RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy701
         (158 letters)



>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 141

 Score =  288 bits (738), Expect = e-102
 Identities = 124/141 (87%), Positives = 134/141 (95%)

Query: 15  QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKR 74
           +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+ELKR
Sbjct: 1   EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKR 60

Query: 75  IINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCF 134
           II +SE+M EDD  WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLRCF
Sbjct: 61  IIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCF 120

Query: 135 YYLVQDLKCLVFSLIGLHYKI 155
           YYLVQDLKCLVFSLIGLH+KI
Sbjct: 121 YYLVQDLKCLVFSLIGLHFKI 141


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 24.0 bits (52), Expect = 5.4
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 46 YANNSNYKNDTMIRKEAYVHKCVMDELKRI 75
            +N     D +   + +V +     +KRI
Sbjct: 54 AEHNDGADIDDLKVTKIFVDEGPS--MKRI 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,193
Number of extensions: 29176
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 5
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)