BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy701
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OO0|A Chain A, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
pdb|1RK8|B Chain B, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|B Chain B, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|D Chain D, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 147
Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 127/146 (86%), Positives = 138/146 (94%)
Query: 13 AGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDEL 72
+ +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+EL
Sbjct: 2 STEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61
Query: 73 KRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLR 132
KRII +SE+M EDD WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLR
Sbjct: 62 KRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLR 121
Query: 133 CFYYLVQDLKCLVFSLIGLHYKIKPI 158
CFYYLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 122 CFYYLVQDLKCLVFSLIGLHFKIKPI 147
>pdb|1HL6|B Chain B, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|D Chain D, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
Length = 149
Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 127/146 (86%), Positives = 138/146 (94%)
Query: 13 AGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDEL 72
+ +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+EL
Sbjct: 2 STEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61
Query: 73 KRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLR 132
KRII +SE+M EDD WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLR
Sbjct: 62 KRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLR 121
Query: 133 CFYYLVQDLKCLVFSLIGLHYKIKPI 158
CFYYLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 122 CFYYLVQDLKCLVFSLIGLHFKIKPI 147
>pdb|2HYI|A Chain A, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|G Chain G, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2J0Q|C Chain C, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|F Chain F, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|C Chain C, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
pdb|3EX7|A Chain A, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|E Chain E, The Crystal Structure Of Ejc In Its Transition State
pdb|2XB2|C Chain C, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Y Chain Y, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 146
Score = 268 bits (686), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 125/143 (87%), Positives = 135/143 (94%)
Query: 16 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRI 75
DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKEAYVHK VM+ELKRI
Sbjct: 4 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 63
Query: 76 INESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
I++SE+ EDD+LWP PDR+GRQELEIVIGDEHISFTTSK GSL+DVN SKDP+GLR FY
Sbjct: 64 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 123
Query: 136 YLVQDLKCLVFSLIGLHYKIKPI 158
YLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 124 YLVQDLKCLVFSLIGLHFKIKPI 146
>pdb|1P27|A Chain A, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|C Chain C, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 144
Score = 266 bits (681), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 124/142 (87%), Positives = 134/142 (94%)
Query: 16 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRI 75
DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKEAYVHK VM+ELKRI
Sbjct: 3 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRI 62
Query: 76 INESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
I++SE+ EDD+LWP PDR+GRQELEIVIGDEHISFTTSK GSL+DVN SKDP+GLR FY
Sbjct: 63 IDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFY 122
Query: 136 YLVQDLKCLVFSLIGLHYKIKP 157
YLVQDLKCLVFSLIGLH+KIKP
Sbjct: 123 YLVQDLKCLVFSLIGLHFKIKP 144
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 30.0 bits (66), Expect = 0.55, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
DS+ P IGR + E++IGD T KT +D ++ G++C Y
Sbjct: 154 DSMIP----IGRGQRELIIGDRQ----TGKTALAIDAIINQRDSGIKCIY 195
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 47 ANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGD 106
A N T E V C ++E +RI + ++P D+ R L ++I +
Sbjct: 14 AVQDNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICN 68
Query: 107 EHISFTTSKTGSLVDVN 123
E +TG+ VD+
Sbjct: 69 EEFDSIPRRTGAEVDIT 85
>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 12 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 66
Query: 121 DVN 123
D+
Sbjct: 67 DIT 69
>pdb|3D6H|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 12 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 66
Query: 121 DVN 123
D+
Sbjct: 67 DIT 69
>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 11 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 65
Query: 121 DVN 123
D+
Sbjct: 66 DIT 68
>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 12 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 66
Query: 121 DVN 123
D+
Sbjct: 67 DIT 69
>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 11 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 65
Query: 121 DVN 123
D+
Sbjct: 66 DIT 68
>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|2FQQ|A Chain A, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
Length = 178
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 11 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 65
Query: 121 DVN 123
D+
Sbjct: 66 DIT 68
>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-3-
Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2H48|A Chain A, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
pdb|2HBQ|A Chain A, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBY|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4W|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H54|A Chain A, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 11 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 65
Query: 121 DVN 123
D+
Sbjct: 66 DIT 68
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLV 120
E V C ++E +RI + ++P D+ R L ++I +E +TG+ V
Sbjct: 27 EGNVKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEV 81
Query: 121 DVN 123
D+
Sbjct: 82 DIT 84
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 21 YYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVM 69
++ G +G GH F DG R++ N++Y M+R A +K VM
Sbjct: 187 FHGGWRGTVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPANKLVM 234
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 21 YYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVM 69
++ G +G GH F DG R++ N++Y M+R A +K VM
Sbjct: 187 FHGGWRGTVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPANKLVM 234
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 95 IGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLI 149
IGR + E++IGD T KT +D ++ G+ C Y + K + +I
Sbjct: 172 IGRGQRELIIGDRQ----TGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARII 222
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 131 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 182
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 183 IGQKRSTVAQLV 194
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 197 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 248
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 249 IGQKRSTVAQLV 260
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 205
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 206 IGQKRSTVAQLV 217
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 136 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 187
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 188 IGQKRSTVAQLV 199
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 205
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 206 IGQKRSTVAQLV 217
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 205
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 206 IGQKRSTVAQLV 217
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 205
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 206 IGQKRSTVAQLV 217
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDG------LRCFYYL 137
DSL P IGR + E++IGD T KT +D +N + DG L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA 205
Query: 138 VQDLKCLVFSLI 149
+ + V L+
Sbjct: 206 IGQKRSTVAQLV 217
>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|A Chain A, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
Length = 167
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 64 VHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVN 123
V C ++E +RI + ++P D+ R L ++I +E +TG+ VD+
Sbjct: 3 VKLCSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDIT 57
>pdb|3NS7|A Chain A, Succinic Acid Amides As P2-P3 Replacements For Inhibitors
Of Interleukin-1beta Converting Enzyme (Ice Or Caspase
1)
Length = 162
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 67 CVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVN 123
C ++E +RI + ++P D+ R L ++I +E +TG+ VD+
Sbjct: 1 CSLEEAQRIWKQKSA-----EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDIT 52
>pdb|3NUR|A Chain A, Crystal Structure Of A Putative Amidohydrolase From
Staphylococcus Aureus
Length = 357
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 23 VGHKGKFGHEFLEFEFRPDGKLRYANNSN------YKNDTMIRKEAYVHKCVMDELKRII 76
+GH G+F FLE R D L +A + N +KN I + K D +K+ +
Sbjct: 251 IGHWGEFIPFFLE---RXDEAL-FAEHLNHSVSYYFKNSFYITPSGXLTKPQFDLVKKEV 306
Query: 77 NESEVMHEDDSLWPQPDRIGRQELEIVIGDEH---ISFTTS 114
+++ D + +P+++G E+ + DE IS+T
Sbjct: 307 GIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNG 347
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure
Length = 203
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 12 GAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMI 58
Q +YYVG K F +F + E + + S+ KN MI
Sbjct: 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMI 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,311,380
Number of Sequences: 62578
Number of extensions: 220993
Number of successful extensions: 539
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 31
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)