)
T ss_pred HcccchhhhHHHH
Confidence 999776 577654
No 144
>KOG2532|consensus
Probab=97.43 E-value=0.0005 Score=47.23 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.....+.+++.++++++.||+|-|+++..+.++.++..++.-.... ...+..++...+-....+..+ +....+.+
T Consensus 80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----~~~~~~~~~R~lqGl~~g~~~-pa~~~i~~ 154 (466)
T KOG2532|consen 80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----IGFYLLLVLRFLQGLGQGVLF-PAIGSILA 154 (466)
T ss_pred HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----hcchhhHHHHHHhHHHHhHHH-hhhhceee
Confidence 4456778899999999999999999999999888888877665442 222333444444444444444 55556788
Q ss_pred ccCCcccccccc
Q psy7008 88 EVFPLRSVFRYH 99 (101)
Q Consensus 88 El~p~~~R~~~~ 99 (101)
+-.|++.|++..
T Consensus 155 ~W~P~~Ers~~~ 166 (466)
T KOG2532|consen 155 KWAPPNERSTFI 166 (466)
T ss_pred eECCHHHHHHHH
Confidence 999999998754
No 145
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.38 E-value=0.0012 Score=45.37 Aligned_cols=87 Identities=13% Similarity=-0.024 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
.+..+++.++++++.||+|||+.+..+.....+....+..... .....+.......+.....+.+. +..+.+..|+.
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~--~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~ 345 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI--TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLC 345 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 3567799999999999999988776665555544433322211 01111121222222222222222 22355677888
Q ss_pred Cccccccccc
Q psy7008 91 PLRSVFRYHD 100 (101)
Q Consensus 91 p~~~R~~~~~ 100 (101)
|++.+++..+
T Consensus 346 ~~~~~~t~~g 355 (491)
T PRK11010 346 NKSFSATQFA 355 (491)
T ss_pred CCCCcHHHHH
Confidence 8887776543
No 146
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.37 E-value=0.0012 Score=44.01 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
....+...++.+..+++.||++||+... .+.....+....+..... ......+.......++....+. ..+.. ...
T Consensus 264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~ 340 (402)
T TIGR00897 264 GTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ-HFGHSFAVALIIAIALGIFLAG-YVPLA-AVF 340 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHH-HHHHH-HHH
Confidence 3455778899999999999999887653 333333333222221110 0011222222233333333222 22333 345
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+|..| +.|+++.|
T Consensus 341 ~~~~~-~~~g~~~g 353 (402)
T TIGR00897 341 PTLAP-KHKGAAMS 353 (402)
T ss_pred HhhCc-chhHHHHH
Confidence 68766 47888765
No 147
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.33 E-value=0.0014 Score=44.73 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
+..+..+++.++.+++.||+|||+.+..+.....++.......... .....+...+...+.....+. ....++.+.+|
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad 351 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-APHNALLIVIAGILLNIGTAL-FWVLQVIMVAD 351 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 3446778888889999999999999887776655554443322110 011222232323333333332 23556777888
Q ss_pred cCC-----ccccccc
Q psy7008 89 VFP-----LRSVFRY 98 (101)
Q Consensus 89 l~p-----~~~R~~~ 98 (101)
..+ +..|..|
T Consensus 352 ~id~~e~~tG~R~~G 366 (473)
T PRK10429 352 TVDYGEYKLGIRCES 366 (473)
T ss_pred hhhhhhHhcCccchh
Confidence 854 5555544
No 148
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.33 E-value=0.0017 Score=43.13 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS 44 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~ 44 (101)
...+..+...++.++.+++.||+|||+.+..+.......
T Consensus 43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 455667888999999999999999999887765554443
No 149
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.31 E-value=0.00057 Score=47.10 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHh----hcCchHHHHhH-hHHHHHHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIK----RIGKRPLSLIS-IGGTAFSALTCG 49 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d----~~grr~~~~~~-~~~~~~~~~~~~ 49 (101)
...+..+..++..++.|++.| |+|||+.++.+ .....++...+.
T Consensus 44 i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~ 92 (477)
T TIGR01301 44 IWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG 92 (477)
T ss_pred HHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 345566788899999999999 59999987765 444444444443
No 150
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.24 E-value=0.0012 Score=43.69 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC 48 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~ 48 (101)
.....+...++.++.+++.||+|||+....+.....+.....
T Consensus 241 ~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 241 MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999998887776666655443
No 151
>PRK03699 putative transporter; Provisional
Probab=97.23 E-value=0.002 Score=42.79 Aligned_cols=40 Identities=8% Similarity=-0.032 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALT 47 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~ 47 (101)
....+...++.++.+++.||++||+.+........+....
T Consensus 248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999887766555554433
No 152
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0028 Score=43.78 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 12 TTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
...-..++++||+.||+ |+|+....+.++..++.+.++... ........+... .+.......-+.+..+..|++
T Consensus 72 slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl~i~L~-~I~iG~Gl~K~NiS~llg~ly 146 (498)
T COG3104 72 SLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGLYIGLA-LIIVGTGLFKPNISSLLGELY 146 (498)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHHHHHHH-HHHhccccccccHHHHHHHhc
Confidence 33456788999999995 999999999999999988877531 011112222222 222223334566666788999
Q ss_pred Ccc
Q psy7008 91 PLR 93 (101)
Q Consensus 91 p~~ 93 (101)
|++
T Consensus 147 ~~~ 149 (498)
T COG3104 147 PKD 149 (498)
T ss_pred CCC
Confidence 854
No 153
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.18 E-value=0.00044 Score=46.23 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKR----IGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAI 81 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (101)
..+..+...+..++.|++.|| +||| +.++.+.....++...+....................++...++.. ...
T Consensus 41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 119 (437)
T TIGR00792 41 FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFV-NIP 119 (437)
T ss_pred HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhh-ccc
Confidence 445557778899999999997 5664 4666776666666555543211000001112222223333333321 222
Q ss_pred hhhhecccC-Ccccccccc
Q psy7008 82 PWMLLSEVF-PLRSVFRYH 99 (101)
Q Consensus 82 ~~~~~~El~-p~~~R~~~~ 99 (101)
...+.+|+. +++.|++..
T Consensus 120 ~~al~~~~~~~~~~R~~~~ 138 (437)
T TIGR00792 120 YWSLVPAITLDPRERESLS 138 (437)
T ss_pred HhhCcccccCCHHHHHHHH
Confidence 345677887 467787654
No 154
>PRK03545 putative arabinose transporter; Provisional
Probab=97.16 E-value=0.0027 Score=42.10 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+..+++.++.+++.||.+||..... .............. ....+.......++.... ...++.......
T Consensus 248 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~ 320 (390)
T PRK03545 248 LLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPA-----ANSEWHLSVLSIFWGIAI-MCIGLAMQVKVL 320 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence 44567788999999999999998875443 33333333222111 112222223333333322 222333444566
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
|..| +.|+++.+
T Consensus 321 ~~~~-~~~~~~~g 332 (390)
T PRK03545 321 KLAP-DATDVAMA 332 (390)
T ss_pred HhCC-CcHHHHHH
Confidence 7776 46776544
No 155
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.15 E-value=0.003 Score=41.79 Aligned_cols=42 Identities=14% Similarity=0.006 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~ 49 (101)
....+...++.++.+++.||+|||+....+.....+....+.
T Consensus 246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 445667788899999999999999988888776666555444
No 156
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.13 E-value=0.0031 Score=42.86 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
....+++..+++++.+++.||+|-|+++..+.+...+.+...... ........ ..+....+..+.++.+=.+.
T Consensus 294 g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~------~~~~~f~i-~gll~g~s~G~~qA~SRSy~ 366 (438)
T COG2270 294 GIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL------EGELDFWI-LGLLVGTSLGGAQASSRSYL 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc------cccHHHHH-HHHHHHHhcchHHHHHHHHH
Confidence 345678889999999999999999998888877766665543322 12222222 22233333334556666678
Q ss_pred cccCCccccccccc
Q psy7008 87 SEVFPLRSVFRYHD 100 (101)
Q Consensus 87 ~El~p~~~R~~~~~ 100 (101)
+++.|++.-++-+|
T Consensus 367 ~~lvp~~k~~~fFg 380 (438)
T COG2270 367 ARLVPKGKEGRFFG 380 (438)
T ss_pred HHhCCCccccceee
Confidence 99999887766554
No 157
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.13 E-value=0.0022 Score=42.78 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC 48 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~ 48 (101)
...+..+...++.++.+++.||.+||+....+.....++...+
T Consensus 245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3456667889999999999999999998887766665554433
No 158
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.12 E-value=0.0013 Score=45.93 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+.....+++.++|+++..++.+|+++++++..+.+..+++...++.. ...+.......+........ .....+
T Consensus 258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------~~~~~~~~~l~l~G~~~~~~-~~~~~t 330 (524)
T PF05977_consen 258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------PSFWLALIALFLAGAAWIIA-NSSLNT 330 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34556678888888888888888988888887777777766655542 23333333333333333322 233445
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
...+..|.+.|++..+
T Consensus 331 ~~Q~~~P~~~~GRv~s 346 (524)
T PF05977_consen 331 LVQLSVPDWVRGRVFS 346 (524)
T ss_pred HHHHhCCHHHHhHHHH
Confidence 6789999999998765
No 159
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.08 E-value=0.0036 Score=41.92 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAF 43 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~ 43 (101)
...+..+...++.++.|++.||+|||+.+..+......
T Consensus 51 ~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 51 IFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44566788889999999999999999988776554443
No 160
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.06 E-value=0.00074 Score=46.12 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hcCc-hHHHHhHhHHHHHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHHhhcccc
Q psy7008 7 QIFVPTTGFIGSIVSMCIIK----RIGK-RPLSLISIGGTAFSALTCGILSYKGTVG-SQILPFIMLLLLAFFTSIGIAA 80 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 80 (101)
..+..+...+..++.|++.| |+|| |+.++.+....+++...+.... +..+. ......+...++...+.... .
T Consensus 48 ~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p-~~~~~~~~~~~~~~~~l~~~~~t~~~-i 125 (473)
T PRK10429 48 FLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH-LFEGTAQYVFVCVTYILWGMTYTIMD-I 125 (473)
T ss_pred HHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHc-c
Confidence 34455677788888999999 5587 5666777777776655543211 00011 11122333334444443322 2
Q ss_pred chhhhecccC-Ccccccccc
Q psy7008 81 IPWMLLSEVF-PLRSVFRYH 99 (101)
Q Consensus 81 ~~~~~~~El~-p~~~R~~~~ 99 (101)
-...+.+|+. +.+.|.+..
T Consensus 126 p~~al~~~lt~~~~eR~~l~ 145 (473)
T PRK10429 126 PFWSLVPTLTLDKREREQLV 145 (473)
T ss_pred hHHhhhHHhCCCHHHHHHHH
Confidence 2345678998 588887654
No 161
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.05 E-value=0.0051 Score=42.50 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch--HHHHhHhHHHHHHHHHHHHHhc---cCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKR--PLSLISIGGTAFSALTCGILSY---KGTVGSQILPFIMLLLLAFFTSIGIAAI 81 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (101)
.++..+...+|+++.+++.||+|.| +++........+.... +.... .......+...+...++ +.+..+.++.
T Consensus 323 ~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~-g~~G~~~~~~g~~~~~~f~~~a~~~-G~~~G~~qs~ 400 (477)
T PF11700_consen 323 GLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY-GLFGFWPSFFGLKSPWEFWVLAVLI-GLFMGGIQSA 400 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HHHHhhhcccCcccHHHHHHHHHHH-HHHhhhHHHH
Confidence 4566788899999999999999988 7776666555332222 12211 00112223333323333 2333345677
Q ss_pred hhhhecccCCccccccccc
Q psy7008 82 PWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 82 ~~~~~~El~p~~~R~~~~~ 100 (101)
.-.+.+|+.|+...+.-+|
T Consensus 401 sRs~~~~LiP~g~e~efFg 419 (477)
T PF11700_consen 401 SRSLFSRLIPPGREAEFFG 419 (477)
T ss_pred HHHHHHHhCCCchhhHHHH
Confidence 7778899999988766544
No 162
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.03 E-value=0.004 Score=42.04 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHH----HHHHHHHhhccccchhh
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML----LLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~ 84 (101)
+..+.+++.-...+++.+|+|-|+++..+.....+-..++.... .+.+...... .+....++... .....
T Consensus 251 l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~ 324 (400)
T PF03825_consen 251 LGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-----DPWPFIVALQLLGQLLHGLTFGLFH-AASVR 324 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence 33456677778888999999999999999988887777665431 1222222222 23455554433 33445
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
|..|..|++.|+++++
T Consensus 325 yi~~~~p~~~~at~Q~ 340 (400)
T PF03825_consen 325 YIDRIAPPELRATAQG 340 (400)
T ss_pred HHHHhCCccchHHHHH
Confidence 7899999999999886
No 163
>PRK09669 putative symporter YagG; Provisional
Probab=97.02 E-value=0.0056 Score=41.44 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
.+..+++.++.+++.||+|||+.+..+.....+......... ....+...+...+.....+ ...+.++.+.+|..
T Consensus 274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~ 348 (444)
T PRK09669 274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP----PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVV 348 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 355567778888999999999988877655443332222111 1122223333333333333 23466788888888
Q ss_pred C
Q psy7008 91 P 91 (101)
Q Consensus 91 p 91 (101)
+
T Consensus 349 d 349 (444)
T PRK09669 349 D 349 (444)
T ss_pred h
Confidence 6
No 164
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.012 Score=40.55 Aligned_cols=76 Identities=25% Similarity=0.365 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
....+++.++...+.+|+|+|+.+..+.+...++...+.... .+.....++..++.....+. ..+.+|.+.+|..
T Consensus 282 ~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~v 356 (467)
T COG2211 282 GAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----AGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTV 356 (467)
T ss_pred HHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhc-cccccHHHhcchh
Confidence 344555578888999999999999999888888877766542 22333344443444444443 3588999999876
Q ss_pred C
Q psy7008 91 P 91 (101)
Q Consensus 91 p 91 (101)
.
T Consensus 357 D 357 (467)
T COG2211 357 D 357 (467)
T ss_pred h
Confidence 4
No 165
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.91 E-value=0.0038 Score=40.78 Aligned_cols=44 Identities=5% Similarity=-0.026 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~ 49 (101)
......+..+++.++.+++.||+ +||+....+.....++...+.
T Consensus 237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 237 LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34456678889999999999999 566666666666555554443
No 166
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.88 E-value=0.0054 Score=40.64 Aligned_cols=41 Identities=17% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~ 49 (101)
+..+...+...+.+++.||+++|+.+..+.....+......
T Consensus 248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 34466777778889999999999998888777776655443
No 167
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.85 E-value=0.007 Score=40.05 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL 46 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~ 46 (101)
...+...++....+++.||++||+.+..+.....++..
T Consensus 243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI 280 (381)
T ss_pred HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999988777666655544
No 168
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0064 Score=41.23 Aligned_cols=86 Identities=22% Similarity=0.383 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.....+.+.=+.+|++.||+|.++.+......+.++......... ..+..........+.......+.+.+++ +-+.+
T Consensus 262 ~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip 340 (417)
T COG2223 262 LFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIP 340 (417)
T ss_pred HHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh-eeech
Confidence 344455555667899999999888888877777777776654332 1122333444443333344445555443 33466
Q ss_pred ccCCcccc
Q psy7008 88 EVFPLRSV 95 (101)
Q Consensus 88 El~p~~~R 95 (101)
.+||.+..
T Consensus 341 ~if~~~~G 348 (417)
T COG2223 341 VIFPKETG 348 (417)
T ss_pred HHHHhhhh
Confidence 66666443
No 169
>PRK09669 putative symporter YagG; Provisional
Probab=96.80 E-value=0.00073 Score=45.67 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh----cCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhcccc
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKR----IGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAA 80 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~----~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (101)
...+..+...+..++.|++.|| +|| |+.++.+....+++....................+...++...+.. ...
T Consensus 50 i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~-~~i 128 (444)
T PRK09669 50 MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTA-INV 128 (444)
T ss_pred HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHh-hcc
Confidence 3445556777888889999998 666 4566667666666655433221000011122333333344434433 223
Q ss_pred chhhhecccC-Cccccccc
Q psy7008 81 IPWMLLSEVF-PLRSVFRY 98 (101)
Q Consensus 81 ~~~~~~~El~-p~~~R~~~ 98 (101)
....+.+|+. +++.|.+.
T Consensus 129 p~~al~~~~t~~~~eR~~l 147 (444)
T PRK09669 129 PYCAMPGAITNDPRERHSL 147 (444)
T ss_pred hHHHhHHHhcCCHHHHHHH
Confidence 3345678988 45667653
No 170
>PRK10133 L-fucose transporter; Provisional
Probab=96.67 E-value=0.017 Score=39.35 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
....+...++.++++++.||+|||+.+..+..+.......... . . .. .......+...+.+..+ |..+....
T Consensus 302 ~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~----~-~~-~~~~~~~l~glg~~~i~-P~~~s~a~ 373 (438)
T PRK10133 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-A----G-GH-VGLIALTLCSAFMSIQY-PTIFSLGI 373 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-c----C-Ch-HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4556777899999999999999999887776665544433222 1 1 11 12222333333333322 44555566
Q ss_pred ccCCcc
Q psy7008 88 EVFPLR 93 (101)
Q Consensus 88 El~p~~ 93 (101)
|.+|++
T Consensus 374 ~~~~~~ 379 (438)
T PRK10133 374 KNLGQD 379 (438)
T ss_pred cccchh
Confidence 777654
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.64 E-value=0.017 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHhHhHHH
Q psy7008 13 TGFIGSIVSMCIIKRIGKRPLSLISIGGT 41 (101)
Q Consensus 13 ~~~~~~~~~~~l~d~~grr~~~~~~~~~~ 41 (101)
..+++.++.+++.||+|+|+.+..+....
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667888999999999999887766555
No 172
>PRK10054 putative transporter; Provisional
Probab=96.64 E-value=0.0065 Score=40.62 Aligned_cols=80 Identities=13% Similarity=-0.043 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCccc
Q psy7008 15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS 94 (101)
Q Consensus 15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~ 94 (101)
.......+++.||.+||+.+..+.....+....+... ....+........+..... ...+.......|..|++.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~ 331 (395)
T PRK10054 258 VSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----GNSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGM 331 (395)
T ss_pred eeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCccc
Confidence 3444566788999999998877776666555444321 1111222222333333322 223444556789999999
Q ss_pred cccccc
Q psy7008 95 VFRYHD 100 (101)
Q Consensus 95 R~~~~~ 100 (101)
|++..+
T Consensus 332 ~~~~~~ 337 (395)
T PRK10054 332 KASYFS 337 (395)
T ss_pred ceehHh
Confidence 887643
No 173
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.63 E-value=0.016 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008 13 TGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC 48 (101)
Q Consensus 13 ~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~ 48 (101)
...++.++.+++.||+|||+.+..+.....+....+
T Consensus 258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~ 293 (402)
T PRK11902 258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGY 293 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999988776666655554433
No 174
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.62 E-value=0.0072 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIG 39 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~ 39 (101)
....+.....++++++.++++||.+|++..+....
T Consensus 39 il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 39 ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34556678889999999999999998887665543
No 175
>KOG2504|consensus
Probab=96.62 E-value=0.0083 Score=41.82 Aligned_cols=88 Identities=8% Similarity=-0.028 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHH-HHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIM-LLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 83 (101)
|...+...+.....++.+.+.||+|.|...+.|.++...+..+..... ..|..... -.+...+++..+.+...
T Consensus 85 ~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~------~i~~l~lt~gvi~G~G~~~~~~paiv 158 (509)
T KOG2504|consen 85 WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT------SLWQLYLTFGVIGGLGLGLIYLPAVV 158 (509)
T ss_pred HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhccchhhhcchhh
Confidence 344555666777888999999999999999999998888887765532 22222221 22222333333344433
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
+ ++ .+-.|.|+.++|
T Consensus 159 i-v~-~YF~kkR~lA~G 173 (509)
T KOG2504|consen 159 I-LG-TYFEKKRALATG 173 (509)
T ss_pred h-hh-hHhHHHHHHHHh
Confidence 3 33 455666777665
No 176
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.61 E-value=0.018 Score=38.37 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI 50 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~ 50 (101)
.....++.++.+++.||++||+....+.....++......
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL 300 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999888877666655555443
No 177
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.60 E-value=0.018 Score=39.90 Aligned_cols=86 Identities=10% Similarity=-0.045 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+.+.+..+...+..++.|-++|+-++||.++ .......++...+.... ....+...++..+-...+..+. ....
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~----~~~~~~~~~l~iia~v~~~~~~-vfyn 148 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS----PGQWWLALVLFIIANVGYEASN-VFYN 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3455666777778888888999988666444 44455555555554432 2222344444444444444432 4455
Q ss_pred hhecccCCcccc
Q psy7008 84 MLLSEVFPLRSV 95 (101)
Q Consensus 84 ~~~~El~p~~~R 95 (101)
.+.+|+.+.+.+
T Consensus 149 a~LP~la~~~~~ 160 (477)
T PF11700_consen 149 AYLPDLARPEPR 160 (477)
T ss_pred HHhHhhcCCChh
Confidence 678888887766
No 178
>PRK11043 putative transporter; Provisional
Probab=96.58 E-value=0.021 Score=37.93 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSA 45 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~ 45 (101)
.+...++.+..+++.||++||+...........+.
T Consensus 248 ~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 248 TIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 45566778888899999998886655544444433
No 179
>KOG4686|consensus
Probab=96.56 E-value=0.0099 Score=39.21 Aligned_cols=87 Identities=16% Similarity=0.023 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
......+..+.+++.+.+.||+||+..++.+.....+.....-.. +...+|..+....+ .++. ..+..|..+
T Consensus 306 ~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGL---sysl-lAcslWP~v 377 (459)
T KOG4686|consen 306 LSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGL---SYSL-LACSLWPCV 377 (459)
T ss_pred hhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhh---hHHH-HHHHHhhhh
Confidence 344556677888889999999999988777665554444332221 14455555444443 2222 123456667
Q ss_pred cccCCcccccccccC
Q psy7008 87 SEVFPLRSVFRYHDY 101 (101)
Q Consensus 87 ~El~p~~~R~~~~~~ 101 (101)
+-+.|.+.-+++.|+
T Consensus 378 a~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 378 ASLVPEEQLGTAYGF 392 (459)
T ss_pred hhhCCHHHhcchHHH
Confidence 778888877777653
No 180
>PRK11462 putative transporter; Provisional
Probab=96.54 E-value=0.013 Score=40.09 Aligned_cols=34 Identities=15% Similarity=-0.027 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHH
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTA 42 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~ 42 (101)
+..+..+++.++++++.||+++|+....+.....
T Consensus 271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~ 304 (460)
T PRK11462 271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA 304 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4456677888899999999999988765544333
No 181
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.54 E-value=0.021 Score=38.05 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHH
Q psy7008 14 GFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSAL 46 (101)
Q Consensus 14 ~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~ 46 (101)
...+.+.+++ .||+|||+.++ .+.....+...
T Consensus 65 ~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 65 ILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 3445555566 99999987654 44444334333
No 182
>KOG2563|consensus
Probab=96.48 E-value=0.025 Score=38.99 Aligned_cols=94 Identities=15% Similarity=-0.027 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH--HHHHHHHHHHHHHhhccccch
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI--LPFIMLLLLAFFTSIGIAAIP 82 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 82 (101)
|.++++.+++++..+.+.|+.||.|-|...+.+....++++.+=.....+......+ .....-.+-.... ...-..|
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq-~Fim~lP 161 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQ-PFILGLP 161 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhh-hHhhccc
Confidence 678889999999999999999999999999999998888887655443321111111 2222111111111 1111223
Q ss_pred hhhecccCCcccccccc
Q psy7008 83 WMLLSEVFPLRSVFRYH 99 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~~ 99 (101)
.-..+--||++.|+.+.
T Consensus 162 skiA~~WF~~~qra~A~ 178 (480)
T KOG2563|consen 162 SKIAAVWFPPDQRAIAT 178 (480)
T ss_pred cHHHHhhCCcchhhhhh
Confidence 33455668888888765
No 183
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.46 E-value=0.011 Score=40.32 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CchHHHHhH--hHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRI--GKRPLSLIS--IGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
.+.++..+++.++.+++.||. ++|+....+ ....+........ ....+.......++....+ ...+..+
T Consensus 283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~~~~~~i~~~~~G~~~g-~~~~~~~ 355 (455)
T TIGR00892 283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL------AGDYTGLVIYCIFFGLSFG-SVGALLF 355 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHhc-hHHHHHH
Confidence 345566677778889999973 334333222 2222222222211 1122222232333333322 2234455
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
....|.+|.+.|+++.+
T Consensus 356 ~~~~~~~~~~~~g~~~g 372 (455)
T TIGR00892 356 EVLMDLVGAQRFSSAVG 372 (455)
T ss_pred HHHHHHhhHHHHhhHHh
Confidence 66789999999888765
No 184
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.40 E-value=0.034 Score=37.59 Aligned_cols=44 Identities=7% Similarity=-0.112 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTC 48 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~ 48 (101)
+......+..++++++.+.+.||+|| |+.+..+.....+.....
T Consensus 42 l~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 42 WVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999965 667776666665554443
No 185
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.40 E-value=0.014 Score=44.01 Aligned_cols=94 Identities=12% Similarity=-0.119 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc---c-----------CCCCccHHHHHHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY---K-----------GTVGSQILPFIMLLLLA 71 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~l~~ 71 (101)
......++.+++.++.+++.|+..+++.+..+..+..+....+..... . ......+...+...++.
T Consensus 266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence 345556777889999999998777666555555444444433332100 0 00022233333333333
Q ss_pred HHHhhccccchhhhecccCCccccccccc
Q psy7008 72 FFTSIGIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 72 ~~~~~~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
.+.+. ..+....+..|..|.+.|++..|
T Consensus 346 ~~~~~-~~~~~~~~~~~~~p~~~~G~v~g 373 (1140)
T PRK06814 346 AAGGL-YIVPLFAALQAWANPAHRARVIA 373 (1140)
T ss_pred HHHHH-hHHHHHHHHHhhCCcccceeeeH
Confidence 33222 22345567889999999998876
No 186
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.38 E-value=0.043 Score=38.08 Aligned_cols=91 Identities=18% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHHHHHhc-cCC--------------CCccHHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTCGILSY-KGT--------------VGSQILPFIMLLLL 70 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~l~ 70 (101)
..+..+...+.+++-.++.+|+|+ |.....+.++.+++......... +++ ....+..+..+...
T Consensus 311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (477)
T TIGR01301 311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence 344556666777777888999985 66767777776666665543321 000 00024555555555
Q ss_pred HHHHhhccccchhhhecccCCccccccc
Q psy7008 71 AFFTSIGIAAIPWMLLSEVFPLRSVFRY 98 (101)
Q Consensus 71 ~~~~~~~~~~~~~~~~~El~p~~~R~~~ 98 (101)
.+.++.. .++|+.+.+|..|++.|+.|
T Consensus 391 Gi~~A~~-~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 391 GIPLAIT-YSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred hHHHHHH-HHHhHHHHHHHccccCCCCc
Confidence 5555543 48899999999997666544
No 187
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.36 E-value=0.018 Score=39.86 Aligned_cols=93 Identities=14% Similarity=-0.028 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-CCC-CccHHHHHHHHHHHHHHhhccc
Q psy7008 7 QIFVPTTGFIGSIVSM----CIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-GTV-GSQILPFIMLLLLAFFTSIGIA 79 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~----~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~l~~~~~~~~~~ 79 (101)
+.+..+...+..++.. ++.||.+.++.+..+.++.+++...+..... . ++. ...++.+....+...+ .....
T Consensus 322 ~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g-e~~~~ 400 (500)
T PRK09584 322 QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG-ELMIS 400 (500)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH-HHHHh
Confidence 3344444445545543 4444444446677777777777766554332 1 111 1223333333333322 33345
Q ss_pred cchhhhecccCCccccccccc
Q psy7008 80 AIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 80 ~~~~~~~~El~p~~~R~~~~~ 100 (101)
|....+..+..|++.|++.+|
T Consensus 401 p~g~s~~~~~aP~~~rg~~~g 421 (500)
T PRK09584 401 GLGLAMVAQLVPQRLMGFIMG 421 (500)
T ss_pred HHHHHHHHHhCcHHHHHHHHH
Confidence 666677889999999998875
No 188
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.34 E-value=0.042 Score=36.83 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHH-hhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCc
Q psy7008 14 GFIGSIVSMCII-KRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPL 92 (101)
Q Consensus 14 ~~~~~~~~~~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~ 92 (101)
........++.. ||.+.|+.+..+.....+...++... ...+.......++...... ..+....+..|..|+
T Consensus 256 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~ 328 (400)
T PRK11646 256 SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------SNLQQLFTLICLFYIGSII-AEPARETLSASLADA 328 (400)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCc
Confidence 333333334444 45665655556655555555444321 1122222222233332222 224445678899999
Q ss_pred cccccccc
Q psy7008 93 RSVFRYHD 100 (101)
Q Consensus 93 ~~R~~~~~ 100 (101)
+.|++..+
T Consensus 329 ~~~g~~~g 336 (400)
T PRK11646 329 RARGSYMG 336 (400)
T ss_pred ccchhhhh
Confidence 99998765
No 189
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.30 E-value=0.025 Score=38.16 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p 91 (101)
....+|-++++++.||+++|+.+........+......... . ........+...+.+..+ |..+....|..+
T Consensus 280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~------~-~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g 351 (410)
T TIGR00885 280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG------G-HVGLYCLTLCSAFMSLMF-PTIYGIALKGLG 351 (410)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------C-hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 44578889999999999999988777766666655544311 1 122233333334444444 666667778888
Q ss_pred ccccc
Q psy7008 92 LRSVF 96 (101)
Q Consensus 92 ~~~R~ 96 (101)
++.+.
T Consensus 352 ~~~~~ 356 (410)
T TIGR00885 352 QDTKY 356 (410)
T ss_pred hhhhh
Confidence 77654
No 190
>PRK09848 glucuronide transporter; Provisional
Probab=96.26 E-value=0.032 Score=37.80 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p 91 (101)
+..+++.++.+++.||+|+|+.+..+..+..++...+.... ....+.......+...+.+.. .+..+...+|..|
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~ 349 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS----VWSLPVALVALAIASIGQGVT-MTVMWALEADTVE 349 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 44567788889999999999999888877666655443211 112222222222233332222 3445666777776
Q ss_pred cc
Q psy7008 92 LR 93 (101)
Q Consensus 92 ~~ 93 (101)
.+
T Consensus 350 ~~ 351 (448)
T PRK09848 350 YG 351 (448)
T ss_pred hh
Confidence 43
No 191
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.23 E-value=0.035 Score=32.86 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...+......+.+++.+.+.+++|.|+.+..+.+...+....... ...+.......+.....+.-|. ..-.+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------~~~~~l~~~s~l~G~~~a~lW~-aqg~y 113 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------PNSYTLYPASALLGFGAALLWT-AQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhHHhhH-hhhHH
Confidence 455666777888899999999999999998888776544333221 2233333333333334343342 22335
Q ss_pred ecccCCcccccccc
Q psy7008 86 LSEVFPLRSVFRYH 99 (101)
Q Consensus 86 ~~El~p~~~R~~~~ 99 (101)
..|..+++.|++-.
T Consensus 114 lt~~s~~~~~~~~~ 127 (156)
T PF05978_consen 114 LTSYSTEETIGRNT 127 (156)
T ss_pred HHHcCCHHHHhhHH
Confidence 66777777776644
No 192
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.15 E-value=0.02 Score=39.59 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHH-------HHhHhHHHHHHHHHHHHHh--c-cCCCC-ccHHHHHHHHHHHHHHh
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPL-------SLISIGGTAFSALTCGILS--Y-KGTVG-SQILPFIMLLLLAFFTS 75 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~l~~~~~~ 75 (101)
+.+..+..++.+++.+++.||.+||+. +..|.++.+++........ . +.+.. ..++.+....+...+..
T Consensus 315 ~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~ 394 (489)
T PRK10207 315 QALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGEL 394 (489)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 334445566777778899999998863 5566666666654332111 1 11111 22333333333333332
Q ss_pred hccccchhhhecccCCccccccccc
Q psy7008 76 IGIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 76 ~~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
. ..+....+..+..|++.++.+++
T Consensus 395 ~-~~~~g~~~~~~~aP~~~~g~~~g 418 (489)
T PRK10207 395 F-ISALGLAMIAALVPQHLMGFILG 418 (489)
T ss_pred H-HhHHHHHHHHHhChHHHHHHHHH
Confidence 2 23445566778899999887765
No 193
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.09 E-value=0.05 Score=35.40 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL 46 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~ 46 (101)
........++.+++.++.||+++|+.+..+.....+...
T Consensus 185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 445566778999999999999988888777666665543
No 194
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.06 E-value=0.039 Score=37.40 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI 50 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~ 50 (101)
+.-..+++..++|+.+++++.|| +.|+.+.............+..
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~ 295 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999 8888777776666666665544
No 195
>PRK11462 putative transporter; Provisional
Probab=96.03 E-value=0.015 Score=39.84 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----cCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKR----IGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAI 81 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (101)
..+..+...+..++.|.++|| +||| +.++.+.+..+++...+................+...++...+.... .-
T Consensus 51 ~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~-ip 129 (460)
T PRK11462 51 FLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVN-IP 129 (460)
T ss_pred HHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHh-cc
Confidence 344556677888999999996 5765 56666767777766554432110011112223344444444444332 22
Q ss_pred hhhhecccCC-ccccccccc
Q psy7008 82 PWMLLSEVFP-LRSVFRYHD 100 (101)
Q Consensus 82 ~~~~~~El~p-~~~R~~~~~ 100 (101)
.+.+.+|+.+ .+.|.+..+
T Consensus 130 y~al~~~lt~d~~eRt~l~s 149 (460)
T PRK11462 130 YCALGGVITNDPTQRISLQS 149 (460)
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 3457889888 777776543
No 196
>KOG0253|consensus
Probab=95.91 E-value=0.01 Score=40.41 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.+........+++..-+...|++|||+.+.......+....+-+. ..+-...+++..+.. ++.+..|....+
T Consensus 118 lt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~------spnf~~L~~f~~l~~--~g~gg~pv~~~~ 189 (528)
T KOG0253|consen 118 LTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA------SPNFASLCVFRALWG--FGVGGLPVDSAI 189 (528)
T ss_pred HHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC------CCCeehhhHHHHHHh--ccCCCccHhHHH
Confidence 444555666788888888999999999887777666555544322 223233334444433 344434555555
Q ss_pred ecccCCcccccc
Q psy7008 86 LSEVFPLRSVFR 97 (101)
Q Consensus 86 ~~El~p~~~R~~ 97 (101)
-.|..|...|.+
T Consensus 190 yle~lp~~~r~~ 201 (528)
T KOG0253|consen 190 YLEFLPSSHRWL 201 (528)
T ss_pred HHHhccCcCCCc
Confidence 679999988875
No 197
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.87 E-value=0.044 Score=37.38 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.+.+.-+.+.+.-.+..++.+|+|.|+.++.+..+..+-....+.. ...+.....-.+...-+.... ....-|
T Consensus 264 l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~------~~~~~i~~~klLH~~e~~l~l-va~fkY 336 (412)
T PF01306_consen 264 LWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA------TNPWVISLIKLLHALEFPLLL-VAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh------cchHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3455567778888888999999999999999888887776665542 234444444444444443332 223346
Q ss_pred ecccCCccccccc
Q psy7008 86 LSEVFPLRSVFRY 98 (101)
Q Consensus 86 ~~El~p~~~R~~~ 98 (101)
.++.+|+|..++.
T Consensus 337 I~~~fd~rlsAt~ 349 (412)
T PF01306_consen 337 ITAHFDKRLSATL 349 (412)
T ss_dssp HHHHS-GGGHHHH
T ss_pred HHHhCCHhHHHHH
Confidence 7899999987654
No 198
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.05 Score=37.04 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhcc-ccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGI-AAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 84 (101)
.........+..++..+++.+|+|+|.-++.+..+..+++.++.-.. .......+...++....+.+. .+....
T Consensus 53 iqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-----~~~~y~~FL~~lFila~Gi~~LetaaNp 127 (422)
T COG0738 53 IQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-----SSKSYGFFLVALFILASGIGLLETAANP 127 (422)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHhhhHHHHhccch
Confidence 44556677889999999999999999999999999999988875322 122233344444444444432 333444
Q ss_pred hecccCCc
Q psy7008 85 LLSEVFPL 92 (101)
Q Consensus 85 ~~~El~p~ 92 (101)
+.+.+.|+
T Consensus 128 ~v~~lg~~ 135 (422)
T COG0738 128 YVTLLGKP 135 (422)
T ss_pred HHHHhCCc
Confidence 56666665
No 199
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.79 E-value=0.054 Score=37.79 Aligned_cols=97 Identities=8% Similarity=-0.052 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCc--hH----H-HHhHhHHHHHHHHHHHHHhc--cCCCCccHHHHHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGK--RP----L-SLISIGGTAFSALTCGILSY--KGTVGSQILPFIMLLLLAFFT 74 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~gr--r~----~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 74 (101)
.+.+.+..+..++.+++..++=.|.+| |. . +..+.++.+++...+..... +++...+...++...+.....
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 455667777777777776666555532 21 1 45566666666655543322 122222222233333333344
Q ss_pred hhccccchhhhecccCCccccccccc
Q psy7008 75 SIGIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 75 ~~~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
.....|+.....+++.|++.|+..+|
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg 416 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTG 416 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHH
Confidence 55567888888999999999998765
No 200
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.78 E-value=0.054 Score=36.25 Aligned_cols=33 Identities=12% Similarity=-0.041 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISI 38 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~ 38 (101)
......+..+++++..+++.||.++|+....+.
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 344555677888888899999888887766654
No 201
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.71 E-value=0.002 Score=43.39 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHh----hcCchH-HHHhHhHHHHHHHHHHHHH-hccCCC-CccHHHHHHHHHHHHHHhhcccc
Q psy7008 8 IFVPTTGFIGSIVSMCIIK----RIGKRP-LSLISIGGTAFSALTCGIL-SYKGTV-GSQILPFIMLLLLAFFTSIGIAA 80 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d----~~grr~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 80 (101)
.+..+...+..++.|.+.| |+|||+ .++.+.....++..++... ..+.+. .......+...++...++.. ..
T Consensus 44 ~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~-~i 122 (428)
T PF13347_consen 44 LVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFV-QI 122 (428)
T ss_pred HHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhc-cC
Confidence 3444556666678888899 788665 5566777777777666543 110011 11122244444444444443 23
Q ss_pred chhhhecccCC-cccccccc
Q psy7008 81 IPWMLLSEVFP-LRSVFRYH 99 (101)
Q Consensus 81 ~~~~~~~El~p-~~~R~~~~ 99 (101)
....+.+|+.+ ++.|.+..
T Consensus 123 ~~~al~~~lt~~~~~R~~l~ 142 (428)
T PF13347_consen 123 PYNALIPELTPDPDERTRLS 142 (428)
T ss_pred chhhcCccccccHhhhhhHH
Confidence 34567889998 46777654
No 202
>KOG2533|consensus
Probab=95.64 E-value=0.11 Score=36.31 Aligned_cols=90 Identities=13% Similarity=-0.086 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+..+.+..+...++.++++.+.||++-++.+....+..++..+..... .+.+..++...+...+-+.++ |...
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl~es~~w-P~~~ 156 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGLFESGGW-PGVV 156 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhcccc-hHHH
Confidence 456778889999999999999999995555554444444444333221 122334444444444444445 5555
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
.+.+.-|..+.|++-++
T Consensus 157 ~~lg~wy~~~e~g~r~~ 173 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMG 173 (495)
T ss_pred HHHHhhcChhhhhhhHH
Confidence 66888888888887654
No 203
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.62 E-value=0.041 Score=33.95 Aligned_cols=86 Identities=22% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (101)
.....+....+.++.+.+.||.|||+....+............... ....+............ .....+....+.
T Consensus 45 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 119 (338)
T COG0477 45 LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP----NVGLALLLILRLLQGLG-GGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 3344555666678899999999999777766654233322222111 11112222222221111 112335556678
Q ss_pred cccCCc-ccccc
Q psy7008 87 SEVFPL-RSVFR 97 (101)
Q Consensus 87 ~El~p~-~~R~~ 97 (101)
+|.+|. +.|+.
T Consensus 120 ~~~~~~~~~~~~ 131 (338)
T COG0477 120 SEWFPEATERGL 131 (338)
T ss_pred HHhcCchhHHHH
Confidence 888887 44443
No 204
>KOG1330|consensus
Probab=95.56 E-value=0.034 Score=38.51 Aligned_cols=92 Identities=17% Similarity=0.018 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CchHHHHhHhHHHHHHHHHHHH---HhccCCCCccHHHHHHHHHHHHHHhhcccc
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRI----GKRPLSLISIGGTAFSALTCGI---LSYKGTVGSQILPFIMLLLLAFFTSIGIAA 80 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~----grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (101)
.+...++.+|.++++.+.||+ .|-.......+....+...... ...+......+..++++.+.......++++
T Consensus 290 ~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~ 369 (493)
T KOG1330|consen 290 GVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWAT 369 (493)
T ss_pred hHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccc
Confidence 344566788888888899883 2212222222222222221111 111111223333444444444444444544
Q ss_pred chhhhecccCCccccccccc
Q psy7008 81 IPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 81 ~~~~~~~El~p~~~R~~~~~ 100 (101)
... ...|..|++.|+++.+
T Consensus 370 n~~-i~l~vV~p~~Rt~a~a 388 (493)
T KOG1330|consen 370 NNP-IFLEVVPPSRRTTAYA 388 (493)
T ss_pred ccc-eeeEecCcccccHHHH
Confidence 444 4679999999998764
No 205
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.48 E-value=0.14 Score=33.92 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr 31 (101)
..+..+...++.++.+.+.||+|||
T Consensus 45 ~~~~~l~~~l~~~~~g~l~dr~g~~ 69 (382)
T PRK11128 45 LGAGLVARFLGSLLIAPRVKDPSQL 69 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcch
Confidence 4445566778888899999999984
No 206
>KOG3762|consensus
Probab=95.45 E-value=0.017 Score=40.75 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF 90 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~ 90 (101)
-...++.-+++.++++|+|+-+.+..+..+...-...+.. -++.|..+-+=.+-.+..+..|.+ .-.|.+...
T Consensus 416 ~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~------L~n~W~vLPieilqgit~aliWaa-~~sY~s~va 488 (618)
T KOG3762|consen 416 HAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY------LQNPWMVLPIEILQGITHALIWAA-IISYASHVA 488 (618)
T ss_pred ccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH------hcCchheeeHHHHHHHHHHHHHHH-HHHHHHhhC
Confidence 3555677778889999999999999988887777665544 345565555555556666665633 334789999
Q ss_pred Cccccccccc
Q psy7008 91 PLRSVFRYHD 100 (101)
Q Consensus 91 p~~~R~~~~~ 100 (101)
|++.|+++++
T Consensus 489 Pp~l~at~Q~ 498 (618)
T KOG3762|consen 489 PPGLRATAQG 498 (618)
T ss_pred CCcchHHHHH
Confidence 9999998875
No 207
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.43 E-value=0.065 Score=36.94 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCc-----hHHH--HhHhHHHHHHHHHHHHHhc--cCCCC-ccHHHHHHHHHHHHHHh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGK-----RPLS--LISIGGTAFSALTCGILSY--KGTVG-SQILPFIMLLLLAFFTS 75 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~ 75 (101)
...+..+..++..++..++..|.+| +... ..|.++.+++......... ++... ..++.+....+.... .
T Consensus 317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g-e 395 (475)
T TIGR00924 317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG-E 395 (475)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH-H
Confidence 3444444455554443333333333 3333 5566666666655543211 11112 233333333333333 3
Q ss_pred hccccchhhhecccCCccccccccc
Q psy7008 76 IGIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 76 ~~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
....+..+.+.+|..|++.|++.+|
T Consensus 396 ~~~~p~~~~~~~~~aP~~~~g~~~g 420 (475)
T TIGR00924 396 LMISPLGLSWWTKIAPQRLMGQMLG 420 (475)
T ss_pred HHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 3345777778899999999998765
No 208
>KOG2816|consensus
Probab=95.38 E-value=0.03 Score=38.74 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
.+...++.+..-|.+.|++|||..+......+.+......... |+..+...+.. .+.. ..+....+.++.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--------~~~~~~~~l~g-~~~~-~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--------YWFFLLLGLSG-GFSA-IFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--------HHHhhhccccc-chhh-hhhhhhhheeec
Confidence 4567788888889999999999999888887776666554321 22222111111 1111 123445678888
Q ss_pred CCccccccccc
Q psy7008 90 FPLRSVFRYHD 100 (101)
Q Consensus 90 ~p~~~R~~~~~ 100 (101)
...+.|....|
T Consensus 141 s~~~~R~~~~g 151 (463)
T KOG2816|consen 141 SSEEERSSSIG 151 (463)
T ss_pred cchhHHHHHHH
Confidence 88888877654
No 209
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=95.37 E-value=0.3 Score=32.79 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL 46 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~ 46 (101)
.+...+...+.+.+.||+|||+.-+...+....+++
T Consensus 79 f~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl 114 (354)
T PF05631_consen 79 FASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL 114 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 345566677778899999999977666666665554
No 210
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.95 E-value=0.28 Score=32.60 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPL 33 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~ 33 (101)
........++.++.+.+.||.|||..
T Consensus 46 s~~~~~~~~~~~~~g~l~d~~~~~~~ 71 (382)
T TIGR00902 46 GAALIARFAGGLFFAPLIKDANHIII 71 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34456667788888999999998643
No 211
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=94.88 E-value=0.22 Score=33.04 Aligned_cols=18 Identities=17% Similarity=-0.062 Sum_probs=10.5
Q ss_pred cchhhhecccCCccccccc
Q psy7008 80 AIPWMLLSEVFPLRSVFRY 98 (101)
Q Consensus 80 ~~~~~~~~El~p~~~R~~~ 98 (101)
+....+..|.+| +.|++.
T Consensus 318 ~~~~~~~~~~~~-~~~g~~ 335 (394)
T PRK11652 318 PLATSGAMEPFP-YLAGTA 335 (394)
T ss_pred HHHHHHHHhhcc-ccchHH
Confidence 444455678887 355554
No 212
>PRK09848 glucuronide transporter; Provisional
Probab=94.86 E-value=0.058 Score=36.58 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc----CchH-HHHhHhHHHHHHHHH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRI----GKRP-LSLISIGGTAFSALT 47 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~----grr~-~~~~~~~~~~~~~~~ 47 (101)
...+..+...+..++.|++.||. |||+ .+..+.+...+....
T Consensus 49 ~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 49 MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 34455677788999999999986 6665 445555545444443
No 213
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.68 E-value=0.22 Score=33.88 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr 31 (101)
...+..+...++.++++++.||.++|
T Consensus 302 ~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 302 LSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455677788999999999987644
No 214
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=94.35 E-value=0.38 Score=25.61 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
.+......+.+++|++...++.++.++++.+..+.+...++...++..
T Consensus 30 g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 30 GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999998888777888888888888887777654
No 215
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=94.01 E-value=0.6 Score=31.30 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
....+..+++.++.+++.||.+|+.
T Consensus 259 ~~~~~~~iig~~~~~~l~~r~~~~~ 283 (394)
T PRK10213 259 LSFGIASFVGTSLSSFILKRSVKLA 283 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhH
Confidence 3445677888888899999854443
No 216
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.77 E-value=0.14 Score=35.56 Aligned_cols=89 Identities=18% Similarity=0.083 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 9 FVPTTGFIGSIVSMCIIKR----IGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~----~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+.-+...+..++.|.+.|| +|| |+.++.+.+..++...++..........+.....+...++...++...-| ..
T Consensus 56 v~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniP-y~ 134 (467)
T COG2211 56 VARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIP-YG 134 (467)
T ss_pred HHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCc-hh
Confidence 3345566778888889986 554 56777777877777776654331122234445556677777777664322 23
Q ss_pred hhecccCC-ccccccc
Q psy7008 84 MLLSEVFP-LRSVFRY 98 (101)
Q Consensus 84 ~~~~El~p-~~~R~~~ 98 (101)
++.+|+.+ ++.|.+-
T Consensus 135 al~~~iT~d~~ER~~l 150 (467)
T COG2211 135 ALGPEITQDPQERASL 150 (467)
T ss_pred hcchhhcCCHHHHHHH
Confidence 46778876 4555543
No 217
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=93.57 E-value=0.97 Score=31.26 Aligned_cols=85 Identities=9% Similarity=-0.048 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
.+.+..+...+-.++-|..+|+.|+| +.+-....+..++...+..... ....+..+.++.+-...+..+ +.....
T Consensus 63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~---~s~~~~~l~~~il~~i~~~~s-~Vfyds 138 (438)
T COG2270 63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP---GSYLLLLLLFLILASIGFEFS-NVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHhcchh-heehhh
Confidence 44555666666777778899998855 4555555555566555554331 123333444444444444332 233445
Q ss_pred hecccCCccc
Q psy7008 85 LLSEVFPLRS 94 (101)
Q Consensus 85 ~~~El~p~~~ 94 (101)
+..++.+++.
T Consensus 139 ~L~~~~~k~~ 148 (438)
T COG2270 139 MLPRLTTKDN 148 (438)
T ss_pred HhhhhcCccc
Confidence 5666666543
No 218
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.49 E-value=0.086 Score=36.31 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c-CCC-CccHHHHHHHHHHHHHHhhccccc
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K-GTV-GSQILPFIMLLLLAFFTSIGIAAI 81 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 81 (101)
.....++..+++....+++.+|++.|+.+..+................ . ... ...+.......+....++....+.
T Consensus 293 ~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~ 372 (468)
T TIGR00788 293 SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF 372 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH
Confidence 345566888899999999999999999998888777766543221110 0 000 112222222333344444444333
Q ss_pred hhhhecccCCccccccccc
Q psy7008 82 PWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 82 ~~~~~~El~p~~~R~~~~~ 100 (101)
..+..|+.|++.+++.++
T Consensus 373 -~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 373 -LVLLARLCPSGCESSVFA 390 (468)
T ss_pred -HHHHHHhCCCCceehHHH
Confidence 556889999999988765
No 219
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=93.32 E-value=0.86 Score=31.00 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-chHHHHhHhHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIG-KRPLSLISIGGTAFSALT 47 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~g-rr~~~~~~~~~~~~~~~~ 47 (101)
..+..+..++++++-+.+.||.+ +|+.+....+...+....
T Consensus 43 ~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 43 LAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 44556778889999999999986 455665555555444433
No 220
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=92.44 E-value=1.8 Score=31.54 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhc-cccchhhhecccC
Q psy7008 13 TGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIG-IAAIPWMLLSEVF 90 (101)
Q Consensus 13 ~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~El~ 90 (101)
...+.+++++++.|+ +||++.+..+.++..++..++.....+..............+..+..+.+ .-+.......|.+
T Consensus 35 l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf 114 (654)
T TIGR00926 35 LCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF 114 (654)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence 345667788899985 79999998888887777766654321100001111112223333333333 3344555677888
Q ss_pred Ccc
Q psy7008 91 PLR 93 (101)
Q Consensus 91 p~~ 93 (101)
+.+
T Consensus 115 ~~~ 117 (654)
T TIGR00926 115 EER 117 (654)
T ss_pred Ccc
Confidence 754
No 221
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.22 E-value=0.45 Score=31.59 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=15.7
Q ss_pred HHHHHHHHHH-HHHHhhcCchHHHHhHh
Q psy7008 12 TTGFIGSIVS-MCIIKRIGKRPLSLISI 38 (101)
Q Consensus 12 ~~~~~~~~~~-~~l~d~~grr~~~~~~~ 38 (101)
...++.+++- .+..||.|||+..+...
T Consensus 49 ~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 49 VVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHhccccccCCcchhHHHHH
Confidence 3344444444 45678889888764443
No 222
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=91.48 E-value=1.7 Score=30.03 Aligned_cols=24 Identities=13% Similarity=-0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcC-----chHHHHhHhHHH
Q psy7008 18 SIVSMCIIKRIG-----KRPLSLISIGGT 41 (101)
Q Consensus 18 ~~~~~~l~d~~g-----rr~~~~~~~~~~ 41 (101)
..+.+.+.||++ ||+.++.+.+..
T Consensus 77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence 344788999997 677666665554
No 223
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=91.41 E-value=2.3 Score=29.49 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCC---CccHHHHHHHHHHHH-HHhhccccchh
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTV---GSQILPFIMLLLLAF-FTSIGIAAIPW 83 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~-~~~~~~~~~~~ 83 (101)
+..+.++.++++..++.+|+|..+.-..+...+..+..+...... +..+ ......+....+--. ..+... +...
T Consensus 301 ~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL-~~~q 379 (432)
T PF06963_consen 301 LGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDL-AVTQ 379 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence 345678899999999999999888877777777666555443333 2211 111111111111111 122221 2233
Q ss_pred hhecccCCccccccccc
Q psy7008 84 MLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 84 ~~~~El~p~~~R~~~~~ 100 (101)
+..|..|.+.|+.-.|
T Consensus 380 -i~Qe~V~~~~Rg~v~g 395 (432)
T PF06963_consen 380 -IMQENVPESERGAVSG 395 (432)
T ss_pred -hhcccCCHHHhhHHHH
Confidence 5789999999997654
No 224
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=90.37 E-value=2.1 Score=29.95 Aligned_cols=35 Identities=9% Similarity=-0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 17 GSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 17 ~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
..++..++.+|++|++++............+++..
T Consensus 60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 36778899999999998877666655555555554
No 225
>KOG3762|consensus
Probab=89.25 E-value=0.82 Score=32.75 Aligned_cols=45 Identities=18% Similarity=0.075 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCG 49 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~ 49 (101)
.++....++.+++.++.++++||+.+|+ +++.+........+++.
T Consensus 50 tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~ 95 (618)
T KOG3762|consen 50 TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV 95 (618)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence 3455667899999999999999997554 55555566655555544
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=87.83 E-value=1.3 Score=30.37 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcC-----chHHHHhH-hHHHHHHHHHHHHHhc---c---CCCCccHHHHHHHHHHHHHHhhcc---ccch
Q psy7008 18 SIVSMCIIKRIG-----KRPLSLIS-IGGTAFSALTCGILSY---K---GTVGSQILPFIMLLLLAFFTSIGI---AAIP 82 (101)
Q Consensus 18 ~~~~~~l~d~~g-----rr~~~~~~-~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~l~~~~~~~~~---~~~~ 82 (101)
-...|+..|+.+ ||.-+++. ...+.....+...... + +.....+.......+-...++.+. ++..
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~ 110 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF 110 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 344566779888 88655444 4444443333322221 1 222233333333332222333333 3334
Q ss_pred hhhecccCCccccccccc
Q psy7008 83 WMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~~~ 100 (101)
..+.+|..|++.|++..+
T Consensus 111 lALl~D~~~e~~R~~~v~ 128 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVA 128 (403)
T ss_pred HHHHHhcCCHhhhhhhHH
Confidence 557889999999998764
No 227
>KOG2325|consensus
Probab=87.50 E-value=1 Score=31.61 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIP 82 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (101)
++......++..+++++.++=.+|.+. |+-++.+.+.+.++..++....+.. +...+..++...+.. .+.+.-...
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-~~~~y~mL~~R~l~G--vg~~n~a~l 150 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-NGVKYLMLVARILTG--VGVGNFAVL 150 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHcC--cCcccHHHH
Confidence 344555667788888888887777773 5556677777777777764443311 113444444444332 333333444
Q ss_pred hhhecccCCcccccccc
Q psy7008 83 WMLLSEVFPLRSVFRYH 99 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~~ 99 (101)
=.|.+.-...+.|.+++
T Consensus 151 R~Y~a~~s~~~dR~rA~ 167 (488)
T KOG2325|consen 151 RAYIADASTVEDRPRAF 167 (488)
T ss_pred HHHHHhccCccchHHHH
Confidence 45667755555555543
No 228
>KOG3098|consensus
Probab=87.38 E-value=4.7 Score=28.28 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.+.+......+.+++++.+.|+++.|+.+..+..+.......+.. .+.+...+.-.+.+++.+.-|.. .-.|
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-------~N~y~~yfssallG~Gaallw~G-qG~y 126 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-------PNSYYLYFSSALLGFGAALLWTG-QGGY 126 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-------cchHHHHHHHHHhhhhHHheecc-ccee
Confidence 356667777889999999999999999999888776655444332 23444444444444444443322 2235
Q ss_pred ecccCCcccccc
Q psy7008 86 LSEVFPLRSVFR 97 (101)
Q Consensus 86 ~~El~p~~~R~~ 97 (101)
.+|..+.+.+.+
T Consensus 127 lt~~st~~tie~ 138 (461)
T KOG3098|consen 127 LTSNSTRETIER 138 (461)
T ss_pred hhhcCChhhHHH
Confidence 677777666544
No 229
>KOG2504|consensus
Probab=86.52 E-value=1.9 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcC--chHHHHhHhHHHHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIG--KRPLSLISIGGTAFSA 45 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~g--rr~~~~~~~~~~~~~~ 45 (101)
....+.++...++-++.+++.|+.. ++.....+.+..+++.
T Consensus 337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 3456778888999999999999887 4445555556555555
No 230
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=84.60 E-value=1.9 Score=29.69 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHh
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLI 36 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~ 36 (101)
...+..++..++.|.+.||.|.|+-++.
T Consensus 51 ~~~~~~l~~qp~~G~i~Dklg~kK~Ll~ 78 (412)
T PF01306_consen 51 AGSLFALLAQPVYGFISDKLGLKKHLLW 78 (412)
T ss_dssp HHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence 3456677888889999999996654433
No 231
>KOG2533|consensus
Probab=83.43 E-value=4.3 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhh----cCchHHHHhHhH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKR----IGKRPLSLISIG 39 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~----~grr~~~~~~~~ 39 (101)
+..++...+.++++.++++++.|| ..+|........
T Consensus 312 ~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 312 NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677889999999999999999 556655544443
No 232
>KOG2563|consensus
Probab=82.83 E-value=13 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
++...+..+.+.+++.+++.+.||.+.-+
T Consensus 304 G~ig~l~iv~Gmlga~~~gii~Dktk~fk 332 (480)
T KOG2563|consen 304 GYIGALMIVAGMLGALASGIIADKTKKFK 332 (480)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45566777889999999999999986433
No 233
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.40 E-value=6.7 Score=21.98 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHH
Q psy7008 14 GFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 14 ~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~ 49 (101)
+.+-....||+.||+ |-++..++.+.+.+.+.-...
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 333444557888886 666666555555554444433
No 234
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=81.01 E-value=14 Score=26.96 Aligned_cols=45 Identities=7% Similarity=-0.129 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCG 49 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~ 49 (101)
+.+...++....+.++.+.+..|++|-| .++.+...+..+...+.
T Consensus 353 ~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 353 WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 3455566777888888888888887554 44566555555444443
No 235
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=73.52 E-value=13 Score=20.47 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHH
Q psy7008 12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSA 45 (101)
Q Consensus 12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~ 45 (101)
+..++|..++-|+-++++-++.+....++.++..
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3445666666667677776665555444444443
No 236
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=72.74 E-value=19 Score=21.98 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~ 49 (101)
.+..++..++...+..|.+||........+.++....++
T Consensus 38 ~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 355567777888889999999877776666665544443
No 237
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=69.80 E-value=14 Score=22.00 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=14.3
Q ss_pred HHhhcCchHHHHhHh-HHHHHHHHHH
Q psy7008 24 IIKRIGKRPLSLISI-GGTAFSALTC 48 (101)
Q Consensus 24 l~d~~grr~~~~~~~-~~~~~~~~~~ 48 (101)
+.||+-||-.+..+. ...+++.+..
T Consensus 57 Vs~RM~rRm~~~~GiP~~lG~~~f~~ 82 (153)
T PF11947_consen 57 VSNRMLRRMAVFVGIPTALGVAVFVV 82 (153)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 568887777666654 3334444333
No 238
>KOG2532|consensus
Probab=68.88 E-value=26 Score=24.67 Aligned_cols=27 Identities=11% Similarity=-0.125 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCc
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGK 30 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~gr 30 (101)
.+.+.+-.+..++..++++.+.||..+
T Consensus 297 G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 297 GFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566678888999999999998755
No 239
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=59.84 E-value=26 Score=18.80 Aligned_cols=8 Identities=13% Similarity=-0.131 Sum_probs=3.5
Q ss_pred HHHHhhcC
Q psy7008 22 MCIIKRIG 29 (101)
Q Consensus 22 ~~l~d~~g 29 (101)
....|..+
T Consensus 74 ~~~~~~~~ 81 (141)
T TIGR00880 74 ALIADIYP 81 (141)
T ss_pred HHHHHHCC
Confidence 34445443
No 240
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=56.91 E-value=14 Score=14.87 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=10.7
Q ss_pred hcCchHHHHhHhHHHHH
Q psy7008 27 RIGKRPLSLISIGGTAF 43 (101)
Q Consensus 27 ~~grr~~~~~~~~~~~~ 43 (101)
++.||.++..+......
T Consensus 1 ~~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAA 17 (26)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 46788877776554433
No 241
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=56.60 E-value=39 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS 44 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~ 44 (101)
.+..+++.++...+..|.+|+-.......+.++.
T Consensus 40 ~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~ 73 (189)
T TIGR02185 40 GITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLL 73 (189)
T ss_pred HHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHH
Confidence 3556677777788889999998776655555443
No 242
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=56.53 E-value=61 Score=22.74 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL 46 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~ 46 (101)
.......++.+..-|..+||..|.+..-.....+-.+..
T Consensus 45 l~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 45 LVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 344556677777778899999999977666655554433
No 243
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=55.25 E-value=76 Score=22.83 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCch---H----HHHhHhHHHHHHHHHHHHHhc-c-C-CCCccHHHHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKR---P----LSLISIGGTAFSALTCGILSY-K-G-TVGSQILPFIMLLLLAFF 73 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr---~----~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~l~~~~ 73 (101)
.+.+.+..+.-++.+++..++..|.+|| + =+.++...++.+..++..... . . ++..+...++........
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 3456666777777787887777775443 1 233445555555555444322 1 1 233333443444444444
Q ss_pred HhhccccchhhhecccCCccccccc
Q psy7008 74 TSIGIAAIPWMLLSEVFPLRSVFRY 98 (101)
Q Consensus 74 ~~~~~~~~~~~~~~El~p~~~R~~~ 98 (101)
......+.--.+.+.+.|++..+..
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ 431 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFI 431 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHH
Confidence 4555566666667777787665543
No 244
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=51.14 E-value=57 Score=20.11 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGK 30 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~gr 30 (101)
.+-...++.+++.+++.||..+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc
Confidence 3445667889999999999885
No 245
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=50.66 E-value=49 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG 49 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~ 49 (101)
...+.+.......+.++.|++.|..|....-........+.+...+
T Consensus 336 gmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777778888877777666555555555544444
No 246
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=48.83 E-value=34 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhcCc--hHHHHhHhHHHHHHHH
Q psy7008 13 TGFIGSIVSMCIIKRIGK--RPLSLISIGGTAFSAL 46 (101)
Q Consensus 13 ~~~~~~~~~~~l~d~~gr--r~~~~~~~~~~~~~~~ 46 (101)
...++.++++++.||+++ |+....+.....++..
T Consensus 379 ~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 379 AAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 346788888999999883 4555555555554433
No 247
>COG4708 Predicted membrane protein [Function unknown]
Probab=46.71 E-value=28 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchH
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
.++..++...+++..+|+.++|.
T Consensus 143 ta~gEfvsl~vg~~~m~kl~kr~ 165 (169)
T COG4708 143 TALGEFVSLYVGALIMDKLGKRI 165 (169)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhh
Confidence 35677888888889999999885
No 248
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=46.42 E-value=64 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcC-----chHHHHhHhHHHHHHHHHHHHH
Q psy7008 16 IGSIVSMCIIKRIG-----KRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 16 ~~~~~~~~l~d~~g-----rr~~~~~~~~~~~~~~~~~~~~ 51 (101)
..-++.|.+.|-+. ||+-++++..+...+...+...
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~ 79 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL 79 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 44567788899763 5555566666665555554443
No 249
>KOG3764|consensus
Probab=43.73 E-value=41 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcC--chHHHHhHhHHHHHHHHHH
Q psy7008 11 PTTGFIGSIVSMCIIKRIG--KRPLSLISIGGTAFSALTC 48 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~g--rr~~~~~~~~~~~~~~~~~ 48 (101)
.+...+++.+.+.+.||++ |......+.+..+.+..+.
T Consensus 316 ~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i 355 (464)
T KOG3764|consen 316 SLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI 355 (464)
T ss_pred ccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh
Confidence 4567889999999999999 6555555555555444433
No 250
>KOG3098|consensus
Probab=41.80 E-value=1.1e+02 Score=21.84 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcCchHHHHhHhHHHHHHHHHHHHHhc-c----C-C-----CC-ccHHHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIK---RIGKRPLSLISIGGTAFSALTCGILSY-K----G-T-----VG-SQILPFIMLLLLA 71 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d---~~grr~~~~~~~~~~~~~~~~~~~~~~-~----~-~-----~~-~~~~~~~~~~l~~ 71 (101)
....++.+..+..+...+.| ++||++....+.........+...... + + + .. ......+...+++
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 34445666666666666665 468888888877766666555433221 1 1 1 11 1224444444444
Q ss_pred HHHhhccccchhhhecccCCccc
Q psy7008 72 FFTSIGIAAIPWMLLSEVFPLRS 94 (101)
Q Consensus 72 ~~~~~~~~~~~~~~~~El~p~~~ 94 (101)
..-+. ++...+...+++.|.+.
T Consensus 365 ~~D~~-~~t~~~~ii~~~~~~~~ 386 (461)
T KOG3098|consen 365 FGDAC-FNTQRYVIIALLYPDDR 386 (461)
T ss_pred hHHHH-HHHHHHHHHHHHhcCch
Confidence 44433 34555556777775443
No 251
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=40.81 E-value=1.3e+02 Score=21.49 Aligned_cols=37 Identities=14% Similarity=-0.001 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
++...+..++.|+++|++++............+++..
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v 109 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV 109 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788899999998876665555555555554
No 252
>COG3817 Predicted membrane protein [Function unknown]
Probab=39.05 E-value=1.1e+02 Score=20.13 Aligned_cols=90 Identities=24% Similarity=0.341 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c--------------CCCCccHHHHHHHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K--------------GTVGSQILPFIMLLLLAF 72 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~l~~~ 72 (101)
....+..+++++....+. +++.|+-.+.+..+.++.......... + +.+|.....-....+...
T Consensus 102 l~ip~~tlig~~lf~~~s-~~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl~d~v~wa~iLPQ~LaaLG~v 180 (313)
T COG3817 102 LLIPVLTLIGSLLFPDLS-FFDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEARRLMDQVSWAAILPQMLAALGAV 180 (313)
T ss_pred HHHHHHHHHHHHHhcccc-ccCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566665555444 477777644444333333333333222 1 011112222223333444
Q ss_pred HHhhccccchhhhecccCCccccccc
Q psy7008 73 FTSIGIAAIPWMLLSEVFPLRSVFRY 98 (101)
Q Consensus 73 ~~~~~~~~~~~~~~~El~p~~~R~~~ 98 (101)
+...|.|....-+.+|..|.+.|-.+
T Consensus 181 Fa~aGvG~~ia~L~~~~i~~Dsrfia 206 (313)
T COG3817 181 FASAGVGDVIAHLISEIIPADSRFIA 206 (313)
T ss_pred HHhcchhHHHHHHHHHHcccchhHHH
Confidence 45556666655568899999888654
No 253
>PF14068 YuiB: Putative membrane protein
Probab=38.45 E-value=49 Score=18.31 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGK 30 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~gr 30 (101)
....+++|+..+|+..+...+
T Consensus 76 il~~Gl~GAi~SG~tIr~LRk 96 (102)
T PF14068_consen 76 ILSSGLAGAIVSGITIRTLRK 96 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777765543
No 254
>KOG2816|consensus
Probab=37.78 E-value=1.5e+02 Score=21.07 Aligned_cols=84 Identities=8% Similarity=0.032 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHH-HHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 9 FVPTTGFIGSIVSM-CIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 9 ~~~~~~~~~~~~~~-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.....+.++..+.. .+..++|-|+....|.....+....++.... .+..+...+.. .++....+..-...+
T Consensus 285 ~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~-----~~~~~~~pa~~s~~s 356 (463)
T KOG2816|consen 285 LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVV-----ALAGIVFPAIRAFAS 356 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHH-----HhhcchhHHHHhHHH
Confidence 34455566666666 5677788888888888777777776665321 22222221211 122223344455567
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
-+..++.|++.++
T Consensus 357 ~~v~~~e~g~v~~ 369 (463)
T KOG2816|consen 357 ILVSPEEQGKVFG 369 (463)
T ss_pred hhcccccccchhh
Confidence 7778888877654
No 255
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=37.65 E-value=81 Score=18.11 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchH
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
...+.++.....++....+.+|+||+.
T Consensus 93 ~Allagi~av~~~~~~ip~lsr~g~~~ 119 (125)
T PF03817_consen 93 VALLAGIGAVAVCFLLIPLLSRIGRKT 119 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445555666666666666777777653
No 256
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=37.58 E-value=50 Score=15.59 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008 15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFS 44 (101)
Q Consensus 15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~ 44 (101)
.++..++.++.++++.++.........++.
T Consensus 15 ~~g~~~G~~lD~~~~t~p~~~~~g~llG~~ 44 (55)
T PF09527_consen 15 LVGFFLGYWLDKWFGTSPWFTLIGLLLGIA 44 (55)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 344444555556778766555444443333
No 257
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=37.12 E-value=45 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.132 Sum_probs=21.9
Q ss_pred HHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 22 MCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 22 ~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
.++..|+.||+.++.|.+++.+..+.+...
T Consensus 75 pF~~~r~~kRk~~~~G~~~f~~ll~~lS~f 104 (382)
T TIGR02876 75 PFLFKRLRKRPGILIGILLFLAIVYFLSNF 104 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 356778899998988887776666655443
No 258
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=37.06 E-value=44 Score=22.90 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=21.5
Q ss_pred HHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 22 MCIIKRIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 22 ~~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
.++..|+.||+.++.|.++..+....+...
T Consensus 78 pF~~~r~~~R~~~~~G~~~f~~~l~~lS~f 107 (385)
T PF06898_consen 78 PFFLKRLRRRKGFVAGIVLFLALLYILSSF 107 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCe
Confidence 456778889999988887776666555443
No 259
>COG2119 Predicted membrane protein [Function unknown]
Probab=36.65 E-value=1.1e+02 Score=19.09 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS 44 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~ 44 (101)
.....++.++...+.++.+|+.-|.+-..+..+..+.
T Consensus 141 lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~f 177 (190)
T COG2119 141 LGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIF 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 3344667788888888999999888766665544333
No 260
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=35.47 E-value=1.6e+02 Score=20.70 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIK-RIGKRPLSLISIGGTAFSALTCGIL 51 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d-~~grr~~~~~~~~~~~~~~~~~~~~ 51 (101)
+.......+++-...+++.. |.++++.-..+......+...+...
T Consensus 250 ta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 250 TAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777665 6777777777777776666555443
No 261
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=35.32 E-value=46 Score=20.95 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=13.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPL 33 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~ 33 (101)
|.+.+...++++.-++.-.+++.+.||++
T Consensus 153 wgT~~lmgvNvllFl~~~~~~EPwkRrRL 181 (207)
T PF05546_consen 153 WGTWGLMGVNVLLFLVAQLLVEPWKRRRL 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34444444444444444445555555443
No 262
>PTZ00207 hypothetical protein; Provisional
Probab=32.72 E-value=2e+02 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=9.9
Q ss_pred HHhhccccchhhhecccCC
Q psy7008 73 FTSIGIAAIPWMLLSEVFP 91 (101)
Q Consensus 73 ~~~~~~~~~~~~~~~El~p 91 (101)
.++..++. .....+|+|-
T Consensus 465 ~~G~~~~~-~~~i~selFg 482 (591)
T PTZ00207 465 ANGFMAAT-IALVTRTIFA 482 (591)
T ss_pred HhhHhHHH-HHHHHHHHhc
Confidence 33443433 3345789987
No 263
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=31.68 E-value=1.1e+02 Score=17.61 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr 31 (101)
...+.++.....+.....+.+|++|+
T Consensus 93 ~Allagi~av~~~~~~i~~l~r~g~~ 118 (125)
T TIGR00807 93 LALLASVAALIVTVLVIRWISKSSYG 118 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44455555555565666666666654
No 264
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=31.49 E-value=2.1e+02 Score=20.87 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIG--GTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIG 77 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (101)
..+.+.+.++..+++-.++.|...+..+.. +.+...+++.. ..+-|.+-+...+|...+..-
T Consensus 307 ~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~------t~~Iw~~Y~~yvlf~~~y~fl 370 (511)
T TIGR00806 307 STLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ------SHDIWVLYVTYVLFRGIYQFL 370 (511)
T ss_pred HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc------ccchHHHHHHHHHHHHHHHHH
Confidence 344455566666666444433333333322 22222222221 345666666677776666553
No 265
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=31.19 E-value=1.9e+02 Score=20.29 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHH
Q psy7008 4 SSPQIFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTC 48 (101)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~ 48 (101)
+....+....+++.++...++.+|. ++|+.......++.+....+
T Consensus 246 G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999865 56776666655555554443
No 266
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=30.72 E-value=96 Score=16.81 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGK 30 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~gr 30 (101)
..+...+++.+..++.++.++
T Consensus 23 ~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 23 ATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 345556677666666666663
No 267
>KOG2615|consensus
Probab=30.34 E-value=1.9e+02 Score=20.53 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=20.2
Q ss_pred HHHHHHHHhhccccchhhhecccCCccccccccc
Q psy7008 67 LLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
..++.+..+... +....+.....|+..|++.+|
T Consensus 359 s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~G 391 (451)
T KOG2615|consen 359 STLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNG 391 (451)
T ss_pred HHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHH
Confidence 334444433333 344556788889999988765
No 268
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=29.81 E-value=1.2e+02 Score=17.79 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhcCch
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr 31 (101)
-....+.+.+.+++.||.+|+
T Consensus 63 l~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 63 LLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 345567788888888888765
No 269
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=29.31 E-value=1.7e+02 Score=19.27 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=4.7
Q ss_pred cCchHHHH
Q psy7008 28 IGKRPLSL 35 (101)
Q Consensus 28 ~grr~~~~ 35 (101)
+.||+...
T Consensus 169 ~kRk~fi~ 176 (267)
T PF07672_consen 169 YKRKPFIH 176 (267)
T ss_pred hhhhhHHH
Confidence 45776554
No 270
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=28.85 E-value=1.1e+02 Score=16.67 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHH
Q psy7008 9 FVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALT 47 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~ 47 (101)
+..+.+.+.-+.++...|+ +|.|..+.+..+........
T Consensus 22 ~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~ 61 (99)
T PF08551_consen 22 IGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLL 61 (99)
T ss_pred HHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHH
Confidence 3345556666667777775 68888777665555544443
No 271
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=27.83 E-value=2.2e+02 Score=20.13 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV 89 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El 89 (101)
.-....+|=+++.++++|+...+.+.....+....+....... +...+....+...+.+.. -|..+....+.
T Consensus 281 ~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-------g~v~~~~l~~ig~F~sim-fPTIfslal~~ 352 (422)
T COG0738 281 FWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-------GVVALYALFLIGLFNSIM-FPTIFSLALKN 352 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHhHHH-HHHHHHHHHhc
Confidence 3345567777777888999888887776665555555444321 122222222222333332 35555556666
Q ss_pred CC
Q psy7008 90 FP 91 (101)
Q Consensus 90 ~p 91 (101)
.|
T Consensus 353 l~ 354 (422)
T COG0738 353 LG 354 (422)
T ss_pred cC
Confidence 66
No 272
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=27.12 E-value=2.3e+02 Score=19.92 Aligned_cols=24 Identities=13% Similarity=0.085 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchH
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
...+.+++..+....+..|+..|.
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~ 76 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTV 76 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccc
Confidence 344555555555566666776533
No 273
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=26.91 E-value=1.6e+02 Score=18.17 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhcCc
Q psy7008 14 GFIGSIVSMCIIKRIGK 30 (101)
Q Consensus 14 ~~~~~~~~~~l~d~~gr 30 (101)
.+++..++.++.+|+++
T Consensus 206 ~~~G~~lG~~~~~~i~~ 222 (240)
T PF01925_consen 206 AFLGAFLGAKLARKIPQ 222 (240)
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 34444444444444443
No 274
>COG4769 Predicted membrane protein [Function unknown]
Probab=26.64 E-value=1.4e+02 Score=18.25 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISI 38 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~ 38 (101)
.+.+.+..+-+.+....++..++|.|...+.+.
T Consensus 78 ~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgi 110 (181)
T COG4769 78 PVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGI 110 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEeeeeh
Confidence 345555666666667778888899776544433
No 275
>KOG3500|consensus
Probab=24.56 E-value=1.2e+02 Score=16.06 Aligned_cols=45 Identities=13% Similarity=-0.075 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHh
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILS 52 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 52 (101)
++..+.-.+.++.+.++..|-..|.++-.....++.++.++....
T Consensus 8 l~ftvfw~~v~~~~pi~~~kgP~~~li~~~lvlTAVCCwlfWli~ 52 (84)
T KOG3500|consen 8 LVFTVFWGIVGICGPICFPKGPNRGLIRCMLVLTAVCCWLFWLIV 52 (84)
T ss_pred hHHHHHHHHHHHhcceeccCCCCcChhHHHHHHHHHHHHHHHHHH
Confidence 344444455555666777888888877777777777766655443
No 276
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=24.42 E-value=86 Score=14.17 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=8.8
Q ss_pred HhhcCchHHHHhHhHHH
Q psy7008 25 IKRIGKRPLSLISIGGT 41 (101)
Q Consensus 25 ~d~~grr~~~~~~~~~~ 41 (101)
.|--||-++.+++...-
T Consensus 2 ~~ttGRIPLWlVgtv~G 18 (40)
T PF01788_consen 2 ANTTGRIPLWLVGTVAG 18 (40)
T ss_dssp ---TTSS-HHHHHHHHH
T ss_pred CCCCCcccchHHHHHHH
Confidence 34567888877765544
No 277
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=23.79 E-value=1.3e+02 Score=20.88 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAF 43 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~ 43 (101)
....++++++..++|.+.|+.+.+..+.+......+
T Consensus 131 ~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 131 GVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL 166 (433)
T ss_pred HHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence 445577888899999999999888876655444333
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=23.12 E-value=1.3e+02 Score=22.02 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=19.0
Q ss_pred HHHHHHhhcCchHHHHhH-hHHHHHHHHHHHHH
Q psy7008 20 VSMCIIKRIGKRPLSLIS-IGGTAFSALTCGIL 51 (101)
Q Consensus 20 ~~~~l~d~~grr~~~~~~-~~~~~~~~~~~~~~ 51 (101)
+=....+|+|||+..++= ..+.++.++.++..
T Consensus 59 VDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~ 91 (544)
T PF13000_consen 59 VDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYN 91 (544)
T ss_pred hhhhcccccCCcchhhhHHHHHHHHHHHHHHhc
Confidence 334455789999877553 35555555554443
No 279
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=22.45 E-value=1.7e+02 Score=18.22 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHhH
Q psy7008 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLIS 37 (101)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~ 37 (101)
....+..++|..+..++..+.||+...-..
T Consensus 61 ~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~ 90 (208)
T COG0586 61 LVATLGALLGDLISYWIGRRFGRKLLRKLW 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHhhh
Confidence 344566778888888888777765544333
No 280
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.27 E-value=1.8e+02 Score=17.02 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCch
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKR 31 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr 31 (101)
....++++..++-|+++-|++.+
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 34455555556666666566544
No 281
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.24 E-value=1.9e+02 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhc
Q psy7008 16 IGSIVSMCIIKRI 28 (101)
Q Consensus 16 ~~~~~~~~l~d~~ 28 (101)
.+.++.+.+.|++
T Consensus 104 ~gQli~glliD~f 116 (150)
T COG3238 104 AGQLIMGLLIDHF 116 (150)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 282
>PRK11677 hypothetical protein; Provisional
Probab=21.91 E-value=1.8e+02 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhcC
Q psy7008 13 TGFIGSIVSMCIIKRIG 29 (101)
Q Consensus 13 ~~~~~~~~~~~l~d~~g 29 (101)
+.++-.++.|+++-|+.
T Consensus 8 i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34444444444444443
No 283
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=21.88 E-value=16 Score=21.46 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=2.8
Q ss_pred hhcCchH
Q psy7008 26 KRIGKRP 32 (101)
Q Consensus 26 d~~grr~ 32 (101)
|++|||+
T Consensus 3 dk~gRr~ 9 (148)
T PF08144_consen 3 DKYGRRV 9 (148)
T ss_pred CccCcee
Confidence 3444443
No 284
>KOG4332|consensus
Probab=21.36 E-value=2.8e+02 Score=18.98 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhcCch--HHHHhHhHHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008 11 PTTGFIGSIVSMCIIKRIGKR--PLSLISIGGTAFSALTCGILS-YKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS 87 (101)
Q Consensus 11 ~~~~~~~~~~~~~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (101)
.+..++|+-+..++..|-..| +...+..........+..... ..+.+...-.....++++....+..+.++.. +-+
T Consensus 292 MlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimk-mRs 370 (454)
T KOG4332|consen 292 MLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMK-MRS 370 (454)
T ss_pred HHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHH-HHH
Confidence 355566666666666544333 233333333333322222222 1111122222344455566555565644443 467
Q ss_pred ccCCccccccccc
Q psy7008 88 EVFPLRSVFRYHD 100 (101)
Q Consensus 88 El~p~~~R~~~~~ 100 (101)
+..|.+.|++...
T Consensus 371 qyIPEearstimN 383 (454)
T KOG4332|consen 371 QYIPEEARSTIMN 383 (454)
T ss_pred hhCCHHHHhhhhh
Confidence 8888888887654
No 285
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=21.31 E-value=3e+02 Score=19.37 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHhHh--HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhh
Q psy7008 10 VPTTGFIGSIVSMCIIKRIGKRPLSLISI--GGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSI 76 (101)
Q Consensus 10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (101)
..+.+.++++..+++-.++++..-+..+. ...+...+++.. ..+-|.+-+...++...+..
T Consensus 294 ~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~------t~~Iwv~Y~~yIif~~~y~f 356 (412)
T PF01770_consen 294 STLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF------TGNIWVCYAGYIIFRSLYMF 356 (412)
T ss_pred HHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHH
Confidence 34444555566666644555544333332 233333333322 33455555556666655544
No 286
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=21.08 E-value=96 Score=13.47 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q psy7008 14 GFIGSIVSMCIIK 26 (101)
Q Consensus 14 ~~~~~~~~~~l~d 26 (101)
+++.+++.+|+-+
T Consensus 21 gIi~s~iv~w~~~ 33 (35)
T PF13940_consen 21 GIIASLIVGWLRN 33 (35)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 287
>TIGR02979 phageshock_pspD phage shock protein PspD. Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=20.91 E-value=61 Score=15.98 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCchHHH
Q psy7008 18 SIVSMCIIKRIGKRPLS 34 (101)
Q Consensus 18 ~~~~~~l~d~~grr~~~ 34 (101)
+=+.||.+....||++=
T Consensus 21 AG~aGw~vKsVsrkPLr 37 (59)
T TIGR02979 21 AGVAGWAMKSVARRPLK 37 (59)
T ss_pred hhHHHHHHHHHhhccHH
Confidence 34678999999999854
No 288
>PRK10847 hypothetical protein; Provisional
Probab=20.39 E-value=1.9e+02 Score=18.11 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchH
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRP 32 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~ 32 (101)
...+...+|+.+..++..+.|||.
T Consensus 77 ~a~~Ga~lG~~i~Y~lGr~~G~~~ 100 (219)
T PRK10847 77 LMLIAAIVGDAVNYTIGRLFGEKL 100 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHH
Confidence 334666777777777777777654
Done!