Query psy7008
Match_columns 101
No_of_seqs 107 out of 1847
Neff 10.3
Searched_HMMs 29240
Date Sat Aug 17 00:28:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.4 6.3E-13 2.1E-17 88.0 7.9 93 6-100 317-409 (491)
2 4gc0_A D-xylose-proton symport 99.0 8.7E-10 3E-14 73.0 5.4 92 7-99 61-164 (491)
3 3o7q_A L-fucose-proton symport 98.8 1.6E-08 5.4E-13 65.9 5.8 92 5-100 65-156 (438)
4 1pw4_A Glycerol-3-phosphate tr 98.7 3.2E-08 1.1E-12 64.6 6.9 93 5-100 66-158 (451)
5 4aps_A DI-OR tripeptide H+ sym 98.6 1.1E-07 3.9E-12 62.9 6.1 85 5-96 58-143 (491)
6 2gfp_A EMRD, multidrug resista 98.6 2.5E-08 8.4E-13 64.0 2.7 89 5-100 39-127 (375)
7 2xut_A Proton/peptide symporte 98.5 4.7E-07 1.6E-11 60.5 7.5 87 6-98 59-146 (524)
8 2cfq_A Lactose permease; trans 98.4 2.3E-07 7.7E-12 60.8 4.4 85 9-100 267-351 (417)
9 4aps_A DI-OR tripeptide H+ sym 98.3 1.8E-06 6E-11 57.2 6.8 95 5-100 323-425 (491)
10 1pw4_A Glycerol-3-phosphate tr 98.2 4E-06 1.4E-10 54.7 5.6 90 6-100 293-385 (451)
11 3o7q_A L-fucose-proton symport 98.1 7.9E-06 2.7E-10 53.2 6.6 85 6-99 300-384 (438)
12 2cfq_A Lactose permease; trans 96.8 0.0011 3.8E-08 43.2 3.8 38 5-42 47-84 (417)
13 2gfp_A EMRD, multidrug resista 96.4 0.00035 1.2E-08 44.6 -0.7 84 9-100 243-329 (375)
14 2xut_A Proton/peptide symporte 94.0 0.018 6E-07 38.4 1.3 22 79-100 423-444 (524)
15 2g9p_A Antimicrobial peptide l 77.7 2.1 7.3E-05 16.2 1.9 14 21-34 3-16 (26)
16 1cmk_I CAMP-dependent protein 29.3 9 0.00031 15.0 -0.3 10 25-34 9-18 (26)
17 3arc_J Photosystem II reaction 28.6 43 0.0015 14.5 2.9 17 25-41 2-18 (40)
18 2jpj_A Bacteriocin lactococcin 23.3 19 0.00064 15.2 0.1 8 25-32 30-37 (39)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.42 E-value=6.3e-13 Score=88.03 Aligned_cols=93 Identities=22% Similarity=0.408 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
.+.+.++..+++.++++++.||+|||+.++.+.....++.+.+..... .....+..+....++...++.++++++|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--TQAPGIVALLSMLFYVAAFAMSWGPVCWVL 394 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 355667888999999999999999999999988888887776655442 123344555666677777888888999999
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
.+|++|++.|+++.+
T Consensus 395 ~~E~fPt~~R~~~~g 409 (491)
T 4gc0_A 395 LSEIFPNAIRGKALA 409 (491)
T ss_dssp HHHSSCTTTHHHHHH
T ss_pred HHHhCCHhHHHHHHH
Confidence 999999999999875
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.96 E-value=8.7e-10 Score=72.97 Aligned_cols=92 Identities=12% Similarity=-0.026 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c------C----CCCccH-HHHHHHHHHHHHH
Q psy7008 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K------G----TVGSQI-LPFIMLLLLAFFT 74 (101)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~------~----~~~~~~-~~~~~~~l~~~~~ 74 (101)
+....+...+|+++.+++.||+|||+.+..+..+..++....+.... . . ....+. ..++...+....
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g- 139 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIG- 139 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHH-
Confidence 34456778899999999999999999999999888888777653211 0 0 001222 233333333322
Q ss_pred hhccccchhhhecccCCcccccccc
Q psy7008 75 SIGIAAIPWMLLSEVFPLRSVFRYH 99 (101)
Q Consensus 75 ~~~~~~~~~~~~~El~p~~~R~~~~ 99 (101)
..+..+....+.+|..|++.|++..
T Consensus 140 ~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 140 VGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 2233456677899999999998754
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.75 E-value=1.6e-08 Score=65.94 Aligned_cols=92 Identities=13% Similarity=-0.045 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++......... ....+...+...+.....+. ..+....
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~-~~~~~~~ 140 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYTLFLVGLFIIAAGLGC-LETAANP 140 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHhhHHH-hhhhHHH
Confidence 3455667778889999999999999999999999988888877632221 22333333444444433333 3355567
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 141 ~~~~~~~~~~r~~~~~ 156 (438)
T 3o7q_A 141 FVTVLGPESSGHFRLN 156 (438)
T ss_dssp HHHHSSCSTTHHHHHH
T ss_pred HHHHHcCchhHHHHHH
Confidence 7899999999987654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.74 E-value=3.2e-08 Score=64.61 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=63.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+...+..+...++.++.+++.||+|||+.+..+.....++.......... ....+...+...+.....+. ..+....
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~-~~~~~~~ 142 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGM-GWPPCGR 142 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHH-THHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhh-ccchHHH
Confidence 44566678888999999999999999999999998888888777651100 01222333334444333333 3355567
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 143 ~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 143 TMVHWWSQKERGGIVS 158 (451)
T ss_dssp HHHTTCTTTHHHHHHH
T ss_pred HHHHHCCchhhhHHHH
Confidence 7899999999988764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.58 E-value=1.1e-07 Score=62.90 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW 83 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (101)
+......+...++.++.+++.|| +|||+.+..+.....++...... ....+...+...+.....+. ..+...
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~-~~~~~~ 130 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------PFGASALFGSIILIIIGTGF-LKPNVS 130 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS------CCSTTHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHh-ccchHH
Confidence 34556678888999999999999 89999999998888887776543 22233333333433333332 335566
Q ss_pred hhecccCCccccc
Q psy7008 84 MLLSEVFPLRSVF 96 (101)
Q Consensus 84 ~~~~El~p~~~R~ 96 (101)
.+.+|.+|++.|.
T Consensus 131 ~~~~~~~~~~~~~ 143 (491)
T 4aps_A 131 TLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHSSSCTTH
T ss_pred HHHHHHcCccccc
Confidence 7789999998844
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.57 E-value=2.5e-08 Score=64.03 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
+......+...++.++.+++.||+|||+.+..+.....++........ ..+.......+.....+ ...+....
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~g~~~~-~~~~~~~~ 111 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------SLTVLIAASAMQGMGTG-VGGVMART 111 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHH-hhhhhHHH
Confidence 345566778889999999999999999999998888888777665432 22233333333333322 23455666
Q ss_pred hecccCCccccccccc
Q psy7008 85 LLSEVFPLRSVFRYHD 100 (101)
Q Consensus 85 ~~~El~p~~~R~~~~~ 100 (101)
+.+|.+|++.|++..+
T Consensus 112 ~~~~~~~~~~~~~~~~ 127 (375)
T 2gfp_A 112 LPRDLYERTQLRHANS 127 (375)
T ss_dssp HHHHHHHTSSCCSHHH
T ss_pred HHHHHCCHHHHHHHHH
Confidence 7899999999988754
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.50 E-value=4.7e-07 Score=60.48 Aligned_cols=87 Identities=15% Similarity=0.004 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM 84 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (101)
......+...++.++.+++.||+ |||+.+..+.....++....... ....+...+...+.....+ ...+....
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~-~~~~~~~~ 132 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSG-GIKPLVSS 132 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhcc-ccchhHHH
Confidence 44556677888999999999999 99999998888887777665542 1122333333333333332 33455667
Q ss_pred hecccCCccccccc
Q psy7008 85 LLSEVFPLRSVFRY 98 (101)
Q Consensus 85 ~~~El~p~~~R~~~ 98 (101)
+.+|.+|++.|++.
T Consensus 133 ~~~~~~~~~~r~~~ 146 (524)
T 2xut_A 133 FMGDQFDQSNKSLA 146 (524)
T ss_dssp HHHHTCSTTTTTHH
T ss_pred HHHHHcCccchHHH
Confidence 78999999999753
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.43 E-value=2.3e-07 Score=60.78 Aligned_cols=85 Identities=14% Similarity=0.032 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE 88 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E 88 (101)
+..+...++.++.+++.||+|||+.+..+.....+....... ....+.......+...... ...+..+.+.+|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 339 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------ATSALEVVILKTLHMFEVP-FLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334566778899999999999999888777666655443321 1122222222222222221 122334668899
Q ss_pred cCCccccccccc
Q psy7008 89 VFPLRSVFRYHD 100 (101)
Q Consensus 89 l~p~~~R~~~~~ 100 (101)
.+|++.|+++.+
T Consensus 340 ~~p~~~~g~~~g 351 (417)
T 2cfq_A 340 QFEVRFSATIYL 351 (417)
T ss_dssp HSCHHHHHHHHH
T ss_pred HCCHHHHHHHHH
Confidence 999999998654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.32 E-value=1.8e-06 Score=57.19 Aligned_cols=95 Identities=12% Similarity=-0.078 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHH-----hHhHHHHHHHHHHHHHhc-c--CCCCccHHHHHHHHHHHHHHhh
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSL-----ISIGGTAFSALTCGILSY-K--GTVGSQILPFIMLLLLAFFTSI 76 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~ 76 (101)
.......+...++..+.+++.||++||+... .+.....++...+..... . ......+.......+......
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~- 401 (491)
T 4aps_A 323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM- 401 (491)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-
Confidence 3455667778888999999999999986544 555555555444433221 1 111122333333333333332
Q ss_pred ccccchhhhecccCCccccccccc
Q psy7008 77 GIAAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 77 ~~~~~~~~~~~El~p~~~R~~~~~ 100 (101)
...+..+.+..|.+|++.|+++.+
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHH
Confidence 334666778999999999998875
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.15 E-value=4e-06 Score=54.67 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CchHHHHhHhHHHH-HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRI--GKRPLSLISIGGTA-FSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIP 82 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (101)
......+..+++.++.+++.||+ |||+.+..+..... ++...+.. . .....+.......+..... ....+..
T Consensus 293 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~-~~~~~~~ 367 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-N---PAGNPTVDMICMIVIGFLI-YGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-C---CTTCHHHHHHHHHHHHHHH-THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-h---cccCHHHHHHHHHHHHHHH-hchHHHH
Confidence 44556678889999999999999 99998877665554 33332211 0 0112222323232222222 2223445
Q ss_pred hhhecccCCccccccccc
Q psy7008 83 WMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 83 ~~~~~El~p~~~R~~~~~ 100 (101)
+.+..|.+|++.|+++.+
T Consensus 368 ~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHH
Confidence 567899999999998765
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.13 E-value=7.9e-06 Score=53.17 Aligned_cols=85 Identities=15% Similarity=-0.003 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...+..+...++.++.+++.||+|||+.+..+.....++....... ...+. .....+.....+ ...+..+.+
T Consensus 300 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~g~~~~-~~~~~~~~~ 371 (438)
T 3o7q_A 300 YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------GGHVG-LIALTLCSAFMS-IQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------CHHHH-HHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------CCcHH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 3455667888999999999999999999988887777666554431 12222 222233333332 234566777
Q ss_pred ecccCCcccccccc
Q psy7008 86 LSEVFPLRSVFRYH 99 (101)
Q Consensus 86 ~~El~p~~~R~~~~ 99 (101)
..|.+|++ |+++.
T Consensus 372 ~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 372 GIKNLGQD-TKYGS 384 (438)
T ss_dssp HHSSCGGG-HHHHH
T ss_pred HHhhcccc-ccchh
Confidence 78999977 66554
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.84 E-value=0.0011 Score=43.25 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHH
Q psy7008 5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTA 42 (101)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~ 42 (101)
+......+...++.++.|++.||+|||+.+..+.....
T Consensus 47 ~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455677888999999999999999998887665443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.42 E-value=0.00035 Score=44.62 Aligned_cols=84 Identities=14% Similarity=-0.012 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHH-HHHHHH--HHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGG-TAFSAL--TCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML 85 (101)
Q Consensus 9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (101)
...+..+++.++.+++.||.+||. ..+... ...+.. ...... ....+.......+.....+. ..+....+
T Consensus 243 ~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~ 315 (375)
T 2gfp_A 243 LPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG----VMNVWTLLVPAALFFFGAGM-LFPLATSG 315 (375)
T ss_dssp THHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH----HHHHHHHHHHHHHHHHHHHH-TSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc----cccHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 344556677777777777776632 222221 111111 111100 01222233333344434333 34666677
Q ss_pred ecccCCccccccccc
Q psy7008 86 LSEVFPLRSVFRYHD 100 (101)
Q Consensus 86 ~~El~p~~~R~~~~~ 100 (101)
..|.+| +.|+++.+
T Consensus 316 ~~~~~p-~~~g~~~g 329 (375)
T 2gfp_A 316 AMEPFP-FLAGTAGA 329 (375)
T ss_dssp HHTHHH-HHHHHHHH
T ss_pred HHHhCC-cccchHHH
Confidence 889998 88887764
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.04 E-value=0.018 Score=38.39 Aligned_cols=22 Identities=9% Similarity=-0.167 Sum_probs=18.2
Q ss_pred ccchhhhecccCCccccccccc
Q psy7008 79 AAIPWMLLSEVFPLRSVFRYHD 100 (101)
Q Consensus 79 ~~~~~~~~~El~p~~~R~~~~~ 100 (101)
.+..+.+.+|..|++.|++++|
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g 444 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMS 444 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHH
T ss_pred HHHHHHHHHHhCcHHHHhHHHH
Confidence 4566778899999999999875
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=77.68 E-value=2.1 Score=16.24 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.8
Q ss_pred HHHHHhhcCchHHH
Q psy7008 21 SMCIIKRIGKRPLS 34 (101)
Q Consensus 21 ~~~l~d~~grr~~~ 34 (101)
.+.++.|+|||...
T Consensus 3 fgklikkfgrkais 16 (26)
T 2g9p_A 3 FGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHTSHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 56788999998643
No 16
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=29.31 E-value=9 Score=15.02 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=7.2
Q ss_pred HhhcCchHHH
Q psy7008 25 IKRIGKRPLS 34 (101)
Q Consensus 25 ~d~~grr~~~ 34 (101)
.||-|||+.+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 4788998743
No 17
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=28.64 E-value=43 Score=14.45 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=10.6
Q ss_pred HhhcCchHHHHhHhHHH
Q psy7008 25 IKRIGKRPLSLISIGGT 41 (101)
Q Consensus 25 ~d~~grr~~~~~~~~~~ 41 (101)
+|.-||-++.+++...-
T Consensus 2 m~~tGRiPLWlvgtv~G 18 (40)
T 3arc_J 2 MSEGGRIPLWIVATVAG 18 (40)
T ss_dssp -CCTTSSCHHHHHHHHH
T ss_pred CCCcCcccEEeeeeehh
Confidence 45568888877765543
No 18
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=23.30 E-value=19 Score=15.19 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=4.9
Q ss_pred HhhcCchH
Q psy7008 25 IKRIGKRP 32 (101)
Q Consensus 25 ~d~~grr~ 32 (101)
+||++||+
T Consensus 30 a~rinrkk 37 (39)
T 2jpj_A 30 ASRINRKK 37 (39)
T ss_dssp HHHHHGGG
T ss_pred HHHhhhhc
Confidence 36677664
Done!