BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7015
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 24/137 (17%)
Query: 63 NWDEC--WSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLL 120
+ DEC +NPC + G CI+ + ++ C C GYTGP CE +V+EC SNPCQN+ TC D
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD-- 61
Query: 121 NGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGF 180
I + C C PGY G CE N DEC S+PC +NG C D +N F
Sbjct: 62 -----------------QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 104
Query: 181 VCSCHPGFTGWTGSLCQ 197
C C TG+TG LCQ
Sbjct: 105 QCECP---TGFTGHLCQ 118
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 24/141 (17%)
Query: 100 SNVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
+VDEC G+NPC++ G CI+ + ++ C C GYTGP CE
Sbjct: 3 QDVDECSLGANPCEH-------------------AGKCINTLGSFECQCLQGYTGPRCEI 43
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
+V+EC SNPCQN+ TC D + F C C PG+ G C+ T+EC SSPC + G C+D
Sbjct: 44 DVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH---CEVNTDECASSPCLHNGRCLDK 100
Query: 218 HAAYTCACLFGFTGRNCDIEL 238
+ C C GFTG C ++L
Sbjct: 101 INEFQCECPTGFTGHLCQVDL 121
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
S+ C C+ GYTG C+ + +EC SNPC N +C+D I + C C PGY G CE N DEC
Sbjct: 27 SFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDEC 86
Query: 106 GSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
S+PC +NG C D +N F C C GFTG+
Sbjct: 87 ASSPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 157 SNVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVC 214
+VDEC G+NPC++ G C + L F C C G+TG C+ NEC S+PCQN C
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQC---LQGYTGPRCEIDVNECVSNPCQNDATC 59
Query: 215 VDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQ 273
+D + C C+ G+ G +C++ C +SPCL+ CL C C + G+ CQ
Sbjct: 60 LDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 205 SSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQVCYCV 264
++PC++ G C++ ++ C CL G+TG C+I++ C ++PC N+A CL C C+
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 71
Query: 265 PDYHGNRCQYQYDECQITP 283
P Y G C+ DEC +P
Sbjct: 72 PGYEGVHCEVNTDECASSP 90
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
+ C C+ GY GVHC+ N DEC S+PC + G C+D I + C CP G+TG C+ ++
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 24/137 (17%)
Query: 63 NWDEC--WSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLL 120
+ DEC +NPC + G CI+ + ++ C C GYTGP CE +V+EC SNPCQN+ TC D
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ- 60
Query: 121 NGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGF 180
I + C C PGY G CE N DEC S+PC +NG C D +N F
Sbjct: 61 ------------------IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 102
Query: 181 VCSCHPGFTGWTGSLCQ 197
C C TG+TG LCQ
Sbjct: 103 QCECP---TGFTGHLCQ 116
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
S+ C C+ GYTG C+ + +EC SNPC N +C+D I + C C PGY G CE N DEC
Sbjct: 25 SFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDEC 84
Query: 106 GSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
S+PC +NG C D +N F C C GFTG+
Sbjct: 85 ASSPCLHNGRCLDKINEFQCECPTGFTGH 113
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 74/137 (54%), Gaps = 24/137 (17%)
Query: 100 SNVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
+VDEC G+NPC++ G CI+ + ++ C C GYTGP CE
Sbjct: 1 QDVDECSLGANPCEH-------------------AGKCINTLGSFECQCLQGYTGPRCEI 41
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
+V+EC SNPCQN+ TC D + F C C PG+ G C+ T+EC SSPC + G C+D
Sbjct: 42 DVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH---CEVNTDECASSPCLHNGRCLDK 98
Query: 218 HAAYTCACLFGFTGRNC 234
+ C C GFTG C
Sbjct: 99 INEFQCECPTGFTGHLC 115
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 157 SNVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVC 214
+VDEC G+NPC++ G C + L F C C G+TG C+ NEC S+PCQN C
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQC---LQGYTGPRCEIDVNECVSNPCQNDATC 57
Query: 215 VDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQ 273
+D + C C+ G+ G +C++ C +SPCL+ CL C C + G+ CQ
Sbjct: 58 LDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 205 SSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQVCYCV 264
++PC++ G C++ ++ C CL G+TG C+I++ C ++PC N+A CL C C+
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 69
Query: 265 PDYHGNRCQYQYDECQITP 283
P Y G C+ DEC +P
Sbjct: 70 PGYEGVHCEVNTDECASSP 88
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
+ C C+ GY GVHC+ N DEC S+PC + G C+D I + C CP G+TG C+
Sbjct: 63 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 71/151 (47%), Gaps = 39/151 (25%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVD-- 160
D C NPC+N G C PG DG +++C CP G+T P+C S V+
Sbjct: 1 DICDPNPCENGGICL-----------PGLA----DG--SFSCECPDGFTDPNCSSVVEVA 43
Query: 161 ----------ECGSNPCQNNGTCH-------DLLNGFVCSCHPGFTGWTGSLCQSATNEC 203
C NPC N GTC D G+VC C GF G CQ NEC
Sbjct: 44 SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH---CQHNINEC 100
Query: 204 ESSPCQNGGVCVDLHAAYTCACLFGFTGRNC 234
E PC+NGG+C DL A Y+C C F GRNC
Sbjct: 101 EVEPCKNGGICTDLVANYSCECPGEFMGRNC 131
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 65 DECWSNPCHNGGSCIDGIA--AYNCSCPPGYTGPSCESNVD------------ECGSNPC 110
D C NPC NGG C+ G+A +++C CP G+T P+C S V+ C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 111 QNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNN 170
N GTC + + G D Y C CP G+ G C+ N++EC PC+N
Sbjct: 61 HNGGTCE------ISEAYRG------DTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNG 108
Query: 171 GTCHDLLNGFVCSCHPGFTGW 191
G C DL+ + C C F G
Sbjct: 109 GICTDLVANYSCECPGEFMGR 129
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 46 SYTCYCIDGYTGVHCQ------------TNWDECWSNPCHNGGSCI-------DGIAAYN 86
S++C C DG+T +C T+ C NPCHNGG+C D Y
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 87 CSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
C CP G+ G C+ N++EC PC+N G C DL+ + C C F G
Sbjct: 82 CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 160 DECGSNPCQNNGTCHDLL--NGFVCSCHPGFTGWT-GSLCQSATNE--------CESSPC 208
D C NPC+N G C L F C C GFT S+ + A++E C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 209 QNGGVCV-------DLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQVC 261
NGG C D Y C C GF G +C + CE PC N +C C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 262 YCVPDYHGNRCQYQ 275
C ++ G CQY+
Sbjct: 121 ECPGEFMGRNCQYK 134
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
Y C C G+ G+HCQ N +EC PC NGG C D +A Y+C CP + G +C+
Sbjct: 80 YVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 21/102 (20%)
Query: 203 CESSPCQNGGVCVD--LHAAYTCACLFGFTGRNCDIELKI------------CENSPCLN 248
C+ +PC+NGG+C+ +++C C GFT NC +++ C +PC N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 249 EALCLXXXXXQ-------VCYCVPDYHGNRCQYQYDECQITP 283
C + VC C ++G CQ+ +EC++ P
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP 104
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLNGF 123
D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+ N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 124 VCSCHPGFT 132
VCSC G+T
Sbjct: 103 VCSCARGYT 111
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 100
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 101 SVVCSCARGY 110
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 91
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 92 -------DQFCHEEQNSVVCSCARGYT 111
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 95
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 96 HEEQNSVVCSCARGYT 111
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLNGF 123
D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+ N
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 124 VCSCHPGFT 132
VCSC G+T
Sbjct: 108 VCSCARGYT 116
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 105
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 106 SVVCSCARGY 115
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 96
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 97 -------DQFCHEEQNSVVCSCARGYT 116
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 100
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 101 HEEQNSVVCSCARGYT 116
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 74/177 (41%), Gaps = 37/177 (20%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 131
C NGG C + C CP G+ GP CE + + C N G C + GF C C PGF
Sbjct: 155 CRNGGFCNE---RRICECPDGFHGPHCEKAL---CTPRCMNGGLC--VTPGF-CICPPGF 205
Query: 132 TG----------NCIDGIAAY---NCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLN 178
G C +G + C CPPG G CE + +C PC+N G C +
Sbjct: 206 YGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE--ISKC-PQPCRNGGKC---IG 259
Query: 179 GFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
C C G+ G LC CE C G C H C C G+ GR+C+
Sbjct: 260 KSKCKCS---KGYQGDLCSKPV--CEPG-CGAHGTC---HEPNKCQCQEGWHGRHCN 307
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLL 120
+ D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 121 NGFVCSCHPGFT 132
N VCSC G+T
Sbjct: 62 NSVVCSCARGYT 73
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 62
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 63 SVVCSCARGY 72
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 53
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 54 -------DQFCHEEQNSVVCSCARGYT 73
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 57
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 58 HEEQNSVVCSCARGYT 73
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLL 120
+ D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+
Sbjct: 1 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 121 NGFVCSCHPGFT 132
N VCSC G+T
Sbjct: 61 NSVVCSCARGYT 72
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 61
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 62 SVVCSCARGY 71
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 52
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 53 -------DQFCHEEQNSVVCSCARGYT 72
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 56
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 57 HEEQNSVVCSCARGYT 72
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 63 NWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLN 121
+ D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+ N
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 122 GFVCSCHPGFT 132
VCSC G+T
Sbjct: 61 SVVCSCARGYT 71
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 60
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 61 SVVCSCARGY 70
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 51
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 52 -------DQFCHEEQNSVVCSCARGYT 71
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 55
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 56 HEEQNSVVCSCARGYT 71
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLNGF 123
D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+ N
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 124 VCSCHPGFT 132
VCSC G+T
Sbjct: 103 VCSCARGYT 111
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 100
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 101 SVVCSCARGY 110
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 91
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 92 -------DQFCHEEQNSVVCSCARGYT 111
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 95
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 96 HEEQNSVVCSCARGYT 111
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLNGF 123
D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+ N
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 124 VCSCHPGFT 132
VCSC G+T
Sbjct: 63 VCSCARGYT 71
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 60
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 61 SVVCSCARGY 70
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 51
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 52 -------DQFCHEEQNSVVCSCARGYT 71
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 55
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 56 HEEQNSVVCSCARGYT 71
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCS 126
C S PC + GSC D I Y C+C PGY G +CE +EC +P + +G H
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQH--------- 56
Query: 127 CHPGFTGNCIDGIAAYNCSCPPGY 150
C+ G +Y CSC GY
Sbjct: 57 -------FCLPGQESYTCSCAQGY 73
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNEC---ESSPCQNGGVCVDLH 218
C S PC +NG+C D + G+ C+C PG+ GS C+ A NEC + CQ+ C+
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGY---EGSNCELAKNECHPERTDGCQH--FCLPGQ 62
Query: 219 AAYTCACLFGF 229
+YTC+C G+
Sbjct: 63 ESYTCSCAQGY 73
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNG---FVCSCHPGF 188
G+C D I Y C+C PGY G +CE +EC +P + +G H L G + CSC G+
Sbjct: 17 GSCQDSIWGYTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESYTCSCAQGY 73
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGG---SCIDGIAAYNCSCPPGY 93
YTC C GY G +C+ +EC +P G C+ G +Y CSC GY
Sbjct: 26 YTCTCSPGYEGSNCELAKNEC--HPERTDGCQHFCLPGQESYTCSCAQGY 73
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 203 CESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKIC 241
C S PC + G C D YTC C G+ G NC++ C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLL 120
+ D+C ++PC N G C DG+ Y C+C G+ G +CE + C + + CH+
Sbjct: 2 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 61
Query: 121 NGFVCSCHPGFT 132
VCSC G+T
Sbjct: 62 ASVVCSCARGYT 73
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C D YTC CL GF G+NC++ K+C +N C + C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQA 62
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 63 SVVCSCARGY 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C D L + C+C GF G +T LC +C+ C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 57
Query: 215 VDLHAAYTCACLFGFT 230
+ A+ C+C G+T
Sbjct: 58 HEEQASVVCSCARGYT 73
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C D L + C+C GF G NC +T C + +C
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 53
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ VCSC G+T
Sbjct: 54 -------DQFCHEEQASVVCSCARGYT 73
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLL 120
+ D+C ++PC N G C G+ Y C+C G+ G +CE + C + + CH+
Sbjct: 1 KDGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ 60
Query: 121 NGFVCSCHPGFT 132
N VCSC G+T
Sbjct: 61 NSVVCSCARGYT 72
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI-ELKIC--ENSPCLNEALCLXXXX 257
++CE+SPCQN G C YTC CL GF G+NC++ K+C +N C + C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEEQN 61
Query: 258 XQVCYCVPDY 267
VC C Y
Sbjct: 62 SVVCSCARGY 71
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
D+C ++PCQN G C L + C+C GF G NC +T C + +C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGK--------NCEL---FTRKLCSLDNGDC 52
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFT 189
+ CH+ N VCSC G+T
Sbjct: 53 -------DQFCHEEQNSVVCSCARGYT 72
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----WTGSLCQSATNECESSPCQNGGVC 214
D+C ++PCQN G C L + C+C GF G +T LC +C+ C
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-------FC 56
Query: 215 VDLHAAYTCACLFGFT 230
+ + C+C G+T
Sbjct: 57 HEEQNSVVCSCARGYT 72
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLL 120
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYC 102
Query: 121 NGFV-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
+ C CH G++ + A SC P P
Sbjct: 103 SDHTGTKRSCRCHEGYS------LLADGVSCTPTVEYP 134
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLL 120
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYC 102
Query: 121 NGFV-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
+ C CH G++ + A SC P P
Sbjct: 103 SDHTGTKRSCRCHEGYS------LLADGVSCTPTVEYP 134
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLL 120
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYC 102
Query: 121 NGFV-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
+ C CH G++ + A SC P P
Sbjct: 103 SDHTGTKRSCRCHEGYS------LLADGVSCTPTVEYP 134
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLL 120
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYC 102
Query: 121 NGFV-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
+ C CH G++ + A SC P P
Sbjct: 103 SDHTGTKRSCRCHEGYS------LLADGVSCTPTVEYP 134
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 78
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLL 120
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYC 61
Query: 121 NGFV-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
+ C CH G++ + A SC P P
Sbjct: 62 SDHTGTKRSCRCHEGYS------LLADGVSCTPTVEYP 93
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 41
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 4 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 38
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 9 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE 104
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 6 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLLNGF 123
D+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C +
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDH 58
Query: 124 V-----CSCHPGFTGNCIDGIAAYNCSCPPGYTGP 153
C CH G++ + A SC P P
Sbjct: 59 TGTKRSCRCHEGYS------LLADGVSCTPTVEYP 87
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 35
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
D+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 32
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 3 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE-SNVDECG-SNPCQNNGTCHDL 119
+ DEC G CI+ +Y C CP GY E + DEC NPC NGTC ++
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTCKNV 61
Query: 120 LNGFVCSCHPGF 131
+ GF C+C GF
Sbjct: 62 IGGFECTCEEGF 73
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCE-SNVDECG-SNPCQNNGTCHDLLNGFVCSCHPGF 188
G CI+ +Y C CP GY E + DEC NPC NGTC +++ GF C+C GF
Sbjct: 17 GQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTCKNVIGGFECTCEEGF 73
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
D+C SNPC NGGSC D I +Y C CP G+ G +CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
++CES+PC NGG C D +Y C C FGF G+NC++
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
D+C SNPC N G+C D +N + C C GF G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
D+C SNPC N G+C D +N + C C GF G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 198 SATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
S ++C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESN 101
++ D+C S+PC NGGSC D + +Y C C P + G +CE++
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
S+ D+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 35
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQ 273
C +SPC N C +C+C+P + G C+
Sbjct: 6 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 202 ECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 34
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 66 ECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLLNGFV 124
+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDHT 58
Query: 125 -----CSCHPGFT 132
C CH G++
Sbjct: 59 GTKRSCRCHEGYS 71
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 161 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGR 31
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 202 ECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+C SSPCQNGG C D +Y C CL F GRNC+
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 34
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 66 ECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLLNGFV 124
+C S+PC NGGSC D + +Y C C P + G +CE++ D+ C N NG C +
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD--QLICVNENGGCEQYCSDHT 58
Query: 125 -----CSCHPGFT 132
C CH G++
Sbjct: 59 GTKRSCRCHEGYS 71
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 161 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
+C S+PCQN G+C D L ++C C P F G
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGR 31
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQYQYDE 278
C +SPC N C +C+C+P + G C+ D+
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 63 NWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
+ +EC SNPC N +C+D I + C C PGY G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
+V+EC SNPCQN+ TC D + F C C PG+ G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
+V+EC SNPCQN+ TC D + F C C PG+ G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 200 TNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
NEC S+PCQN C+D + C C+ G+ G C+I
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 30/111 (27%)
Query: 49 CYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGI--AAYNCSCPPGYTGPSCESNVDECG 106
C C G+ G++C D+C +P C+ GI + C C + G C+ +++ CG
Sbjct: 85 CRCQYGWQGLYC----DKCIPHP-----GCVHGICNEPWQCLCETNWGGQLCDKDLNYCG 135
Query: 107 SN-PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
++ PC N GTC + G Y CSCP GY+GP+CE
Sbjct: 136 THQPCLNGGTCSNT------------------GPDKYQCSCPEGYSGPNCE 168
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSN-PCHNGGSCID-GIAAYNCSCPPGYTGPSCE 99
+ C C + G C + + C ++ PC NGG+C + G Y CSCP GY+GP+CE
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 143 NCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNE 202
+C C G+ G C D+C +P +G C++ + C C T W G LC N
Sbjct: 84 DCRCQYGWQGLYC----DKCIPHPGCVHGICNEP---WQCLCE---TNWGGQLCDKDLNY 133
Query: 203 CES-SPCQNGGVCVDLHA-AYTCACLFGFTGRNCDI 236
C + PC NGG C + Y C+C G++G NC+I
Sbjct: 134 CGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 26/167 (15%)
Query: 115 TCHDLLNGFVCSCHPGFTGNCIDGIAAYNC------SCPPGYTGPSCESNVDECGSNPCQ 168
TC D GF C+ F D Y C +C G+ GP C + G +P
Sbjct: 20 TCDDYYYGFGCN---KFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSP-- 74
Query: 169 NNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFG 228
+G+C L G C C GW G C ++C P G+C + + C C
Sbjct: 75 KHGSCK--LPG-DCRCQ---YGWQGLYC----DKCIPHPGCVHGIC---NEPWQCLCETN 121
Query: 229 FTGRNCDIELKIC-ENSPCLNEALCLXXXXXQV-CYCVPDYHGNRCQ 273
+ G+ CD +L C + PCLN C + C C Y G C+
Sbjct: 122 WGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIE 237
++CE +PC NGG+C D +Y C C GF G+NC+++
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
D+C NPC NGG C D I +Y C C G+ G +CE
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
D+C NPC N G C D +N + C C GF G
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG 79
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
+ D+C +PC N G C DGI Y C+C G+ G +CE
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
++CE PC N G C D YTC C GF G+NC+
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 121 NGFVCSCHPGFT-GNCIDGIAAYNCSCPPGYTGPSCE 156
+G C HP G+C DGI Y C+C G+ G +CE
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
+ D+C +PC N G C D + + C+C GF G
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGK 35
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
+ D+C +PC N G C D + + C+C GF G
Sbjct: 1 KDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEG 34
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQY 274
CE PCLN+ C C C + G C++
Sbjct: 6 CEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEF 39
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 58 VHCQTNWDE-CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
HCQ + C +NPC +GG C++ C CP GYTGP C+ +
Sbjct: 38 AHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDT 83
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 199 ATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIE 237
A+ C ++PC +GG C+++ C C G+TG CD++
Sbjct: 44 ASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIE 237
++CE +PC NGG+C +Y C C GF G+NC+++
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
D+C NPC NGG C I +Y C C G+ G +CE
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
D+C NPC N G C +N + C C GF G
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEG 79
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 159 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGV 213
+ ECG+N C NNG C+DL G+ C C GF C+ +EC+ P +
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQL 346
Query: 214 CVDLHAAYTCACLFGF 229
CV+L Y C C GF
Sbjct: 347 CVNLEGGYKCQCEEGF 362
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 102 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
+ ECG+N C NNG C+DL G+ C C GF +A C
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ-----LVAQRRC------------ 331
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 188
++DEC +P + C +L G+ C C GF
Sbjct: 332 EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 362
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
D+C +PC N G C GI Y C+C G+ G +CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELK 239
++CE PC N G C YTC C GF G+NC+ +
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 121 NGFVCSCHPGF-TGNCIDGIAAYNCSCPPGYTGPSCE 156
+G C HP G+C GI Y C+C G+ G +CE
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
D+C +PC N G C + + C+C GF G
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGK 79
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
D+C +PC N G C + + C+C GF G
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEG 78
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 159 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGV 213
+ ECG+N C NNG C+DL G+ C C GF C+ +EC+ P +
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQL 364
Query: 214 CVDLHAAYTCACLFGF 229
CV+L Y C C GF
Sbjct: 365 CVNLEGGYKCQCEEGF 380
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 102 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
+ ECG+N C NNG C+DL G+ C C GF +A C
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ-----LVAQRRC------------ 349
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 188
++DEC +P + C +L G+ C C GF
Sbjct: 350 EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 380
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 159 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGV 213
+ ECG+N C NNG C+DL G+ C C GF C+ +EC+ P +
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQL 92
Query: 214 CVDLHAAYTCACLFGF 229
CV+L Y C C GF
Sbjct: 93 CVNLEGGYKCQCEEGF 108
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 102 VDECGSNPC-QNNG----TCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
+ ECG+N C NNG C+DL G+ C C GF +A C
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ-----LVAQRRC------------ 77
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 188
++DEC +P + C +L G+ C C GF
Sbjct: 78 EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 108
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 66 ECWSNPC--HNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCH 117
EC +N C +NGG C D Y C CP G+ CE ++DEC +P + C
Sbjct: 37 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCV 94
Query: 118 DLLNGFVCSCHPGF 131
+L G+ C C GF
Sbjct: 95 NLEGGYKCQCEEGF 108
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
+ D+C +PC N G C GI Y C+C G+ G +CE
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELK 239
++CE PC N G C YTC C GF G+NC+ +
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 121 NGFVCSCHPGF-TGNCIDGIAAYNCSCPPGYTGPSCE 156
+G C HP G+C GI Y C+C G+ G +CE
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
+ D+C +PC N G C + + C+C GF G
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGK 35
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
+ D+C +PC N G C + + C+C GF G
Sbjct: 1 KDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEG 34
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 241 CENSPCLNEALCLXXXXXQVCYCVPDYHGNRCQY 274
CE PCLN+ C C C + G C++
Sbjct: 6 CEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEF 39
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 76 GSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNC 135
G+CIDGI +++C C G+ G C+ V N +NG C T C
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSF--LNCSLDNGGC---------------THYC 61
Query: 136 IDGIAAYNCSCPPGYT 151
++ + CSC PGY
Sbjct: 62 LEEVGWRRCSCAPGYK 77
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVD--ECGSNPCQNNGTCHDLLNGFVCSCHPGFT 189
G CIDGI +++C C G+ G C+ V C + C + + CSC PG+
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 77
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 205 SSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKI----CENSPCLNEALCLXXXXXQV 260
+S C G C+D +++C C G+ GR C E+ +N C + CL +
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRR 69
Query: 261 CYCVPDYH 268
C C P Y
Sbjct: 70 CSCAPGYK 77
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 153 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQS 198
PSC + C SNPC+NNG C D N +VC C TG+ G C+
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSG--TGYLGRSCER 656
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCES 100
C SNPC N G C DG Y C C GY G SCE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER 656
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 96 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSC 127
PSC + C SNPC+NNG C D N +VC C
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 203 CESSPCQNGGVCVDLHAAYTCACL-FGFTGRNCDIELKIC 241
C S+PC+N G+C D Y C C G+ GR+C+ E +
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 153 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQS 198
PSC + C SNPC+NNG C D N +VC C TG+ G C+
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSG--TGYLGRSCER 656
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCES 100
C SNPC N G C DG Y C C GY G SCE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER 656
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 96 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSC 127
PSC + C SNPC+NNG C D N +VC C
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 203 CESSPCQNGGVCVDLHAAYTCACL-FGFTGRNCDIELKIC 241
C S+PC+N G+C D Y C C G+ GR+C+ E +
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 153 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQS 198
PSC + C SNPC+NNG C D N +VC C TG+ G C+
Sbjct: 387 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSG--TGYLGRSCER 431
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCES 100
C SNPC N G C DG Y C C GY G SCE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER 431
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 19/63 (30%)
Query: 96 PSCESNVDE-CGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPS 154
PSC + C SNPC+NNG C D N +VC C GY G S
Sbjct: 387 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC------------------SGTGYLGRS 428
Query: 155 CES 157
CE
Sbjct: 429 CER 431
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 203 CESSPCQNGGVCVDLHAAYTCACL-FGFTGRNCDIELKIC 241
C S+PC+N G+C D Y C C G+ GR+C+ E +
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 436
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE 104
C G C++ I Y CSC PG+ GP CE D+
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVDE 161
G C++ I Y CSC PG+ GP CE D+
Sbjct: 131 GECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C C G C + + + CSC+PGF G
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYG 150
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 194 SLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+LC +A+ C+ C G C++ YTC+C GF G C+
Sbjct: 115 ALCYTAS--CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C C G C++ I Y CSC PG+ GP CE
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCE 156
G C++ I Y CSC PG+ GP CE
Sbjct: 13 GECLETIGNYTCSCYPGFYGPECE 36
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
C C G C + + + CSC+PGF G
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C C G C + + + CSC+PGF G
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 200 TNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
T C+ C G C++ YTC+C GF G C+
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 76 GSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNC 135
G+CI GI +++C C G+ G C+ V N +NG C T C
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSF--LNCSLDNGGC---------------THYC 68
Query: 136 IDGIAAYNCSCPPGYT 151
++ + CSC PGY
Sbjct: 69 LEEVGWRRCSCAPGYK 84
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCH----DLLNGFVCSCHPGF 188
G CI GI +++C C G+ G C+ V N +NG C + + CSC PG+
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSF--LNCSLDNGGCTHYCLEEVGWRRCSCAPGY 83
Query: 189 T 189
Sbjct: 84 K 84
>pdb|1Z1Y|A Chain A, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
pdb|1Z1Y|B Chain B, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
Length = 186
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 39 PIFAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCI----DGIAAYNCSCPPGYT 94
P A + Y C CI+GYT D C C G CI I + CSC G
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 95 -GPSCESNVDECGSNPCQ-----NNGTCHDLLNGFVCSCHPGFT 132
P E G CQ +N C ++ + C C GFT
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFT 169
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN-----CIDGIAAYNCSCPPGYTGPS 154
+++DEC S+PC NG C + F+C C T + CI+ I +C
Sbjct: 2 ADIDECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIETIKG---TCWQTVIDGR 57
Query: 155 CESNVD--ECGSNPCQNNGTCHDLLNGFVCS-------CHPGFTGWTGSLCQSATNECES 205
CE N++ S C + G G C+ C G++ G+ C+ +ECE
Sbjct: 58 CEININGATLKSQCCSSLGAAW----GSPCTLCQVDPICGKGYSRIKGTQCED-IDECEV 112
Query: 206 SP--CQNGGVCVDLHAAYTCACLFGFT 230
P C+N G+CV+ ++ C C G T
Sbjct: 113 FPGVCKN-GLCVNTRGSFKCQCPSGMT 138
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 163 GSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
G+N C NNG C+DL G+ C C GF C+ +EC+ P +CV+L
Sbjct: 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNL 85
Query: 218 HAAYTCACLFGF 229
Y C C GF
Sbjct: 86 EGGYKCQCEEGF 97
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 30 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 84
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 85 LEGGYKCQCEEGF 97
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 163 GSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
G+N C NNG C+DL G+ C C GF C+ +EC+ P +CV+L
Sbjct: 28 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNL 85
Query: 218 HAAYTCACLFGF 229
Y C C GF
Sbjct: 86 EGGYKCQCEEGF 97
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 30 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 84
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 85 LEGGYKCQCEEGF 97
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 35/139 (25%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESN----------VDEC-GSNPCQNNGTCHDLL 120
C N G C + C CPPG+ G +CE + C G C++ C L
Sbjct: 205 CMNNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LP 260
Query: 121 NGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQ-NNGTCHDLLNG 179
+ + CSC G+ G N +C PG+ GP C+ C NNG D G
Sbjct: 261 DPYGCSCATGWKG------LQCNEACHPGFYGPDCKLR--------CSCNNGEMCDRFQG 306
Query: 180 FVCSCHPGFTGWTGSLCQS 198
+CS GW G C+
Sbjct: 307 CLCS-----PGWQGLQCER 320
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 163 GSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
G+N C NNG C+DL G+ C C GF C+ +EC+ P +CV+L
Sbjct: 4 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNL 61
Query: 218 HAAYTCACLFGF 229
Y C C GF
Sbjct: 62 EGGYKCQCEEGF 73
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 6 NECLDN---NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 60
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 61 LEGGYKCQCEEGF 73
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 43 VPSSYTCYCIDGY-TGVHCQTN---WDECWSNPCH-NGGSCIDGIAAYNCSCPPGYT 94
P + C C +GY +G N DEC +P GG C + +Y C CPPG+
Sbjct: 21 TPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 132 TGNCIDGIAAYNCSCPPGY-TGPSCESN---VDECGSNPCQ-NNGTCHDLLNGFVCSCHP 186
G C++ + C C GY +G N +DEC +P G CH+ + C C P
Sbjct: 15 RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 187 G 187
G
Sbjct: 75 G 75
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 158 NVDECGSNPCQ-NNGTCHDLLNGFVCSCHPGF-TGWTGSLCQSATNECESSPCQ-NGGVC 214
++DEC +P G C + F C C G+ +G+ +EC+ P GGVC
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 215 VDLHAAYTCAC 225
+ +Y C C
Sbjct: 62 HNTEGSYRCEC 72
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 163 GSNPC-QNNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
G+N C NNG C+DL G+ C C GF C+ +EC+ P +CV+L
Sbjct: 4 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNL 61
Query: 218 HAAYTCACLFGFT 230
Y C C GF
Sbjct: 62 EGGYKCQCEEGFQ 74
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 6 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 60
Query: 119 LLNGFVCSCHPGFT 132
L G+ C C GF
Sbjct: 61 LEGGYKCQCEEGFQ 74
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
C + C G C++ I Y C C PG++G CE V+
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVD 160
G C++ I Y C C PG++G CE V+
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
C + C +G C + +N + C C PGF+G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C + C +G C + +N + C C PGF+G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 194 SLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+LC +A C ++ C G CV+ YTC C GF+G C+
Sbjct: 115 ALCYTAA--CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 112 NNGTCHDLLNG--FVCSCHP---GFTGNCIDGIAAYNCSCPPGYTGPSCE 156
N+ CH L + SC P G C++ I Y C+C GY GP C+
Sbjct: 105 NDDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C G C++ I Y C+C GY GP C+
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 34/135 (25%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDL-----LNGFVCS 126
C SC++ A C C PG+ S+ E + P + TC D+ L+ C
Sbjct: 9 CPQDSSCVNATA---CRCNPGF------SSFSEIITTPME---TCDDINECATLSKVSC- 55
Query: 127 CHPGFTGNCIDGIAAYNCSCPPGY---TGPSCESN--------VDEC--GSNPCQNNGTC 173
G +C + +Y+C C PGY +G N VDEC G + C ++ C
Sbjct: 56 ---GKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 174 HDLLNGFVCSCHPGF 188
+ + + C C PG+
Sbjct: 113 FNTVGSYSCRCRPGW 127
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
C + C G C++ I Y C C PG++G CE V
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNV 159
G C++ I Y C C PG++G CE V
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
C + C +G C + +N + C C PGF+G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C + C +G C + +N + C C PGF+G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 194 SLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+LC +A C ++ C G CV+ YTC C GF+G C+
Sbjct: 115 ALCYTAA--CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 35 ALIIPIFAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGI--AAYNCSCPPG 92
+ + P+ C+C G H C C NGG+C + + + C CP G
Sbjct: 20 SWLRPVLRSNRVEYCWCNSGRAQCH-SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEG 78
Query: 93 YTGPSCE 99
+ G SCE
Sbjct: 79 FAGKSCE 85
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 159 VDECGSNPCQNNGTCHDLL--NGFVCSCHPGFTGWTGSLCQSAT 200
V C C N GTC L + FVC C GF G + + AT
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRAT 91
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 169 NNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
NNG C+DL G+ C C GF C+ +EC+ P +CV+L Y C
Sbjct: 8 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNLEGGYKCQ 65
Query: 225 CLFGF 229
C GF
Sbjct: 66 CEEGF 70
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 3 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 57
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 58 LEGGYKCQCEEGF 70
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 169 NNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
NNG C+DL G+ C C GF C+ +EC+ P +CV+L Y C
Sbjct: 8 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNLEGGYKCQ 65
Query: 225 CLFGF 229
C GF
Sbjct: 66 CEEGF 70
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 3 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 57
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 58 LEGGYKCQCEEGF 70
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 55/169 (32%), Gaps = 36/169 (21%)
Query: 40 IFAVPSSYTCYCIDGYTGVHCQTN--------WDECWSNPCHNGGSCIDG-----IAAYN 86
+ + + + C C +G VH N E C G CI+ + Y
Sbjct: 18 LVQMSNHFKCMCNEGL--VHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMYK 75
Query: 87 CSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSC 146
C C GYT +D C C +G C + I + CSC
Sbjct: 76 CGCIEGYTLKEDTCVLDVCQYKNCGESGEC---------------IVEYLSEIQSAGCSC 120
Query: 147 PPGYT-GPSCESNVDECGSNPCQ-----NNGTCHDLLNGFVCSCHPGFT 189
G P E + G CQ +N C ++ + C C GFT
Sbjct: 121 AIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFT 169
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 16/136 (11%)
Query: 107 SNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDG-----IAAYNCSCPPGYTGPSCESNVDE 161
N C+ C G C G G CI+ + Y C C GYT +D
Sbjct: 38 ENTCEEKNECKKETLGKAC----GEFGQCIENPDPAQVNMYKCGCIEGYTLKEDTCVLDV 93
Query: 162 CGSNPCQNNGTC----HDLLNGFVCSCHPGFT---GWTGSLCQSATNECESSPCQNGGVC 214
C C +G C + CSC G ++ C+ + VC
Sbjct: 94 CQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVC 153
Query: 215 VDLHAAYTCACLFGFT 230
++ Y C C+ GFT
Sbjct: 154 KNVEGVYKCQCMEGFT 169
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 169 NNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECES----SPCQNGGVCVD-----LHA 219
NG + N F C C+ G + + C+ NEC+ C G C++
Sbjct: 14 KNGQLVQMSNHFKCMCNEGLVHLSENTCEEK-NECKKETLGKACGEFGQCIENPDPAQVN 72
Query: 220 AYTCACLFGFTGRNCDIELKICENSPCLNEALCLXXXXXQV 260
Y C C+ G+T + L +C+ C C+ ++
Sbjct: 73 MYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEI 113
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C+ GSCI+G C C PGY+GP+C+
Sbjct: 192 CYGHGSCINGT---KCICDPGYSGPTCK 216
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C+ GSCI+G C C PGY+GP+C+
Sbjct: 192 CYGHGSCINGT---KCICDPGYSGPTCK 216
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 169 NNG----TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
NNG C+DL G+ C C GF C+ +EC+ P +CV+L Y C
Sbjct: 6 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDECQD-PDTCSQLCVNLEGGYKCQ 63
Query: 225 CLFGF 229
C GF
Sbjct: 64 CEEGF 68
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 65 DECWSNPCHNGG---SCIDGIAAYNCSCPPGY---TGPSCESNVDECGSNPCQNNGTCHD 118
+EC N NGG C D Y C CP G+ CE ++DEC +P + C +
Sbjct: 1 NECLDN---NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDEC-QDPDTCSQLCVN 55
Query: 119 LLNGFVCSCHPGF 131
L G+ C C GF
Sbjct: 56 LEGGYKCQCEEGF 68
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 208 CQNGGVCVDLHA--AYTCACLFGFTGRNCD 235
C NGGVC+ + + +YTC C+ G++G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 68 WSNPCHNGGSC--IDGIAAYNCSCPPGYTGPSCE 99
+ C NGG C I+ + +Y C+C GY+G CE
Sbjct: 10 YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCE 43
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 208 CQNGGVCVDLHA--AYTCACLFGFTGRNCDIE 237
C NGGVC+ + + +YTC C+ G++G C
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 72 CHNGGSC--IDGIAAYNCSCPPGYTGPSCESN 101
C NGG C I+ + +Y C+C GY+G C++
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 72 CHNGGSC-----IDGIAAYNCSCPPGYTGPSCESNV 102
C NGG C + + Y C C PG+TG C NV
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 72 CHNGGSC-----IDGIAAYNCSCPPGYTGPSCESNV 102
C NGG C + + Y C C PG+TG C NV
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|3LAQ|A Chain A, Structure-Based Engineering Of Species Selectivity In The
Upa-Upar Interaction
pdb|3LAQ|B Chain B, Structure-Based Engineering Of Species Selectivity In The
Upa-Upar Interaction
Length = 134
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 208 CQNGGVCVD---LHAAYTCACLFGFTGRNCDIE 237
CQNGGVCV C+C F G +C+I+
Sbjct: 14 CQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEID 46
>pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 217
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 87 CSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSC 146
C C GY G +CE G + + G+C N +CS G+C+ G + S
Sbjct: 109 CRCDTGYIGKNCECQTQ--GRSSQELEGSCRKDNNSIICS----GLGDCVCGQCLCHTSD 162
Query: 147 PPGYT--GPSCESNVDECGSNPCQNNGTCHDLLNGF----VCSCHPGFTG 190
PG G CE + C N C G C CHPGF G
Sbjct: 163 VPGKLIYGQYCECDTINCER---YNGQVCGGPGRGLCFCGKCRCHPGFEG 209
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 105 CGSNPC--QNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC 144
C SNPC + GTC + +G++C C+ G+ + +DG C
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGYRIS-LDGTGNVTC 54
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 162 CGSNPC--QNNGTCHDLLNGFVCSCHPGF 188
C SNPC + GTC + +G++C C+ G+
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 92 GYTGPSCESNVDECGSNPCQN---NGTCHDLLNGFVCSCHPGFT 132
G+ ++DEC P + + CH+ L GF CSC G+
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 149 GYTGPSCESNVDECGSNPCQN---NGTCHDLLNGFVCSCHPGFT 189
G+ ++DEC P + + CH+ L GF CSC G+
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.518
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,632,533
Number of Sequences: 62578
Number of extensions: 497378
Number of successful extensions: 1649
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 717
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)