Query psy701
Match_columns 158
No_of_seqs 83 out of 104
Neff 2.9
Searched_HMMs 29240
Date Sat Aug 17 00:30:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oo0_A MAGO nashi protein; RNA 100.0 2E-101 5E-106 609.3 13.5 145 14-158 3-147 (147)
2 3omy_A Protein TRAM; DNA bindi 38.7 9.2 0.00031 25.6 0.7 23 57-79 1-23 (52)
3 3cqn_A Violaxanthin DE-epoxida 37.7 22 0.00076 28.4 3.0 60 12-92 112-177 (185)
4 3on0_A Protein TRAM; DNA bindi 31.9 30 0.001 26.7 2.7 23 57-79 1-23 (127)
5 2avt_A DNA polymerase III beta 28.8 1.8E+02 0.0062 24.2 7.2 38 61-115 200-237 (378)
6 2l7y_A Putative endo-beta-N-ac 26.4 71 0.0024 23.2 3.8 22 92-113 58-79 (98)
7 1dp3_A TRAM protein; helix-loo 23.1 17 0.00057 24.5 -0.1 21 59-79 2-22 (55)
8 2l7q_A Conserved protein found 22.6 80 0.0027 24.2 3.6 29 14-56 43-71 (124)
9 2l3b_A Conserved protein found 21.9 62 0.0021 25.0 2.9 29 14-56 44-72 (130)
10 2dia_A Filamin-B; beta-sandwic 19.4 61 0.0021 22.4 2.2 35 92-132 74-110 (113)
No 1
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=100.00 E-value=1.5e-101 Score=609.34 Aligned_cols=145 Identities=88% Similarity=1.445 Sum_probs=143.3
Q ss_pred CCceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCceEEEEEEeeHHHHHHHHHHhhhcccccccCCCCCCCC
Q psy701 14 GQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPD 93 (158)
Q Consensus 14 ~~~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~~IrKE~~vs~~v~~E~kRII~~SeI~kEdD~~WP~pd 93 (158)
+++||||||+||+||||||||||||||||+||||||||||||+|||||||||++||+|+||||.+|||++|||++||+||
T Consensus 3 ~~~fYlRYY~GH~GkfGhEfLEfEfr~dG~lrYaNnSnYknd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd 82 (147)
T 1oo0_A 3 TEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPD 82 (147)
T ss_dssp -CCEEEEEEEEEEETTEEEEEEEEECTTSEEEEEEECCTTSSCCEEEEEEECHHHHHHHHHHHHHHTGGGCCCTTSCCCC
T ss_pred CCcEEEEEEecccCcccceEEEEEecCCCeEEEeccCCCcCCeeEEEEEEecHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEECCeEEEEEeccccceeeccCCCCCcchhhhHHHHHHHHHHHHHHhhhceeeccC
Q psy701 94 RIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI 158 (158)
Q Consensus 94 ~~GrQELEI~~g~~HisF~tsKiGSl~dvq~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi 158 (158)
++|||||||+|||+||||+|||||||+|||+|+||||||+||||||||||||||||+||||||||
T Consensus 83 ~~GrQELEI~~g~~HisF~tskigSl~dv~~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi 147 (147)
T 1oo0_A 83 RVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI 147 (147)
T ss_dssp SSEEEEEEEEETTEEEEEEECCCCCHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcCceeEEEEECCEEEEEEecCcccHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHhheeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 2
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=38.72 E-value=9.2 Score=25.56 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=19.0
Q ss_pred eEEEEEEeeHHHHHHHHHHhhhc
Q psy701 57 MIRKEAYVHKCVMDELKRIINES 79 (158)
Q Consensus 57 ~IrKE~~vs~~v~~E~kRII~~S 79 (158)
|=|..+|+|..|.++|..|+++-
T Consensus 1 M~rvq~Y~s~~v~~~I~~iVe~r 23 (52)
T 3omy_A 1 MPKIQTYVNNNVYEQITDLVTIR 23 (52)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCceeeeechHHHHHHHHHHHHH
Confidence 34778999999999999998753
No 3
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A
Probab=37.67 E-value=22 Score=28.41 Aligned_cols=60 Identities=17% Similarity=0.392 Sum_probs=40.3
Q ss_pred CCCCceEEEEecccCC-cccceeEEEEEcCCCceeeecCCCCCCCceEEEEEEeeHHHHHHHHHHhhhcc-----ccccc
Q psy701 12 GAGQDFYIRYYVGHKG-KFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESE-----VMHED 85 (158)
Q Consensus 12 ~~~~~FYlRYY~GH~G-kfGHEFLEfEfr~dG~lRYaNNSnYKnd~~IrKE~~vs~~v~~E~kRII~~Se-----I~kEd 85 (158)
++-++||+=||-|+++ .- .|..-.+.=+.-.+++++++|++++...-. |+.-|
T Consensus 112 ~~~~dy~~VYy~G~~~~~~---------------------~y~ga~LY~Rsp~l~peale~f~~fa~~~Gl~~e~~~~~d 170 (185)
T 3cqn_A 112 NKPEDYIFVYYRGRNDAWD---------------------GYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTD 170 (185)
T ss_dssp SSTTCEEEEEEEEEEETTE---------------------EEEEEEEEESSSSCCGGGHHHHHHHHHHTTCCGGGSEECC
T ss_pred CCCCCEEEEEEEeecCCCc---------------------eeeeEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHEEEec
Confidence 3556899999998754 21 233445666667899999999999988655 56656
Q ss_pred CCCCCCC
Q psy701 86 DSLWPQP 92 (158)
Q Consensus 86 D~~WP~p 92 (158)
++-=|+|
T Consensus 171 n~c~~~~ 177 (185)
T 3cqn_A 171 NTCGPEP 177 (185)
T ss_dssp CCCC---
T ss_pred CCCCCCC
Confidence 6655555
No 4
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=31.93 E-value=30 Score=26.68 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=19.5
Q ss_pred eEEEEEEeeHHHHHHHHHHhhhc
Q psy701 57 MIRKEAYVHKCVMDELKRIINES 79 (158)
Q Consensus 57 ~IrKE~~vs~~v~~E~kRII~~S 79 (158)
|=|..+|||..|.++|..|+.+-
T Consensus 1 M~riq~Yvs~~v~~~I~~iVe~r 23 (127)
T 3on0_A 1 MPKIQTYVNNNVYEQITDLVTIR 23 (127)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHH
T ss_pred CCchhhhhhHHHHHHHHHHHHHH
Confidence 45889999999999999998753
No 5
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=28.84 E-value=1.8e+02 Score=24.17 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=29.3
Q ss_pred EEEeeHHHHHHHHHHhhhcccccccCCCCCCCCCCCceeEEEEECCeEEEEEecc
Q psy701 61 EAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSK 115 (158)
Q Consensus 61 E~~vs~~v~~E~kRII~~SeI~kEdD~~WP~pd~~GrQELEI~~g~~HisF~tsK 115 (158)
++-|....+.|++|++.++ ..+++|.+++.++.|.+..
T Consensus 200 ~~iiP~k~l~el~kll~~~-----------------~~~v~i~~~~~~i~f~~~~ 237 (378)
T 2avt_A 200 MVVLPSKSLREFSAVFTDD-----------------IETVEVFFSPSQILFRSEH 237 (378)
T ss_dssp EEEEEHHHHHHHHHHSCTT-----------------CCEEEEEECSSEEEEECSS
T ss_pred EEEEEhHHHHHHHHhcccC-----------------CceEEEEEcCCEEEEEECC
Confidence 5778889999999998421 1458888888899988753
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=26.38 E-value=71 Score=23.19 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCCCCceeEEEEECCeEEEEEe
Q psy701 92 PDRIGRQELEIVIGDEHISFTT 113 (158)
Q Consensus 92 pd~~GrQELEI~~g~~HisF~t 113 (158)
+.+.|+|.|-|.+++.-.+|+.
T Consensus 58 s~~~G~QtlTVtY~G~t~~f~V 79 (98)
T 2l7y_A 58 AQKTGRQTLTLHYQGHEVSFDV 79 (98)
T ss_dssp TTSCSSEEEEEEETTEEEEEEE
T ss_pred CCCCCcEEEEEEECCEEEEEEE
Confidence 3457999999999999999975
No 7
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=23.08 E-value=17 Score=24.53 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.9
Q ss_pred EEEEEeeHHHHHHHHHHhhhc
Q psy701 59 RKEAYVHKCVMDELKRIINES 79 (158)
Q Consensus 59 rKE~~vs~~v~~E~kRII~~S 79 (158)
|..+|||..+.++|..|+.+-
T Consensus 2 rvq~Yvs~~v~~~I~~ive~r 22 (55)
T 1dp3_A 2 KVQAYVSDEIVYKINKIVERR 22 (55)
T ss_dssp CCSSCCCCTHHHHHHHHHHHH
T ss_pred cceeehhhHHHHHHHHHHHHH
Confidence 457899999999999999753
No 8
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=22.64 E-value=80 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=20.2
Q ss_pred CCceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCc
Q psy701 14 GQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT 56 (158)
Q Consensus 14 ~~~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~ 56 (158)
...|++||+- +...|.||+.|..-+++..
T Consensus 43 ~t~Y~IRYFQ--------------~dGkG~L~~~~Gtvl~PND 71 (124)
T 2l7q_A 43 GTVYTLRYFQ--------------PDGKGSLKMEDGTVLKPND 71 (124)
T ss_dssp CCCCEEEEEC--------------CSSCEEEEETTSCBCCTTC
T ss_pred ccEEEEEEEe--------------ecCCeeEEecCCcEecccc
Confidence 5567788754 3355569999988887643
No 9
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=21.88 E-value=62 Score=25.00 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=20.1
Q ss_pred CCceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCc
Q psy701 14 GQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDT 56 (158)
Q Consensus 14 ~~~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~ 56 (158)
+..|++||+- +.+.|.||+.|..-+++..
T Consensus 44 ~t~Y~IRYFQ--------------~dGkG~L~~~dg~~l~PND 72 (130)
T 2l3b_A 44 ETKYFIRYFQ--------------PDGAGTLKMSDGTVLLPND 72 (130)
T ss_dssp SCCCEEEEEC--------------SSCCCEEEETTSCEECTTS
T ss_pred ccEEEEEEEe--------------ecCCeeEEeCCCCEecCCc
Confidence 4567788754 3455669999888887643
No 10
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=19.38 E-value=61 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCCCCceeEEEEECCeEEEEEecccccee--eccCCCCCcchh
Q psy701 92 PDRIGRQELEIVIGDEHISFTTSKTGSLV--DVNHSKDPDGLR 132 (158)
Q Consensus 92 pd~~GrQELEI~~g~~HisF~tsKiGSl~--dvq~S~DPeGLr 132 (158)
|...|.=.|+|.++++||. ||.. .|..+-||...+
T Consensus 74 p~~~G~y~i~V~~~g~~V~------gSPf~v~v~~~~d~skv~ 110 (113)
T 2dia_A 74 PLTAGMYTLTMKYGGELVP------HFPARVKVEPAVDTSSGP 110 (113)
T ss_dssp CSSCEEEEEEEEETTEECT------TCSEEEEEECCCCSSCCC
T ss_pred eCCCccEEEEEEECCEECC------CCCEEEEEcccCCcceeE
Confidence 5567999999999999993 5533 344455665443
Done!