RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7008
(101 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 50.0 bits (120), Expect = 1e-08
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 13 TGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVG----SQILPFIMLL 68
F + V++ ++ R G+RPL LI G A GIL G S + + +L
Sbjct: 331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFIL 390
Query: 69 LLAFFTSIGIAAIPWMLLSEVFPLR 93
L F ++G +PW+++SE+FPL
Sbjct: 391 LFIAFFAMGWGPVPWVIVSEIFPLS 415
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 41.1 bits (97), Expect = 2e-05
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSA--LTCGILSYKGTVGSQILPFI 65
I V F+ + +++ ++ R G+RPL L+ G A L +L + G+ I+ +
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIV 352
Query: 66 MLLLLAFFTSIGIAAIPWMLLSEVFPLR 93
+LL F ++G +PW+++SE+FPL
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLG 380
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 35.8 bits (83), Expect = 0.002
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIM 66
I V +++++ + + G++PL +I G A + G Y G L ++
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371
Query: 67 LLLLAFFTSIGIAAIPWMLLSEVFP 91
+ AF S G + W+LLSE+FP
Sbjct: 372 FYVAAFAMSWG--PVCWVLLSEIFP 394
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 29.1 bits (66), Expect = 0.32
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLL 68
+G+ + + KR GK+ L+ + A + L F++L+
Sbjct: 265 IGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW-----LFLVLV 319
Query: 69 LLAFFTSIGIAAIPWMLLSEV 89
+LA +PW +L++V
Sbjct: 320 VLAGIGLGLATLLPWAMLADV 340
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 27.8 bits (62), Expect = 0.85
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 71 AFFTSIGIAAIPWMLLSEVFP 91
AFF+ IG A + WML S++ P
Sbjct: 204 AFFSFIGSARVGWMLRSKLAP 224
>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.
Length = 520
Score = 27.3 bits (61), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 19 IVSMCIIKRI----GKRPLSLISIGGTAFSALTCGILS 52
IVS C +++I G P SL+ GG + L IL+
Sbjct: 393 IVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILA 430
>gnl|CDD|233663 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
oxidoreductase, chain L. This model describes the 12th
(based on E. coli) structural gene, L, of bacterial
NADH dehydrogenase I, as well as chain 5 of the
corresponding mitochondrial complex I and subunit 5 (or
F) of the chloroplast NAD(P)H-plastoquinone
dehydrogenase complex [Energy metabolism, Electron
transport].
Length = 609
Score = 27.2 bits (61), Expect = 1.5
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML 67
+F+P IG +++ +RIG+R +I IG SA + + + F
Sbjct: 7 VFLP---LIGFLIAGLFGRRIGERVSGIIGIGSVGLSAALSAFVFVDFFLNGEGEAFTQS 63
Query: 68 LL 69
L
Sbjct: 64 LF 65
>gnl|CDD|188587 TIGR04072, rSAM_ladder_B12, lipid biosynthesis B12-binding/radical
SAM protein. Members of this protein family occur in
conserved genomic contexts highly suggestive of lipid
biosynthesis, including an island shared between
Kuenenia stuttgartiensis, which produces ladderanes, and
Desulfotalea psychrophila, which produces a different
kind of unusual polyunsaturated hydrocarbon.
Length = 151
Score = 26.1 bits (58), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 12 TTGFIGSIVSMC-IIKRIGKRPLSLISIGGTAFSALTCGILSYKG 55
+ +I ++ +I+ + K P I +GG AFS + +L Y G
Sbjct: 74 SENYINGAKNIVDLIRELSKAP---IVLGGPAFSLMPEELLEYLG 115
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 26.1 bits (58), Expect = 3.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 30 KRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAF 72
KR LS I +G AFS + + S I ++++ L F
Sbjct: 7 KRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIF 49
>gnl|CDD|214383 CHL00168, pbsA, heme oxygenase; Provisional.
Length = 238
Score = 25.5 bits (56), Expect = 4.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 13 TGFIGSIVSMCIIKRIGKRPLSLISIGGTAF 43
T ++G + I+K+I +R ++L GG AF
Sbjct: 126 TRYLGDLSGGQILKKIAQRAMNLSDSGGLAF 156
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 25.6 bits (56), Expect = 5.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 73 FTSIGIAAIPWMLLSEVFPLR 93
FTS A W + FPLR
Sbjct: 129 FTSASAARETWKTIHRAFPLR 149
>gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Proteins of this family have
not been characterized. Their specific function is
unknown.
Length = 377
Score = 25.6 bits (57), Expect = 5.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 6 PQIFVPTTGFIGSIVS-MCII---KRIGKRPLSLIS 37
P I +PTT G+ VS II +R K +++IS
Sbjct: 129 PLICIPTTAGSGADVSQFAIITDTER--KVKMAIIS 162
>gnl|CDD|221263 pfam11847, DUF3367, Domain of unknown function (DUF3367). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 667 to 694 amino acids in length.
Length = 677
Score = 25.5 bits (56), Expect = 5.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 27 RIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL 86
IG P ++ A+ AL+ +L+ G + S+ LP+ +L PW+LL
Sbjct: 99 GIGSPPSRVL--AAVAY-ALSPRVLTTLGAISSEALPYALL--------------PWVLL 141
Query: 87 SEVFPLRSVFRY 98
+ LRS R
Sbjct: 142 PLIRGLRSPRRA 153
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 25.3 bits (56), Expect = 7.2
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML 67
+ IG I+ ++K+ GK+ + + G A+ +L + + + I++
Sbjct: 279 LASGAGLLIGLILWPRLVKKFGKK---KLFLIGLLLLAVGYLLLYF---TPAGSVVLIVV 332
Query: 68 LLLAFFTSIGIA-AIPWMLLSEV 89
L+ GIA +PW ++++
Sbjct: 333 ALIIAGVGTGIANPLPWAMVADT 355
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 25.4 bits (56), Expect = 7.5
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLL 68
F+P ++ I +I I K + S +L I F+
Sbjct: 512 FIPQLSWLIIIFGYLVILIIYKW-----LVDWAKTSKPAPSLLI------GLINMFLFPG 560
Query: 69 LLAFFTSIGIAAIPWMLLSEVFPL 92
+ F + + +P +LL + PL
Sbjct: 561 VQVFLVVLALVCVPILLL--LKPL 582
>gnl|CDD|234359 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 25.0 bits (55), Expect = 8.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYK----GTVGSQILP 63
+F+ +G ++ ++K IG PL+L + GG S L G L K G + S
Sbjct: 389 VFLGLGIVLGLLIGAIVVK-IGSIPLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASW 447
Query: 64 FIMLLLLA-FFTSIGIAAIP 82
+ L LA F +G++A P
Sbjct: 448 LLKDLGLALFIAVVGLSAGP 467
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.146 0.450
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,221,791
Number of extensions: 451948
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 216
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)