RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7008
(101 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.15
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 20/61 (32%)
Query: 6 PQIFVPTTGFIGSIVSMCIIKRI---GKRPLSLI----SIGGTAFSALTC--GILSYKGT 56
P + + + + + G P S+G ++AL ++S +
Sbjct: 1734 PALTL---------MEKAAFEDLKSKGLIPADATFAGHSLG--EYAALASLADVMSIESL 1782
Query: 57 V 57
V
Sbjct: 1783 V 1783
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 28.5 bits (63), Expect = 0.32
Identities = 9/45 (20%), Positives = 11/45 (24%), Gaps = 6/45 (13%)
Query: 59 SQILPFIMLLLLAFFTSIGIA----AIPWM--LLSEVFPLRSVFR 97
Q L LL A W + P S+ R
Sbjct: 179 EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQR 223
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 26.9 bits (60), Expect = 1.1
Identities = 8/82 (9%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 14 GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFF 73
G G+++ + ++ + + +T + Y ++ +++ F
Sbjct: 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTL--VTIATIVYWMNPAGNPTVDMICMIVIGF 358
Query: 74 TSIGIAAIPWMLLSEVFPLRSV 95
G + + E+ P ++
Sbjct: 359 LIYGPVMLIGLHALELAPKKAA 380
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 26.2 bits (57), Expect = 1.8
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 17 GSIVSMCIIKRIGKRPLSLISIG----GTAFSALTCGILSYKGTVGSQILPFIMLLLLAF 72
G + S + S+ +IG G+ F+ +G + ++ AF
Sbjct: 89 GGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADF------VQGVLAYDPTGLSSTVIAAF 142
Query: 73 FTSIGIAAIPWMLLS 87
GI +
Sbjct: 143 VNVFGILTSSSNNTN 157
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 25.7 bits (56), Expect = 3.4
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 59 SQILPFIMLLLLAFFTSIGIA----AIPWM--LLSEVFPLRSVFR 97
SQ++ I L F + + A WM LL F + +V R
Sbjct: 208 SQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIR 252
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 25.3 bits (56), Expect = 4.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 38 IGGTAFSALTCGILSYK 54
+G +S L CGI+S K
Sbjct: 238 VGAMTWSPLACGIVSGK 254
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Length = 263
Score = 25.2 bits (55), Expect = 4.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 41 TAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGI 78
TAF+ I+ KG + + I F+M L GI
Sbjct: 54 TAFNNKKAAIIHEKGILNNYISSFLMKKL----IDKGI 87
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 24.5 bits (54), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 38 IGGTAFSALTCGILSYK 54
+G +S L CGI+S K
Sbjct: 204 VGAMTWSPLACGIVSGK 220
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 24.2 bits (53), Expect = 9.1
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 62 LPFIMLLLLAFFTSIGIAAIPW 83
L +++ +A F + AI +
Sbjct: 717 LNIELVVFIAIFADVATLAIAY 738
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 24.3 bits (54), Expect = 9.2
Identities = 5/21 (23%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 7 QIFVPTTGFIGSIVSMCIIKR 27
+ +P ++G+++++C+ KR
Sbjct: 407 HMLLPQA-YLGNVITLCVEKR 426
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.146 0.450
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,474,639
Number of extensions: 72884
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 26
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.7 bits)