RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7014
(500 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 82.3 bits (204), Expect = 5e-19
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C ++ C + C++ F C+C G+ G C + C S C C+ + ++
Sbjct: 48 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS--SPCLHNGRCLDKINEFQ 105
Query: 380 CDCPPGRTGKFCEKD 394
C+CP G TG C+ D
Sbjct: 106 CECPTGFTGHLCQVD 120
Score = 81.9 bits (203), Expect = 7e-19
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
+ C H G C+N +F C C G+ GP C N C S + C ATC+ +
Sbjct: 9 SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS--NPCQNDATCLDQIGEF 66
Query: 379 ECDCPPGRTGKFCEKD 394
+C C PG G CE +
Sbjct: 67 QCICMPGYEGVHCEVN 82
Score = 49.1 bits (118), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDST 361
C + C H G C++ F C C G+ G LC +
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDA 127
Score = 44.1 bits (105), Expect = 1e-05
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 358 CDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKD 394
C + C C+ S+EC C G TG CE D
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 44
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 83.0 bits (205), Expect = 1e-18
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 16/140 (11%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG--YTVRVGKNGQQCWLM 236
DF+ ++++ +L+ D +G I + I+ G V + +NG++ L
Sbjct: 63 DFVSLALHNRHLE----FRYDLGKGAAIIRSKEPIAL-----GTWVRVFLERNGRKGALQ 113
Query: 237 VDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGN 296
V + V +SP T LN K LY+GG +FS L + SGF G I V L
Sbjct: 114 VGDGPRVLGESPVPHTMLNLKEPLYVGGA--PDFSKLARGAAVASGFDGAIQLVSLR--G 169
Query: 297 VGINLYKTRAAEGRGVGQCG 316
+ + V
Sbjct: 170 HQLLTQE-HVLRAVDVAPFA 188
Score = 41.4 bits (97), Expect = 2e-04
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 428 SFSGRRSYISLPSSELHLHEAC----IDLEIRPTKDKGLLMYFGHPQKNS--MMTLSLQG 481
F+G SY+ L + +++ GLL+Y G ++L+L
Sbjct: 13 DFNGF-SYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN 71
Query: 482 GVLELRVLMLGDRPKT 497
LE R LG
Sbjct: 72 RHLEFR-YDLGKGAAI 86
Score = 41.0 bits (96), Expect = 2e-04
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 64 GQASYSSSMSGLSSFSAY----VIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDA 119
G + + +G S+ ++ L+ F+ LL + GQ + D
Sbjct: 6 GSRPFLADFNG-FSYLELKGLHTFERDLGEKMALEMVFLARGPS--GLLLYNGQ--KTDG 60
Query: 120 ITDHLAVSFIKGYVVLTWNLGSGWYLVYFEHTY 152
D ++++ ++ ++LG G ++ +
Sbjct: 61 KGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPI 93
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 85.1 bits (210), Expect = 5e-18
Identities = 35/269 (13%), Positives = 72/269 (26%), Gaps = 68/269 (25%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHS 281
+ V + ++ + + +T++ L+ K LY+GG + + LP +
Sbjct: 90 HNVMISRDTSNLHTVKID-TKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 148
Query: 282 GFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCL 341
GF GC+ V+L+ +L + +
Sbjct: 149 GFQGCLASVDLN--GRLPDLISDALFCNGQIERG-------------------------- 180
Query: 342 CADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCP-PGRTGKFCEKDESLSDI 400
C C CS C+ + CDC +G C +
Sbjct: 181 ---------CEGPSTTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG--TTY 227
Query: 401 SFSGRRSYISLPSSELHLIINESLSDISFSGRRSYISLPSSELHLHEACIDLEIRPTKDK 460
FS I +Y P+ + + + +
Sbjct: 228 IFSKGGGQI------------------------TYKWPPNDRPSTRADRLAIGFSTVQKE 263
Query: 461 GLLMYFG-HPQKNSMMTLSLQGGVLELRV 488
+L+ + L + G + ++
Sbjct: 264 AVLVRVDSSSGLGDYLELHIHQGKIGVKF 292
Score = 51.5 bits (123), Expect = 3e-07
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 23/139 (16%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D+L + I+ + + + I N I K + VR ++G L VD
Sbjct: 277 DYLELHIHQGKIG----VKFNVGTDDIAIEESNAIINDGKY--HVVRFTRSGGNATLQVD 330
Query: 239 NMGNVTSKSPGR-LTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGNV 297
+ + GR LT N++ + +GG F G + + +
Sbjct: 331 SWPVIERYPAGRQLTIFNSQATIIIGG------------KEQGQPFQGQLSGLYYN---- 374
Query: 298 GINLYKTRAAEGRGVGQCG 316
G+ + A + G
Sbjct: 375 GLKVLNMAAENDANIAIVG 393
Score = 43.1 bits (101), Expect = 1e-04
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 427 ISFSGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLEL 486
++F + SY++L + + + + + + T GL++Y + ++ + L G L
Sbjct: 8 VTFKTKSSYVALATLQAY-TSMHLFFQFKTTSLDGLILYNSGDGNDFIV-VELVKGYLHY 65
Query: 487 R 487
Sbjct: 66 V 66
Score = 37.7 bits (87), Expect = 0.008
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 69 SSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSF 128
+ SS+ A + L F+F S D L+ + D D + V
Sbjct: 7 PVTFKTKSSYVALA-TLQAYTSMHLFFQFKTTSLD--GLILYNSGDG-----NDFIVVEL 58
Query: 129 IKGYVVLTWNLGSGWYLV 146
+KGY+ ++LG+G L+
Sbjct: 59 VKGYLHYVFDLGNGANLI 76
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 58 PPDIEIGQASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQH 117
P + G S G ++ L F + A+L +
Sbjct: 218 PLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE--AVLVRVDS---S 272
Query: 118 DAITDHLAVSFIKGYVVLTWNLGSGWYLVYFEHTYL 153
+ D+L + +G + + +N+G+ + + +
Sbjct: 273 SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 308
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 78.5 bits (194), Expect = 1e-17
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
QC C + G C + ++C C +G+ G C S N C +S
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL-DNGDCDQFCHEEQNSV 102
Query: 379 ECDCPPGRTGKFCEKD 394
C C G T K
Sbjct: 103 VCSCARGYTLADNGKA 118
Score = 70.8 bits (174), Expect = 5e-15
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C TCS+ A + C++ C C Y
Sbjct: 12 CMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64
Query: 380 CDCPPGRTGKFCEKD 394
C C G GK CE
Sbjct: 65 CTCLEGFEGKNCELF 79
Score = 47.3 bits (113), Expect = 8e-07
Identities = 7/52 (13%), Positives = 9/52 (17%), Gaps = 2/52 (3%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATC 371
C C + C CA G+ C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP--CGKQTLE 133
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 85.7 bits (211), Expect = 1e-17
Identities = 41/272 (15%), Positives = 77/272 (28%), Gaps = 67/272 (24%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGG----HFSKNFSILPHDL 277
+ VR+ + + L +D + + + + L++GG + + +
Sbjct: 85 HNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASV 144
Query: 278 PLHSGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGAT 337
F G I DV + + + G S C GG C+N G
Sbjct: 145 REREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGG-- 202
Query: 338 FSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCP-PGRTGKFCEKDES 396
C + CDC G GK C + +
Sbjct: 203 --------------------------------VCSVVDDQAVCDCSRTGFRGKDCSQGKE 230
Query: 397 LSDISFSGRRSYISLPSSELHLIINESLSDISFSGRRSYISLPSSELHLHEACIDLEIRP 456
+F G Y S+ + + I L +
Sbjct: 231 EYIATFKG-SEYFCYDLSQ-------------------------NPIQSSSDEITLSFKT 264
Query: 457 TKDKGLLMYFGHPQKNSMMTLSLQGGVLELRV 488
+ GL+++ G + + L+L+ G + L +
Sbjct: 265 LQRNGLMLHTG--KSADYVNLALKNGAVSLVI 294
Score = 77.6 bits (190), Expect = 4e-15
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHS 281
+ V + ++ + + +T++ L+ K LY+GG + + LP +
Sbjct: 922 HNVMISRDTSNLHTVKID-TKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 980
Query: 282 GFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQ---CGTSQCHNHTCSHGGACMNHGATF 338
GF GC+ V+L +L + + ++ C +CS+ G C+ F
Sbjct: 981 GFQGCLASVDL--NGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGF 1038
Query: 339 SCLCADGWF-GPLC 351
SC C+ F GPLC
Sbjct: 1039 SCDCSMTSFSGPLC 1052
Score = 71.4 bits (174), Expect = 4e-13
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 15/171 (8%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGH----FSKNFSILPHDL 277
Y V ++G+ + V+ +PG L+ LYLGG F
Sbjct: 518 YHVDFQRDGRSGTISVNT-LRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTA 576
Query: 278 PLHSGFSGCIFDVELSAGNVGI-NLYKTRAAEGRGVGQCG--TSQCHNHTCSHGGACMNH 334
L+ G+ GCI D+ + + I + + ++ G C ++ C + G C +
Sbjct: 577 LLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDG 636
Query: 335 GATFSCLCADGWFGPLCASRYNLCDSTRHNCSF-GATCVPLTHSYECDCPP 384
+ C C+ + C+ S+ G+ + +
Sbjct: 637 WNRYVCDCSGTGYLGRS------CEREATVLSYDGSMFMKIQLPVVMHTEA 681
Score = 61.4 bits (148), Expect = 4e-10
Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 10/153 (6%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D++ +++ + ++ G + + V+V +N +Q + VD
Sbjct: 279 DYVNLALKNGAVSLV----INLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVD 334
Query: 239 NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGNVG 298
+ T + T L + Y+GG S + P+ + F GC+ +V +V
Sbjct: 335 GILTTTGYTQEDYTMLGSDDFFYVGGSPS---TADLPGSPVSNNFMGCLKEVVYKNNDVR 391
Query: 299 INLYKTRAAEGRGVGQCGTSQCHNHTCSHGGAC 331
+ L + +G + C +
Sbjct: 392 LELSRL---AKQGDPKMKIHGVVAFKCENVATL 421
Score = 53.3 bits (127), Expect = 2e-07
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 20/113 (17%)
Query: 222 YTVRVGKNGQQCWLMVDNMGNVTSKSPGR-LTQLNTKPMLYLGGHFSKNFSILPHDLPLH 280
+ VR ++G L VD+ + GR LT N++ + +GG
Sbjct: 1146 HVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG------------KEQG 1193
Query: 281 SGFSGCIFDVELSAGNVGINLYKTRAA------EGRGVGQCGTSQCHNHTCSH 327
F G + + + V +N+ A R VG+ ++ +H H
Sbjct: 1194 QPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLVGEVPSASTSHHHHHH 1245
Score = 45.2 bits (106), Expect = 4e-05
Identities = 17/179 (9%), Positives = 44/179 (24%), Gaps = 32/179 (17%)
Query: 310 RGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGA 369
Q + + + + + + S + + +F
Sbjct: 753 SLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHL---QSLTFNG 809
Query: 370 TCVPLTHSYECDCPPGRTGKFCEKDESLSDISFSGRRSYISLPSSELHLIINESLSDISF 429
+F ++ ++F + SY++L + + + + F
Sbjct: 810 MAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQ-----AYTSMHLFF 864
Query: 430 SGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLELRV 488
+ + T GL++Y N + + L G L
Sbjct: 865 -----------------------QFKTTSLDGLILYNS-GDGNDFIVVELVKGYLHYVF 899
Score = 43.3 bits (101), Expect = 2e-04
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 28/176 (15%)
Query: 177 GVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG--YTVRVGKNGQQCW 234
D L + + ++ + V+ +GP +F ++ +TVRV + G+
Sbjct: 705 SADTLRLELDAGRVK----LTVNLGKGPETLFAGYNLN-----DNEWHTVRVVRRGKSLK 755
Query: 235 LMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSA 294
L VD+ +T + G T+L + + S + S F G + + +
Sbjct: 756 LTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLS------SVPSNFIGHLQSLTFNG 809
Query: 295 GNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPL 350
C + + TF + L
Sbjct: 810 MAYIDLCK-----------NGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATL 854
Score = 38.3 bits (88), Expect = 0.006
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 427 ISFSGRR-SYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSL-QGGVL 484
+ F G + P E+ + +++ +GL++YF + L L +GG L
Sbjct: 1 LEFPGAEGQWTRFPKWNAC-CESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRL 59
Query: 485 ELRV 488
+L
Sbjct: 60 QLSF 63
Score = 33.7 bits (76), Expect = 0.19
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 53 FTNFLPPDIEIGQASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIG 112
T F D G+ Y ++ G S + Y + N + + + L+ G
Sbjct: 217 RTGFRGKDCSQGKEEYIATFKG-SEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG 275
Query: 113 QDYQHDAITDHLAVSFIKGYVVLTWNLGSG 142
+ D++ ++ G V L NLGSG
Sbjct: 276 KS------ADYVNLALKNGAVSLVINLGSG 299
Score = 31.7 bits (71), Expect = 0.66
Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 40/128 (31%)
Query: 373 PLTHSYECDCPPGRTGKFCEKDESLSDISFSGRRSYISLPSSELHLIINESLSDISFSGR 432
G CE +L I+F S+ISLP + ISF
Sbjct: 397 LAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWN-----AKKTGSISF--- 448
Query: 433 RSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFG------------HPQKNSMMTLSLQ 480
+ R T+ GL+++ K + +
Sbjct: 449 --------------------DFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEML 488
Query: 481 GGVLELRV 488
G L L +
Sbjct: 489 DGHLYLLL 496
Score = 31.4 bits (70), Expect = 0.83
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 86 NIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVVLTWNLGSGWYL 145
+ L F+F S D L+ Y D + V +KGY+ ++LG+G L
Sbjct: 855 QAYTSMHLFFQFKTTSLD--GLIL-----YNSGDGNDFIVVELVKGYLHYVFDLGNGANL 907
Query: 146 V 146
+
Sbjct: 908 I 908
Score = 30.6 bits (68), Expect = 1.6
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 84 PANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKG-YVVLTWNLGSG 142
N E+ F+ S L+ + + D L + +G + L++++
Sbjct: 15 KWNACCESEMSFQLKTRSAR--GLVLYFDDEGFCD----FLELILTRGGRLQLSFSIFCA 68
Query: 143 W 143
Sbjct: 69 E 69
Score = 30.2 bits (67), Expect = 2.1
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 91 FELKFRFVPNSFDQIALLAFIG--------QDYQHDAITDHLAVSFIKGYVVLTWNLGSG 142
+ F F + L+ F + D A+ + G++ L ++GSG
Sbjct: 444 GSISFDFRTTEPN--GLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSG 501
Score = 29.4 bits (65), Expect = 3.6
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 58 PPDIEIGQASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQH 117
P + G S G ++ L F + A+L +
Sbjct: 1050 PLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE--AVLVRVDS---S 1104
Query: 118 DAITDHLAVSFIKGYVVLTWNLGSG 142
+ D+L + +G + + +N+G+
Sbjct: 1105 SGLGDYLELHIHQGKIGVKFNVGTD 1129
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 78.3 bits (193), Expect = 6e-17
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
QC C + G C + ++C C +G+ G C S N C +S
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLD-NGDCDQFCHEEQNSV 102
Query: 379 ECDCPPGRTGKFCEKD 394
C C G T K
Sbjct: 103 VCSCARGYTLADNGKA 118
Score = 67.9 bits (166), Expect = 2e-13
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C TCS+ A + C++ C C Y
Sbjct: 12 CMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYT 64
Query: 380 CDCPPGRTGKFCEKD 394
C C G GK CE
Sbjct: 65 CTCLEGFEGKNCELF 79
Score = 65.9 bits (161), Expect = 1e-12
Identities = 9/76 (11%), Positives = 13/76 (17%), Gaps = 3/76 (3%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C C + C CA G+ + C +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP--YPCGKQTLERRKRSVAQ 141
Query: 380 CDCPPGRT-GKFCEKD 394
G K
Sbjct: 142 ATSSSGEAPDSITWKP 157
Score = 49.8 bits (119), Expect = 4e-07
Identities = 6/78 (7%), Positives = 14/78 (17%), Gaps = 5/78 (6%)
Query: 313 GQCGTS--QCHNHTCSHGGACMNHGATFSCLCADGWF-GPLCASRYNLCDSTRHNCSFGA 369
G + + C + + G + Y+ D
Sbjct: 113 ADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLD--PTENPF 170
Query: 370 TCVPLTHSYECDCPPGRT 387
+ + T
Sbjct: 171 DLLDFNQTQPERGDNNLT 188
Score = 28.6 bits (64), Expect = 4.1
Identities = 2/54 (3%), Positives = 11/54 (20%), Gaps = 3/54 (5%)
Query: 296 NVGINLYKTRAAEGRGVGQCGTSQ---CHNHTCSHGGACMNHGATFSCLCADGW 346
++ + ++ G + ++ T +
Sbjct: 134 RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 76.8 bits (189), Expect = 2e-16
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 15/143 (10%)
Query: 177 GVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG--YTVRVGKNGQQCW 234
D++ ++I +LQ + D P + + ++ +R + ++
Sbjct: 61 RADYMALAIVDGHLQ----LSYDLGSQPVVLRSTVKVNT-----NRWLRIRAHREHREGS 111
Query: 235 LMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSA 294
L V N VT SP TQL+T L+LGG K +GF GC+ DV +
Sbjct: 112 LQVGNEAPVTGSSPLGATQLDTDGALWLGGL-QKLPVGQALPKAYGTGFVGCLRDVVVG- 169
Query: 295 GNVGINLYKTRAAEGRGVGQCGT 317
+ ++L + A + C T
Sbjct: 170 -HRQLHLLE-DAVTKPELRPCPT 190
Score = 40.2 bits (94), Expect = 5e-04
Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 70 SSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFI 129
+ S + + + + L+ +IG+ + D++A++ +
Sbjct: 16 LNAVIESELTNEIPAEKALQSNHFELSLRTEATQ--GLVLWIGKAAER---ADYMALAIV 70
Query: 130 KGYVVLTWNLGSGWYLVYFEHTY 152
G++ L+++LGS ++
Sbjct: 71 DGHLQLSYDLGSQPVVLRSTVKV 93
Score = 39.8 bits (93), Expect = 7e-04
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 423 SLSDISFSGRRSYISLPSSELHLHEAC------------IDLEIRPTKDKGLLMYFGHPQ 470
+L ++F GR +YI ++ + +L +R +GL+++ G
Sbjct: 1 ALETLAFDGR-TYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAA 59
Query: 471 KNS-MMTLSLQGGVLELRV 488
+ + M L++ G L+L
Sbjct: 60 ERADYMALAIVDGHLQLSY 78
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 76.8 bits (189), Expect = 2e-16
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG--YTVRVGKNGQQCWLM 236
D++ ++I ++ M D P + + I+ ++ + ++ L
Sbjct: 76 DYIALAIVDGFV----QMMYDLGSKPVVLRSTVPINT-----NHWTHIKAYRVQREGSLQ 126
Query: 237 VDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGN 296
V N +T SP TQL+T L+LGG + +GF GCI DV +
Sbjct: 127 VGNEAPITGSSPLGATQLDTDGALWLGGM-ERLSVAHKLPKAYSTGFIGCIRDVIVD--R 183
Query: 297 VGINLYKTRAAEGRGVGQCGT 317
++L + A + C
Sbjct: 184 QELHLVE-DALNNPTILHCSA 203
Score = 41.0 bits (96), Expect = 3e-04
Identities = 11/79 (13%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 66 ASYSSSMSGLSSFSAYVIPANIHHC--FELKFRFVPNSFDQIALLAFIGQDYQHDAITDH 123
Y ++++ Y + + + L+ + G+ + +D+
Sbjct: 23 MEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEA--TQGLILWSGKGLER---SDY 77
Query: 124 LAVSFIKGYVVLTWNLGSG 142
+A++ + G+V + ++LGS
Sbjct: 78 IALAIVDGFVQMMYDLGSK 96
Score = 36.8 bits (85), Expect = 0.007
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 400 ISFSGRRSYISLPSSELHLIINESLSDISFSGRRSYISLPSSELHLHEACIDLEIRPTKD 459
I+F GR +Y+ + S Y + PS + L +L I+
Sbjct: 15 IAFDGR-TYMEY----------HNAVTKSPDAL-DYPAEPSEK-ALQSNHFELSIKTEAT 61
Query: 460 KGLLMYFGHPQKNS-MMTLSLQGGVLELRV 488
+GL+++ G + S + L++ G +++
Sbjct: 62 QGLILWSGKGLERSDYIALAIVDGFVQMMY 91
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 76.1 bits (187), Expect = 3e-16
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG--YTVRVGKNGQQCWLM 236
DF+ + + +L G R+ + + I+ G + V + G++ +
Sbjct: 62 DFISLGLQDGHLV----FRYQLGSGEARLVSEDPIND-----GEWHRVTALREGRRGSIQ 112
Query: 237 VDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGN 296
VD V+ +SPG +N K +Y+GG + + L SG +GC+ ++ L +
Sbjct: 113 VDGEELVSGRSPGPNVAVNAKGSVYIGGA--PDVATLTG-GRFSSGITGCVKNLVLHSAR 169
Query: 297 VGINLYKTRAAEGRGVGQCGTSQC 320
G + + R T C
Sbjct: 170 PGAPPPQPLDLQHRAQAGANTRPC 193
Score = 40.3 bits (94), Expect = 6e-04
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 64 GQASYSSSMSGLS--SFSAYVIPANIHHC-FELKFRFVPNSFDQIALLAFIGQDYQHDA- 119
Y + +F +V ++ ++ ++ LL + G +
Sbjct: 2 APGQYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTAS--GLLLWQGVEVGEAGQ 59
Query: 120 ITDHLAVSFIKGYVVLTWNLGSG 142
D +++ G++V + LGSG
Sbjct: 60 GKDFISLGLQDGHLVFRYQLGSG 82
Score = 39.5 bits (92), Expect = 0.001
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 427 ISFSGRRSYISLP----SSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSM-----MTL 477
F +++ P S L I+LE+R + GLL++ G + ++L
Sbjct: 8 AYFHDD-GFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISL 66
Query: 478 SLQGGVLELRV 488
LQ G L R
Sbjct: 67 GLQDGHLVFRY 77
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 74.4 bits (183), Expect = 4e-16
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 320 CHNHTCSHGGAC-------MNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCV 372
C + C +GG C + + C C G+ G C N C+ C G C
Sbjct: 55 CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEV--EPCKNGGICT 112
Query: 373 PLTHSYECDCPPGRTGKFCEKD 394
L +Y C+CP G+ C+
Sbjct: 113 DLVANYSCECPGEFMGRNCQYK 134
Score = 65.5 bits (160), Expect = 5e-13
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 320 CHNHTCSHGGACMNH--GATFSCLCADGWFGPLCASRYNLCDSTRHN----------CSF 367
C + C +GG C+ +FSC C DG+ P C+S + C
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 368 GATCVPLTH-------SYECDCPPGRTGKFCEKD 394
G TC Y C CP G G C+ +
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHN 96
Score = 46.2 bits (110), Expect = 3e-06
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRH 363
C C +GG C + A +SC C + G C + H
Sbjct: 100 CEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 72.8 bits (179), Expect = 2e-15
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
QC + C +GG C + ++ C C G+ G C +
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIK--NGRCKQFCKTGADSKV 107
Query: 379 ECDCPPGRTGKFCEKD 394
C C G +K
Sbjct: 108 LCSCTTGYRLAPDQKS 123
Score = 60.8 bits (148), Expect = 2e-11
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C CS A + C+ + C G C +SYE
Sbjct: 18 CIEEKCSFEEAR-----EVFENTEKTNEFWKQYVDGDQCEP--NPCLNGGLCKDDINSYE 70
Query: 380 CDCPPGRTGKFCEKD 394
C C G GK CE D
Sbjct: 71 CWCQVGFEGKNCELD 85
Score = 42.3 bits (100), Expect = 5e-05
Identities = 4/52 (7%), Positives = 8/52 (15%), Gaps = 2/52 (3%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATC 371
+ + C C G+ C +
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP--FPCGRVSVS 138
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 71.7 bits (176), Expect = 2e-15
Identities = 17/75 (22%), Positives = 24/75 (32%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C G C++ +FSC C GW G C + + + N C+
Sbjct: 17 PCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR 76
Query: 380 CDCPPGRTGKFCEKD 394
C C PG
Sbjct: 77 CSCAPGYKLGDDLLQ 91
Score = 37.0 bits (86), Expect = 0.002
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDS 360
C C+ C CA G+ + +
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 68.5 bits (168), Expect = 4e-14
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTR-HNCSFGATCVPLTHS 377
QC + C +GG+C + ++ C C + G C + + N C T +
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGT 108
Query: 378 -YECDCPPGRTGKFCEKD 394
C C G +
Sbjct: 109 KRSCRCHEGYSLLADGVS 126
Score = 63.1 bits (154), Expect = 3e-12
Identities = 19/75 (25%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C CS A F + S + C S C G +C SY
Sbjct: 17 CKEEQCSFEEAR----EIFKD-AERTKLFWISYSDGDQCAS--SPCQNGGSCKDQLQSYI 69
Query: 380 CDCPPGRTGKFCEKD 394
C C P G+ CE
Sbjct: 70 CFCLPAFEGRNCETH 84
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 5/58 (8%)
Query: 315 CGTSQCHNHTCSHGGACMNH-GATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATC 371
N C C +H G SC C +G+ + C
Sbjct: 88 QLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE--YPCGKIPIL 141
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 68.7 bits (168), Expect = 8e-14
Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVD 238
D++ +++ + + ++ G + + V+V +N +Q + VD
Sbjct: 53 DYVNLALKNGAVS----LVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVD 108
Query: 239 NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGNVG 298
+ T + T L + Y+GG + + LP P+ + F GC+ +V +V
Sbjct: 109 GILTTTGYTQEDYTMLGSDDFFYVGGS--PSTADLPG-SPVSNNFMGCLKEVVYKNNDVR 165
Query: 299 INLYKTRAAEGRGVGQCGTSQCHNH 323
+ L + + + G + H
Sbjct: 166 LELSR--------LAKQGDPKMKIH 182
Score = 42.5 bits (100), Expect = 7e-05
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 67 SYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAV 126
Y ++ G S + Y + N + + + L+ G+ D++ +
Sbjct: 5 EYIATFKG-SEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS------ADYVNL 57
Query: 127 SFIKGYVVLTWNLGSG 142
+ G V L NLGSG
Sbjct: 58 ALKNGAVSLVINLGSG 73
Score = 42.1 bits (99), Expect = 9e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 427 ISFSGRRSYISLPSSE--LHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVL 484
+F G Y S+ + I L + + GL+++ G + + L+L+ G +
Sbjct: 8 ATFKGS-EYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG--KSADYVNLALKNGAV 64
Query: 485 ELRVLMLGDRPKT 497
L + LG
Sbjct: 65 SLVI-NLGSGAFE 76
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 67.0 bits (164), Expect = 3e-13
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 318 SQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTH- 376
+C H G C + CLC W G LC N C + + C G TC
Sbjct: 97 DKCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQ-PCLNGGTCSNTGPD 152
Query: 377 SYECDCPPGRTGKFCE 392
Y+C CP G +G CE
Sbjct: 153 KYQCSCPEGYSGPNCE 168
Score = 65.1 bits (159), Expect = 1e-12
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
+C + C G+C G C C GW G C + C H C
Sbjct: 62 ECNRAICRQGCSPKHGSCKLPG---DCRCQYGWQGLYC----DKCIP--HPGCVHGICN- 111
Query: 374 LTHSYECDCPPGRTGKFCEKD 394
++C C G+ C+KD
Sbjct: 112 --EPWQCLCETNWGGQLCDKD 130
Score = 62.4 bits (152), Expect = 1e-11
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
+H H G+ + C D ++G C C + FG +
Sbjct: 2 RGSHHHHHHGSIEG---RSAVTCDDYYYGFGCN---KFCRP--RDDFFGHYAC--DQNGN 51
Query: 380 CDCPPGRTGKFCEKD 394
C G G C +
Sbjct: 52 KTCMEGWMGPECNRA 66
Score = 57.0 bits (138), Expect = 8e-10
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C G + + C +GW GP C +C +
Sbjct: 34 CRPRDDFFGHYACDQ--NGNKTCMEGWMGPECNRAICRQGC----SPKHGSCKL---PGD 84
Query: 380 CDCPPGRTGKFCEKDES 396
C C G G +C+K
Sbjct: 85 CRCQYGWQGLYCDKCIP 101
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 68.3 bits (167), Expect = 8e-13
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
C + C C +GG C+ C+C G++G C C + C G TC
Sbjct: 178 CEKALCTPR-CMNGGLCVT---PGFCICPPGFYGVNCD--KANCST---TCFNGGTCF-- 226
Query: 375 THSYECDCPPGRTGKFCEKDESLSD 399
+ +C CPPG G+ CE +
Sbjct: 227 -YPGKCICPPGLEGEQCEISKCPQP 250
Score = 68.0 bits (166), Expect = 1e-12
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
C + C TC +GG C C+C G G C + C C G C+
Sbjct: 209 NCDKANCST-TCFNGGTCFY---PGKCICPPGLEGEQC--EISKCPQ---PCRNGGKCI- 258
Query: 374 LTHSYECDCPPGRTGKFCEKD 394
+C C G G C K
Sbjct: 259 --GKSKCKCSKGYQGDLCSKP 277
Score = 66.4 bits (162), Expect = 4e-12
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
QC S+C C +GG C+ C C+ G+ G LC+ +C+ C TC
Sbjct: 241 QCEISKCPQ-PCRNGGKCIG---KSKCKCSKGYQGDLCSK--PVCEP---GCGAHGTCHE 291
Query: 374 LTHSYECDCPPGRTGKFCEKD 394
+C C G G+ C K
Sbjct: 292 ---PNKCQCQEGWHGRHCNKR 309
Score = 62.2 bits (151), Expect = 9e-11
Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 9/91 (9%)
Query: 305 RAAEGRGVGQC-GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRH 363
+A+ + C G + G T + F C C
Sbjct: 99 KASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQ--AECPG--- 153
Query: 364 NCSFGATCVPLTHSYECDCPPGRTGKFCEKD 394
C G C C+CP G G CEK
Sbjct: 154 GCRNGGFCN---ERRICECPDGFHGPHCEKA 181
Score = 43.7 bits (103), Expect = 9e-05
Identities = 13/51 (25%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNC 365
C C C G C C C +GW G C RY +
Sbjct: 274 CSKPVCEPG-CGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHH 320
Score = 36.4 bits (84), Expect = 0.017
Identities = 4/38 (10%), Positives = 8/38 (21%)
Query: 358 CDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKDE 395
D ++ K C++ E
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAE 150
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 65.9 bits (160), Expect = 9e-12
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 313 GQCGTSQCHNH-TCSHGGACMNHGATFSCLCADGWFGPLC-----ASRYNLCDSTRHNCS 366
G+ +C C C + C CA GW G C Y R +C+
Sbjct: 239 GRTCKERCSGQEGCKSYVFC--LPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCN 296
Query: 367 FGATCVPLTHSYECDCPPGRTGKFCEKD 394
G C C C PG G CE++
Sbjct: 297 NGEMCD---RFQGCLCSPGWQGLQCERE 321
Score = 58.9 bits (142), Expect = 1e-09
Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLC-----ASRYNLCDSTR----HNCSFGA 369
C + G C H T C+C G+ G C + R C
Sbjct: 199 NHLCTACMNNGVC--HEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256
Query: 370 TCVPLTHSYECDCPPGRTGKFCEKD 394
C+P Y C C G G C +
Sbjct: 257 FCLP--DPYGCSCATGWKGLQCNEA 279
Score = 57.4 bits (138), Expect = 5e-09
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGAT---FSCLCADGWFGPLCASRYNLCDSTRHNCSFGAT 370
++ + G + A C +GP C +LC + C
Sbjct: 158 HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN---HLCTA----CMNNGV 210
Query: 371 CVPLTHSYECDCPPGRTGKFCEKD 394
C T EC CPPG G+ CEK
Sbjct: 211 CHEDT--GECICPPGFMGRTCEKA 232
Score = 54.3 bits (130), Expect = 5e-08
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCV 372
G G +C++G C CLC+ GW G C R + T
Sbjct: 283 GFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQC-EREGIPRMTPKIVDLPDHIE 338
Query: 373 PLTHSYECDCP-PGRTGKFCE 392
+ + C G E
Sbjct: 339 VNSGKFNPICKASGWPLPTNE 359
Score = 43.9 bits (103), Expect = 9e-05
Identities = 8/80 (10%), Positives = 16/80 (20%), Gaps = 4/80 (5%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLC-ADGWFGPLCASRYNLCDSTRHNCSFGATCV 372
+ G + + F+ +C A GW P +
Sbjct: 320 REGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEE---MTLVKPDGTVLHPKDF 376
Query: 373 PLTHSYECDCPPGRTGKFCE 392
T + +
Sbjct: 377 NHTDHFSVAIFTIHRILPPD 396
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 60.9 bits (148), Expect = 2e-10
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
C + C H G+C + ++C C+ G+ G C N C C+P SY
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC-HPERTDGCQHFCLPGQESY 65
Query: 379 ECDCPPGRTGKFCEKDESLSDISFSGRRSY 408
C C G K D G +
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 28.1 bits (63), Expect = 7.4
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 314 QCGTSQCH---NHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTR 362
+ ++CH C H C+ +++C CA G+ + D
Sbjct: 40 ELAKNECHPERTDGCQHF--CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 60.8 bits (147), Expect = 3e-10
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
TV+ ++ ++ VD + + G+ T L+ + LYLGG + + +
Sbjct: 107 TVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGL--PSHYRARNIGTITHS 164
Query: 283 FSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSC 340
CI ++ ++ G L K R V +C G +
Sbjct: 165 IPACIGEIMVN----GQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKV 218
Score = 56.1 bits (135), Expect = 1e-08
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
T++ K+ + L VD T +T +Y+GG+ + I + L +
Sbjct: 287 TLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA---HIKQNSLSSRAS 343
Query: 283 FSGCIFDVELSAGNVGINLYKTRAAEGRGV 312
F GC+ ++ LS G+ +L +RA + +GV
Sbjct: 344 FRGCVRNLRLSRGSQVQSLDLSRAFDLQGV 373
Score = 43.0 bits (101), Expect = 2e-04
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 428 SFSGRRSYISLPSSELHLHEAC-IDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLEL 486
S S++ LP + + + + L IR GL+ Y H + TL LQ G L
Sbjct: 25 GLSQN-SHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHF 83
Query: 487 RVLMLGDRPKT 497
LG
Sbjct: 84 M-FDLGKGRTK 93
Score = 36.1 bits (83), Expect = 0.023
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 57 LPPDIEIGQASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQ 116
+ ++ +S S + +++ +++ + L+ ++ Q
Sbjct: 11 VDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASS--GLIYYVAHQNQ 68
Query: 117 HDAITDHLAVSFIKGYVVLTWNLGSGWYLVYFEHTY 152
D+ + +G + ++LG G V
Sbjct: 69 ----MDYATLQLQEGRLHFMFDLGKGRTKVSHPALL 100
Score = 33.4 bits (76), Expect = 0.15
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 429 FSGRRSYISLPSSELHLHEAC-IDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLELR 487
F Y +L + I LE R T G+L+ K + L + G +
Sbjct: 202 FFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISS-AKVDAIGLEIVDGKVLFH 260
Query: 488 V 488
V
Sbjct: 261 V 261
Score = 29.6 bits (66), Expect = 2.8
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 76 SSFSAYVIPA-NIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVV 134
S ++A V + ++ F S + + L A D + + + G V+
Sbjct: 206 SGYAALVKEGYKVRLDLQITLEFRTTSKNGVLL-------GISSAKVDAIGLEIVDGKVL 258
Query: 135 LTWNLGSG 142
N G+G
Sbjct: 259 FHVNNGAG 266
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 56.0 bits (135), Expect = 3e-10
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 331 CMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTH--SYECDCPPGRTG 388
+ C C G + C R C G TC + + C CP G G
Sbjct: 25 VLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEGFAG 81
Query: 389 KFCEKD 394
K CE D
Sbjct: 82 KSCEID 87
Score = 35.9 bits (83), Expect = 0.004
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 320 CHNHTCSHGGACMNHGAT--FSCLCADGWFGPLC 351
C C +GG C F C C +G+ G C
Sbjct: 51 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Score = 30.5 bits (69), Expect = 0.30
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 10/56 (17%)
Query: 337 TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCE 392
++ +C D + + + S+ + C C GR
Sbjct: 1 SYQVICRDEKTQMIY----------QQHQSWLRPVLRSNRVEYCWCNSGRAQCHSV 46
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 56.8 bits (137), Expect = 1e-09
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 23/150 (15%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG-YTVRVGKNGQQCWLMV 237
D L + + ++ + V+ +GP +F ++ +TVRV + G+ L V
Sbjct: 54 DTLRLELDAGRVK----LTVNLGKGPETLFAGYNLN----DNEWHTVRVVRRGKSLKLTV 105
Query: 238 DNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGNV 297
D+ +T + G T+L + G + + + S F G + + +
Sbjct: 106 DDQQAMTGQMAGDHTRLEFHN-IETGIITERR-----YLSSVPSNFIGHLQSLTFNGMAY 159
Query: 298 GINLYKTRAAEGRGVGQCGTSQCHNHTCSH 327
I+L + + C +
Sbjct: 160 -IDL-----CKNGDIDYC--ELNARFGFRN 181
Score = 42.5 bits (100), Expect = 8e-05
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 65 QASYSSSMSGLSSFSAYVIPANIH-HCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDH 123
+ + S G S F +P +H ++ RF +L D
Sbjct: 3 REATVLSYDG-SMFMKIQLPVVMHTEAEDVSLRFRSQRAY--GILMATTSRDS----ADT 55
Query: 124 LAVSFIKGYVVLTWNLGSGWYLVYFEHTY 152
L + G V LT NLG G ++ +
Sbjct: 56 LRLELDAGRVKLTVNLGKGPETLFAGYNL 84
Score = 41.8 bits (98), Expect = 1e-04
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 427 ISFSGRRSYISLP-SSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLE 485
+S+ G ++ + +H + L R + G+LM + L L G ++
Sbjct: 8 LSYDGS-MFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVK 66
Query: 486 LRVLMLGDRPKT 497
L + LG P+T
Sbjct: 67 LT-VNLGKGPET 77
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 59.7 bits (144), Expect = 1e-09
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 314 QCGTSQCHNHTCSHGGACMNHG----ATFSCLCADGWFGPLC---ASRYNLCDSTRHNCS 366
+C T C +G C G C C G+ G C + + R CS
Sbjct: 513 ECDTINCE---RYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECS 569
Query: 367 FGATCVPLTHSYECDCPPGRTGKFCEK 393
C C+C G C++
Sbjct: 570 GRGRCR----CNVCECHSGYQLPLCQE 592
Score = 55.1 bits (132), Expect = 3e-08
Identities = 22/102 (21%), Positives = 26/102 (25%), Gaps = 26/102 (25%)
Query: 309 GRGVGQCGTSQCH---------------NHTCSHGGACMNHGA--TFSCLCADGWFGPLC 351
GRG+ CG +CH C G C C G+ PLC
Sbjct: 531 GRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLC 590
Query: 352 ASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
C C +C G GK C
Sbjct: 591 ----QECPGCPSPCGKYISCA-----ECLKFEKGPFGKNCSA 623
Score = 51.6 bits (123), Expect = 4e-07
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 9/78 (11%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
C C +C G FG C S +N G TC
Sbjct: 590 CQECPGCPSPCGKYISCAE-----CLKFEKGPFGKNC-SAACPGLQLSNNPVKGRTC--- 640
Query: 375 THSYECDCPPGRTGKFCE 392
C T + +
Sbjct: 641 KERDSEGCWVAYTLEQQD 658
Score = 48.9 bits (116), Expect = 3e-06
Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 17/94 (18%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
+C C G C C G+ G C + S S
Sbjct: 426 RCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 481
Query: 374 LTHSY-------ECDCPPGRT------GKFCEKD 394
+ S +C C G++CE D
Sbjct: 482 IICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECD 515
Score = 45.9 bits (108), Expect = 3e-05
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 308 EGRGVGQCGTSQCHNHT--CSHGGACMNHGATFSCLCADGWFGPLCAS-RYNLCDSTRHN 364
G+ + N++ CS G C+ G CLC +Y CD+
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVC-G---QCLCHTSDVPGKLIYGQYCECDTINCE 520
Query: 365 CSFGATCVPLTH----SYECDCPPGRTGKFCEKDES 396
G C +C C PG G C+ + +
Sbjct: 521 RYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERT 556
Score = 43.9 bits (103), Expect = 1e-04
Identities = 13/84 (15%), Positives = 19/84 (22%), Gaps = 6/84 (7%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCD-STRHNCSFGATCV 372
Q + + A G+ + C+ R + C
Sbjct: 382 QINVPITFQVKVTATECIQEQS---FVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCH 438
Query: 373 PLTH--SYECDCPPGRTGKFCEKD 394
C C G GK CE
Sbjct: 439 GKGFLECGICRCDTGYIGKNCECQ 462
Score = 34.7 bits (79), Expect = 0.068
Identities = 7/66 (10%), Positives = 12/66 (18%), Gaps = 18/66 (27%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
++ G C S C + G +
Sbjct: 629 QLSNNPVKGRTCKERD---SEGCWVAYTLEQQD---------------GMDRYLIYVDES 670
Query: 380 CDCPPG 385
+C G
Sbjct: 671 RECVAG 676
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 1e-08
Identities = 42/288 (14%), Positives = 82/288 (28%), Gaps = 82/288 (28%)
Query: 7 QSCPE---LTNPDNIKILGRHRQEENDRIVNFQHYFDTNQPINQLLSII--FTNFLPPDI 61
Q P TNP + I+ ++ N++H ++L +II N L P
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN-----CDKLTTIIESSLNVLEPAE 370
Query: 62 EIGQASYSSSMSGLSSFSAYV-IPANIHHCF--ELKFRFVPNSFDQIALLAFIGQDYQHD 118
+ + LS F IP + ++ V +++ + + + +
Sbjct: 371 Y--RKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 119 AITDH---------------LAVSFIKGYVVL----TWNLGSG-------WYLVY----- 147
I+ L S + Y + + +L ++ +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 148 --------FEHTYL---FILSRLRSAQDTRLCCLPLHLILGVDFLCMSIYTSYLQ---PT 193
F +L F+ ++R + L Y Y+ P
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QL---KFYKPYICDNDPK 540
Query: 194 GHMFVDTYRGPRRIFTPNTISAKSKRGGYT--VRVGKNGQQCWLMVDN 239
V+ F P I YT +R+ LM ++
Sbjct: 541 YERLVNAILD----FLPK-IEENLICSKYTDLLRIA-------LMAED 576
Score = 32.1 bits (72), Expect = 0.57
Identities = 47/335 (14%), Positives = 96/335 (28%), Gaps = 98/335 (29%)
Query: 11 ELTNPDNIKILGRHRQEENDRIVNFQHYFDTNQPI---NQLLSIIFTNFLPPDIEIGQAS 67
E+ + ++ + E+ + + Y + + NQ+ + + L P +++ QA
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 68 YSSS---------M--SGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQ 116
+ SG + + V L ++ +I L
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVC---------LSYKVQCKMDFKIFWLNL-KNCNS 194
Query: 117 HDAITDHLAVSFIKGYVVLTWNLGSGWYLVYFEHTYLFILSRLRSAQD--TRLCCLPLH- 173
+ + + L K + N S +H+ L R+ S Q RL +
Sbjct: 195 PETVLEMLQ----KLLYQIDPNWTSR-----SDHSSNIKL-RIHSIQAELRRLLKSKPYE 244
Query: 174 ---LIL----------GVDFLCMSIYTS-------YLQP--TGHMFVDTYRGPRRIFTPN 211
L+L + C + T+ +L T H+ +D + TP+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPD 301
Query: 212 ---TISAK------------SKRG--------GYTVRVGKNGQQCWLMV--DNMGNVTSK 246
++ K ++R G W V D + +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 247 SPGRLTQLNTKPM--LYLGGHFSKNFSILPHDLPL 279
S L L ++ S+ P +
Sbjct: 362 S---LNVLEPAEYRKMF------DRLSVFPPSAHI 387
Score = 31.7 bits (71), Expect = 0.65
Identities = 45/333 (13%), Positives = 90/333 (27%), Gaps = 111/333 (33%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPR-RIFTPNTISAKSKRGGYTVRVGKNGQQCWLMV 237
FL I T QP+ Y R R++ N + AK Y V +
Sbjct: 92 KFLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAK-----YNVSRLQ-------PY 137
Query: 238 DNMGNVTSKSPGRLTQLNTKPMLYLGGH----FSKNFSILP----HDLPLHSGFSGCIFD 289
+ L +L +P + K + + + IF
Sbjct: 138 LKLRQA-------LLEL--RPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIF- 185
Query: 290 VELSAGNVGINLYKTRAAEGRGVGQCGTSQ---------CHNHTCSHGGACMNHGAT-FS 339
+N + C + + + + +
Sbjct: 186 --------WLN-----------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 340 CLCADGWFGPLCASR-YNLC----D---STRHNCSFGATC-VPLTHSYECDCPPGRTGKF 390
L S+ Y C + + +F +C + LT T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-----------T--- 272
Query: 391 CEKDESLSDISFSGRRSYISLPSSELHLIINESLSDISFSGRRSYISLPSSELHLHEACI 450
+ + ++D + ++ISL + L +E S + Y+ +L E
Sbjct: 273 --RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLP-REVLT 324
Query: 451 DLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGV 483
+P++ S++ S++ G+
Sbjct: 325 ----------------TNPRRLSIIAESIRDGL 341
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 54.2 bits (130), Expect = 4e-08
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
+++ + Q+ L VD+ + + SP + L+ +LY+GG P+
Sbjct: 121 KIKIVRVKQEGILYVDD-ASSQTISPKKADILDVVGILYVGGL--PINYTTRRIGPVTYS 177
Query: 283 FSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFS 339
GC+ ++ + + + VG C + + T G F
Sbjct: 178 LDGCVRNLHME----QAPVDLDQPTSSFHVGTC-FANAESGTYFDGTGFAKAVGGFK 229
Score = 53.1 bits (127), Expect = 9e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
V K + L+VD T +T +++GG + L +
Sbjct: 299 KVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG---GLNQFGLTTNIR 355
Query: 283 FSGCIFDVELSAGNVG-INLYKTRAAEGRGV--GQCGTS 318
F GCI ++L+ G + + +A E RGV C T+
Sbjct: 356 FRGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVSCPTT 394
Score = 43.1 bits (101), Expect = 1e-04
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 428 SFSGRR-SYISLPSSELHL-HEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLE 485
F R S+I++ + + + I+LE+R + GLL Y T+ L+ G
Sbjct: 37 QFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPY 96
Query: 486 LRVLMLGDRPKT 497
LG +
Sbjct: 97 FS-YDLGSGDTS 107
Score = 36.1 bits (83), Expect = 0.024
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 397 LSDISFSGRRSYISLPSSELHL-IINESLSDISFSGRRSYISLPSSELHLHEACIDLEIR 455
+ ++ + P+S H+ + ++ + + ++ E R
Sbjct: 182 VRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTGFAKAVGGFKVGLDLLVEFEFR 241
Query: 456 PTKDKGLLMYFGHPQKNSMMTLSLQGGVLELRV 488
T+ G+L+ QK M + + L V
Sbjct: 242 TTRPTGVLLGVSS-QKMDGMGIEMIDEKLMFHV 273
Score = 33.4 bits (76), Expect = 0.16
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 76 SSFSAYVIP-ANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVV 134
+S A + + ++ + LL ++ + D V G+
Sbjct: 43 NSHIAIAFDDTKVKNRLTIELEVRTEAES--GLLFYMARINH----ADFATVQLRNGFPY 96
Query: 135 LTWNLGSGWYLVYFEHTY 152
+++LGSG
Sbjct: 97 FSYDLGSGDTSTMIPTKI 114
Score = 30.4 bits (68), Expect = 1.4
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 76 SSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVVL 135
+ F+ V + ++F F + L D + + I ++
Sbjct: 219 TGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLL-------GVSSQKMDGMGIEMIDEKLMF 271
Query: 136 TWNLGSG 142
+ G+G
Sbjct: 272 HVDNGAG 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 87/484 (17%), Positives = 139/484 (28%), Gaps = 181/484 (37%)
Query: 77 SFSAYVIPANIH-HCFELKFRF---VPNSFDQIALLAFIGQDYQHDAITD--HLAVSFIK 130
+P +L+ +F +P + A D T L F+
Sbjct: 19 VLL---VPTASFFIASQLQEQFNKILPEPTEGFA---------ADDEPTTPAELVGKFL- 65
Query: 131 GYVV-LTWNLGSGWY-------LVYFEHTYLF------ILSRLRSAQDTRLCCLPLHLIL 176
GYV L G + L FE+ YL + ++L DT L + ++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL--VKTKELI 123
Query: 177 GVDFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISA--KSKRGG----YTVRVGKNG 230
+Y+ +R F + SA ++ G + G G
Sbjct: 124 ----------KNYITARIMA--------KRPFDKKSNSALFRAVGEGNAQLVAI-FG--G 162
Query: 231 Q---QCWL--MVD-------NMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSIL----- 273
Q + + D +G++ S L++L L F++ +IL
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT-LDAEKVFTQGLNILEWLEN 221
Query: 274 PHDLPLHSGFSGCIFDVE-LSAGNVGINLYKTRAAEGRGVGQCGTSQCHNH---TCSHGG 329
P + P D + L + + L GV Q H T G
Sbjct: 222 PSNTP----------DKDYLLSIPISCPLI--------GVIQLA------HYVVTAKLLG 257
Query: 330 ACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFG---ATCVPLTHSYECDCPPGR 386
G S L +T S G A + T S+E
Sbjct: 258 --FTPGELRSYLKG----------------AT--GHSQGLVTAVAIAETDSWE------- 290
Query: 387 TGKFCEKDESLSDISFS-GRRSYISLPSSELHLIINE--------------SLSDISFSG 431
F + F G R Y + P++ L I E S+S+++
Sbjct: 291 --SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 432 RRSYI-----SLPSSELHLHEACIDLEIRPTKDKGLLMYF---GHPQKNSMMTLSLQGGV 483
+ Y+ LP+ + + I L G PQ SL G
Sbjct: 349 VQDYVNKTNSHLPAGK-QVE---ISLVNGAKN-------LVVSGPPQ-------SLYGLN 390
Query: 484 LELR 487
L LR
Sbjct: 391 LTLR 394
Score = 46.2 bits (109), Expect = 3e-05
Identities = 69/416 (16%), Positives = 113/416 (27%), Gaps = 129/416 (31%)
Query: 2 YAHHLQSCPELTNPDNIKILGRHRQEENDRIVNFQHYFDTNQPINQLLSIIFTNFLPPDI 61
Y + + + + L + D F + I + L + P
Sbjct: 180 YHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQGLN----ILEWLEN--PSNTPDKD 229
Query: 62 EIGQASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAIT 121
+ S + G+ + YV+ A + + +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLL-------------------------GFTPGELR 264
Query: 122 DHL--AVSFIKGYVV-------LTWNLGSGWY-LVYFEHTYLFILSRLRSAQDTRLCCLP 171
+L A +G V +W ++ V T LF + +R + LP
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSW---ESFFVSVRKAITVLFFIG-VRCYEAYPNTSLP 320
Query: 172 LHLILGVDFLCMSIYTSYLQPTGHMF-VDTYRGPRR------IFTPNTISAKSKRGGYTV 224
++ D S+ + P+ M + + + N+ K+ V
Sbjct: 321 PSIL--ED----SLENNEGVPS-PMLSI---SNLTQEQVQDYVNKTNSHLPAGKQ----V 366
Query: 225 RVG-KNGQQCWLMVDNM---GNVTS-----------KSPGRLTQLNT-----KPMLYLGG 264
+ NG N+ G S K+P L Q K
Sbjct: 367 EISLVNGA------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL------ 414
Query: 265 HFSKNFSILPHDLPLHSGF----SGCIF------DVELSAGNVGINLYKTRAAEGRGVGQ 314
FS F LP P HS S I +V +A ++ I +Y T +G +
Sbjct: 415 KFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF--DGSDLRV 470
Query: 315 CGTSQCHNHT---CS---HGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHN 364
S AT L FGP AS L T N
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKAT-HILD----FGPGGASG--LGVLTHRN 519
Score = 37.0 bits (85), Expect = 0.019
Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 71/141 (50%)
Query: 396 SLSDIS----------FSGRRS------YISL----------PSSELHLIINESLSDISF 429
S+ DI F G + Y ++ + ++ INE + +F
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 430 SGRRSYISLPSSELHLHE-----------ACI-DLEIRPTKDKGLL---MYF-GHPQKNS 473
L + A DL K KGL+ F GH
Sbjct: 1720 RS-------EKGLLSATQFTQPALTLMEKAAFEDL-----KSKGLIPADATFAGH----- 1762
Query: 474 MMTLSL--------QGGVLEL 486
SL V+ +
Sbjct: 1763 ----SLGEYAALASLADVMSI 1779
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 52.8 bits (126), Expect = 2e-07
Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 307 AEGRGVGQCGTSQCHNHT--CSHGGACMNHGATFSCLCADGWFGPLCA-----SRYNLCD 359
E Q CS G C+ C+C FG + ++
Sbjct: 475 EEDYRPSQQDECSPREGQPVCSQRGECL----CGQCVCHSSDFGKITGKYCECDDFSCVR 530
Query: 360 STRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKDESLSDI 400
CS C +C C TG +C
Sbjct: 531 YKGEMCSGHGQCS----CGDCLCDSDWTGYYCNCTTRTDTC 567
Score = 52.4 bits (125), Expect = 2e-07
Identities = 24/89 (26%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGA--TFSCLCADGWFGPLC---ASRYNLCDSTRHNCSFG 368
+C C G C HG CLC W G C S CS
Sbjct: 522 ECDDFSCV---RYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGR 578
Query: 369 ATCVPLTHSYECDC-PPGRTGKFCEKDES 396
C C C PG G CEK +
Sbjct: 579 GKCE----CGSCVCIQPGSYGDTCEKCPT 603
Score = 51.2 bits (122), Expect = 5e-07
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 19/89 (21%)
Query: 316 GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLT 375
++ ++H C++G G C C GW G C C + S C P
Sbjct: 439 AQAEPNSHRCNNGNGTFECGV---CRCGPGWLGSQCE-----CSEEDYRPSQQDECSPRE 490
Query: 376 HSY-----------ECDCPPGRTGKFCEK 393
+C C GK K
Sbjct: 491 GQPVCSQRGECLCGQCVCHSSDFGKITGK 519
Score = 42.8 bits (100), Expect = 2e-04
Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 23/97 (23%)
Query: 309 GRGVGQCGTSQCH---------NHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCD 359
GRG +CG+ C + AC C G L C+
Sbjct: 577 GRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC--VECKKFDRGALHDENT--CN 632
Query: 360 STRHNCSFGATCVPLTHSYECDCPPGRTGKFC-EKDE 395
C V + G+ C K+E
Sbjct: 633 R---YCRDEIESV------KELKDTGKDAVNCTYKNE 660
Score = 38.1 bits (88), Expect = 0.007
Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 5/89 (5%)
Query: 309 GRGVGQCGTSQCHNHTCSHGGACMNHGATFS-CLCADGWFGPLCASRYNLCDSTRHNCSF 367
G V ++ + F L F CA + ++ +
Sbjct: 392 GDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNG 451
Query: 368 GATCVPLTHSYECDCPPGRTGKFCEKDES 396
T C C PG G CE E
Sbjct: 452 NGTFEC----GVCRCGPGWLGSQCECSEE 476
Score = 37.0 bits (85), Expect = 0.013
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 15/75 (20%)
Query: 318 SQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSF-------GAT 370
+ +TC+ C + + L G C + N D C +
Sbjct: 624 ALHDENTCN--RYCRDEIESVKELKDTGKDAVNC-TYKNEDD-----CVVRFQYYEDSSG 675
Query: 371 CVPLTHSYECDCPPG 385
L E +C G
Sbjct: 676 KSILYVVEEPECCKG 690
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 48.7 bits (116), Expect = 3e-07
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNL-----------CDSTRHNCSFGAT 370
+C C N ++ C+C+ G+ A + C S +H C
Sbjct: 52 KVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTV 111
Query: 371 CVPLTHSYECDCPPG 385
C SY C C PG
Sbjct: 112 CFNTVGSYSCRCRPG 126
Score = 43.3 bits (102), Expect = 2e-05
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 323 HTCSHGGACMNHGATFSCLCADGW--FGPLCASRYNLC-------DSTRHNCSFGATCVP 373
C +C+N +C C G+ F + + C ++ +C + C
Sbjct: 7 RWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 374 LTHSYECDCPPG 385
SY+C C PG
Sbjct: 64 TEGSYDCVCSPG 75
Score = 29.4 bits (66), Expect = 1.2
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWFG 348
H C C N ++SC C GW
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Score = 27.9 bits (62), Expect = 4.7
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 363 HNCSFGATCVPLTHSYECDCPPGRTG 388
C ++CV + C C PG +
Sbjct: 7 RWCPQDSSCVN---ATACRCNPGFSS 29
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 49.3 bits (117), Expect = 7e-07
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSK-SPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHS 281
VR ++G L VD+ + + +LT N++ + +GG
Sbjct: 129 VVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG------------KEQGQ 176
Query: 282 GFSGCIFDVELSAGNVGINLYKTRAAEGRGVG--QCGTSQCHNHTC 325
F G + + + V +N+ A VG + + T
Sbjct: 177 PFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLVGEVPSSMTT 221
Score = 33.1 bits (75), Expect = 0.14
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 428 SFSGRRSYISL---PSSELHLHEACIDLEIRPTKDKGLLMYF-GHPQKNSMMTLSLQGGV 483
FS I+ P+ + + + + +L+ + L + G
Sbjct: 42 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK 101
Query: 484 LELRVLMLGDRPKT 497
+ ++ +G
Sbjct: 102 IGVK-FNVGTDDIA 114
Score = 30.8 bits (69), Expect = 0.79
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 76 SSFSAYVIPANIH---HCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGY 132
Y P N L F + A+L + D+L + +G
Sbjct: 47 GGQITYKWPPNDRPSTRADRLAIGFSTVQKE--AVLVRVDSSSGL---GDYLELHIHQGK 101
Query: 133 VVLTWNLGSG 142
+ + +N+G+
Sbjct: 102 IGVKFNVGTD 111
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 47.7 bits (114), Expect = 1e-06
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRY---NLCDSTRHNCSFGATCVPLTH 376
C A C +G+ + C C G C+
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQ-GGKCINTFG 142
Query: 377 SYECDCPPG----RTGKFCE 392
S++C CP G + C+
Sbjct: 143 SFQCRCPTGYYLNEDTRVCD 162
Score = 44.3 bits (105), Expect = 1e-05
Identities = 8/72 (11%), Positives = 13/72 (18%), Gaps = 4/72 (5%)
Query: 325 CSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
C +C G + +L + C + C
Sbjct: 49 CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGE 108
Query: 385 GRT----GKFCE 392
G E
Sbjct: 109 GFRPNPITVILE 120
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C + T G C+N ++ C C + S NC
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRS--GNCYLDIRPRGDNGDTA 63
Query: 380 CDCPPG----RTGKFCEKDESLSD 399
C G + C ++
Sbjct: 64 CSNEIGVGVSKASCCCSLGKAWGT 87
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 46.2 bits (110), Expect = 1e-06
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 320 CHNHTCSHGGACMNHGA-TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
C C + C ++ C+CA+G+ + C A C P
Sbjct: 7 CFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDP-NTQA 61
Query: 379 ECDCPPGRT---GKFCE 392
C+CP G G C
Sbjct: 62 SCECPEGYILDDGFICT 78
Score = 38.5 bits (90), Expect = 7e-04
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWF---GPLCASRYNLCDSTRHNCSFGATCVPLTH 376
C+ C C + SC C +G+ G +C + + C CS C L
Sbjct: 46 CNQTACPAD--CDPNTQ-ASCECPEGYILDDGFIC-TDIDEC-ENGGFCS--GVCHNLPG 98
Query: 377 SYECDCPPG 385
++EC C P
Sbjct: 99 TFECICGPD 107
Score = 28.9 bits (65), Expect = 1.7
Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 361 TRHNCSFGATCVPLTH-SYECDCPPGRTGKFCEKDE 395
R NC C PL SY C C G E
Sbjct: 8 FRANCE--YQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 48.7 bits (115), Expect = 2e-06
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
S G + + C + N+CD+ +C G TC ++
Sbjct: 333 YQGRPWSPGS-YLPIPKGAANACIPSI----SSIGTNVCDNELLHCQNGGTCH---NNVR 384
Query: 380 CDCPPGRTGKFCEK 393
C CP TG CEK
Sbjct: 385 CLCPAAYTGILCEK 398
Score = 47.1 bits (111), Expect = 8e-06
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 14/79 (17%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCV 372
C +GG C N+ CLC + G LC C +C
Sbjct: 361 IGTNVCDNELLHCQNGGTCHNNV---RCLCPAAYTGILC----EKL-----RCEEAGSCG 408
Query: 373 PLTHSYECDCPPGRTGKFC 391
+ + P G
Sbjct: 409 SDSG--QGAPPHGTHHHHH 425
Score = 46.0 bits (108), Expect = 2e-05
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 312 VGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATC 371
+ G +C+ H C+ + +C C GP C + +
Sbjct: 291 IKVRGRCKCNLH----ATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS---PGSY 343
Query: 372 VPLTHSYECDCPPGRTGKFCEKDE 395
+P+ C P + +
Sbjct: 344 LPIPKGAANACIPSISSIGTNVCD 367
Score = 32.1 bits (72), Expect = 0.41
Identities = 10/75 (13%), Positives = 15/75 (20%), Gaps = 4/75 (5%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
+ + A ++ C CV
Sbjct: 258 TVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRC----KCNLHATVCVYDNSKL 313
Query: 379 ECDCPPGRTGKFCEK 393
C+C TG C K
Sbjct: 314 TCECEHNTTGPDCGK 328
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 47.5 bits (112), Expect = 6e-06
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 20/122 (16%)
Query: 380 CDCPPG----RTGKFCEKDESLSDISFSGRRSYISLPSSELHLIINESLSDISFSGRRSY 435
CD G + CE + L + FS +S SL FSG
Sbjct: 6 CDGRGGLKLSQDMDTCE--DILPCVPFSVAKSVKSLYLGR------------MFSGT-PV 50
Query: 436 ISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLELRVLMLGDRP 495
I L L + + R +G+L++ G Q ++ + L+L+ G LEL+ L
Sbjct: 51 IRLRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQ-LRYNGVG 109
Query: 496 KT 497
+
Sbjct: 110 RV 111
Score = 47.5 bits (112), Expect = 7e-06
Identities = 25/271 (9%), Positives = 69/271 (25%), Gaps = 25/271 (9%)
Query: 224 VRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNT---KPMLYLGGHFSKNFSILPHDLPLH 280
+ V + + + V+ + G L Q L +GG ++ P++
Sbjct: 126 ISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLV---QPIN 182
Query: 281 SGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSC 340
GC+ + + S + G + +
Sbjct: 183 PRLDGCMRSWNW----LNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDY-- 236
Query: 341 LCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFC-EKDESLSD 399
+ G + R G + K
Sbjct: 237 MRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQL 296
Query: 400 ISFSGRRSYISLPSSEL--------HLIINESLSDISFSGRRSYISLPSSELHLHEACID 451
+ + + ++L ++ + + + + + G R + +++L A ++
Sbjct: 297 VVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLE 356
Query: 452 LEIRPTKDKGLLMYFGHPQKNSMMTLSLQGG 482
+R +L + G + + +
Sbjct: 357 RHLRS----PVLTFAGGLPDVPVTSAPVTAF 383
Score = 37.9 bits (87), Expect = 0.007
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRL--------TQLNTKPMLYLGGHFSKNFSILP 274
V V + L VD + S +L L + + + GG +
Sbjct: 320 VVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVT--- 376
Query: 275 HDLPLHSGFSGCIFDVELSAGNVGINLYK 303
P+ + + GC+ L ++L +
Sbjct: 377 -SAPVTAFYRGCM---TLEVNRRLLDLDE 401
Score = 31.3 bits (70), Expect = 0.68
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 6/88 (6%)
Query: 65 QASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHL 124
++ Y M + +F F + +L F G + +
Sbjct: 37 KSLYLGRMFSGTPVIRLRFKRLQPTRLVAEFDFRTFDPE--GILLFAGGHQD----STWI 90
Query: 125 AVSFIKGYVVLTWNLGSGWYLVYFEHTY 152
++ G + L +
Sbjct: 91 VLALRAGRLELQLRYNGVGRVTSSGPVI 118
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 45.6 bits (108), Expect = 6e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKS-PGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHS 281
VR ++G L VD+ + +LT N++ + +GG
Sbjct: 95 VVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG------------KEQGQ 142
Query: 282 GFSGCIFDVELSAGNVGINLYKTRAAEGRGVG 313
F G + + + V +N+ A VG
Sbjct: 143 PFQGQLSGLYYNGLKV-LNMAAENDANIAIVG 173
Score = 36.4 bits (84), Expect = 0.009
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 425 SDISFSGRRSYISL---PSSELHLHEACIDLEIRPTKDKGLLMYF-GHPQKNSMMTLSLQ 480
S FS I+ P+ + + + + +L+ + L +
Sbjct: 5 STYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 64
Query: 481 GGVLELRVLMLGDRPKT 497
G + ++ +G
Sbjct: 65 QGKIGVK-FNVGTDDIA 80
Score = 33.7 bits (77), Expect = 0.072
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 66 ASYSSSMSGLS--SFSAYVIPANIH---HCFELKFRFVPNSFDQIALLAFIGQDYQHDAI 120
A S+ Y P N L F + A+L +
Sbjct: 1 APLGSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE--AVLVRVDSSSGL--- 55
Query: 121 TDHLAVSFIKGYVVLTWNLGSG 142
D+L + +G + + +N+G+
Sbjct: 56 GDYLELHIHQGKIGVKFNVGTD 77
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 47.4 bits (112), Expect = 8e-06
Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 11/143 (7%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
+V V + + +D K L++GG P L
Sbjct: 474 SVHVERTRGIFTVQIDEDRRHMQNLTEEQPIEVKK--LFVGGAPP---EFQPSPLRNIPA 528
Query: 283 FSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQ-CHNHTCSHGGACMNHGATFSCL 341
F GC++++ + ++ ++ + A + +G+C + + + + +
Sbjct: 529 FQGCVWNLVI--NSIPMDFAQPIAFKNADIGRCTYQKPREDESEAVPAEVIVQPQPVPT- 585
Query: 342 CADGWFGPLCASRYNLCDSTRHN 364
A + P + + H+
Sbjct: 586 PAFPFPAPTMV--HGPAAAHHHH 606
Score = 46.6 bits (110), Expect = 1e-05
Identities = 42/274 (15%), Positives = 73/274 (26%), Gaps = 67/274 (24%)
Query: 76 SSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVVL 135
Y + D LL ++G D LA+ KG V
Sbjct: 18 DCVRTYRPEIKKGSYNNIVVHVKTAVAD--NLLFYLGSAKFID----FLAIEMRKGKVSF 71
Query: 136 TWNLGSGWYLVYFEHTYLFILSRLRSAQDTRLCCLPLHLILGVDFLCMSIYTSYLQPTGH 195
W++GSG V + + D+ + I S G
Sbjct: 72 LWDVGSGVGRVEYPDLTI---------DDSY-----WY----------RIEASRTGRNGS 107
Query: 196 MFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLN 255
+ V GP+ P+T + S G + ++
Sbjct: 108 ISVRALDGPKASMVPSTYHSVSPPGYTIL----------------------------DVD 139
Query: 256 TKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQC 315
ML++GG I D F+GC+ + +G+ ++ + G C
Sbjct: 140 ANAMLFVGGL---TGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREK------EGDC 190
Query: 316 GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGP 349
G G ++ + + P
Sbjct: 191 KGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYP 224
Score = 42.0 bits (98), Expect = 4e-04
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 427 ISFSGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLEL 486
+S G + I + ++ LL Y G + + + ++ G +
Sbjct: 13 VSSGGD-CVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSF 71
Query: 487 RV 488
Sbjct: 72 LW 73
Score = 40.8 bits (95), Expect = 0.001
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 427 ISFSGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLEL 486
I F G + + + + + + R LLMY M++ L G +++
Sbjct: 206 IQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKV 265
Query: 487 RVLMLGDRPKT 497
LG +
Sbjct: 266 SYD-LGSGMTS 275
Score = 38.1 bits (88), Expect = 0.006
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 19/127 (14%)
Query: 179 DFLCMSIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGG-YTVRVGKNGQQCWLMV 237
DF+ + + ++ + D G + + + G + + +Q + +
Sbjct: 252 DFMSVELSDGHV----KVSYDLGSGMTSVVSNQNHN----DGKWKAFTLSRIQKQANISI 303
Query: 238 DNMG-----NVTSKSPGRLTQLN--TKPMLYLGGHFSKNFSILPHDLPLHSGFSGCIFDV 290
++ NV + S G L+ +Y GG + +SGC+ D+
Sbjct: 304 VDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPT---LRNLRPEVNVKKYSGCLKDI 360
Query: 291 ELSAGNV 297
E+S
Sbjct: 361 EISRTPY 367
Score = 37.0 bits (85), Expect = 0.015
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 76 SSFSAYVIPANIH-HCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVV 134
++ P + + + F+F S ALL ++ D ++V G+V
Sbjct: 211 EGYALVSRPIRWYPNISTVMFKFRTFSSS--ALLMYLATRDLKD----FMSVELSDGHVK 264
Query: 135 LTWNLGSGWYLVYFEHTY 152
++++LGSG V +
Sbjct: 265 VSYDLGSGMTSVVSNQNH 282
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 46.5 bits (110), Expect = 2e-05
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 320 CHNHTCSHGGACMNH-GATFSCL-CADGWF--GPLCASRYNLCDSTRHNC---SFGATCV 372
C ++ C G C + ++SC C G+ G C + C C S CV
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHC-EDLDECALVPDICFSTSKVPRCV 64
Query: 373 PLTHSYECD-CPPGRTG 388
+ C CPP G
Sbjct: 65 NTQPGFHCLPCPPRYRG 81
Score = 36.1 bits (83), Expect = 0.027
Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 19/93 (20%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCL-CADGWFGPLCASR--------------YNLCD 359
C + S C+N F CL C + G N C
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCK 106
Query: 360 STRHNCSFGATCVPLTH----SYECDCPPGRTG 388
HNC A C+ L H Y+C+C G G
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 44.1 bits (104), Expect = 3e-05
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 223 TVRVGKNGQQCWLMVDN--MGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLH 280
V V G L VD + + S ++ + + LGG ++ LPL
Sbjct: 102 QVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNL---RLPLV 158
Query: 281 SGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQC 315
GC+ + + + + C
Sbjct: 159 PALDGCLRRDSW--LDKQAEISASAP---TSLRSC 188
Score = 39.5 bits (92), Expect = 0.001
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 431 GRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLELRV 488
G+ + + + E+R +G++ Y K+ L L+ G E+++
Sbjct: 23 GQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQL 80
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/87 (8%), Positives = 19/87 (21%), Gaps = 6/87 (6%)
Query: 66 ASYSSSMSGLSSFSAYVIPANIHHCFELKFRFVPNSFDQIALLAFIGQDYQHDAITDHLA 125
A + S+ G + F + ++ + + + D
Sbjct: 15 AVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPE--GVIFYGDTNPK----DDWFM 68
Query: 126 VSFIKGYVVLTWNLGSGWYLVYFEHTY 152
+ G + + V
Sbjct: 69 LGLRDGRPEIQLHNHWAQLTVGAGPRL 95
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 40.2 bits (95), Expect = 3e-05
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 358 CDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCE 392
C+S + C G +C +SYEC CP G GK CE
Sbjct: 6 CES--NPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
QC ++ C +GG+C + ++ C C G+ G C
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 43.1 bits (102), Expect = 3e-05
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 315 CGTSQCHNHTCSHGGACMNHGAT---FSCLCADGWFGPLCASRYNL--CDSTRHNCSFGA 369
+ + CS GA T +C G+ ++ C+ C
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCK-NG 120
Query: 370 TCVPLTHSYECDCPPGRTG 388
CV S++C CP G T
Sbjct: 121 LCVNTRGSFKCQCPSGMTL 139
Score = 37.3 bits (87), Expect = 0.003
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 9/66 (13%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
C + C +G C N +F C C+ + TC
Sbjct: 7 CESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIK--------GTCWQTVIDGR 57
Query: 380 CDCPPG 385
C+
Sbjct: 58 CEININ 63
Score = 35.8 bits (83), Expect = 0.009
Identities = 15/102 (14%), Positives = 19/102 (18%), Gaps = 32/102 (31%)
Query: 315 CGTSQCHNH------TCSHG---------------GACMNHGATFSCLCADGWFGPLCAS 353
C C N CS G C C
Sbjct: 12 CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQC 71
Query: 354 RYNLCDSTRHNCSFGATCVPLTHSYECDCPPG---RTGKFCE 392
+L + C+ + C G G CE
Sbjct: 72 CSSLGAAWGSPCTLC--------QVDPICGKGYSRIKGTQCE 105
Score = 28.9 bits (65), Expect = 2.0
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 364 NCSFGATCVPLTHSYECDCPPGRTGKFCEKD 394
+ C S+ C+C T +
Sbjct: 10 SPCINGVCKNSPGSFICECSSESTLDPTKTI 40
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 41.9 bits (99), Expect = 4e-05
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 328 GGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPG 385
+ + + + + N C CS C L YEC CP G
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCS--YVCNDLKIGYECLCPDG 57
Score = 33.8 bits (78), Expect = 0.021
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWFGPLCASRY----NLCDSTRHNCSFGATCVPLTHS 377
N CS+ C + + CLC DG+ L A R + C CS CV L
Sbjct: 36 NGGCSYV--CNDLKIGYECLCPDGFQ--LVAQRRCEDIDEC-QDPDTCS--QLCVNLEGG 88
Query: 378 YECDCPPG----RTGKFCE 392
Y+C C G K C+
Sbjct: 89 YKCQCEEGFQLDPHTKACK 107
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 45.1 bits (106), Expect = 4e-05
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 309 GRGVGQCGTSQCHNH-TCSHGGACMNHGATFSCLCADGWFGPLC----ASRYNLCDSTRH 363
C + C+ T G C T C C G C + L +
Sbjct: 432 AEDPYGCKSCACNPLGTIPGGNPC--DSETGYCYCKRLVTGQRCDQCLPQHWGL-SNDLD 488
Query: 364 NC---------SFGATCVPLTHSYECDCPPGRTGKFCEK 393
C + +C + +C C P G+ C +
Sbjct: 489 GCRPCDCDLGGALNNSCSEDSG--QCSCLPHMIGRQCNE 525
Score = 35.4 bits (81), Expect = 0.042
Identities = 17/111 (15%), Positives = 25/111 (22%), Gaps = 33/111 (29%)
Query: 313 GQCGTSQCHNH-----TCSHGGACMNHGATFSCLCADGWFGPLCAS------RYNLCDST 361
G C C+ H + C+C G C +
Sbjct: 252 GNC---FCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAE 308
Query: 362 RHNCSFGATCVPLTHSYEC-------------------DCPPGRTGKFCEK 393
N + C HS C +C G+ CE+
Sbjct: 309 GRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQ 359
Score = 34.3 bits (78), Expect = 0.085
Identities = 16/92 (17%), Positives = 20/92 (21%), Gaps = 18/92 (19%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSF----- 367
G C N C H N C +F + C
Sbjct: 338 GNVSGGVCDN--CQHNTMGRN-----CEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSEN 390
Query: 368 GATCVPLTHSYE------CDCPPGRTGKFCEK 393
G C T C C G+ C+
Sbjct: 391 GGICDGYTDFSVGLIAGQCRCKLHVEGERCDV 422
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 40.7 bits (96), Expect = 5e-05
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWFGPLCASRY----NLCDSTRHNCSFGATCVPLTHS 377
C G C+N F C C +G+ + + C C G C S
Sbjct: 10 PDLCGRG-QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGVCHNTEGS 67
Query: 378 YECDCPPG 385
Y C+CPPG
Sbjct: 68 YRCECPPG 75
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 43.7 bits (102), Expect = 6e-05
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 25/129 (19%)
Query: 284 SGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCA 343
+ CI + +G T + +C C G C C
Sbjct: 157 TECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECG----ICRCD 212
Query: 344 DGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY-----------ECDCPPGR------ 386
G+ G C + S S C +S +C C
Sbjct: 213 TGYIGKNCECQTQGRSSQELEGS----CRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 268
Query: 387 TGKFCEKDE 395
G++CE
Sbjct: 269 YGQYCEHHH 277
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 39.5 bits (93), Expect = 1e-04
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWF--GPLCASRYNLCDSTRHNCSFGATCVPLTHS 377
C G C+N ++ C C G+ G C + C + TC +
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD-TDECSVGNPCGN--GTCKNVIGG 64
Query: 378 YECDCPPG 385
+EC C G
Sbjct: 65 FECTCEEG 72
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 41.5 bits (97), Expect = 2e-04
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 25/98 (25%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYN-----------LCDSTR 362
+C C G C C G+ G C + D+
Sbjct: 87 RCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 142
Query: 363 HNCSFGATCVPLTHSYECDCPPGR------TGKFCEKD 394
CS CV +C C G++CE D
Sbjct: 143 IICSGLGDCV----CGQCLCHTSDVPGKLIYGQYCECD 176
Score = 40.4 bits (94), Expect = 5e-04
Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 13/88 (14%)
Query: 314 QCGTSQCHNHT----CSHGGACMNHGATFSCLCADGWFGPLCAS-RYNLCDSTRHNCSFG 368
Q C CS G C+ CLC +Y CD+ G
Sbjct: 130 QELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNG 185
Query: 369 ATCVPLTH----SYECDCPPGRTGKFCE 392
C +C C PG G C+
Sbjct: 186 QVCGGPGRGLCFCGKCRCHPGFEGSACQ 213
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 41.2 bits (95), Expect = 3e-04
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 8/84 (9%)
Query: 313 GQCGTSQCHNHTCSHGGA----CMNHGATFSCLCADGWFGPLC----ASRYNLCDSTRHN 364
C C C G ++ + C CA G +
Sbjct: 87 DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXC 146
Query: 365 CSFGATCVPLTHSYECDCPPGRTG 388
+ C + Y C C G T
Sbjct: 147 NTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 40.0 bits (92), Expect = 6e-04
Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 316 GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCD--STRHNCSFGATCVP 373
C + C C +G+ ++C + + +
Sbjct: 52 LGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLS 111
Query: 374 LTHSYECDCPPGRTGKFCEK 393
S C C G ++
Sbjct: 112 EIQSAGCSCAIGXVPNPEDE 131
Score = 33.5 bits (75), Expect = 0.090
Identities = 12/85 (14%), Positives = 17/85 (20%), Gaps = 9/85 (10%)
Query: 324 TCSHGGACMNHGATFSCLCADGWFGP---------LCASRYNLCDSTRHNCSFGATCVPL 374
T G + F C+C +G C
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 375 THSYECDCPPGRTGKFCEKDESLSD 399
+ Y C C G T +
Sbjct: 71 VNMYXCGCIEGYTLXEDTCVLDVCQ 95
Score = 33.1 bits (74), Expect = 0.13
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 358 CDSTRHNCSFGATCVPLTHSYECDCPPGRTG 388
T V +++ + C C G
Sbjct: 5 SAVTVDTICXNGQLVQMSNHFXCMCNEGLVH 35
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHSG 282
V V G L VD + + + + LGG ++ LPL
Sbjct: 90 QVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMR----IALGGLLFPASNLR---LPLVPA 142
Query: 283 FSGCIFDVEL 292
GC+
Sbjct: 143 LDGCLRRDSW 152
Score = 39.1 bits (91), Expect = 0.001
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 434 SYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNSMMTLSLQGGVLELRV 488
+ ++ +++ + E+R +G++ Y K+ L L+ G E+++
Sbjct: 16 AVMTFDLTKIT--KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQL 68
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 40.5 bits (95), Expect = 3e-04
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCD 359
C T+ C + +CS G C+ ++C C G++GP C + D
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 345 GWFGPLCASRYN-LC---DSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKDESLSD 399
W C + + LC +CS C+ +Y C C PG G CE D
Sbjct: 103 KWNDEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 40.2 bits (94), Expect = 4e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T+ C +CS G C+ ++C C G++GP C
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 34.0 bits (78), Expect = 0.049
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 365 CSFGATCVPLTHSYECDCPPGRTGKFCE 392
CS CV + ++Y C+C G G C+
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 39.0 bits (91), Expect = 9e-04
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C T+ C N +CS G C+ ++C C G+ G C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 35.5 bits (82), Expect = 0.012
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 364 NCSFGATCVPLTHSYECDCPPGRTGKFCEK 393
+CS CV ++Y C C PG +G CE+
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 37.8 bits (87), Expect = 0.001
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHG-ATFSCLCADGWF--GPLCASRYNLCDSTRHNCSFGA 369
+C + AC + T C G+ G C C+ C+ A
Sbjct: 6 NMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEA 65
Query: 370 TCVPLT-HSYECDCPPGRT-----GKFC 391
C EC C + G FC
Sbjct: 66 ECTMDDKKEVECKCTKEGSEPLFEGVFC 93
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 38.6 bits (89), Expect = 0.003
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 358 CDSTRHNCSFGATCVPLTHSYECDCPPG--RTGKFCEKDESLSDISFSGRRSYISLPSSE 415
C + RH CS A C + C C G+ C + S ++ + S
Sbjct: 8 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQV 67
Query: 416 LHLIINESL-SDISFSGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMY--FGHPQKN 472
+ N L S + + RSY ++ + + + + P G ++ F Q
Sbjct: 68 PVVFENTDLHSYVVMNHGRSYTAISTIPETVGYS-----LLPLAPIGGIIGWMFAVEQDG 122
Query: 473 SMMTLSLQGGVLE 485
S+ GG
Sbjct: 123 FKNGFSITGGEFT 135
Score = 29.7 bits (66), Expect = 2.2
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
C ++ H CS C ++ F C C + G C +
Sbjct: 8 CANNR---HQCSVHAECRDYATGFCCRCVANYTG-----NGRQCVAEGSPQRVNGKVKG- 58
Query: 375 THSYECDCPPGRTGKFCEKDESLSDISFSGRRSYISL 411
+ E + S + + RSY ++
Sbjct: 59 ----RIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAI 91
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 34.4 bits (79), Expect = 0.006
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 316 GTSQCHNHTCSHGGACMNHGA--TFSCLCADGWFGPLC 351
G ++ C +GG CM+ + +++C C G+ G C
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 29.0 bits (65), Expect = 0.38
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 353 SRYNLCDSTRHN-CSFGATC--VPLTHSYECDCPPGRTGKFCE 392
+ Y C S+ C G C + SY C+C G +G C+
Sbjct: 1 NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 36.9 bits (85), Expect = 0.006
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
+CG Q N C + C +G C + G C + + + GATC
Sbjct: 2 RCG-EQGSNMECPNNLCCSQYG---YCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCT- 56
Query: 374 LTHSYECDCPPGRTG 388
+ +C G G
Sbjct: 57 ---NNQCCSQYGYCG 68
Score = 31.5 bits (71), Expect = 0.35
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 311 GVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASR 354
CG C++ C G SC G+ G C S
Sbjct: 128 TDKPCG-KDAGGRVCTNNYCCSKWG---SCGIGPGYCGAGCQSG 167
Score = 28.8 bits (64), Expect = 2.4
Identities = 18/109 (16%), Positives = 24/109 (22%), Gaps = 33/109 (30%)
Query: 313 GQCGTSQCH---------------------NHTCSHGGACMNHGATFSCLCADGWFGPLC 351
G CG + C + C G C + G C
Sbjct: 65 GYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWG---FCGLGSEFCGGGC 121
Query: 352 ASRY------NLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKD 394
S D+ C+ C C PG G C+
Sbjct: 122 QSGACSTDKPCGKDAGGRVCTNNYCCS--KWGS-CGIGPGYCGAGCQSG 167
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 37.9 bits (87), Expect = 0.007
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWF--GPLCASRYNLCDSTRHNCSFGATCVPLTHSYE 379
N CSH C + + CLC DG+ + C CS CV L Y+
Sbjct: 7 NGGCSHV--CNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCS--QLCVNLEGGYK 61
Query: 380 CDCPPGRT 387
C C G
Sbjct: 62 CQCEEGFQ 69
Score = 33.3 bits (75), Expect = 0.20
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 356 NLCDSTRHNCSFGATCVPLTHSYECDCPPG 385
N C CS C L YEC CP G
Sbjct: 1 NECLDNNGGCS--HVCNDLKIGYECLCPDG 28
Score = 32.5 bits (73), Expect = 0.28
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 311 GVGQCGTSQCHNHTCSH----GGACMNHGATFSCLCADGW 346
GV C + N C + H F+C C DG
Sbjct: 348 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 387
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 36.7 bits (84), Expect = 0.009
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 20/115 (17%)
Query: 223 TVRVGKNGQQCWLMVDNMGNVTSKSPG-----RLTQLNTKPMLYLGGH------------ 265
VR ++G L VD+ + G RL + LG
Sbjct: 101 VVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQL 160
Query: 266 --FSKNFSILPHDLPLHSGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTS 318
F+ +I+ F G + + + V +N+ A VG
Sbjct: 161 TIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLV 214
Score = 32.8 bits (74), Expect = 0.17
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 428 SFSGRRSYIS---LPSSELHLHEACIDLEIRPTKDKGLLMYF-GHPQKNSMMTLSLQGGV 483
FS I+ P+ + + + + +L+ + L + G
Sbjct: 14 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK 73
Query: 484 LELR 487
+ ++
Sbjct: 74 IGVK 77
Score = 30.5 bits (68), Expect = 0.95
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 63 IGQASYSSSMSGLSSFSAYVIPANIH---HCFELKFRFVPNSFDQIALLAFIGQDYQHDA 119
G A + S Y P N L F + A+L +
Sbjct: 6 GGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE--AVLVRVDSSSGL-- 61
Query: 120 ITDHLAVSFIKGYVVLTWNLGSG 142
D+L + +G + + +N+G+
Sbjct: 62 -GDYLELHIHQGKIGVKFNVGTD 83
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 33.3 bits (76), Expect = 0.011
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 320 CHNHTCSHGGACMNHGA--TFSCLCADGWFGPLC 351
H+ C H G CM A ++C C G+ G C
Sbjct: 9 SHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 354 RYNLCDSTRHN-CSFGATC--VPLTHSYECDCPPGRTGKFCE 392
+ C + C C + Y C+C G G+ C+
Sbjct: 2 SDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 37.1 bits (85), Expect = 0.013
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 311 GVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGW----FGPLCASRYNLCDSTRHNCS 366
G C + C+ C C C G+ G C N C CS
Sbjct: 2 GEENCNVNNGG---CAQK--CQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEE-GYCS 54
Query: 367 FGATCVPLTHSYECDCPPG 385
G C +++C C G
Sbjct: 55 QG--CTNSEGAFQCWCEAG 71
Score = 32.4 bits (73), Expect = 0.31
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGW 346
+N C+H C+ G ++C C G+
Sbjct: 346 GKNRCGDNNGGCTHL--CLPSGQNYTCACPTGF 376
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 35.7 bits (81), Expect = 0.019
Identities = 13/79 (16%), Positives = 15/79 (18%), Gaps = 16/79 (20%)
Query: 315 CGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPL 374
S G + C C G C
Sbjct: 118 AFEVDV-IVMNSEGNTILXTPQNAIFFK--TCQQAECPG----------GCRNGGFCNE- 163
Query: 375 THSYECDCPPGRTGKFCEK 393
C+CP G G CE
Sbjct: 164 --RRICECPDGFHGPHCEG 180
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 36.5 bits (83), Expect = 0.020
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 8/95 (8%)
Query: 311 GVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGAT 370
+ CS G C+ SC+C + W G C + + A
Sbjct: 527 AIDNVYIGDGCLDMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPTQLKDNFNRAP 582
Query: 371 CVPLTHSYECDCPPGRTGKFCEKDESLSDISFSGR 405
G+ C S + FSG
Sbjct: 583 SN----QNWLTVSGGKLSTVCGAVASGLALHFSGG 613
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 32.6 bits (74), Expect = 0.024
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 325 CSHGGACMNH----GATFSCLCADGWFGPLCASRY 355
C + C +SC CA G+ G C +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 25.7 bits (56), Expect = 6.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 365 CSFGATC--VPLTHS--YECDCPPGRTGKFCE 392
C A C V + Y C+C G G+ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 32.6 bits (74), Expect = 0.026
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 325 CSHGGACMNH----GATFSCLCADGWFGPLCASRY 355
C + C +SC CA G+ G C +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE 50
Score = 25.7 bits (56), Expect = 7.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 365 CSFGATCVPL----THSYECDCPPGRTGKFCE 392
C A C + Y C+C G G+ CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 35.0 bits (79), Expect = 0.054
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 324 TCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCP 383
CS G C++ C C G+ N + + F PL
Sbjct: 197 YCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPL----WYKIT 248
Query: 384 PGRTGKFCEKDESLSDISF--SGRRSYISLP 412
G+ G C + F G+R ++P
Sbjct: 249 GGQVGTGCGTLNDGRSLYFNGLGKREARTVP 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 34.6 bits (79), Expect = 0.061
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 310 RGVGQCGTSQCHNHTCSH----GGACMNHGATFSCLCADGW 346
RGV C + N C + H F+C C DG
Sbjct: 265 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 305
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 34.4 bits (78), Expect = 0.079
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDS 360
S CS G C N C+C W G C + + D
Sbjct: 445 STCLSSKEGTICSGNGVCSNEL---KCVCNRHWIGSDCNTYFPHNDD 488
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 34.4 bits (78), Expect = 0.096
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
+CH+ C N C D P+ N C CS C L Y
Sbjct: 262 KCHSGECITLDKVCNMARD----CRDWSDEPIKECGTNECLDNNGGCSH--VCNDLKIGY 315
Query: 379 ECDCPPGR 386
EC CP G
Sbjct: 316 ECLCPDGF 323
Score = 32.9 bits (74), Expect = 0.30
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVP 373
+CGT++C ++ C + + CLC DG+ ++ + + CV
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ-LCVN 349
Query: 374 LTHSYECDCPPG 385
L Y+C C G
Sbjct: 350 LEGGYKCQCEEG 361
Score = 30.9 bits (69), Expect = 1.2
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 315 CGTSQCHNHTCSH----GGACMNHGATFSCLCADGW 346
C + N C + H F+C C DG
Sbjct: 646 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 681
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 34.1 bits (77), Expect = 0.10
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 358 CDSTRHNCSFGATCVPLTHSYE---CDCPPGRTGKFCEKDES 396
C T+ C + C C PGR G+ CE
Sbjct: 459 CSDTQPQAP---HCSDGQGHLQCGVCSCAPGRLGRLCESRGL 497
Score = 33.4 bits (75), Expect = 0.17
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 314 QCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
C +Q CS G + G C CA G G LC
Sbjct: 458 NCSDTQPQAPHCSDGQGHLQCGV---CSCAPGRLGRLC 492
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 32.9 bits (74), Expect = 0.18
Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHGATFSCLCADG-----WFGPLCAS---RY-NLCDSTRH 363
C S C C G AC G C CA +C S Y + C+
Sbjct: 67 LPCKDS-CDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAA 125
Query: 364 NCSFGATCVPL---THSYECDCPPGRTGKFCEKDESLSDISFSGRRSYISLPSSELH 417
C + C+ + C D++ S R + +PSS
Sbjct: 126 RCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQ 182
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 32.1 bits (73), Expect = 0.21
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 19/104 (18%)
Query: 307 AEGRGVGQCGTSQCHNH-TCSHGGACMNHGATFSCL-CADGWFGPLCAS------RYNLC 358
V C QC+++ + G C + T CL C G C L
Sbjct: 45 GSNGPVRLCRPCQCNDNIDPNAVGNC--NRLTGECLKCIYNTAGFYCDRCKEGFFGNPLA 102
Query: 359 DSTRHNC---------SFGATCVPLTHSYECDCPPGRTGKFCEK 393
+ C + + +C C P +G+ C
Sbjct: 103 PNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT 146
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 364 NCSFGATCVPLTHSYE---CDCPPGRTGKFCEK 393
C G++C + + E CP G GK CE
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCEL 34
Score = 29.8 bits (67), Expect = 1.3
Identities = 19/100 (19%), Positives = 26/100 (26%), Gaps = 30/100 (30%)
Query: 314 QC-GTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC--------------ASRYNLC 358
C G S C + C C G G C LC
Sbjct: 2 PCPGGSSCAIVPKTKEVVC--------THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Query: 359 D----STRHNCSFGATCVPLTHSYEC-DCPPGRTGKFCEK 393
+ + + C LT EC C G +C++
Sbjct: 54 RPCQCNDNIDPNAVGNCNRLTG--ECLKCIYNTAGFYCDR 91
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.6 bits (74), Expect = 0.27
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 303 KTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLC 351
K + G C T++C C HGG C+ CLC G+ GP C
Sbjct: 409 KCCCSPGWEGDFCRTAKC-EPACRHGGVCVRPN---KCLCKKGYLGPQC 453
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 32.2 bits (72), Expect = 0.29
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 20/90 (22%)
Query: 313 GQCGTSQCHNHTCSH-----------------GGACMNHGATFSCLCADGWFGPL-CASR 354
G C Q TCS A N + + G+ G + C
Sbjct: 1 GVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPC 60
Query: 355 YNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
+ CD C G C L C+C P
Sbjct: 61 KDSCD--GVECGPGKACRMLGGRPRCECAP 88
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 31.4 bits (70), Expect = 0.29
Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 320 CHNHTCSHGGAC-MNHGATFSCLCADG-----WFGPLCASR----YNLCDSTRHNCSFGA 369
C N C G C MN C+CA W GP+C N C + C
Sbjct: 6 CENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQP 65
Query: 370 TCVPLTHSYECDCPPGRTGKFCEKD 394
Y+ C FC
Sbjct: 66 EL---EVQYQGKCKKTCRDVFCPGS 87
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 29.7 bits (66), Expect = 0.30
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 318 SQCHNHTCSHGGACM-----NHGATFSCLCADGWFGPLC 351
++ C +GG C ++ + + C C G+ G C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
Score = 27.0 bits (59), Expect = 2.6
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 353 SRYNLCDSTRHN-CSFGATC-----VPLTHSYECDCPPGRTGKFCE 392
S C C G C + Y C C PG TG C
Sbjct: 1 SHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 29.9 bits (68), Expect = 0.37
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 356 NLCDSTRHNCSFGATCVPLTHSYECDCPPG 385
+ C C A C + +EC+CP G
Sbjct: 4 DECSLKPSICG-TAVCKNIPGDFECECPEG 32
Score = 26.9 bits (60), Expect = 4.9
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGWF----GPLCASRYNLCDSTRHNCSFGATCVPLTHS 377
C C N F C C +G+ C + C + C+ CV
Sbjct: 10 PSICGTA-VCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSE--NMCAQ--LCVNYPGG 63
Query: 378 YECDC--PPGRT----GKFCE 392
Y C C G K CE
Sbjct: 64 YTCYCDGKKGFKLAQDQKSCE 84
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 32.5 bits (73), Expect = 0.41
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 310 RGVGQCGTSQCHNHTCSH----GGACMNHGATFSCLCADGW 346
RGV C + N C + H F+C C DG
Sbjct: 659 RGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 699
Score = 31.3 bits (70), Expect = 0.79
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 308 EGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSF 367
E +N CSH C + + CLC DG+ ++ + +
Sbjct: 305 EPIKECGTNECLDNNGGCSHV--CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS 362
Query: 368 GATCVPLTHSYECDCPPG 385
CV L Y+C C G
Sbjct: 363 Q-LCVNLEGGYKCQCEEG 379
Score = 29.8 bits (66), Expect = 2.4
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 320 CHNHTCSHGGACMNHGA-TFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSY 378
C C + + C+ +G + C + L T+ + G+ +
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 379 ECDCPPGRTG 388
Sbjct: 404 HEVRKMTLDR 413
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 31.8 bits (71), Expect = 0.54
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 319 QCHNHTCSHGGACMNHGATFSCLCADGW 346
+N C+H C+ G ++C C G+
Sbjct: 308 GDNNGGCTH--LCLPSGQNYTCACPTGF 333
Score = 31.4 bits (70), Expect = 0.63
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 319 QCHNH-TCSHGGACMNHGATFSCLCADGWF----GPLCASRYNLCDSTRHNCSFGATCVP 373
+C CS G C N F C C G+ C + N +P
Sbjct: 3 ECAEEGYCSQG--CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 374 LTHSYECDCPPGRTGKFCEKDESLSDISFS----GRRSYISLPSSELHLIINESLS 425
Y + + +S R +L S + +++ L
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 30.7 bits (68), Expect = 0.58
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 358 CDSTRHN------CSFGATCV---PLTHSYECDCPPGRTGKFCEKDES 396
+ H C G TCV ++ + C+CP G+ CE D+S
Sbjct: 2 SSNELHQVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS 49
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 31.7 bits (71), Expect = 0.62
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 300 NLYKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGW 346
+L +A V N CSH C+ C C G+
Sbjct: 563 DLMGLKATNVHRVIGSNPCAEENGGCSHL--CLYRPQGLRCACPIGF 607
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 31.4 bits (70), Expect = 0.73
Identities = 17/114 (14%), Positives = 23/114 (20%), Gaps = 32/114 (28%)
Query: 312 VGQCGTSQCHNHTCSHGGACMNHGATFSCLCADGWFGPLCAS------------------ 353
+ G CH H C C G C
Sbjct: 260 ISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSA 319
Query: 354 ---RYNLCDSTRHNCSFGATCVPLTHSYE-----------CDCPPGRTGKFCEK 393
+ C ++C + S DC TG CE+
Sbjct: 320 NECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCER 373
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 31.0 bits (69), Expect = 0.74
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 4/67 (5%)
Query: 331 CMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRTGKF 390
+ ++ C H C S +C+C TG
Sbjct: 243 ALGGTYVQRENLYKYFYAISNIEVIGRCKCNLH----ANLCSMREGSLQCECEHNTTGPD 298
Query: 391 CEKDESL 397
C K +
Sbjct: 299 CGKCKKN 305
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.4 bits (71), Expect = 0.84
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 5/54 (9%)
Query: 350 LCASRYNLC--DSTR---HNCSFGATCVPLTHSYECDCPPGRTGKFCEKDESLS 398
LC + + STR G + HS C E L
Sbjct: 254 LCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD 307
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 30.7 bits (68), Expect = 0.90
Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 21/169 (12%)
Query: 320 CHNHTCSHGGACMNHGA---------TFSCLCADGWFGPLCAS--RY--NLCDSTRHNC- 365
C NH C HG C SC G F +C++ + + C C
Sbjct: 6 CQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 65
Query: 366 -SFGATCVPLTHSYECDCPPGRTGKFCEKDESLSDISFSGRRSYISLPSSELHLIINESL 424
L Y C E E + + ++L +E
Sbjct: 66 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYER------DEDN 119
Query: 425 SDISFSGRRSYISLPSSELHLHEACIDLEIRPTKDKGLLMYFGHPQKNS 473
+ ++ + + +E L + + FG ++
Sbjct: 120 NLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHP 168
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 30.8 bits (69), Expect = 0.90
Identities = 10/57 (17%), Positives = 12/57 (21%), Gaps = 10/57 (17%)
Query: 320 CHNHTCSHGGACMNHGATFSCLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTH 376
N CSH + C C G C G + H
Sbjct: 272 IDNGGCSHLCLMSPVKPFYQCACPTGV----------KLLENGKTCKDGNSHHHHHH 318
Score = 28.5 bits (63), Expect = 4.7
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 350 LCASRYNLCDSTRHNCSFGATCVPLTHSYECDCPPGRT----GKFCEKDES 396
+ N C CS P+ Y+C CP G GK C+ S
Sbjct: 262 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.0 bits (69), Expect = 1.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 380 CDCPPGRTGKFCE 392
C C PG G CE
Sbjct: 460 CRCGPGWLGSQCE 472
Score = 30.7 bits (68), Expect = 1.3
Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 319 QCHNHTCSHGGACMNHGATFS---CLCADGWFGPLC 351
C + C N TF C C GW G C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQC 471
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 28.3 bits (63), Expect = 1.2
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 320 CHNHTCSHGGAC-MNHGATFSCLCADG-----WFGPLCASR----YNLCDSTRHNCSFGA 369
C N C G C MN C+CA W GP+C N C + C
Sbjct: 4 CENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQP 63
Query: 370 TCVPLTHSYEC 380
+ + + +C
Sbjct: 64 E-LEVQYQGKC 73
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 30.5 bits (68), Expect = 1.5
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 365 CSFGATCVPL-THSYECDCPP-GRTGKFCEKDESLSDISFSGRRSYISLPSSELHLIINE 422
C C+ Y+CDC G G+ C E L+ I + + + +H I+
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPT-----PNTVHYILTH 63
Query: 423 SLSDISFSGRRSYISLPSSELHLHEACIDLEIRPTKD 459
+ ++ + L ++ PT +
Sbjct: 64 FKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYN 100
Score = 28.2 bits (62), Expect = 7.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 320 CHNHTCSHGGACMNHGA-TFSCLCAD-GWFGPLCASRYNL 357
C ++ C + G CM+ G + C C G++G C + L
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFL 43
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/79 (15%), Positives = 18/79 (22%), Gaps = 8/79 (10%)
Query: 313 GQCGTSQCHNHTCSHGGACMNHGATFSCL-CADGWFGPLCASR-----YNLCDSTRHNCS 366
G C + C C C+ C + + C Y+ D N S
Sbjct: 200 GCTAEGLCCHSECLGN--CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 367 FGATCVPLTHSYECDCPPG 385
F +
Sbjct: 258 FCQDLHHKCKNSRRQGCHQ 276
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/109 (11%), Positives = 19/109 (17%), Gaps = 14/109 (12%)
Query: 302 YKTRAAEGRGVGQCGTSQCHNHTCSHGGACMNH------GATFSCLCADGWFGPLCASRY 355
Y G C + G C C G Y
Sbjct: 156 YDADQKFGFCPMAAHEEICTTNEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAY 215
Query: 356 NLCDSTRH---NCSFGATCVPLT----HSYECDCPPGRTGKF-CEKDES 396
+ H C C G++ C+ +
Sbjct: 216 SQLRDQCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQ 264
>3myu_A High affinity transport system protein P37; Mg289, CYPL,
extracytoplasmic, thiamine binding protein, lipoprotein;
HET: VIB; 1.95A {Mycoplasma genitalium}
Length = 344
Score = 29.9 bits (66), Expect = 1.8
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 16/100 (16%)
Query: 184 SIYTSYLQPTGHMFVDTYRGPRRIFTPNTISAKSKRGGYTVRVGKNGQQCWLMVDNMGNV 243
+ Y +P+ V YR I + K+ ++ W G
Sbjct: 137 NRYDFLYEPSK--LVSFYRSMILITGSASEITAIKKAW--------NEKNWNQFMKFGIG 186
Query: 244 TSK--SPGRLTQLNTKPMLYLGGHFSKNFSILPHDLPLHS 281
+ S R P L HF+KN+ L + +
Sbjct: 187 HGQTNSASRFEL----PDLLFRKHFAKNYPGLQNAINSDP 222
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/142 (14%), Positives = 32/142 (22%), Gaps = 16/142 (11%)
Query: 266 FSKNFSILPHDLPLHSGFSGCIFDVELSAGNVGINLYKTRAAEGRGVGQCGTSQCHNHTC 325
I D+ + + C + G + KT+ RG +C + H
Sbjct: 426 LRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHAL 485
Query: 326 SHGGACMNHGATFSCLCADGWFGPLCASRYNL----------------CDSTRHNCSFGA 369
C C + G C + L C +
Sbjct: 486 CSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNI 545
Query: 370 TCVPLTHSYECDCPPGRTGKFC 391
TC C G C
Sbjct: 546 TCTGRGPDNCIQCAHYIDGPHC 567
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/90 (22%), Positives = 25/90 (27%), Gaps = 13/90 (14%)
Query: 320 CHNHTCSHGGAC-MNHGATFSCLCAD-----GWFGPLCASRY----NLCDSTRHNCSFGA 369
C N C G C MN C+CA W GP+C N C + C
Sbjct: 66 CENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQP 125
Query: 370 TCVPLTH---SYECDCPPGRTGKFCEKDES 396
C C D++
Sbjct: 126 ELEVQYQGRCKKTCRDVFCPGSSTCVVDQT 155
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 316 GTSQCH---NHTCSHGGACMNHGATFSCLCADGWF----GPLCASRYNLCDSTR 362
++CH C H C+ +++C CA G+ C
Sbjct: 1 AKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 52
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 28.5 bits (63), Expect = 3.8
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 340 CLCADGWFGPLCASRYNLCDSTRHNCSFGATCVPLTHS--YECDCPPG 385
C C + + C + C G + C C G
Sbjct: 86 CGCRKNQYRHYWSENLFQCFNCS-LCLNGTVHLSCQEKQNTVCTCHAG 132
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 27.9 bits (61), Expect = 4.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 364 NCSFGATCV---PLTHSYECDCPPGRTGKFCEKDESLSDISFSGR 405
+C G TCV ++ + C+CP G+ CE D+S + +G
Sbjct: 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGH 46
>2gh0_A GFR-alpha-3, GDNF family receptor alpha-3; cystine-knot, helix
bundle, hormone-growth factor complex; HET: NAG BMA MAN;
1.92A {Homo sapiens}
Length = 213
Score = 28.2 bits (62), Expect = 4.9
Identities = 19/103 (18%), Positives = 23/103 (22%), Gaps = 21/103 (20%)
Query: 314 QCGTSQCHNHTC--------SHGGACMNHGATFSCLCA----------DGWFGPLCASRY 355
C C H C G C CA P CA
Sbjct: 35 ACSGPHCQRHVCLRQLLTFFEKAAEPHAQGLLL-CPCAPNDRGCGERRRNTIAPNCALPP 93
Query: 356 NL--CDSTRHNCSFGATCVPLTHSYECDCPPGRTGKFCEKDES 396
C R C C ++ C P C ++S
Sbjct: 94 VAPNCLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQS 136
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 28.6 bits (63), Expect = 4.9
Identities = 16/92 (17%), Positives = 19/92 (20%), Gaps = 30/92 (32%)
Query: 305 RAAEGRGVGQCGTSQCHNHT------------CSHGGACMNHGATFSCLCADGWFGPLCA 352
R A +C C+ + HGG C N C D G C
Sbjct: 298 RRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTN--------CRDNTDGAKC- 348
Query: 353 SRYNLCDSTRHNCSFGATCVPLTHSYECDCPP 384
C C P
Sbjct: 349 ---ERCRENFFRLGNTEACSP------AAAHH 371
Score = 28.6 bits (63), Expect = 5.2
Identities = 15/104 (14%), Positives = 21/104 (20%), Gaps = 20/104 (19%)
Query: 310 RGVGQCGTSQCHNH-----TCSHGGACMN--HGAT-FSC-LCADGWFG---------PLC 351
G +C+ H N H C C +
Sbjct: 247 SDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESAS 306
Query: 352 ASRYNLCDSTRHNCSFGATCVPLTHSYE--CDCPPGRTGKFCEK 393
C+ C F T +C G CE+
Sbjct: 307 ECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCER 350
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 26.0 bits (57), Expect = 5.0
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 321 HNHTCSHGGACMNHGA--TFSCLCADGWFGPLC 351
+ C HG C +C C +FG C
Sbjct: 16 FQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERC 47
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 26.6 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 321 HNHTCSHGGACMNHGA--TFSCLCADGWFGPLC 351
+ C HG C SC+C G+ G C
Sbjct: 44 YKDFCIHG-ECKYVKELRAPSCICHPGYHGERC 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.5 bits (64), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 371 CVPLTHSYECD--CPPGRTGKFCEKDESLSDISF 402
C P EC CP +TGK C + S I+F
Sbjct: 16 CKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAF 49
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 25.8 bits (57), Expect = 6.5
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGW 346
N C C + C CA G+
Sbjct: 8 NGDCDQ--FCHEEQNSVVCSCARGY 30
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 28.5 bits (64), Expect = 6.5
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 94 KFRFVPNSFDQIALLAFIGQDYQHDAITDHLAVSFIKGYVV-LTWNLGSGWYLVYFEH 150
+ + + + +T A + +G V + LV F+H
Sbjct: 392 NKGYRWQH--EAVIALASPDNMNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQH 447
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 28.1 bits (63), Expect = 6.6
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 406 RSYIS-LPSSELHLIINESLSDISFSGRRSYISLPSSELHLHEACI 450
R ++ + SEL ++ L+ I+ Y S+ +L A
Sbjct: 168 RPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASF 213
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.4 bits (56), Expect = 6.7
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 322 NHTCSHGGACMNHGATFSCLCADGW 346
N C C + C CA G+
Sbjct: 5 NGGCDQ--FCREERSEVRCSCAHGY 27
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 28.0 bits (62), Expect = 7.2
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 34 NFQHYFDTNQPINQLLSIIFTNFLPPDIEIGQASYSSSMSGLSSFSAYVIPANIHHCFEL 93
N H D + L + G + + S ++ I + +
Sbjct: 85 NRIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDE 144
Query: 94 KFRFVPNSFDQI----ALLAFIGQDYQHDAIT 121
+ + ++ + +A DY H T
Sbjct: 145 SYGCLSSNIPALELMALYVAAAMHDYDHPGRT 176
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 27.9 bits (63), Expect = 7.6
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 246 KSPGRLTQLNTKPMLYL-GGH 265
P RL +++ P++ + G H
Sbjct: 296 HWPARLEKISDTPLIVIDGAH 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.444
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,665,164
Number of extensions: 452129
Number of successful extensions: 1595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 358
Length of query: 500
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 402
Effective length of database: 3,965,535
Effective search space: 1594145070
Effective search space used: 1594145070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.9 bits)