RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy701
(158 letters)
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein
complex, EXON junct complex, signaling protein; 1.85A
{Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B
2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A*
1p27_A
Length = 147
Score = 243 bits (620), Expect = 4e-84
Identities = 127/144 (88%), Positives = 137/144 (95%)
Query: 15 QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKR 74
+DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+ELKR
Sbjct: 4 EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKR 63
Query: 75 IINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCF 134
II +SE+M EDD WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLRCF
Sbjct: 64 IIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCF 123
Query: 135 YYLVQDLKCLVFSLIGLHYKIKPI 158
YYLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 124 YYLVQDLKCLVFSLIGLHFKIKPI 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 3e-04
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 30/132 (22%)
Query: 37 EFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVM----DELKRIINESEVMHED------- 85
E DG + N+K+ + + + E +++ + V
Sbjct: 335 ESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 86 -DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQ-DLKC 143
+W + ++ +V+ H SLV+ K P + +LK
Sbjct: 392 LSLIWFDVIK---SDVMVVVNKLHKY-------SLVE----KQPKESTISIPSIYLELKV 437
Query: 144 LVFSLIGLHYKI 155
+ + LH I
Sbjct: 438 KLENEYALHRSI 449
Score = 35.6 bits (81), Expect = 0.004
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 16 DFYIRYYVGH----------KGKFGHEFLEFEFRPDGKLRYA----NNSNYKNDTMIRKE 61
D Y ++GH F FL+F F + K+R+ N S +T+ + +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQLK 528
Query: 62 AYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD 121
Y K I +++ P+ +R+ L+ + E SK L+
Sbjct: 529 FY---------KPYICDND---------PKYERLVNAILDFLPKIEENLI-CSKYTDLLR 569
Query: 122 VNHSKDPDGL 131
+ + + +
Sbjct: 570 IALMAEDEAI 579
Score = 34.1 bits (77), Expect = 0.017
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 31 HEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVH----KCVMDELKRIINESEVMHEDD 86
H ++FE G+ +Y YK+ + ++A+V K V D K I+++ E+ D
Sbjct: 4 HHHMDFET---GEHQY----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----D 52
Query: 87 SLWPQPDRIGR 97
+ D +
Sbjct: 53 HIIMSKDAVSG 63
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 28.4 bits (64), Expect = 1.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 16/58 (27%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD-------VNHSKDPD-GLRCFY 135
DSL P IGR + E++IGD T KT +D N D L C Y
Sbjct: 154 DSLVP----IGRGQRELIIGDRQ----TGKTSIAIDTIINQKRFNDGTDEKKKLYCIY 203
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 27.7 bits (62), Expect = 1.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDGLRCFY 135
DS+ P IGR + E++IGD T KT +D +N G+ C Y
Sbjct: 167 DSMIP----IGRGQRELIIGDRQ----TGKTAIAIDTIINQKG--QGVYCIY 208
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 27.7 bits (62), Expect = 2.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
D++ P +GR + E++IGD T KT D ++ + C Y
Sbjct: 155 DAMIP----VGRGQRELIIGDRQ----TGKTAVATDTILNQQGQNVICVY 196
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 27.6 bits (62), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDGLRCFY 135
DS+ P IGR + E++IGD T KT +D +N + C Y
Sbjct: 154 DSMIP----IGRGQRELIIGDRQ----TGKTTIAIDTIINQKG--QDVICIY 195
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 26.9 bits (60), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 86 DSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVD--VNHSKDPDGLRCFY 135
DS+ P IGR + E++IGD T KT +D +N G++C Y
Sbjct: 154 DSMIP----IGRGQRELIIGDRQ----TGKTALAIDAIINQRD--SGIKCIY 195
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic,
complete proteome, direct protein sequencing, Fe4S4,
iron, iron sulfur cluster; HET: 2MD MGD; 2.27A
{Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A*
1fdo_A* 1aa6_A*
Length = 715
Score = 26.0 bits (58), Expect = 6.9
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 23/65 (35%)
Query: 26 KGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRK------------EAYVHKCVMDELK 73
KG +G +F+ +L+ MIR+ EA + V + L
Sbjct: 44 KGYYGWDFINDTQILTPRLKTP---------MIRRQRGGKLEPVSWDEALNY--VAERLS 92
Query: 74 RIINE 78
I +
Sbjct: 93 AIKEK 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.431
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,524,950
Number of extensions: 142998
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 11
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)