RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7008
         (101 letters)



>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 24.5 bits (53), Expect = 3.2
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 39  GGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAA 80
                S L+ G ++ KG V S+++P     L+  +T   + A
Sbjct: 482 ALLTMSPLSAGEVTVKGAVVSEVVPAE---LIGSYTPESLNA 520


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
           [TaxId: 10754]}
          Length = 554

 Score = 23.0 bits (49), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 38  IGGTAFSALTCGILSYKGTVGS 59
           IG T++ A   G+ +++GTVGS
Sbjct: 238 IGFTSYRAGESGVKTWQGTVGS 259


>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF
          {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 35

 Score = 21.3 bits (45), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 10 VPTTGFIGSIVSMCIIKR 27
          VPT  F+G+I +M  I+R
Sbjct: 18 VPTIFFLGAIAAMQFIQR 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.146    0.450 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,710
Number of extensions: 13469
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)