BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7014
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 243 VTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELS-------AG 295
+T++ L+ K LY+GG + + LP + GF GC+ V+L+ +
Sbjct: 951 ITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISD 1010
Query: 296 NVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWF-GPLC 351
+ N R EG ++ C +CS+ G C+ FSC C+ F GPLC
Sbjct: 1011 ALFCNGQIERGCEGP------STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1061
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 175 ILGVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG-YTVRVGKNGQQC 233
++ VDF + + +L ++ +D G +I + K G Y V ++G+
Sbjct: 477 MIKVDFFAIEMLDGHL----YLLLDMGSGTIKI---KALQKKVNDGEWYHVDFQRDGRSG 529
Query: 234 WLMVDNMGNVTSKSPGRLTQLNTKPMLYLGG-HFSKNFSILPHDL---PLHSGFSGCIFD 289
+ V+ + +PG L+ LYLGG +K + P ++ L+ G+ GCI D
Sbjct: 530 TISVNTL-RTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRD 588
Query: 290 VELSAGNVGINLYKTRAAEGRGVGQCG---TSQCHNHTCSHGGACMNHGATFSCLCA-DG 345
+ + + I + C C ++ C + G C + + C C+ G
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Query: 346 WFGPLC 351
+ G C
Sbjct: 649 YLGRSC 654
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 243 VTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELS-------AG 295
+T++ L+ K LY+GG + + LP + GF GC+ V+L+ +
Sbjct: 942 ITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISD 1001
Query: 296 NVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWF-GPLC 351
+ N R EG ++ C +CS+ G C+ FSC C+ F GPLC
Sbjct: 1002 ALFCNGQIERGCEGP------STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 175 ILGVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG-YTVRVGKNGQQC 233
++ VDF + + +L ++ +D G +I + K G Y V ++G+
Sbjct: 477 MIKVDFFAIEMLDGHL----YLLLDMGSGTIKI---KALQKKVNDGEWYHVDFQRDGRSG 529
Query: 234 WLMVDNMGNVTSKSPGRLTQLNTKPMLYLGG-HFSKNFSILPHDL---PLHSGFSGCIFD 289
+ V+ + +PG L+ LYLGG +K + P ++ L+ G+ GCI D
Sbjct: 530 TISVNTL-RTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRD 588
Query: 290 VELSAGNVGINLYKTRAAEGRGVGQCG---TSQCHNHTCSHGGACMNHGATFSCLCA-DG 345
+ + + I + C C ++ C + G C + + C C+ G
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Query: 346 WFGPLC 351
+ G C
Sbjct: 649 YLGRSC 654
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 243 VTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELS-------AG 295
+T++ L+ K LY+GG + + LP + GF GC+ V+L+ +
Sbjct: 726 ITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISD 785
Query: 296 NVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWF-GPLC 351
+ N R EG ++ C +CS+ G C+ FSC C+ F GPLC
Sbjct: 786 ALFCNGQIERGCEGP------STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 836
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 175 ILGVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG-YTVRVGKNGQQC 233
++ VDF + + +L ++ +D G +I + K G Y V ++G+
Sbjct: 252 MIKVDFFAIEMLDGHL----YLLLDMGSGTIKI---KALQKKVNDGEWYHVDFQRDGRSG 304
Query: 234 WLMVDNMGNVTSKSPGRLTQLNTKPMLYLGG-HFSKNFSILPHDL---PLHSGFSGCIFD 289
+ V+ + +PG L+ LYLGG +K + P ++ L+ G+ GCI D
Sbjct: 305 TISVNTL-RTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRD 363
Query: 290 VELSAGNVGINLYKTRAAEGRGVGQCG---TSQCHNHTCSHGGACMNHGATFSCLCA-DG 345
+ + + I + C C ++ C + G C + + C C+ G
Sbjct: 364 LFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 423
Query: 346 WFGPLC 351
+ G C
Sbjct: 424 YLGRSC 429
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 243 VTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELS-------AG 295
+T++ L+ K LY+GG + + LP + GF GC+ V+L+ +
Sbjct: 110 ITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISD 169
Query: 296 NVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWF-GPLC 351
+ N R EG ++ C +CS+ G C+ FSC C+ F GPLC
Sbjct: 170 ALFCNGQIERGCEGP------STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC 220
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 325 CSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
C H G C+N +F C C G+ GP C N C S C ATC+ ++C C P
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP--CQNDATCLDQIGEFQCICMP 72
Query: 385 GRTGKFCE--KDESLS 398
G G CE DE S
Sbjct: 73 GYEGVHCEVNTDECAS 88
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 317 TSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTH 376
++C ++ C + C++ F C+C G+ G C + C S+ C C+ +
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP--CLHNGRCLDKIN 102
Query: 377 SYECDCPPGRTGKFCEKD 394
++C+CP G TG C+ D
Sbjct: 103 EFQCECPTGFTGHLCQVD 120
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 325 CSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
C H G C+N +F C C G+ GP C N C S C ATC+ ++C C P
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP--CQNDATCLDQIGEFQCICMP 70
Query: 385 GRTGKFCE--KDESLS 398
G G CE DE S
Sbjct: 71 GYEGVHCEVNTDECAS 86
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 318 SQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHS 377
++C ++ C + C++ F C+C G+ G C + C S+ C C+ +
Sbjct: 44 NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP--CLHNGRCLDKINE 101
Query: 378 YECDCPPGRTGKFCE 392
++C+CP G TG C+
Sbjct: 102 FQCECPTGFTGHLCQ 116
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T+ C + +CS G C+ ++C C G++GP C
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D++ ++I ++Q M D P + + I+ RV + G L V
Sbjct: 73 DYIALAIVDGFVQ----MMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGS---LQVG 125
Query: 239 NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLP--LHSGFSGCIFDV 290
N +T SP TQL+T L+LGG + S+ H LP +GF GCI DV
Sbjct: 126 NEAPITGSSPLGATQLDTDGALWLGG--MERLSV-AHKLPKAYSTGFIGCIRDV 176
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D++ ++I ++Q M D P + + I+ RV + G L V
Sbjct: 76 DYIALAIVDGFVQ----MMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGS---LQVG 128
Query: 239 NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLP--LHSGFSGCIFDV 290
N +T SP TQL+T L+LGG + S+ H LP +GF GCI DV
Sbjct: 129 NEAPITGSSPLGATQLDTDGALWLGGM--ERLSV-AHKLPKAYSTGFIGCIRDV 179
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D++ ++I ++Q M D P + + I+ RV + G L V
Sbjct: 67 DYIALAIVDGFVQ----MMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGS---LQVG 119
Query: 239 NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLP--LHSGFSGCIFDV 290
N +T SP TQL+T L+LGG + S+ H LP +GF GCI DV
Sbjct: 120 NEAPITGSSPLGATQLDTDGALWLGGM--ERLSV-AHKLPKAYSTGFIGCIRDV 170
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRV--GKNGQQCWLM 236
DF+ ++++ +L+ D +G I + I+ G VRV +NG++ L
Sbjct: 63 DFVSLALHNRHLE----FRYDLGKGAAIIRSKEPIAL-----GTWVRVFLERNGRKGALQ 113
Query: 237 VDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVEL 292
V + V +SP T LN K LY+GG + +FS L + SGF G I V L
Sbjct: 114 VGDGPRVLGESPVPHTMLNLKEPLYVGG--APDFSKLARGAAVASGFDGAIQLVSL 167
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 316 GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLT 375
G S C + C H G+C + ++C C+ G+ G C N C R + C+P
Sbjct: 4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTD-GCQHFCLPGQ 62
Query: 376 HSYECDCPPG 385
SY C C G
Sbjct: 63 ESYTCSCAQG 72
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 178 VDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMV 237
D++ ++I GH+ + G + + +T+ + R +R + ++ L V
Sbjct: 62 ADYMALAIVD------GHLQLSYDLGSQPVVLRSTVKVNTNRW-LRIRAHREHREGSLQV 114
Query: 238 DNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILP--HDLPLH--SGFSGCIFDV 290
N VT SP TQL+T L+LGG LP LP +GF GC+ DV
Sbjct: 115 GNEAPVTGSSPLGATQLDTDGALWLGG-----LQKLPVGQALPKAYGTGFVGCLRDV 166
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 312 VGQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGA 369
+ +CGT++C +N CSH C + + CLC DG F + R D + +
Sbjct: 35 IKECGTNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQ 91
Query: 370 TCVPLTHSYECDCPPGRT----GKFCEKDESLSDISFSGRRSY--ISLPSSELHLII--- 420
CV L Y+C C G K C+ S++ + F+ R ++L SE +I
Sbjct: 92 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 151
Query: 421 -NESLSDISFSGRRSYIS 437
N D + R Y S
Sbjct: 152 RNVVALDTEVASNRIYWS 169
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T+ C +CS G C+ ++C C G++GP C
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 313 GQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGAT 370
G GT++C +N CSH C + + CLC DG F + R D + +
Sbjct: 1 GAMGTNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQL 57
Query: 371 CVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 58 CVNLEGGYKCQCEEG 72
>pdb|3RGB|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
pdb|3RGB|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
From Methylococcus Capsulatus (Bath)
Length = 414
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 159 LRSAQDTRLCCLPLHLILGVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPN-TISAKS 217
L SA D ++ L + + + MS S T + T RG + + P T+S K
Sbjct: 227 LVSATDRKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLELPAPTVSVKV 286
Query: 218 KRGGYTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDL 277
+ Y RV + L + N GN SP RL + T + +L K+ + P DL
Sbjct: 287 EDATY--RVPGRAMRMKLTITNHGN----SPIRLGEFYTASVRFLDSDVYKDTTGYPEDL 340
Query: 278 PLHSGFS---------GCIFDVELSAGNVGINLYK 303
G S G V+++A + +Y+
Sbjct: 341 LAEDGLSVSDNSPLAPGETRTVDVTASDAAWEVYR 375
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 338 FSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL-THSYECDCPPGRTGKFCE 392
+ CLC W G LC N C T C G TC Y+C CP G +G CE
Sbjct: 114 WQCLCETNWGGQLCDKDLNYC-GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
>pdb|1YEW|A Chain A, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|E Chain E, Crystal Structure Of Particulate Methane Monooxygenase
pdb|1YEW|I Chain I, Crystal Structure Of Particulate Methane Monooxygenase
Length = 382
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 159 LRSAQDTRLCCLPLHLILGVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPN-TISAKS 217
L SA D ++ L + + + MS S T + T RG + + P T+S K
Sbjct: 195 LVSATDRKVAMGFLAATILIVVMAMSSANSKYPITIPLQAGTMRGMKPLELPAPTVSVKV 254
Query: 218 KRGGYTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDL 277
+ Y RV + L + N GN SP RL + T + +L K+ + P DL
Sbjct: 255 EDATY--RVPGRAMRMKLTITNHGN----SPIRLGEFYTASVRFLDSDVYKDTTGYPEDL 308
Query: 278 PLHSGFS---------GCIFDVELSAGNVGINLYK 303
G S G V+++A + +Y+
Sbjct: 309 LAEDGLSVSDNSPLAPGETRTVDVTASDAAWEVYR 343
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 312 VGQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGA 369
+ +CGT++C +N CSH C + + CLC DG F + R D + +
Sbjct: 307 IKECGTNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQ 363
Query: 370 TCVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 364 LCVNLEGGYKCQCEEG 379
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 312 VGQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGA 369
+ +CGT++C +N CSH C + + CLC DG F + R D + +
Sbjct: 289 IKECGTNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQ 345
Query: 370 TCVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 346 LCVNLEGGYKCQCEEG 361
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 313 GQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGAT 370
G GT++C +N CS+ C + + CLC DG F + R D + +
Sbjct: 25 GAMGTNECLDNNGGCSY--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQL 81
Query: 371 CVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 82 CVNLEGGYKCQCEEG 96
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 299 INLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYN 356
+ ++ + + C T+ C N +CS G C+ ++C C G+ G C N
Sbjct: 101 VGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 361 TRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
T +CS CV ++Y C C PG +G CE+
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T++C C HGG C+ CLC G+ GP C
Sbjct: 442 CRTAKCEP-ACRHGGVCVRPN---KCLCKKGYLGPQC 474
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCE 392
T C C+ GW G C R C+ C G CV +C C G G CE
Sbjct: 428 TGKCCCSPGWEGDFC--RTAKCEPA---CRHGGVCV---RPNKCLCKKGYLGPQCE 475
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 313 GQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGAT 370
G GT++C +N CS+ C + + CLC DG F + R D + +
Sbjct: 1 GAMGTNECLDNNGGCSY--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQL 57
Query: 371 CVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 58 CVNLEGGYKCQCEEG 72
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T++C C HGG C+ CLC G+ GP C
Sbjct: 442 CRTAKCEP-ACRHGGVCVRPN---KCLCKKGYLGPQC 474
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCE 392
T C C+ GW G C R C+ C G CV +C C G G CE
Sbjct: 428 TGKCCCSPGWEGDFC--RTAKCEPA---CRHGGVCV---RPNKCLCKKGYLGPQCE 475
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 299 INLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
+ ++ + + C T+ C N +CS G C+ ++C C G+ G C
Sbjct: 101 VGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 361 TRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
T +CS CV ++Y C C PG +G CE+
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T++C C HGG C+ CLC G+ GP C
Sbjct: 421 CRTAKCEP-ACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
T C C+ GW G C R C+ C G CV +C C G G CE+
Sbjct: 407 TGKCCCSPGWEGDFC--RTAKCEPA---CRHGGVCV---RPNKCLCKKGYLGPQCEQ 455
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T++C C HGG C+ CLC G+ GP C
Sbjct: 421 CRTAKCEP-ACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
T C C+ GW G C R C+ C G CV +C C G G CE+
Sbjct: 407 TGKCCCSPGWEGDFC--RTAKCEPA---CRHGGVCV---RPNKCLCKKGYLGPQCEQ 455
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T++C C HGG C+ CLC G+ GP C
Sbjct: 421 CRTAKCEP-ACRHGGVCVRPN---KCLCKKGYLGPQC 453
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
T C C+ GW G C R C+ C G CV +C C G G CE+
Sbjct: 407 TGKCCCSPGWEGDFC--RTAKCEPA---CRHGGVCV---RPNKCLCKKGYLGPQCEQ 455
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 195 HMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQL 254
H D +G ++ P +S +TV+ ++ ++ VD + + G+ T L
Sbjct: 82 HFMFDLGKGRTKVSHPALLSDGK---WHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTL 138
Query: 255 NTKPMLYLGG---HF-SKNFSILPHDLPLHSGFSGCIFDVELSAGNVGINLYKTRAAEGR 310
+ + LYLGG H+ ++N + H +P CI ++ ++ G L K R
Sbjct: 139 DVERKLYLGGLPSHYRARNIGTITHSIP------ACIGEIMVN----GQQLDKDRPLSAS 188
Query: 311 GVGQC 315
V +C
Sbjct: 189 AVDRC 193
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSP-GRLTQLNTKPMLYLGGHFSKNFSILPHDLPLH 280
+T++ K+ + L VD +V ++SP T +T +Y+GG+ + I + L
Sbjct: 286 HTLQAHKSKHRIVLTVDG-NSVRAESPHTHSTSADTNDPIYVGGYPAH---IKQNSLSSR 341
Query: 281 SGFSGCIFDVELSAGNVGINLYKTRAAEGRGV 312
+ F GC+ ++ LS G+ +L +RA + +GV
Sbjct: 342 ASFRGCVRNLRLSRGSQVQSLDLSRAFDLQGV 373
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 317 TSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
T+ C + +CS G C+ ++C C G++GP C
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 35
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C + ++C C +G+ G C LC +C C +S
Sbjct: 4 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNS 61
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 62 VVCSCARGYTLADNGKAC 79
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C + ++C C +G+ G C LC +C C +S
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNS 101
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 102 VVCSCARGYTLADNGKAC 119
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 317 TSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
T++C +N CSH C + + CLC DG F + R D + + CV L
Sbjct: 2 TNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQLCVNL 58
Query: 375 THSYECDCPPG 385
Y+C C G
Sbjct: 59 EGGYKCQCEEG 69
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 316 GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
+ C + C HGG C+ C C G+ GP C
Sbjct: 44 ASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFC 79
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCEKDES 396
C G C+ + C CP G TG FC+ D +
Sbjct: 53 CLHGGRCLEVEGHRLCHCPVGYTGPFCDVDTA 84
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
QC H C + G C + ++C CA+G+ G C
Sbjct: 5 QCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNC 37
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
QC H C + G C ++C CA+G+ G C
Sbjct: 49 QCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNC 81
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 317 TSQC--HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
T++C +N CSH C + + CLC DG F + R D + + CV L
Sbjct: 2 TNECLDNNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQLCVNL 58
Query: 375 THSYECDCPPG 385
Y+C C G
Sbjct: 59 EGGYKCQCEEG 69
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 321 HNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYEC 380
+N CSH C + + CLC DG F + R D + + CV L Y+C
Sbjct: 6 NNGGCSH--VCNDLKIGYECLCPDG-FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 381 DCPPGRT----GKFCEKDESLSDISFSGRRSY--ISLPSSELHLII----NESLSDISFS 430
C G K C+ S++ + F+ R ++L SE +I N D +
Sbjct: 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 122
Query: 431 GRRSYIS 437
R Y S
Sbjct: 123 SNRIYWS 129
>pdb|1BMO|A Chain A, Bm-40, FsEC DOMAIN PAIR
pdb|1BMO|B Chain B, Bm-40, FsEC DOMAIN PAIR
Length = 233
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 320 CHNHTCSHGGAC-MNHGATFSCLCAD--------GWFGPLCASRYNLCDSTRHNCSFGAT 370
C NH C HG C ++ T C+C D G F +C++ DS+ C F AT
Sbjct: 2 CQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSS---CHFFAT 58
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C + ++C C +G+ G C LC +C C +S
Sbjct: 6 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNS 63
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C + ++C C +G+ G C LC +C C +S
Sbjct: 5 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNS 62
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 63 VVCSCARGYTLADNGKAC 80
>pdb|1NUB|A Chain A, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
pdb|1NUB|B Chain B, Helix C Deletion Mutant Of Bm-40 Fs-Ec Domain Pair
Length = 229
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 318 SQCHNHTCSHGGAC-MNHGATFSCLCAD--------GWFGPLCASRYNLCDSTRHNCSFG 368
+ C NH C HG C ++ T C+C D G F +C++ DS+ C F
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSS---CHFF 60
Query: 369 AT 370
AT
Sbjct: 61 AT 62
>pdb|2V53|A Chain A, Crystal Structure Of A Sparc-Collagen Complex
Length = 230
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 320 CHNHTCSHGGAC-MNHGATFSCLCAD--------GWFGPLCASRYNLCDSTRHNCSFGAT 370
C NH C HG C ++ T C+C D G F +C++ DS+ C F AT
Sbjct: 7 CQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSS---CHFFAT 63
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 312 VGQCGTSQC--HNHTCSHGGACMNHGATFSCLCADGW 346
+ +CGT++C +N CSH C + + CLC DG+
Sbjct: 40 IKECGTNECLDNNGGCSH--VCNDLKIGYECLCPDGF 74
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCE 392
C G +C +SYEC CP G GK CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
QC ++ C +GG+C + ++ C C G+ G C
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 325 CSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
C +GG C+ G C+C G++G C + N C +T N G TC + +C CPP
Sbjct: 187 CMNGGLCVTPGF---CICPPGFYGVNC-DKAN-CSTTCFN---GGTCF---YPGKCICPP 235
Query: 385 GRTGKFCE 392
G G+ CE
Sbjct: 236 GLEGEQCE 243
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C + ++C C +G+ G C LC +C C S
Sbjct: 6 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQAS 63
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 23/74 (31%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
QC + C +GG C + ++ C C G+ G NC AT
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEG--------------KNCELDAT-------- 87
Query: 379 ECDCPPGRTGKFCE 392
C+ GR +FC+
Sbjct: 88 -CNIKNGRCKQFCK 100
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCEKDES 396
C G C +SYEC C G GK CE D +
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDAT 87
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCA-SRYNLCDSTRHNCSFGATCVPLTHS 377
QC C + G C ++C C +G+ G C LC +C C +S
Sbjct: 5 QCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCD--QFCHEEQNS 62
Query: 378 YECDCPPGRT----GKFC 391
C C G T GK C
Sbjct: 63 VVCSCARGYTLADNGKAC 80
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 228 KNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCI 287
+ G++ + VD V+ +SPG +N K +Y+GG + + + L SG +GC+
Sbjct: 104 REGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGG--APDVATLTGGR-FSSGITGCV 160
Query: 288 FDVELSAGNVG 298
++ L + G
Sbjct: 161 KNLVLHSARPG 171
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 308 EGRGVGQCGTSQCHNHTCSHGGAC----MNHGATF---SCLCADGWFGPLCASRYNLCDS 360
E G C + CHN GG C G TF C C G+ G C N C+
Sbjct: 48 EPTSAGPCTPNPCHN-----GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEV 102
Query: 361 TRHNCSFGATCVPLTHSYECDCPPGRTGKFCE 392
C G C L +Y C+CP G+ C+
Sbjct: 103 EP--CKNGGICTDLVANYSCECPGEFMGRNCQ 132
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCEKDESLSDISF 402
C TC+ S+ CDC G G+FC+++ S + S
Sbjct: 22 CCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSL 59
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C + C HG C+ +FSC C GW G C + + + N C+
Sbjct: 18 CASLCCGHG-TCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR 76
Query: 380 CDCPPG 385
C C PG
Sbjct: 77 CSCAPG 82
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 356 NLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
N+CD+ +C G TC ++ C CP TG CEK
Sbjct: 364 NVCDNELLHCQNGGTC---HNNVRCLCPAAYTGILCEK 398
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCE 392
C ATC+ ++C C PG G +CE
Sbjct: 10 CQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 318 SQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
++C ++ C + C++ F C+C G+ G C
Sbjct: 3 NECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 369 ATCVPLTHSYECDCPPGRTGKFCEKDESLSDISF 402
TC+ S+ CDC G G+FC+++ S + S
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL 52
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C + C HG C++ +FSC C GW G C + + + N C+
Sbjct: 11 CASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR 69
Query: 380 CDCPPG 385
C C PG
Sbjct: 70 CSCAPG 75
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
QC + C +GG C ++ C C G+ G NC AT
Sbjct: 50 QCEPNPCLNGGLCKXDINSYECWCQVGFEG--------------KNCELDAT-------- 87
Query: 379 ECDCPPGRTGKFCE 392
C+ GR +FC+
Sbjct: 88 -CNIKNGRCKQFCK 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,492,515
Number of Sequences: 62578
Number of extensions: 642255
Number of successful extensions: 1588
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 189
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)