RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7015
(284 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 154 bits (391), Expect = 1e-47
Identities = 56/150 (37%), Positives = 74/150 (49%), Gaps = 22/150 (14%)
Query: 63 NWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNG 122
+ +NPC + G CI+ + ++ C C GYTGP CE +V+EC SNPCQN+ TC D +
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGE 65
Query: 123 FVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVC 182
+ C C PGY G CE N DEC S+PC +NG C D +N F C
Sbjct: 66 -------------------FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQC 106
Query: 183 SCHPGFTGWTGSLCQSATNECESSPCQNGG 212
C G+TG LCQ + +
Sbjct: 107 ECPT---GFTGHLCQVDLHHILDAQKMVWN 133
Score = 144 bits (365), Expect = 1e-43
Identities = 57/150 (38%), Positives = 78/150 (52%), Gaps = 24/150 (16%)
Query: 101 NVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESN 158
+VDEC G+NPC++ G C + L + C C GYTGP CE +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGS-------------------FECQCLQGYTGPRCEID 44
Query: 159 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLH 218
V+EC SNPCQN+ TC D + F C C PG + G C+ T+EC SSPC + G C+D
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPG---YEGVHCEVNTDECASSPCLHNGRCLDKI 101
Query: 219 AAYTCACLFGFTGRNCDIELKICENSPCLN 248
+ C C GFTG C ++L ++ +
Sbjct: 102 NEFQCECPTGFTGHLCQVDLHHILDAQKMV 131
Score = 140 bits (354), Expect = 5e-42
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
S+ C C+ GYTG C+ + +EC SNPC N +C+D I + C C PGY G CE N D
Sbjct: 25 LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD 84
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECG 163
EC S+PC +NG C D +N + C CP G+TG C+ ++
Sbjct: 85 ECASSPCLHNGRCLDKINE-------------------FQCECPTGFTGHLCQVDLHHIL 125
Query: 164 SNPCQNNG 171
Sbjct: 126 DAQKMVWN 133
Score = 119 bits (300), Expect = 6e-34
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 158 NVDEC--GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCV 215
+VDEC G+NPC++ G C + L F C C G +TG C+ NEC S+PCQN C+
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQG---YTGPRCEIDVNECVSNPCQNDATCL 60
Query: 216 DLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQ 275
D + C C+ G+ G +C++ C +SPCL+ CL++ E C C + G+ CQ
Sbjct: 61 DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD 120
Query: 276 YDECQITP 283
Sbjct: 121 LHHILDAQ 128
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 146 bits (369), Expect = 2e-43
Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 22/186 (11%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE- 104
+ + D+C ++PC N G C DG+ Y C+C G+ G +CE +
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL 83
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGS 164
C + + CH+ N CSC GYT G
Sbjct: 84 CSLDNGDCDQFCHEEQNS-------------------VVCSCARGYTLADNGKACIPTGP 124
Query: 165 NPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
PC + + G S+ + + P +N +D +
Sbjct: 125 YPCGKQTLERRKRSVAQATSSSGEAP--DSITWKPYDAADLDPTENPFDLLDFNQTQPER 182
Query: 225 CLFGFT 230
T
Sbjct: 183 GDNNLT 188
Score = 113 bits (285), Expect = 5e-31
Identities = 25/151 (16%), Positives = 38/151 (25%), Gaps = 19/151 (12%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDE-CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
YTC C++G+ G +C+ + C + C + + CSC GYT
Sbjct: 60 LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
G PC + + G D
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAP------------------DSITWKPYDAA 161
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTG 193
+P +N D T G
Sbjct: 162 DLDPTENPFDLLDFNQTQPERGDNNLTRIVG 192
Score = 111 bits (279), Expect = 4e-30
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 5/154 (3%)
Query: 132 TGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
+ + + D+C ++PCQN G C D L + C+C G +
Sbjct: 15 ETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEG---F 71
Query: 192 TGSLCQSATNE-CESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEA 250
G C+ T + C C + + C+C G+T + PC +
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQT 131
Query: 251 LCLEEEEEQVCYCVPDYHGNR-CQYQYDECQITP 283
L + + YD + P
Sbjct: 132 LERRKRSVAQATSSSGEAPDSITWKPYDAADLDP 165
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 136 bits (344), Expect = 2e-40
Identities = 52/154 (33%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 65 DECWSNPCHNGGSCIDGIAA--YNCSCPPGYTGPSCESNVD------------ECGSNPC 110
D C NPC NGG C+ G+A ++C CP G+T P+C S V+ C NPC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 111 QNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNN 170
N GTC D Y C CP G+ G C+ N++EC PC+N
Sbjct: 61 HNGGTCEIS------------EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNG 108
Query: 171 GTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECE 204
G C DL+ + C C F G CQ
Sbjct: 109 GICTDLVANYSCECPGEF---MGRNCQYKGGGHH 139
Score = 111 bits (280), Expect = 7e-31
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 38/141 (26%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWD------------ECWSNPCHNGGSCI-------DGIAA 84
S++C C DG+T +C + + C NPCHNGG+C D
Sbjct: 20 DGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIG 79
Query: 85 YNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC 144
Y C CP G+ G C+ N++EC PC+N G C DL+ Y+C
Sbjct: 80 YVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVAN-------------------YSC 120
Query: 145 SCPPGYTGPSCESNVDECGSN 165
CP + G +C+ +
Sbjct: 121 ECPGEFMGRNCQYKGGGHHHH 141
Score = 104 bits (261), Expect = 4e-28
Identities = 42/139 (30%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 160 DECGSNPCQNNGTCHDLL--NGFVCSCHPGFTG---------WTGSLCQSATNECESSPC 208
D C NPC+N G C L F C C GFT + ++ C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 209 QNGGVCV-------DLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVC 261
NGG C D Y C C GF G +C + CE PC N +C + C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 262 YCVPDYHGNRCQYQYDECQ 280
C ++ G CQY+
Sbjct: 121 ECPGEFMGRNCQYKGGGHH 139
Score = 30.5 bits (69), Expect = 0.29
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 241 CENSPCLNEALCLEEEEEQ--VCYCVPDYHGNRCQYQYDECQITP 283
C+ +PC N +CL + C C + C +
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEE 47
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 128 bits (325), Expect = 1e-37
Identities = 31/152 (20%), Positives = 47/152 (30%), Gaps = 23/152 (15%)
Query: 64 WDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGF 123
C + + + D+C ++PCQN G C D L
Sbjct: 4 KKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGE- 62
Query: 124 VCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE-CGSNPCQNNGTCHDLLNGFVC 182
Y C+C G+ G +CE + C + + CH+ N VC
Sbjct: 63 ------------------YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVC 104
Query: 183 SCHPGFTGWTGSLCQSATNECESSPCQNGGVC 214
SC G+T + A PC +
Sbjct: 105 SCAR---GYTLADNGKACIPTGPYPCGKQTLE 133
Score = 122 bits (308), Expect = 3e-35
Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE- 104
+ + D+C ++PC N G C DG+ Y C+C G+ G +CE +
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL 83
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGS 164
C + + CH+ N CSC GYT G
Sbjct: 84 CSLDNGDCDQFCHEEQNS-------------------VVCSCARGYTLADNGKACIPTGP 124
Query: 165 NPCQNNGTC 173
PC
Sbjct: 125 YPCGKQTLE 133
Score = 111 bits (281), Expect = 4e-31
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 23/147 (15%)
Query: 107 SNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP 166
C ++ + + D+C ++P
Sbjct: 9 ERECMEETCSYEEARE-------------------VFEDSDKTNEFWNKYKDGDQCETSP 49
Query: 167 CQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNE-CESSPCQNGGVCVDLHAAYTCAC 225
CQN G C D L + C+C G + G C+ T + C C + + C+C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEG---FEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106
Query: 226 LFGFTGRNCDIELKICENSPCLNEALC 252
G+T + PC + L
Sbjct: 107 ARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 99.7 bits (249), Expect = 2e-26
Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 164 SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTC 223
C ++ W ++CE+SPCQN G C D YTC
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWN---KYKDGDQCETSPCQNQGKCKDGLGEYTC 65
Query: 224 ACLFGFTGRNCDIEL-KICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDECQIT 282
CL GF G+NC++ K+C + C EE+ VC C Y
Sbjct: 66 TCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 283 P 283
P
Sbjct: 126 P 126
Score = 88.1 bits (219), Expect = 6e-22
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDE-CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
YTC C++G+ G +C+ + C + C + + CSC GYT
Sbjct: 60 LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Query: 103 DECGSNPCQNNGTC 116
G PC
Sbjct: 120 IPTGPYPCGKQTLE 133
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 127 bits (320), Expect = 7e-35
Identities = 57/218 (26%), Positives = 75/218 (34%), Gaps = 40/218 (18%)
Query: 45 SSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE 104
++ + CQ C NGG C + C CP G+ GP CE
Sbjct: 131 NTILKTPQNAIFFKTCQQA---ECPGGCRNGGFCNER---RICECPDGFHGPHCEKA--- 181
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG----------NCIDG---IAAYNCSCPPGYT 151
+ C N G C + C C PGF G C +G C CPPG
Sbjct: 182 LCTPRCMNGGLC---VTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLE 238
Query: 152 GPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNG 211
G CE + +C PC+N G C C C G + G LC E C
Sbjct: 239 GEQCE--ISKC-PQPCRNGGKCI---GKSKCKCSKG---YQGDLCSKPVCEP---GCGAH 286
Query: 212 GVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNE 249
G C + C C G+ GR+C+ + +
Sbjct: 287 GTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHH 321
Score = 121 bits (304), Expect = 2e-32
Identities = 58/251 (23%), Positives = 85/251 (33%), Gaps = 41/251 (16%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
+ G C D + + + +C+
Sbjct: 95 TVPHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQQA---E 150
Query: 106 GSNPCQNNGTCHDLLNGFVCSCHPGFTG----------NCIDG---IAAYNCSCPPGYTG 152
C+N G C++ +C C GF G C++G + C CPPG+ G
Sbjct: 151 CPGGCRNGGFCNE---RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYG 207
Query: 153 PSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGG 212
+C+ S C N GTC C C P G G C+ ++C PC+NGG
Sbjct: 208 VNCD---KANCSTTCFNGGTC---FYPGKCICPP---GLEGEQCE--ISKC-PQPCRNGG 255
Query: 213 VCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRC 272
C+ C C G+ G C +CE C C E + C C +HG C
Sbjct: 256 KCIG---KSKCKCSKGYQGDLCSKP--VCEP-GCGAHGTCHEPNK---CQCQEGWHGRHC 306
Query: 273 QYQYDECQITP 283
+Y+ I
Sbjct: 307 NKRYEASLIGT 317
Score = 114 bits (287), Expect = 4e-30
Identities = 52/181 (28%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 45 SSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE 104
C C DG+ G HC+ + C NGG C+ C CPPG+ G +C+
Sbjct: 163 ERRICECPDGFHGPHCEKA---LCTPRCMNGGLCVTP---GFCICPPGFYGVNCD---KA 213
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGN----------CIDG---IAAYNCSCPPGYT 151
S C N GTC C C PG G C +G I C C GY
Sbjct: 214 NCSTTCFNGGTC---FYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQ 270
Query: 152 GPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNG 211
G C V E C +GTCH+ C C G W G C +
Sbjct: 271 GDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEG---WHGRHCNKRYEASLIGTKHHH 321
Query: 212 G 212
Sbjct: 322 H 322
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 117 bits (295), Expect = 4e-33
Identities = 27/127 (21%), Positives = 36/127 (28%), Gaps = 19/127 (14%)
Query: 49 CYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSN 108
+ D+C NPC NGG C D I +Y C C G+ G +CE + N
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 109 PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQ 168
+ CSC GY + + PC
Sbjct: 93 GRCKQFCKTGADSK-------------------VLCSCTTGYRLAPDQKSCKPAVPFPCG 133
Query: 169 NNGTCHD 175
H
Sbjct: 134 RVSVSHS 140
Score = 114 bits (287), Expect = 6e-32
Identities = 29/151 (19%), Positives = 42/151 (27%), Gaps = 27/151 (17%)
Query: 66 ECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVC 125
EC C + + + D+C NPC N G C D +N
Sbjct: 17 ECIEEKCSFEEAR-----EVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINS--- 68
Query: 126 SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCH 185
Y C C G+ G +CE + N + +CSC
Sbjct: 69 ----------------YECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCT 112
Query: 186 PGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
G+ + Q + PC V
Sbjct: 113 TGY---RLAPDQKSCKPAVPFPCGRVSVSHS 140
Score = 103 bits (260), Expect = 7e-28
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 9/126 (7%)
Query: 133 GNCIDGIAAYNCSC------PPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHP 186
CI+ ++ + + D+C NPC N G C D +N + C C
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQV 75
Query: 187 GFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPC 246
G + G C+ + + C+C G+ K PC
Sbjct: 76 G---FEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
Query: 247 LNEALC 252
++
Sbjct: 133 GRVSVS 138
Score = 81.6 bits (202), Expect = 2e-19
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 161 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAA 220
EC C + W ++CE +PC NGG+C D +
Sbjct: 17 ECIEEKCSFEEAREVF-----ENTEKTNEFWK---QYVDGDQCEPNPCLNGGLCKDDINS 68
Query: 221 YTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDECQ 280
Y C C GF G+NC+++ + + + + +C C Y Q
Sbjct: 69 YECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAV 128
Query: 281 ITP 283
P
Sbjct: 129 PFP 131
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 116 bits (293), Expect = 2e-32
Identities = 49/194 (25%), Positives = 68/194 (35%), Gaps = 41/194 (21%)
Query: 45 SSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE 104
C D Y G C C G D N +C G+ GP C +
Sbjct: 15 GRSAVTCDDYYYGFGCNK---FCRPRDDFFGHYACDQN--GNKTCMEGWMGPECNRAI-- 67
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGS 164
C +G+C +C C G+ G C D+C
Sbjct: 68 CRQGCSPKHGSCKL----------------------PGDCRCQYGWQGLYC----DKCIP 101
Query: 165 NPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECES-SPCQNGGVCVDLHA-AYT 222
+P +G C++ + C C W G LC N C + PC NGG C + Y
Sbjct: 102 HPGCVHGICNE---PWQCLCETN---WGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQ 155
Query: 223 CACLFGFTGRNCDI 236
C+C G++G NC+I
Sbjct: 156 CSCPEGYSGPNCEI 169
Score = 78.6 bits (194), Expect = 5e-18
Identities = 32/175 (18%), Positives = 44/175 (25%), Gaps = 42/175 (24%)
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGS 164
GS+ ++G+ +C Y G C C
Sbjct: 2 RGSHHHHHHGSIEG----------------------RSAVTCDDYYYGFGCN---KFCRP 36
Query: 165 NPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
D +C GW G C C G C C
Sbjct: 37 RDDFFGHYACD--QNGNKTCME---GWMGPECN--RAICRQGCSPKHGSCKL---PGDCR 86
Query: 225 CLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDEC 279
C +G+ G CD C P +C E C C ++ G C + C
Sbjct: 87 CQYGWQGLYCD----KCIPHPGCVHGIC---NEPWQCLCETNWGGQLCDKDLNYC 134
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 115 bits (290), Expect = 3e-32
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPC 110
++ D+C S+PC NGGSC D + +Y C C P + G +CE++ D+
Sbjct: 34 AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 111 QNNGTCHDLLNGFVCSCHPGFTGNCIDGI-AAYNCSCPPGYTGPSCESNVDECGSNPCQN 169
+N G C D +C C GY+ + + PC
Sbjct: 94 ENGGCEQ----------------YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGK 137
Query: 170 NGTC 173
Sbjct: 138 IPIL 141
Score = 104 bits (261), Expect = 4e-28
Identities = 31/153 (20%), Positives = 46/153 (30%), Gaps = 31/153 (20%)
Query: 66 ECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVC 125
EC C + S+ D+C S+PCQN G+C D L
Sbjct: 16 ECKEEQCSFEEAR-----EIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQS--- 67
Query: 126 SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCH----DLLNGFV 181
Y C C P + G +CE++ D+ +N G
Sbjct: 68 ----------------YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRS 111
Query: 182 CSCHPGFTGWTGSLCQSATNECESSPCQNGGVC 214
C CH G+ + + PC +
Sbjct: 112 CRCHEGY---SLLADGVSCTPTVEYPCGKIPIL 141
Score = 95.9 bits (239), Expect = 7e-25
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 135 CIDGIAAYNCSC------PPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 188
C + ++ + S+ D+C S+PCQN G+C D L ++C C P
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLP-- 74
Query: 189 TGWTGSLCQSATNECESSPCQNGG---VCVDL-HAAYTCACLFGFTGRNCDIELKICENS 244
+ G C++ ++ +NGG C D +C C G++ +
Sbjct: 75 -AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 133
Query: 245 PCLNEALC 252
PC +
Sbjct: 134 PCGKIPIL 141
Score = 79.3 bits (196), Expect = 1e-18
Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 161 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAA 220
EC C + + S ++C SSPCQNGG C D +
Sbjct: 16 ECKEEQCSFEEAR------EIFKDAER--TKLFWISYSDGDQCASSPCQNGGSCKDQLQS 67
Query: 221 YTCACLFGFTGRNCDIELKICENSPCLN---EALCLEEEEEQ-VCYCVPDYHGNRCQYQY 276
Y C CL F GRNC+ N E C + + C C Y
Sbjct: 68 YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Query: 277 DECQITP 283
P
Sbjct: 128 TPTVEYP 134
Score = 40.8 bits (96), Expect = 8e-05
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 43 VPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSC 78
+ +C C +GY+ + + PC
Sbjct: 106 TGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 87.8 bits (218), Expect = 4e-22
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 22/122 (18%)
Query: 57 GVHCQTN-WDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD--ECGSNPCQNN 113
G C + ++ C G+CIDGI +++C C G+ G C+ V C +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 114 GTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTC 173
C + + CSC PGY PC
Sbjct: 66 HYCLEEVGW-------------------RRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKR 106
Query: 174 HD 175
+
Sbjct: 107 ME 108
Score = 76.3 bits (188), Expect = 9e-18
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 152 GPSCESN-VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQN 210
G C ++ ++ C +GTC D + F C C G+ G S C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS-FLNCSLDNGGC 64
Query: 211 GGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQV 260
C++ C+C G+ + ++ PC +E++ +
Sbjct: 65 THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHL 114
Score = 74.4 bits (183), Expect = 4e-17
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 46 SYTCYCIDGYTGVHCQT--NWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
S++C C G+ G CQ ++ C + C++ + CSC PGY
Sbjct: 34 SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCH 93
Query: 104 ECGSNPCQNNGTCHD 118
PC +
Sbjct: 94 PAVKFPCGRPWKRME 108
Score = 60.5 bits (147), Expect = 5e-12
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNC--DIELKICENSPCLNEALCLEEEEE 258
+S C G C+D +++C C G+ GR C ++ C CLEE
Sbjct: 15 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGW 74
Query: 259 QVCYCVPDYHGNRCQYQYDEC 279
+ C C P Y Q
Sbjct: 75 RRCSCAPGYKLGDDLLQCHPA 95
Score = 37.8 bits (88), Expect = 6e-04
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCID 80
C C GY PC ++
Sbjct: 72 VGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 88.2 bits (218), Expect = 4e-20
Identities = 40/243 (16%), Positives = 54/243 (22%), Gaps = 33/243 (13%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECG 106
C G C C N G C + C CPPG+ G +CE +
Sbjct: 185 IVRRCEAQKWGPEC-----NHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHT 237
Query: 107 SNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP 166
CS G Y CSC G+ G C P
Sbjct: 238 FGRTCKER----------CSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGP 287
Query: 167 -------CQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQ-SATNECESSPCQNGGVCVDLH 218
C N C C C P GW G C+
Sbjct: 288 DCKLRCSCNNGEMCD---RFQGCLCSP---GWQGLQCEREGIPRMTPKIVDLPDHIEVNS 341
Query: 219 AAYTCACLF-GFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYD 277
+ C G+ + + + L+ + +
Sbjct: 342 GKFNPICKASGWPLPTNEEMTLVKPDGTVLH-PKDFNHTDHFSVAIFTIHRILPPDSGVW 400
Query: 278 ECQ 280
C
Sbjct: 401 VCS 403
Score = 63.2 bits (153), Expect = 2e-11
Identities = 43/224 (19%), Positives = 61/224 (27%), Gaps = 47/224 (20%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 131
+ GS I + + P + D + G F
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQ-DAGVYSARYIGGNL----------FTSAF 181
Query: 132 TGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
T C GP C C NNG CH+ + C C P G+
Sbjct: 182 TRLI-------VRRCEAQKWGPEC-----NHLCTACMNNGVCHE--DTGECICPP---GF 224
Query: 192 TGSLCQSATNECE-----SSPCQNGGVCVD----LHAAYTCACLFGFTGRNCDIELKIC- 241
G C+ A C C L Y C+C G+ G C+
Sbjct: 225 MGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGF 284
Query: 242 ------ENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDEC 279
C N +C + Q C C P + G +C+ +
Sbjct: 285 YGPDCKLRCSCNNGEMC---DRFQGCLCSPGWQGLQCEREGIPR 325
Score = 43.5 bits (102), Expect = 4e-05
Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 46 SYTCYCIDGYTGVHCQTNW-DECWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCESNVD 103
C C G+ G+ C+ +N C G+ P+ E
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEM-T 362
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSC 127
+ + + + F +
Sbjct: 363 LVKPDGTVLHPKDFNHTDHFSVAI 386
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 80.1 bits (198), Expect = 1e-18
Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFV 124
+EC G+C++ +Y C CPP + + S C +
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTA 63
Query: 125 CSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSC 184
CS G + SC ++ + PC+ + +C
Sbjct: 64 CSNEIGVGVS-----------------KASCCCSLGKAWGTPCEMCPAVNTSEYKILCPG 106
Query: 185 HPGFTGWTGSLCQSATNECESSPCQ-NGGVCVDLHAAYTCACLFGFT----GRNCD 235
GF ++ +EC+ P GG C++ ++ C C G+ R CD
Sbjct: 107 GEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162
Score = 72.0 bits (177), Expect = 9e-16
Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 19/150 (12%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGY--TGPSCESN 101
P SY C C + + + S C+ CS G + SC +
Sbjct: 21 PGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCS 80
Query: 102 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE 161
+ + PC+ + +C GF N E ++DE
Sbjct: 81 LGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN---------------PITVILE-DIDE 124
Query: 162 CGSNPCQ-NNGTCHDLLNGFVCSCHPGFTG 190
C P G C + F C C G+
Sbjct: 125 CQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 59.7 bits (145), Expect = 2e-11
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 46 SYTCYCIDGY--TGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESN-- 101
C G + C + + W PC + C G+
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 102 -VDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFTGN 134
+DEC P G C + F C C G+ N
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Score = 52.4 bits (126), Expect = 1e-08
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 8/132 (6%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
++V+EC +G C + ++C C P F + + + S C
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFEL---NPTRVGCVDTRSGNCYLDIRPRG 57
Query: 217 LHAAYTCACLFGF--TGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQY 274
+ C+ G + +C L +PC E + +C + N
Sbjct: 58 DNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV 117
Query: 275 QY---DECQITP 283
DECQ P
Sbjct: 118 ILEDIDECQELP 129
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 75.2 bits (185), Expect = 1e-17
Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
SY C D T + Q + + W P C C G V C
Sbjct: 1 SYQVICRDEKTQMIYQQH--QSWLRPVLRSNRV------EYCWCNSGRAQC-HSVPVKSC 51
Query: 106 GSNPCQNNGTCHDLL--NGFVCSCHPGFTG 133
C N GTC L + FVC C GF G
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
Score = 64.0 bits (156), Expect = 1e-13
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 115 TCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCH 174
C D + H + + C C G V C C N GTC
Sbjct: 5 ICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQ 63
Query: 175 DLL--NGFVCSCHPGFTG 190
L + FVC C GF G
Sbjct: 64 QALYFSDFVCQCPEGFAG 81
Score = 54.8 bits (132), Expect = 3e-10
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 141 AYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSAT 200
+Y C T + + + P + C C+ G
Sbjct: 1 SYQVICRDEKTQMIYQQH--QSWLRPVLRSNRV------EYCWCNSGRAQ----CHSVPV 48
Query: 201 NECESSPCQNGGVCVDLHAA--YTCACLFGFTGRNCDIE 237
C C NGG C + C C GF G++C+I+
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 37.8 bits (88), Expect = 4e-04
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 214 CVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQ--VCYCVPDYHGNR 271
+ + C C G + +K C C N C + VC C + G
Sbjct: 25 VLRSNRVEYCWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKS 83
Query: 272 CQ 273
C+
Sbjct: 84 CE 85
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 73.5 bits (181), Expect = 2e-16
Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 11/136 (8%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHD------ 118
DEC S+PC NG C + ++ C C T ++ E C
Sbjct: 5 DECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININ 63
Query: 119 -LLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES--NVDECGSNPCQ-NNGTCH 174
C G + + C GY+ ++DEC P NG C
Sbjct: 64 GATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCV 123
Query: 175 DLLNGFVCSCHPGFTG 190
+ F C C G T
Sbjct: 124 NTRGSFKCQCPSGMTL 139
Score = 52.7 bits (127), Expect = 5e-09
Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 48/159 (30%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNV 159
+++DEC S+PC N G C + ++ C C T ++
Sbjct: 2 ADIDECESSPCIN--------------------GVCKNSPGSFICECSSESTLDPTKTIC 41
Query: 160 DECGSNPCQNNGTCHDLLN--------------------------GFVCSCHPGFTGWTG 193
E C C G++ G
Sbjct: 42 IETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKG 101
Query: 194 SLCQSATNECESSPCQ-NGGVCVDLHAAYTCACLFGFTG 231
+ C+ +ECE P G+CV+ ++ C C G T
Sbjct: 102 TQCED-IDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 42.0 bits (99), Expect = 3e-05
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
+++DEC S+PC N G C + F+C C T ++ E C +
Sbjct: 2 ADIDECESSPCIN-GVCKNSPGSFICECSSESTL---DPTKTICIETIKGTCWQTVID-- 55
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQY 276
C + + C Y +
Sbjct: 56 ----GRCEININGATLKSQCCSSLGAAWGSPC------TLCQVDPICGKGYSRIKGTQCE 105
Query: 277 D--ECQITP 283
D EC++ P
Sbjct: 106 DIDECEVFP 114
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 75.5 bits (186), Expect = 6e-16
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLLNGF 123
C S PC + GSC D I Y C+C PGY G +CE +EC C +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 124 VCSCHPGFTGNCIDGIAAYNCSCPPG 149
CSC G+ + C G
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 67.8 bits (166), Expect = 3e-13
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
C S PC +NG+C D I Y C+C PGY G +CE +EC
Sbjct: 6 SPCISQPCLHNGSC-------------------QDSIWGYTCTCSPGYEGSNCELAKNEC 46
Query: 163 GSNPCQN-NGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGG 212
C + CSC G+ ++C +
Sbjct: 47 HPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 97
Score = 65.9 bits (161), Expect = 1e-12
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 160 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGG---VCVD 216
C S PC +NG+C D + G+ C+C PG+ G C+ A NEC P + G C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSN---CELAKNEC--HPERTDGCQHFCLP 60
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPC 246
+YTC+C G+ + + C
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 65.9 bits (161), Expect = 1e-12
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLN-EALCLEEEEEQ 259
+ C S PC + G C D YTC C G+ G NC++ C + CL +E
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 260 VCYCVPDYHGNRCQYQYDECQITPR 284
C C Y Q
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 50.5 bits (121), Expect = 2e-07
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGS-CIDGIAAYNCSCPPGYTGPSCESNVDE 104
YTC C GY G +C+ +EC C+ G +Y CSC GY
Sbjct: 25 GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVP 84
Query: 105 CGSNPC 110
C
Sbjct: 85 HDQCAC 90
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 74.7 bits (183), Expect = 2e-15
Identities = 37/210 (17%), Positives = 52/210 (24%), Gaps = 43/210 (20%)
Query: 49 CYCIDGYTGVHCQTNWDEC-----WSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
G +C+ + C G C G C C PG+ G +C+
Sbjct: 501 DVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQCERT 556
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECG 163
G CS G C C C GY P C+
Sbjct: 557 TEGCLNP----------RRVECSGR----GRCRCN----VCECHSGYQLPLCQEC--PGC 596
Query: 164 SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSA-TNECESSPCQNGGVCVDLHAAYT 222
+PC +C + G G C +A S+ G C + +
Sbjct: 597 PSPCGKYISCAE-----CLKFEKG---PFGKNCSAACPGLQLSNNPVKGRTCKE---RDS 645
Query: 223 CACLFGFTGRNCDIELKICENSPCLNEALC 252
C +T D C
Sbjct: 646 EGCWVAYTLEQQDGM--DRYLIYVDESREC 673
Score = 70.1 bits (171), Expect = 1e-13
Identities = 45/258 (17%), Positives = 60/258 (23%), Gaps = 47/258 (18%)
Query: 43 VPSSYTCYCIDGYTGVHCQT--------------NWDECWSNPCHNGGSCIDGIAAYNCS 88
+ +Y +C +G T + + I + +
Sbjct: 356 LKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 89 CPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-NCIDGIAAYNCSCP 147
C + C G +C C G+ G NC C
Sbjct: 416 TVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GICRCDTGYIGKNC-------ECQTQ 464
Query: 148 PGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG---WTGSLCQSATNECE 204
+ S + S C G C C CH G C+ T CE
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCECDTINCE 520
Query: 205 ---SSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIEL-----KICENSPCLNEALCLEEE 256
C G + C C GF G C E C C
Sbjct: 521 RYNGQVCGGPGRGL--CFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC---- 574
Query: 257 EEQVCYCVPDYHGNRCQY 274
VC C Y CQ
Sbjct: 575 RCNVCECHSGYQLPLCQE 592
Score = 65.1 bits (158), Expect = 5e-12
Identities = 31/180 (17%), Positives = 40/180 (22%), Gaps = 44/180 (24%)
Query: 43 VPSSYTCYCIDGYTGVHCQTNWDEC-----WSNPCHNGGSCIDGIAAYNCSCPPGYTGPS 97
+ C C G+ G CQ C G C C C GY P
Sbjct: 534 LCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN----VCECHSGYQLPL 589
Query: 98 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
C+ +PC +C A G G +C +
Sbjct: 590 CQEC--PGCPSPCGKYISC------------------------AECLKFEKGPFGKNCSA 623
Query: 158 NV-DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
SN TC C +T Q + CV
Sbjct: 624 ACPGLQLSNNPVKGRTCK---ERDSEGCWVAYTL-----EQQDGMDRYLIYVDESRECVA 675
Score = 45.1 bits (106), Expect = 1e-05
Identities = 26/164 (15%), Positives = 40/164 (24%), Gaps = 14/164 (8%)
Query: 110 CQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN 169
+N L + C G T C V + Q
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPR-----GDCDGVQINVPITFQVKVTATECIQE 401
Query: 170 NGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGF 229
L + C+ + S C G C C G+
Sbjct: 402 QSFVIRALG---FTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GICRCDTGY 454
Query: 230 TGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQ 273
G+NC E + S E C ++ +C + D +C
Sbjct: 455 IGKNC--ECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCL 496
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 73.7 bits (180), Expect = 5e-15
Identities = 33/177 (18%), Positives = 49/177 (27%), Gaps = 38/177 (21%)
Query: 59 HCQTNWDECWSNPCHNGGS-CIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCH 117
+ ++ C+ + C+ + C C TGP C P G+
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYL 344
Query: 118 DLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLL 177
+ G +C P + +NV + CQN GTCH
Sbjct: 345 PIPKGAANACIPSISS---------------------IGTNVCDNELLHCQNGGTCH--- 380
Query: 178 NGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNC 234
N C C +TG CE C+ G C G +
Sbjct: 381 NNVRCLCPAAYTG----------ILCEKLRCEEAGSCGSDSGQGAPPH--GTHHHHH 425
Score = 68.3 bits (166), Expect = 3e-13
Identities = 32/172 (18%), Positives = 48/172 (27%), Gaps = 34/172 (19%)
Query: 98 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
S++ G C + T C+ + C C TGP C
Sbjct: 287 AISDIKVRGRCKCNLHATV------------------CVYDNSKLTCECEHNTTGPDCGK 328
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
P G+ + G +C P + + + E CQNGG C +
Sbjct: 329 CKKNYQGRPWSP-GSYLPIPKGAANACIPSISS-----IGTNVCDNELLHCQNGGTCHN- 381
Query: 218 HAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHG 269
C C +TG CE C C + + +H
Sbjct: 382 --NVRCLCPAAYTGIL-------CEKLRCEEAGSCGSDSGQGAPPHGTHHHH 424
Score = 67.9 bits (165), Expect = 3e-13
Identities = 30/144 (20%), Positives = 38/144 (26%), Gaps = 32/144 (22%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECG 106
TC C TG C P GS + +C P + +E
Sbjct: 313 LTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPKGAANACIPSISSIGTNVCDNELL 371
Query: 107 SNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP 166
CQN GTCH+ C CP YTG CE +
Sbjct: 372 --HCQNGGTCHN----------------------NVRCLCPAAYTGILCE----KL---R 400
Query: 167 CQNNGTCHDLLNGFVCSCHPGFTG 190
C+ G+C
Sbjct: 401 CEEAGSCGSDSGQGAPPHGTHHHH 424
Score = 51.8 bits (123), Expect = 9e-08
Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
P CI + + +E C NGG+C + C CP YTG CE
Sbjct: 347 PKGAANACIPSISSIGTNVCDNEL--LHCQNGGTCHNN---VRCLCPAAYTGILCE---- 397
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
+ C+ G+C
Sbjct: 398 KL---RCEEAGSCGSDSGQGAPPHGTHHHH 424
Score = 39.8 bits (92), Expect = 6e-04
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 196 CQSATNECESSPCQN-GGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLE 254
S C VCV ++ TC C TG +C K + P L
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYLP 345
Query: 255 EEEEQVCYCVPDYHGNRCQYQYDEC 279
+ C+P +E
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNEL 370
Score = 32.1 bits (72), Expect = 0.21
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSC 98
+ C C YTG+ C+ + C GSC + P G
Sbjct: 382 NVRCLCPAAYTGILCE----KL---RCEEAGSCGSDSGQ--GAPPHGTHHHHH 425
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 74.0 bits (181), Expect = 6e-15
Identities = 45/245 (18%), Positives = 59/245 (24%), Gaps = 62/245 (25%)
Query: 48 TCYCIDGYTGVHCQTNWDEC------------WSNPCHNGGSCIDGIAAYNCSCPPGYTG 95
C C G+ G C+ + ++ C G C+ G C C G
Sbjct: 459 VCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSDFG 514
Query: 96 PSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSC 155
EC C G +CS H G C G +C C +TG C
Sbjct: 515 KITGKYC-ECDDFSCVRY-------KGEMCSGH----GQCSCG----DCLCDSDWTGYYC 558
Query: 156 ESNVDECG-----SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQN 210
C G C C C G G C+ C
Sbjct: 559 NCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQ--PGSYGDTCE--KCPTCPDACTF 610
Query: 211 GGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGN 270
C C G D N C +E ++
Sbjct: 611 KKEC--------VECKKFDRGALHDEN---TCNRYCRDEIESVK------ELKDTGKDAV 653
Query: 271 RCQYQ 275
C Y+
Sbjct: 654 NCTYK 658
Score = 71.7 bits (175), Expect = 3e-14
Identities = 35/193 (18%), Positives = 43/193 (22%), Gaps = 14/193 (7%)
Query: 49 CYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSN 108
I G D + C P G+ +C
Sbjct: 377 NEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA 436
Query: 109 PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC-GSNPC 167
N + G C G C C PS + G C
Sbjct: 437 CQAQAEPNSHRCNNGNGTFECG-VCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC 495
Query: 168 QNNGTCHDLLNGFVCSCHPGFTG-WTGSLCQSATNECESS---PCQNGGVCVDLHAAYTC 223
G C C CH G TG C+ C C G C C
Sbjct: 496 SQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDC 547
Query: 224 ACLFGFTGRNCDI 236
C +TG C+
Sbjct: 548 LCDSDWTGYYCNC 560
Score = 28.5 bits (63), Expect = 2.8
Identities = 9/62 (14%), Positives = 13/62 (20%), Gaps = 10/62 (16%)
Query: 48 TCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSC-ESNVDECG 106
C G N + C + G +C N D+C
Sbjct: 614 CVECKKFDRGALHDEN---TCNRYCRDEIES------VKELKDTGKDAVNCTYKNEDDCV 664
Query: 107 SN 108
Sbjct: 665 VR 666
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 66.4 bits (162), Expect = 9e-14
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 25/153 (16%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESN--------VDEC---GSNPCQNN 113
C + C SC++ C C PG++ S ++EC C
Sbjct: 3 RGC-ARWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKF 58
Query: 114 GTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC--GSNPCQNNG 171
C + + C C PG+ + +C+ +VDEC G + C ++
Sbjct: 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNE-------SENTCQ-DVDECSSGQHQCDSST 110
Query: 172 TCHDLLNGFVCSCHPGFTGWTGSLCQSATNECE 204
C + + + C C PG+ G CE
Sbjct: 111 VCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
Score = 55.6 bits (134), Expect = 5e-10
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVD 160
+ C + C + +C N C C+PGF+ S +C+ +++
Sbjct: 1 DSRGC-ARWCPQDSSCV---NATACRCNPGFSSF----------SEIITTPMETCD-DIN 45
Query: 161 EC---GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSAT--------NECES--SP 207
EC C C + + C C PG+ +G+ +EC S
Sbjct: 46 ECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQ 105
Query: 208 CQNGGVCVDLHAAYTCACLFGFTGRNCD 235
C + VC + +Y+C C G+ R+
Sbjct: 106 CDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 35.6 bits (82), Expect = 0.006
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 29/103 (28%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
SY C C GY V + + +C D VDEC
Sbjct: 67 SYDCVCSPGYEPVSGAKTFKN------ESENTCQD---------------------VDEC 99
Query: 106 --GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSC 146
G + C ++ C + + + C C PG+ + C
Sbjct: 100 SSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 60.6 bits (148), Expect = 7e-13
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 63 NWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
+ D+C SNPC NGGSC D I +Y C CP G+ G +CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 55.9 bits (136), Expect = 4e-11
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
++CES+PC NGG C D +Y C C FGF G+NC++
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 54.0 bits (131), Expect = 2e-10
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-NC 135
+ D+C SNPC N G+C D +N + C C GF G NC
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 53.6 bits (130), Expect = 3e-10
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
+ D+C SNPC N G+C D +N + C C GF G
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 241 CENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQ 273
CE++PCLN C ++ C+C + G C+
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 26.7 bits (60), Expect = 1.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 46 SYTCYCIDGYTGVHCQ 61
SY C+C G+ G +C+
Sbjct: 23 SYECWCPFGFEGKNCE 38
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 64.9 bits (157), Expect = 7e-12
Identities = 29/170 (17%), Positives = 45/170 (26%), Gaps = 30/170 (17%)
Query: 20 FQPYLWSGLPDSDWLALIIPIFAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCI 79
F GLP A + + + + G + P +G +
Sbjct: 120 FSGLFVGGLPPELRAAALKLTL-----ASVREREPFKGWIRDVRVQSSLALPVDSGEVKL 174
Query: 80 DGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGI 139
PP G S +E C N G C + + VC C
Sbjct: 175 -------DDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS----------- 216
Query: 140 AAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT 189
G+ G C +E + + C+DL + S T
Sbjct: 217 -------RTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEIT 259
Score = 61.8 bits (149), Expect = 7e-11
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 15/162 (9%)
Query: 101 NVDECGSNPCQNNGTCHDLLNG---FVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
+D+ + + D+ FV P + + + G +
Sbjct: 99 FIDQVEAKWVEVKSKRRDMTVFSGLFVGGL-PPELRAAALKLTLASVREREPFKGWIRDV 157
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDL 217
V + P + D A E E C NGGVC +
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGS----------PCEAGEEGEGGVCLNGGVCSVV 207
Query: 218 HAAYTCACLF-GFTGRNCDIELKICENSPCLNEALCLEEEEE 258
C C GF G++C + + +E C + +
Sbjct: 208 DDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQN 249
Score = 55.6 bits (133), Expect = 7e-09
Identities = 34/284 (11%), Positives = 59/284 (20%), Gaps = 72/284 (25%)
Query: 43 VPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCESN 101
G +E C NGG C C C G+ G C
Sbjct: 169 SGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQG 228
Query: 102 VDECGSNPCQNNGTCHDLLNGFVCS------------------CHPGFTGNCI-----DG 138
+E + + C+DL + S H G + + + +G
Sbjct: 229 KEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNG 288
Query: 139 IAAYN------------------------CSCPPGYTGPSCESNVDECGSNPCQNNGTCH 174
+ +VD +
Sbjct: 289 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT 348
Query: 175 DL-LNGFVCSC-HPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGR 232
L + F P GS + CL +
Sbjct: 349 MLGSDDFFYVGGSPSTADLPGSPVSN----------------------NFMGCLKEVVYK 386
Query: 233 NCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQY 276
N D+ L++ + + + + C V +
Sbjct: 387 NNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPE 430
Score = 52.2 bits (124), Expect = 8e-08
Identities = 25/147 (17%), Positives = 35/147 (23%), Gaps = 14/147 (9%)
Query: 131 FTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
G D G C SNPC+NNG C D N +VC C TG
Sbjct: 591 IDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSG--TG 648
Query: 191 WTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEA 250
+ G C+ D+ L+
Sbjct: 649 YLGRSCEREATVLSYDGSMF----------MKIQLPVVMHTEAEDVSLRFRSQRA--YGI 696
Query: 251 LCLEEEEEQVCYCVPDYHGNRCQYQYD 277
L + + R + +
Sbjct: 697 LMATTSRDSADTLRLELDAGRVKLTVN 723
Score = 48.7 bits (115), Expect = 1e-06
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 149 GYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPC 208
G CE C + C N G C +GF C C T ++G LC S
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSM--TSFSGPLCNDPGTTYIFSKG 1064
Query: 209 Q 209
Sbjct: 1065 G 1065
Score = 47.9 bits (113), Expect = 2e-06
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCS 126
C + +G D G C SNPC+NNG C D N +VC
Sbjct: 585 CIRDLFIDG-QSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCD 643
Query: 127 CHP-GFTGNCIDGIAAYNCSCPPGY 150
C G+ G + A +
Sbjct: 644 CSGTGYLGRSCEREATVLSYDGSMF 668
Score = 47.5 bits (112), Expect = 3e-06
Identities = 35/238 (14%), Positives = 51/238 (21%), Gaps = 22/238 (9%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPP-GYTGPSCESNV 102
G + C SNPC N G C DG Y C C GY G SCE
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
Query: 103 DECGSNPCQNNG-TCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGP-------- 153
+ +++ F GI S T
Sbjct: 659 TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRV 718
Query: 154 ----SCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQ 209
+ + + N+ H + T Q+ T + +
Sbjct: 719 KLTVNLGKGPETLFAGYNLNDNEWHTV----RVVRRGKSLKLTVDDQQAMTGQMAGDHTR 774
Query: 210 ----NGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYC 263
N + Y + F G + E
Sbjct: 775 LEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGF 832
Score = 46.8 bits (110), Expect = 5e-06
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 92 GYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSC-HPGFTG-NCIDGIAAYNCSCPPG 149
G CE C + C N G C +GF C C F+G C D Y S G
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 150 Y 150
Sbjct: 1067 Q 1067
Score = 46.4 bits (109), Expect = 7e-06
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 13/150 (8%)
Query: 136 IDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSL 195
ID + A + S + G P L F GW +
Sbjct: 100 IDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLAS--VREREPFKGW---I 154
Query: 196 CQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEE 255
+ P +G V +D + + + E CLN +C
Sbjct: 155 RDVRVQSSLALPVDSGEVKLDDEPPNSGGG-------SPCEAGEEGEGGVCLNGGVCSVV 207
Query: 256 EEEQVCYC-VPDYHGNRCQYQYDECQITPR 284
+++ VC C + G C +E T +
Sbjct: 208 DDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Score = 45.6 bits (107), Expect = 1e-05
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 54 GYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCESNVDECGSNPCQN 112
G C+ C + C N G C+ ++C C ++GP C +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 113 NGTCHDLLN 121
T N
Sbjct: 1067 QITYKWPPN 1075
Score = 44.4 bits (104), Expect = 3e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 196 CQSATNECESSPCQNGGVCVDLHAAYTCAC-LFGFTGRNCDIELKICENSPC 246
C+ + C+ C N GVC+ ++C C + F+G C+ S
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 37.5 bits (86), Expect = 0.005
Identities = 13/70 (18%), Positives = 20/70 (28%)
Query: 211 GGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGN 270
G D+ G K C ++PC N +C + VC C +
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 271 RCQYQYDECQ 280
R +
Sbjct: 652 RSCEREATVL 661
Score = 33.7 bits (76), Expect = 0.075
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 228 GFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYC-VPDYHGNRCQYQYDECQITP 283
G R C+ C+ C N+ +CL++ + C C + + G C +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 1063
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 63.9 bits (155), Expect = 1e-11
Identities = 44/232 (18%), Positives = 71/232 (30%), Gaps = 30/232 (12%)
Query: 65 DECWSNPCHNGGSCID-GIAAYNC-SCPPGYT--GPSCESNVDECGSN-----PCQNNGT 115
D C SNPC G C +++C CP G+ G CE ++DEC
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPR 62
Query: 116 CHDLLNGFVC-SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC--GSNPCQNNGT 172
C + GF C C P + GN G T + C ++ C +
Sbjct: 63 CVNTQPGFHCLPCPPRYRGNQPVG-----VGLEAAKTEKQVCEPENPCKDKTHNCHKHAE 117
Query: 173 C----HDLLNGFVCSCHPGFTGWTGSLCQSA---TNECESSPCQNGGVCVDLHAAYTCAC 225
C H + C C G+ G + + + C +
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLP 177
Query: 226 LFGFTGRNCDIELKICENSPCLNEALCLEEEEEQV-----CYCVPDYHGNRC 272
G + D C++ + ++ + + D G+RC
Sbjct: 178 NSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRC 229
Score = 48.5 bits (115), Expect = 1e-06
Identities = 39/210 (18%), Positives = 57/210 (27%), Gaps = 45/210 (21%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC-SCPPGYT--GPSCE 156
++ D C SNPC C +G ++C CP G+ G CE
Sbjct: 1 ADPDGCLSNPCFPGAQCSSFPDGS------------------WSCGFCPVGFLGNGTHCE 42
Query: 157 SNVDECGSN-----PCQNNGTCHDLLNGFVC-SCHPGFTGWTGSLCQSATNECESSPCQN 210
++DEC C + GF C C P + G + E C+
Sbjct: 43 -DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP 101
Query: 211 GGVCVDLHA-----------------AYTCACLFGFTGRNCDIELKICENSPCLNEALCL 253
C D Y C C G+ G + +C
Sbjct: 102 ENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCA 161
Query: 254 EEEEEQVCYCVPDYHGNRCQYQYDECQITP 283
+ N Q +D+ I
Sbjct: 162 TNATYHCIKDNCPHLPNSGQEDFDKDGIGD 191
Score = 40.0 bits (93), Expect = 7e-04
Identities = 24/158 (15%), Positives = 31/158 (19%), Gaps = 21/158 (13%)
Query: 46 SYTCY-CIDGYTGVHCQTNWDECW----------------SNPCHNGGSCI----DGIAA 84
+ C C Y G E ++ CH CI
Sbjct: 69 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPM 128
Query: 85 YNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC 144
Y C C GY G D N C + N +
Sbjct: 129 YKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDG 188
Query: 145 SCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVC 182
+ DE + N D V
Sbjct: 189 IGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Score = 39.2 bits (91), Expect = 0.001
Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 25/174 (14%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
+ + + Q ++D+ + DG+ +C + + + D
Sbjct: 164 ATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD 223
Query: 104 ECGSNP-----CQNNGTCHDLLNGFVCSCHPGFTGN--------------------CIDG 138
E G N NG +C G+ DG
Sbjct: 224 EVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDG 283
Query: 139 IAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWT 192
+ + +CP + + + D G N D +C
Sbjct: 284 VGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQ 337
Score = 38.1 bits (88), Expect = 0.003
Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 20/168 (11%)
Query: 46 SYTCYCIDGYTGVHCQTNWDECWSNPCHNGG-SCIDGIAAYNCSCPPGYTGPSCESNVDE 104
C G D C + + DG+ + +CP + + + D
Sbjct: 247 GEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDL 306
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGN-----------------CIDGIAAYNCSCP 147
G N D +C N DG+ +C
Sbjct: 307 VGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCR 366
Query: 148 PGYTGPSCESNVDECG--SNPCQNNGTCHDLLNGFVCSCHPGFTGWTG 193
+ + + D G +N D+ + + T +
Sbjct: 367 LVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRN 414
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 58.9 bits (142), Expect = 2e-10
Identities = 29/182 (15%), Positives = 43/182 (23%), Gaps = 34/182 (18%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDE------CGSNPCQNNGTC---- 116
S ++GG + G YN P G+ + + + P + G
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGT 161
Query: 117 HDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE------CGSNPCQNN 170
N G + G YN P G+ G + + P
Sbjct: 162 RGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPG 221
Query: 171 GTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFT 230
G G A N +GG + Y GF
Sbjct: 222 GFW--------------MIGARNGQNVVALN----VASSDGGKTLAGTMIYNGEGPIGFR 263
Query: 231 GR 232
R
Sbjct: 264 AR 265
Score = 56.6 bits (136), Expect = 1e-09
Identities = 33/186 (17%), Positives = 47/186 (25%), Gaps = 34/186 (18%)
Query: 74 NGGSCIDGIAAYNCSCPPGYTGPSCESNVDE------CGSNPCQNNGTC----HDLLNGF 123
+GG + G YN P G+ G +N S P Q G D N
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIV 101
Query: 124 VCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE------CGSNPCQNNGTCHDLL 177
S G + G YN P G+ + + + P + G
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVW---- 157
Query: 178 NGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIE 237
V + +GG + Y GF G +
Sbjct: 158 ---VLGTRGK-----------QNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPD 203
Query: 238 LKICEN 243
EN
Sbjct: 204 TYTVEN 209
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 54.1 bits (131), Expect = 5e-10
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYT--GPSCESNVDECGSNPCQNNGTCHDLLNG 122
DEC G CI+ +Y C CP GY G C + DEC NGTC +++ G
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGNGTCKNVIGG 64
Query: 123 FVCSCHPGFTGN 134
F C+C GF
Sbjct: 65 FECTCEEGFEPG 76
Score = 51.8 bits (125), Expect = 3e-09
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 102 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE 161
+DEC +G C + + C C G+ G C + DE
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILA-----------------GNECV-DTDE 46
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQ 197
C NGTC +++ GF C+C GF C+
Sbjct: 47 CSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTCE 82
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 159 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLH 218
+DEC +G C + + C C G+ G+ C T+EC G C ++
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYIL-AGNECVD-TDECSVGNPCGNGTCKNVI 62
Query: 219 AAYTCACLFGFTG 231
+ C C GF
Sbjct: 63 GGFECTCEEGFEP 75
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 46 SYTCYCIDGYTGVHCQ-TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTG 95
SY C C GY + + DEC G+C + I + C+C G+
Sbjct: 25 SYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75
Score = 28.7 bits (65), Expect = 0.50
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD-IELKICENSPCLNEALCLEEEEEQ 259
+EC+ G C++ +Y C C FG+ + ++ C C
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGF 65
Query: 260 VCYCVPDYHGN 270
C C +
Sbjct: 66 ECTCEEGFEPG 76
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 56.9 bits (137), Expect = 2e-09
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 129 PGFTGNCIDGI--------AAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGF 180
GF G C+ + + G CE C + C N G C +GF
Sbjct: 148 EGFQG-CLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGF 206
Query: 181 VCSCHPGFTGWTGSLCQSATNECESSPCQN 210
C C T ++G LC S
Sbjct: 207 SCDCSM--TSFSGPLCNDPGTTYIFSKGGG 234
Score = 53.5 bits (128), Expect = 3e-08
Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 18/89 (20%)
Query: 90 PPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPG 149
G CE C + C N G C +GF C C
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCS------------------MTS 214
Query: 150 YTGPSCESNVDECGSNPCQNNGTCHDLLN 178
++GP C + T N
Sbjct: 215 FSGPLCNDPGTTYIFSKGGGQITYKWPPN 243
Score = 53.1 bits (127), Expect = 3e-08
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 54 GYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCP-PGYTGPSCESNVDECGSNPCQN 112
G C+ C + C N G C+ ++C C ++GP C +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Query: 113 NGTCHDLLN 121
T N
Sbjct: 235 QITYKWPPN 243
Score = 49.2 bits (117), Expect = 5e-07
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 190 GWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCAC-LFGFTGRNCDIELKICENSPC 246
G C+ + C+ C N GVC+ ++C C + F+G C+ S
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Score = 34.6 bits (79), Expect = 0.029
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 227 FGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYC-VPDYHGNRCQYQYDECQ 280
G R C+ C+ C N+ +CL++ + C C + + G C
Sbjct: 174 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI 228
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 53.5 bits (127), Expect = 6e-09
Identities = 32/169 (18%), Positives = 48/169 (28%), Gaps = 15/169 (8%)
Query: 70 NPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHP 129
+ G + + C C G S + + N C C +P
Sbjct: 10 DTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEE---XNECXXETLGXACGEFGQCIENP 66
Query: 130 GFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNG----TCHDLLNGFVCSCH 185
+ Y C C GYT +D C C +G + CSC
Sbjct: 67 -----DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCA 121
Query: 186 PGFTGWTGS---LCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTG 231
G + C+ + VC ++ Y C C+ GFT
Sbjct: 122 IGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 51.2 bits (121), Expect = 4e-08
Identities = 29/178 (16%), Positives = 45/178 (25%), Gaps = 32/178 (17%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWD-----------ECWSNPCHNGGSCIDGIAAYNCSCPPG 92
+ + C C +G + T + C + Y C C G
Sbjct: 22 SNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEG 81
Query: 93 YTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTG 152
YT +D C C +G C + I + CSC G
Sbjct: 82 YTLXEDTCVLDVCQYXNCGESGEC---------------IVEYLSEIQSAGCSCAIGXVP 126
Query: 153 PSCES------NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECE 204
+ C +N C ++ + C C GFT +
Sbjct: 127 NPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184
Score = 45.4 bits (106), Expect = 4e-06
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 39 PIFAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGG----SCIDGIAAYNCSCPPGYT 94
P A + Y C CI+GYT D C C G + I + CSC G
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 95 GPSCES------NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
+ C +N C ++ + C C GFT +
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 39.2 bits (90), Expect = 5e-04
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 156 ESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQ--------SATNECESSP 207
E+ + NG + N F C C+ G + + C+ + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 208 CQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEE 255
Y C C+ G+T L +C+ C C+ E
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE 108
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 51.2 bits (123), Expect = 1e-08
Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 20/126 (15%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFV 124
D C+ C +D +Y C C G+ E + + N C D
Sbjct: 5 DPCFRANCEYQCQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQAS 62
Query: 125 CSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSC 184
C C G+ + G C ++DEC N +G CH+L F C C
Sbjct: 63 CECPEGYILD----------------DGFICT-DIDEC-ENGGFCSGVCHNLPGTFECIC 104
Query: 185 HPGFTG 190
P
Sbjct: 105 GPDSAL 110
Score = 49.7 bits (119), Expect = 4e-08
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYT---GPSCES 100
+SY C C +G+ + + + + + N C +C CP GY G C
Sbjct: 21 QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFICT- 78
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDG 138
++DEC N +G CH+L F C C P G
Sbjct: 79 DIDEC-ENGGFCSGVCHNLPGTFECICGPDSALAGQIG 115
Score = 44.3 bits (105), Expect = 4e-06
Identities = 28/134 (20%), Positives = 40/134 (29%), Gaps = 23/134 (17%)
Query: 102 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE 161
VD C C+ C L +Y C C G+ E + +
Sbjct: 4 VDPCFRANCEY--QCQPLDQT------------------SYLCVCAEGFAPIPHEPHRCQ 43
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAY 221
N C D C C G+ G +C +ECE+ + GVC +L +
Sbjct: 44 MFCNQTACPADC-DPNTQASCECPEGYILDDGFICTD-IDECENGGFCS-GVCHNLPGTF 100
Query: 222 TCACLFGFTGRNCD 235
C C
Sbjct: 101 ECICGPDSALAGQI 114
Score = 25.8 bits (57), Expect = 9.5
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 201 NECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALC 252
+ C + C+ +D +Y C C GF + + A C
Sbjct: 5 DPCFRANCEYQCQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC 55
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 50.8 bits (122), Expect = 1e-08
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWT 192
+ ++ Y+ +EC N + C+DL G+ C C GF
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA 62
Query: 193 GSLCQSATNECES-SPCQNGGVCVDLHAAYTCACLFGFT 230
C+ +EC+ C +CV+L Y C C GF
Sbjct: 63 QRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 98
Score = 50.0 bits (120), Expect = 3e-08
Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 27/120 (22%)
Query: 74 NGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT- 132
++ Y+ +EC N + C+DL G+ C C GF
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 133 ---GNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT 189
C D +DEC +P + C +L G+ C C GF
Sbjct: 61 VAQRRCED---------------------IDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 45.0 bits (107), Expect = 2e-06
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYT---GPSCES 100
S Y + +EC N C D Y C CP G+ CE
Sbjct: 10 MSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE- 67
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT 132
++DEC +P + C +L G+ C C GF
Sbjct: 68 DIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 31.5 bits (72), Expect = 0.089
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 169 NNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFG 228
+ H ++ + TNEC + VC DL Y C C G
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGA----MGTNECLDNNGGCSYVCNDLKIGYECLCPDG 57
Query: 229 FT 230
F
Sbjct: 58 FQ 59
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 50.2 bits (119), Expect = 3e-07
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 3/130 (2%)
Query: 65 DECWSNPCHNGGSCIDGIAAYNCSCPPGYT--GPSCESNVDECGSNPCQNNGTCHDLLNG 122
+EC N C D Y C CP G+ ++DEC +P + C +L G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGG 59
Query: 123 FVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVC 182
+ C C GF + S + E + + +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 119
Query: 183 SCHPGFTGWT 192
W+
Sbjct: 120 EVASNRIYWS 129
Score = 44.8 bits (105), Expect = 2e-05
Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 18/144 (12%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
+EC N + C+DL G+ C C GF ++DEC
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ-----------------LVAQRRCEDIDEC 43
Query: 163 GSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYT 222
+P + C +L G+ C C GF + A N + +
Sbjct: 44 -QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 223 CACLFGFTGRNCDIELKICENSPC 246
RN ++
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRI 126
Score = 31.0 bits (69), Expect = 0.41
Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 3/132 (2%)
Query: 43 VPSSYTCYCIDGYT--GVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCES 100
+ Y C C DG+ + DEC +P C++ Y C C G+
Sbjct: 17 LKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 75
Query: 101 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVD 160
GS H++ + + + A + S S
Sbjct: 76 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 135
Query: 161 ECGSNPCQNNGT 172
C + + +G
Sbjct: 136 ICSTQLDRAHGV 147
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 45.0 bits (107), Expect = 1e-06
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 100 SNVDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESN 158
+++DEC +P G C + F C C G+ + +C +
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMM--------------MKNCM-D 45
Query: 159 VDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFT 189
+DEC +P G CH+ + C C PG
Sbjct: 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
Score = 43.4 bits (103), Expect = 3e-06
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 65 DECWSNP-CHNGGSCIDGIAAYNCSCPPGYT-----GPSCESNVDECGSNPCQ-NNGTCH 117
DEC +P G C++ + C C GY +C ++DEC +P G CH
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGGVCH 62
Query: 118 DLLNGFVCSCHPGFTGN 134
+ + C C PG +
Sbjct: 63 NTEGSYRCECPPGHQLS 79
Score = 39.2 bits (92), Expect = 1e-04
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 157 SNVDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFT--GWTGSLCQSATNECESSPCQ-NGG 212
+++DEC +P G C + F C C G+ C +EC+ P GG
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD-IDECQRDPLLCRGG 59
Query: 213 VCVDLHAAYTCACLFGFT----GRNC 234
VC + +Y C C G C
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 35.3 bits (82), Expect = 0.003
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 44 PSSYTCYCIDGYTGVHCQTNW----DECWSNPCH-NGGSCIDGIAAYNCSCPPGYT 94
P + C C +GY DEC +P GG C + +Y C CPPG+
Sbjct: 22 PGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 77
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 46.9 bits (111), Expect = 2e-06
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 21/139 (15%)
Query: 59 HCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHD 118
C+ + CH G GI C C GY G +CE G + + G+C
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCEC--QTQGRSSQELEGSCRK 138
Query: 119 LLNGFVCSCHPGFTGNCIDGIAAYNCSCPPG--YTGPSCESNVDECGSN-----PCQNNG 171
N +CS G+C+ G + S PG G CE + C G
Sbjct: 139 DNNSIICSGL----GDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG 194
Query: 172 TCHDLLNGFVCSCHPGFTG 190
C C CHPGF G
Sbjct: 195 LCFC----GKCRCHPGFEG 209
Score = 29.2 bits (65), Expect = 1.1
Identities = 29/180 (16%), Positives = 41/180 (22%), Gaps = 48/180 (26%)
Query: 97 SCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
C + C G +C C G+ G + C +
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCE------CQTQGRSSQELEG 134
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
S + S C G C C CH Q + + NG VC
Sbjct: 135 SCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGG 190
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQY 276
C G C C P + G+ CQ+ +
Sbjct: 191 PG---RGLCFCG-------------------------------KCRCHPGFEGSACQHHH 216
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 47.5 bits (113), Expect = 3e-06
Identities = 16/117 (13%), Positives = 24/117 (20%), Gaps = 17/117 (14%)
Query: 60 CQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDL 119
+ +G S + C + D G H+
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSS-----FYHDTDFLGEELDIVAAKSHE- 315
Query: 120 LNGFVCSCHPGFTGNCIDGIAAYNC---SCPPGYTGPSCESNVDECGSNPCQNNGTC 173
+C T Y SC G C + GS +G
Sbjct: 316 ------ACQKLCTNAVRCQFFTYTPAQASCNEG--KGKCYLKLSSNGSPTKILHGRG 364
Score = 34.4 bits (79), Expect = 0.038
Identities = 11/123 (8%), Positives = 26/123 (21%), Gaps = 15/123 (12%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPC 110
+ G++ C+ + + ++ + + +C+ C
Sbjct: 274 ALSGFSLQSCRHSIPVFCHSSFYHDTDFLGE----ELDIVAAKSHEACQKL--------C 321
Query: 111 QNNGTCHDLLNGFVCSCHP-GFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQN 169
N C + + + N S G S
Sbjct: 322 TNAVRCQF--FTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
Query: 170 NGT 172
T
Sbjct: 380 CTT 382
Score = 34.1 bits (78), Expect = 0.045
Identities = 12/104 (11%), Positives = 21/104 (20%), Gaps = 24/104 (23%)
Query: 155 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG-----------------------W 191
+ + + + CH F
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLC 321
Query: 192 TGSL-CQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNC 234
T ++ CQ T + C G L + + GR
Sbjct: 322 TNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGG 365
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 44.0 bits (104), Expect = 8e-06
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
C C G C++ I Y CSC PG+ GP CE D+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 112 NNGTCHDLLNGFVC---SCHP---GFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
N+ C +C SC G C++ I Y CSC PG+ GP CE D+
Sbjct: 105 NDEHCLKK-KHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 34.8 bits (80), Expect = 0.012
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 193 GSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICE 242
+LC +A+ C+ C G C++ YTC+C GF G C+ +
Sbjct: 114 HALCYTAS--CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 34.4 bits (79), Expect = 0.017
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 233 NCDIELK-ICEN-----SPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDECQ 280
+C + +C C + CLE C C P ++G C+Y D+
Sbjct: 108 HCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 34.0 bits (78), Expect = 0.025
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECE 204
C C G C + + + CSC+PGF G C+ ++ +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGF---YGPECEYVRDDDD 161
Score = 26.7 bits (59), Expect = 6.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDEC 67
+YTC C G+ G C+ D+
Sbjct: 137 IGNYTCSCYPGFYGPECEYVRDDD 160
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 45.1 bits (106), Expect = 1e-05
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 100 SNVDECGSN--PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
C +N C + C D GF C C +TGN +A + G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNG--KVKGRI 60
Query: 158 NVDECGSNPCQNNGTCHD 175
V N H
Sbjct: 61 FVGSSQVPVVFENTDLHS 78
Score = 34.7 bits (79), Expect = 0.021
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 157 SNVDECGSN--PCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGV 213
C +N C + C D GF C C +TG G C + + + G +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG-NGRQCVAEGSPQRVNGKVKGRI 60
Score = 34.7 bits (79), Expect = 0.022
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 65 DECWSN--PCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNG 122
C +N C C D + C C YTG +P + NG +
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTG---NGRQCVAEGSPQRVNGKVKGRIFV 62
Query: 123 FVCSCHPGFTGNCIDG 138
F +
Sbjct: 63 GSSQVPVVFENTDLHS 78
Score = 26.6 bits (58), Expect = 9.9
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 201 NECESS--PCQNGGVCVDLHAAYTCACLFGFTGRN 233
C ++ C C D + C C+ +TG
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG 40
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 45.5 bits (107), Expect = 1e-05
Identities = 42/200 (21%), Positives = 59/200 (29%), Gaps = 37/200 (18%)
Query: 66 ECWSNPCHNGG----SCIDGIAAYNC-SCPPGYTGPSCESNVDECGSNPCQNNGTCHDLL 120
+ + G +C NC C P Y D PC + +
Sbjct: 332 AVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSE-- 389
Query: 121 NGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE-----------SNVDECGSNPCQN 169
NG +C + F+ I G C C G C+ + C S C
Sbjct: 390 NGGICDGYTDFSVGLIAG----QCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNP 445
Query: 170 NGTCH-----DLLNGFVCSCHPGFTGWTGSLC-------QSATNECESSPCQNGGVCVDL 217
GT D G C C TG C + + C C GG +
Sbjct: 446 LGTIPGGNPCDSETG-YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNS 504
Query: 218 HAAYT--CACLFGFTGRNCD 235
+ + C+CL GR C+
Sbjct: 505 CSEDSGQCSCLPHMIGRQCN 524
Score = 42.0 bits (98), Expect = 1e-04
Identities = 47/251 (18%), Positives = 70/251 (27%), Gaps = 43/251 (17%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCES------ 100
Y Y + C + EC P ++G+ +C C G +CE
Sbjct: 243 YAVYDMVVRGNCFCYGHASEC--APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYH 300
Query: 101 ----------NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG----NCIDGIAAYNC-S 145
N + C C + + + V +G NC NC
Sbjct: 301 DLPWRPAEGRNSNACKKCNCNEHSSSCH-FDMAVFLATGNVSGGVCDNCQHNTMGRNCEQ 359
Query: 146 CPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECES 205
C P Y D PC + + NG +C + T +C
Sbjct: 360 CKPFYFQHPERDIRDPNLCEPCTCDPAGSE--NGGICDGY------TDFSVGLIAGQCRC 411
Query: 206 SPCQNG---GVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCY 262
G VC + + +G C+ I +PC + E CY
Sbjct: 412 KLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPC--------DSETGYCY 463
Query: 263 CVPDYHGNRCQ 273
C G RC
Sbjct: 464 CKRLVTGQRCD 474
Score = 34.7 bits (79), Expect = 0.034
Identities = 30/128 (23%), Positives = 39/128 (30%), Gaps = 22/128 (17%)
Query: 44 PSSYTCYCIDGYTGVHCQ-----------TNWDECWSNPCHNGGSCIDGIAAYN----CS 88
+ C C G C + C S C+ G+ G + C
Sbjct: 404 LIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCY 463
Query: 89 CPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPP 148
C TG C D+C Q+ G +DL C C G N + CSC P
Sbjct: 464 CKRLVTGQRC----DQC---LPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLP 516
Query: 149 GYTGPSCE 156
G C
Sbjct: 517 HMIGRQCN 524
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 43.6 bits (103), Expect = 1e-05
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 60 CQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C T C + C G C++ I Y C C PG++G CE
Sbjct: 117 CYT--AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 112 NNGTCHDLLNGFVC--------SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
N+ C +C SC G C++ I Y C C PG++G CE
Sbjct: 105 NDERCSKK-KLALCYTAACTNTSCSGH--GECVETINNYTCKCDPGFSGLKCE 154
Score = 35.9 bits (83), Expect = 0.005
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 193 GSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+LC T C ++ C G CV+ YTC C GF+G C+
Sbjct: 114 LALCY--TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 33.2 bits (76), Expect = 0.042
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 98 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 133
C C + C +G C + +N + C C PGF+G
Sbjct: 117 CY--TAACTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 33.2 bits (76), Expect = 0.042
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 155 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C C + C +G C + +N + C C PGF+G
Sbjct: 117 CY--TAACTNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 28.2 bits (63), Expect = 1.8
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 233 NCDIELK-ICE-----NSPCLNEALCLEEEEEQVCYCVPDYHGNRCQY 274
C + +C N+ C C+E C C P + G +C+
Sbjct: 108 RCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 26.6 bits (59), Expect = 6.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 44 PSSYTCYCIDGYTGVHCQ 61
++YTC C G++G+ C+
Sbjct: 137 INNYTCKCDPGFSGLKCE 154
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 41.9 bits (99), Expect = 1e-05
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 65 DECWSNPCH-NGGSCIDGIAAYNCSCPPGYT----GPSCESNVDECGSNPCQNNGTCHDL 119
DEC P C + + C CP GY SCE ++DEC N C C +
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNY 60
Query: 120 LNGFVCSC--HPGFT 132
G+ C C GF
Sbjct: 61 PGGYTCYCDGKKGFK 75
Score = 38.4 bits (90), Expect = 2e-04
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 128 HPGFTGNCIDGIAAYNCSCPPGYT----GPSCESNVDECGSNPCQNNGTCHDLLNGFVCS 183
T C + + C CP GY SCE ++DEC N C C + G+ C
Sbjct: 11 SICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCY 67
Query: 184 C--HPGFT 189
C GF
Sbjct: 68 CDGKKGFK 75
Score = 28.4 bits (64), Expect = 0.81
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 44 PSSYTCYCIDGYT----GVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSC--PPGYT 94
P + C C +GY C+ + DEC N C C++ Y C C G+
Sbjct: 22 PGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCDGKKGFK 75
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 43.9 bits (103), Expect = 4e-05
Identities = 29/206 (14%), Positives = 47/206 (22%), Gaps = 14/206 (6%)
Query: 45 SSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYN-CSCPPGYTGPSC----- 98
+Y +G CQ + + N C P G P C
Sbjct: 262 ENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNS 321
Query: 99 ESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAA-YNCSCPPGYTGPSC-- 155
+ + C C ++ + L +C G Y + TG C
Sbjct: 322 QVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQS 381
Query: 156 ESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCV 215
S++ N L + + G C + C N C
Sbjct: 382 WSSMTPHRHQKTPENYPNAGLTMNYCRNPD----ADKGPWCFTTDPSVRWEYC-NLKKCS 436
Query: 216 DLHAAYTCACLFGFTGRNCDIELKIC 241
A+ + C
Sbjct: 437 GTEASVVAPPPVVLLPDVETPSEEDC 462
Score = 32.3 bits (73), Expect = 0.21
Identities = 36/219 (16%), Positives = 52/219 (23%), Gaps = 33/219 (15%)
Query: 87 CSCPPGYTGPSCESNVDECGSNPCQN-NGTCHDLLNGFVCSC--------HPGFTGNCID 137
C P T P +C +N G ++G C H N
Sbjct: 238 CDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPC 297
Query: 138 GIAAYN-CSCPPGYTGPSCES----------NVDECGSNPCQNNGTCHDLLNGFVCSCHP 186
N C P G P C + + C S+P
Sbjct: 298 KNLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQD 357
Query: 187 GFTGWTGSLCQSATNECESSPCQNGGVCVDLH------AAYTCACLFGFTGRNCDIELKI 240
+ G S +++ CQ+ + H Y A L RN D +
Sbjct: 358 CYHGDGQSYRGTSSTTTTGKKCQSWS-SMTPHRHQKTPENYPNAGLTMNYCRNPDADKGP 416
Query: 241 C--ENSPCLNEALCL----EEEEEQVCYCVPDYHGNRCQ 273
P + C E V P +
Sbjct: 417 WCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVE 455
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 42.9 bits (101), Expect = 7e-05
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 4/112 (3%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTG---PSCESNVDECGSNPCQNNGTCHD 118
+ + N C N +G+ Y P + CE V+E + +
Sbjct: 54 NSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAI 113
Query: 119 LLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNN 170
F G +C P + S E + +
Sbjct: 114 EGATATSEYQTFFNPATF-GSGEADCGLRPLFEKKSLEDKTERELLESYIDG 164
Score = 42.5 bits (100), Expect = 9e-05
Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 15/131 (11%)
Query: 133 GNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWT 192
+ + + + N C+N + + +V F
Sbjct: 40 ASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCD 89
Query: 193 GSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALC 252
+ C+ A E A T F + C L
Sbjct: 90 LNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFG-----SGEADCGLRPLF 144
Query: 253 LEEEEEQVCYC 263
++ E
Sbjct: 145 EKKSLEDKTER 155
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 42.5 bits (99), Expect = 1e-04
Identities = 22/143 (15%), Positives = 30/143 (20%), Gaps = 17/143 (11%)
Query: 62 TNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLN 121
T + C N C A C+C GY + N C G C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDV--NECAEEGYCSQG-- 56
Query: 122 GFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFV 181
C + A+ C C GY + G P D+
Sbjct: 57 -------------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103
Query: 182 CSCHPGFTGWTGSLCQSATNECE 204
+
Sbjct: 104 HRSEYTLLLNNLENAIALDFHHR 126
Score = 40.9 bits (95), Expect = 3e-04
Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 3/124 (2%)
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNEC-ESSPCQNGGVCV 215
+ + C N C + C+CH G+ NEC E C C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCT 58
Query: 216 DLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQ 275
+ A+ C C G+ R K P L A ++ + N +
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 276 YDEC 279
Sbjct: 119 IALD 122
Score = 39.8 bits (92), Expect = 8e-04
Identities = 24/173 (13%), Positives = 42/173 (24%), Gaps = 24/173 (13%)
Query: 100 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNV 159
+ + C N C + C+CH G+ + +C V
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYR------LTEDGRTCQD----------V 44
Query: 160 DECGSNP-CQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLH 218
+EC C C + F C C G+ L + P +
Sbjct: 45 NECAEEGYCSQG--CTNSEGAFQCWCEAGYE-----LRPDRRSCKALGPEPVLLFANRID 97
Query: 219 AAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNR 271
+T ++E I + E + + N
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150
Score = 34.0 bits (77), Expect = 0.045
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 6/113 (5%)
Query: 43 VPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSC----IDGIAAYNCSCPPGYTGPSC 98
+ + C C GY + N C G C + A+ C C GY
Sbjct: 20 IRGAVQCTCHTGYRLTEDGRTCQDV--NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPD 77
Query: 99 ESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYT 151
+ G P D+ N ++ A +
Sbjct: 78 RRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELV 130
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 41.9 bits (98), Expect = 1e-04
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 130 GFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT 189
G + P + + NG C C C PG
Sbjct: 361 THNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGK---CCCSPG-- 415
Query: 190 GWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
W G C++A +CE C++GGVCV + C C G+ G C+
Sbjct: 416 -WEGDFCRTA--KCEP-ACRHGGVCVRPN---KCLCKKGYLGPQCE 454
Score = 36.9 bits (85), Expect = 0.006
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 49 CYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C C G+ G C+T +C C +GG C+ C C GY GP CE
Sbjct: 410 CCCSPGWEGDFCRTA--KC-EPACRHGGVCVR---PNKCLCKKGYLGPQCE 454
Score = 34.2 bits (78), Expect = 0.046
Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 29/85 (34%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 131
C NG G C C PG+ G C +C C++ G C
Sbjct: 399 CRNGYCTPTG----KCCCSPGWEGDFCR--TAKCEP-ACRHGGVC--------------- 436
Query: 132 TGNCIDGIAAYNCSCPPGYTGPSCE 156
+ C C GY GP CE
Sbjct: 437 -------VRPNKCLCKKGYLGPQCE 454
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 60 CQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCE 99
C T C C G C++ I Y C+C GY GP C+
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 36.3 bits (84), Expect = 0.004
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 112 NNGTCHDLLNGFVC---SCHP---GFTGNCIDGIAAYNCSCPPGYTGPSCE 156
N+ CH L +C SC P G C++ I Y C+C GY GP C+
Sbjct: 105 NDDACHKL-KAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 32.1 bits (73), Expect = 0.097
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 195 LCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNC 234
LC +A+ C+ C G CV++ YTC C G+ G C
Sbjct: 116 LCYTAS--CQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
Score = 31.7 bits (72), Expect = 0.15
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 233 NCDIELK-ICENS-----PCLNEALCLEEEEEQVCYCVPDYHGNRCQY 274
C +C + C C+E C C Y+G +CQ+
Sbjct: 108 ACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
Score = 30.2 bits (68), Expect = 0.52
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 105 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGN 134
C C +G C +++N + C+C G+ G
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 29.8 bits (67), Expect = 0.56
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTG 190
C C +G C +++N + C+C G+ G
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYG 150
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 35.9 bits (83), Expect = 7e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 66 ECWSNPCHNGGSC--IDGIAAYNCSCPPGYTGPSCE 99
+ C NGG C I+ + +Y C+C GY+G C+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 30.9 bits (70), Expect = 0.047
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 241 CENSPCLNEALC--LEEEEEQVCYCVPDYHGNRCQYQ 275
+ CLN +C +E + C CV Y G+RCQ +
Sbjct: 9 SYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
Score = 30.6 bits (69), Expect = 0.054
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 201 NECESSPCQNGGVCVDLHA--AYTCACLFGFTGRNCD 235
C NGGVC+ + + +YTC C+ G++G C
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 30.2 bits (68), Expect = 0.084
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 161 ECGSNPCQNNGTCHDL--LNGFVCSCHPGFTG 190
C N G C + L+ + C+C G++G
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSG 39
Score = 29.8 bits (67), Expect = 0.14
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
C N G C I+ + +Y C+C GY+G C+
Sbjct: 8 SSYDGYCLNGGVCMH-----------------IESLDSYTCNCVIGYSGDRCQ 43
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 39.6 bits (92), Expect = 8e-04
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 201 NECESSPCQNGGVCVDL-HAAYTCACL-FGFTGRNCDI 236
N C PCQ+ G+CV Y C C G++G NC I
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 38.1 bits (88), Expect = 0.002
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 65 DECWSNPCHNGGSCID-GIAAYNCSC-PPGYTGPSCES 100
+ C PC + G C+ G+ Y C C GY+GP+C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 35.0 bits (80), Expect = 0.023
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 19/57 (33%)
Query: 102 VDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSC-PPGYTGPSCES 157
V+ C PCQ+ G C G+ Y C C GY+GP+C
Sbjct: 2 VNPCCYYPCQHQGICVRF------------------GLDRYQCDCTRTGYSGPNCTI 40
Score = 33.5 bits (76), Expect = 0.082
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 159 VDECGSNPCQNNGTCHDL-LNGFVCSCHPGFTGWTGSLCQSAT 200
V+ C PCQ+ G C L+ + C C TG++G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTR--TGYSGPNCTIPE 42
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 39.4 bits (91), Expect = 0.001
Identities = 43/227 (18%), Positives = 65/227 (28%), Gaps = 23/227 (10%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNC--SCPPGYTGPSCESNVDECGSN 108
C D +C C +G +CI G + C C + G N
Sbjct: 201 CKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 259
Query: 109 PCQ-NNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPC 167
+ ++G C + VC+ C P E +EC N
Sbjct: 260 KFKCHSGEC--ITLDKVCNMARD---------------CRDWSDEPIKECGTNECLDNNG 302
Query: 168 QNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLF 227
+ C+DL G+ C C GF C+ + C +CV+L Y C C
Sbjct: 303 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEE 360
Query: 228 GFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQY 274
GF K + L E + + +
Sbjct: 361 GFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 407
Score = 35.9 bits (82), Expect = 0.014
Identities = 33/189 (17%), Positives = 47/189 (24%), Gaps = 7/189 (3%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCH-NGGSCIDGIAAYNCS--CPPGYTGPSCESNVDECGS 107
C D V C N + G CI N + C P E +EC
Sbjct: 240 CKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD 299
Query: 108 NPCQNNGTCHDLLNGFVCSCHPGFTGN----CIDGIAAYNCSCPPGYTGPSCESNVDECG 163
N + C+DL G+ C C GF C D + +C
Sbjct: 300 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 359
Query: 164 SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTC 223
+ T G + + + P V +D A
Sbjct: 360 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 419
Query: 224 ACLFGFTGR 232
+ R
Sbjct: 420 IYWSDLSQR 428
Score = 33.2 bits (75), Expect = 0.086
Identities = 44/244 (18%), Positives = 66/244 (27%), Gaps = 24/244 (9%)
Query: 59 HCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGY----TGPSCESNVDECGSNPCQNNG 114
C ++ C N C DG + C Y C + C S C ++
Sbjct: 133 QCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSS 192
Query: 115 -------TCHDLLNGFVCSCHPGFT-------GNCIDGIAAYNC--SCPPGYTGPSCESN 158
C D + C+ GNCI G + C C +
Sbjct: 193 WRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV 252
Query: 159 VDECGSNPCQ-NNGTCHDLLNGFVCSCHPG-FTGWTGSLCQSATNECESSPCQNGGVCVD 216
G N + ++G C + VC+ + + TNEC + VC D
Sbjct: 253 TLCEGPNKFKCHSGEC--ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 310
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQY 276
L Y C C GF I E + E + +
Sbjct: 311 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 370
Query: 277 DECQ 280
+
Sbjct: 371 CKAV 374
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 38.3 bits (88), Expect = 0.001
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 52 IDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQ 111
+ C+ + CH G GI C C GY G +CE G + +
Sbjct: 178 VQVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCEC--QTQGRSSQE 231
Query: 112 NNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPG------YTGPSCE 156
G+C N +CS G+C+ G C C G CE
Sbjct: 232 LEGSCRKDNNSIICSGL----GDCVCG----QCLCHTSDVPGKLIYGQYCE 274
Score = 27.5 bits (60), Expect = 4.8
Identities = 28/168 (16%), Positives = 43/168 (25%), Gaps = 31/168 (18%)
Query: 47 YTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYT-GPSCESNVDEC 105
Y +C +G T + +C + + + A C + +++
Sbjct: 121 YDSFCSNGVTHRNQPRG--DCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTV 178
Query: 106 GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC--- 162
P + +C G GI C C GY G +CE
Sbjct: 179 QVLPQCECRCRDQSRDRSLCHGK----GFLECGI----CRCDTGYIGKNCECQTQGRSSQ 230
Query: 163 ----------GSNPCQNNGTCHDLLNGFVCSCHPGFTG---WTGSLCQ 197
S C G C C CH G C+
Sbjct: 231 ELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCE 274
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 38.6 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 201 NECESSPCQNGGVCVDLHA-AYTCACL-FGFTGRNCDI 236
N C S+PCQN G C+ Y C C GF G NC
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 38.6 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 65 DECWSNPCHNGGSCID-GIAAYNCSCPP-GYTGPSCES 100
+ C SNPC N G C+ G Y C C G+ G +C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 33.9 bits (77), Expect = 0.062
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 19/56 (33%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPP-GYTGPSCES 157
+ C SNPCQN G C G Y C C G+ G +C +
Sbjct: 2 NPCCSNPCQNRGECMST------------------GFDQYKCDCTRTGFYGENCTT 39
Score = 33.6 bits (76), Expect = 0.067
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 160 DECGSNPCQNNGTCHDL-LNGFVCSCHPGFTGWTGSLCQSAT 200
+ C SNPCQN G C + + C C TG+ G C +
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTR--TGFYGENCTTPE 41
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 34.0 bits (78), Expect = 0.003
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 65 DECWSNPCHNGGSC--IDGIAAYNCSCPPGYTGPSCE 99
C + G C I+ + Y C+C GY G C+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 30.2 bits (68), Expect = 0.077
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 241 CENSPCLNEALC--LEEEEEQVCYCVPDYHGNRCQYQ 275
+ CL++ +C +E ++ C CV Y G RCQY+
Sbjct: 9 SHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 26.7 bits (59), Expect = 1.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 133 GNC--IDGIAAYNCSCPPGYTGPSCE 156
G C I+ + Y C+C GY G C+
Sbjct: 18 GVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 26.7 bits (59), Expect = 1.7
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 201 NECESSPCQNGGVCVDLHA--AYTCACLFGFTGRNC 234
C + GVC+ + A Y C C+ G+ G C
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 160 DECGSNPCQNNGTC--HDLLNGFVCSCHPGFTG 190
C ++G C + L+ + C+C G+ G
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIG 39
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 34.0 bits (77), Expect = 0.004
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 65 DECWSNPCHNGGSC-----IDGIAAYNCSCPPGYTGPSCESNV 102
E C NGG C + + Y C C PG+TG C NV
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 28.6 bits (63), Expect = 0.37
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNV 159
E C N G C F + + Y C C PG+TG C NV
Sbjct: 7 AEKEKTFCVNGGEC--------------FMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 27.0 bits (59), Expect = 1.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 201 NECESSPCQNGGVC-----VDLHAAYTCACLFGFTGRNCD 235
E E + C NGG C + + Y C C GFTG C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 25.1 bits (54), Expect = 7.4
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 240 ICENSPCLNEALC-----LEEEEEQVCYCVPDYHGNRCQ 273
E + C+N C L +C C P + G RC
Sbjct: 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 32.6 bits (74), Expect = 0.015
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 70 NPCHNGGSC----IDGIAAYNCSCPPGYTGPSCE 99
C N C I + Y+C C G+ G CE
Sbjct: 14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 28.7 bits (64), Expect = 0.31
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 242 ENSPCLNEALCLEEEEEQ----VCYCVPDYHGNRCQYQYDECQITPR 284
+ CLN+A C + C C + G RC+Y+ + P+
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLPK 58
Score = 26.0 bits (57), Expect = 2.9
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 15/54 (27%)
Query: 103 DECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
+ + C N+ C + I + Y+C C G+ G CE
Sbjct: 9 ETFDAWYCLNDAHCFAVK---------------IADLPVYSCECAIGFMGQRCE 47
Score = 25.3 bits (55), Expect = 6.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 204 ESSPCQNGGVCVDLHAA----YTCACLFGFTGRNCD 235
++ C N C + A Y+C C GF G+ C+
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 35.6 bits (81), Expect = 0.016
Identities = 42/205 (20%), Positives = 60/205 (29%), Gaps = 21/205 (10%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNC-SCPPGYTGPSCESNV 102
P + C C S C + DG S +C +
Sbjct: 178 PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDE 237
Query: 103 DECGSNPCQNNG-------TCHDLLNGFVCSCHPGF---------TGNCIDGIAAYNCS- 145
+C C + C D+ + C +G CI N +
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR 297
Query: 146 -CPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECE 204
C P E +EC N + C+DL G+ C C GF C+ +
Sbjct: 298 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 357
Query: 205 SSPCQNGGVCVDLHAAYTCACLFGF 229
C +CV+L Y C C GF
Sbjct: 358 PDTCSQ--LCVNLEGGYKCQCEEGF 380
Score = 34.0 bits (77), Expect = 0.058
Identities = 48/244 (19%), Positives = 70/244 (28%), Gaps = 24/244 (9%)
Query: 59 HCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGY----TGPSCESNVDECGSNPCQN-N 113
C ++ C N C DG + C Y C + C S C + +
Sbjct: 151 QCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSS 210
Query: 114 GTCH---------DLLNGFVCSCHPGF----TGNCIDGIAAYNCS--CPPGYTGPSCESN 158
C D N V +C P GNCI G + C C +
Sbjct: 211 WRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV 270
Query: 159 VDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFTGWTG-SLCQSATNECESSPCQNGGVCVD 216
G N + ++G C + VC+ W+ + + TNEC + VC D
Sbjct: 271 TLCEGPNKFKCHSGEC--ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 328
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQY 276
L Y C C GF I E + E + +
Sbjct: 329 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 388
Query: 277 DECQ 280
+
Sbjct: 389 CKAV 392
Score = 31.7 bits (71), Expect = 0.31
Identities = 33/189 (17%), Positives = 47/189 (24%), Gaps = 7/189 (3%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCH-NGGSCIDGIAAYNCS--CPPGYTGPSCESNVDECGS 107
C D V C N + G CI N + C P E +EC
Sbjct: 258 CKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD 317
Query: 108 NPCQNNGTCHDLLNGFVCSCHPGF----TGNCIDGIAAYNCSCPPGYTGPSCESNVDECG 163
N + C+DL G+ C C GF C D + +C
Sbjct: 318 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 377
Query: 164 SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTC 223
+ T G + + + P V +D A
Sbjct: 378 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 437
Query: 224 ACLFGFTGR 232
+ R
Sbjct: 438 IYWSDLSQR 446
Score = 28.3 bits (62), Expect = 3.1
Identities = 46/250 (18%), Positives = 72/250 (28%), Gaps = 28/250 (11%)
Query: 51 CIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAA--YNCSCPPGYTGPSCESNVDECGSN 108
C +G C CH+ G CI + C G SC S
Sbjct: 92 CDNGSDEQGCPPKTCSQDEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASF 150
Query: 109 PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGY----TGPSCESNVDECGS 164
C N+ TC + + C P +C DG + C Y C + C S
Sbjct: 151 QC-NSSTC--IPQLWACDNDP----DCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 203
Query: 165 NPCQN-NGTCH---------DLLNGFVCSCHPGFTGWTGSLCQSATNECESSP-CQNGGV 213
C + + C D N V +C P + C + +C+ C++
Sbjct: 204 GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSD 263
Query: 214 CVDLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQ 273
V C F + + I + C C + +E + C + +
Sbjct: 264 EVGCVNVTLCEGPNKFKCHSGEC---ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNG 320
Query: 274 YQYDECQITP 283
C
Sbjct: 321 GCSHVCNDLK 330
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 34.5 bits (78), Expect = 0.018
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 51 CIDGYTGVHCQTNWDECW-SNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNV 102
+ + C NGG C C CP G+ GP CE
Sbjct: 133 ILXTPQNAIFFKTCQQAECPGGCRNGGFCN---ERRICECPDGFHGPHCEGTK 182
Score = 33.4 bits (75), Expect = 0.045
Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 19/92 (20%)
Query: 144 CSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNEC 203
C G + T T ++
Sbjct: 107 FPCLGXQDGVAAFEV---DVIVMNSEGNTILX-------------TPQNAIFFKTCQQAE 150
Query: 204 ESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
C+NGG C C C GF G +C+
Sbjct: 151 CPGGCRNGGFCN---ERRICECPDGFHGPHCE 179
Score = 33.0 bits (74), Expect = 0.072
Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 9/79 (11%)
Query: 87 CSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFT---GNCIDG---IA 140
C G + T + G C +G
Sbjct: 107 FPCLGXQDGVAAFEV---DVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 141 AYNCSCPPGYTGPSCESNV 159
C CP G+ GP CE
Sbjct: 164 RRICECPDGFHGPHCEGTK 182
Score = 26.4 bits (57), Expect = 8.8
Identities = 14/105 (13%), Positives = 21/105 (20%), Gaps = 13/105 (12%)
Query: 170 NGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGF 229
N + GF +A G
Sbjct: 89 NVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTI----------LXTPQ 138
Query: 230 TGRNCDIELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQY 274
+ C N C E ++C C +HG C+
Sbjct: 139 NAIFFKTCQQAECPGGCRNGGFCNER---RICECPDGFHGPHCEG 180
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 35.3 bits (80), Expect = 0.020
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 59 HCQTNWDECWSNPCHNG-GSCIDGIAAYNCSCPPGYTGPSCESNVDEC 105
C + + + C +G G G+ CSC PG G CES E
Sbjct: 456 DCNCSDTQPQAPHCSDGQGHLQCGV----CSCAPGRLGRLCESRGLEN 499
Score = 32.2 bits (72), Expect = 0.17
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 15/62 (24%)
Query: 142 YNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATN 201
C C T P + G G VCSC P G G LC+S
Sbjct: 453 TLCDCNCSDTQPQA--------PHCSDGQGHLQC---G-VCSCAP---GRLGRLCESRGL 497
Query: 202 EC 203
E
Sbjct: 498 EN 499
Score = 31.8 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 126 SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDEC 162
C G G+ G+ CSC PG G CES E
Sbjct: 468 HCSDG-QGHLQCGV----CSCAPGRLGRLCESRGLEN 499
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 33.6 bits (77), Expect = 0.032
Identities = 36/144 (25%), Positives = 48/144 (33%), Gaps = 28/144 (19%)
Query: 71 PCHNGGSCIDGIAAYN---CSCPPGYTGPSCE--------------SNVDECGSNPCQNN 113
PC G SC CP G G CE V C C +N
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN 61
Query: 114 GTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC-SCPPGYTG-PSCESNVDECGSNPCQNNG 171
+ + N C+ G CI A + C C G+ G P + D+C + C G
Sbjct: 62 IDPNAVGN---CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYG 118
Query: 172 TCH-----DLLNGFVCSCHPGFTG 190
T + + G C C P +G
Sbjct: 119 TVQQQSSCNPVTG-QCQCLPHVSG 141
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 34.6 bits (78), Expect = 0.038
Identities = 14/139 (10%), Positives = 26/139 (18%), Gaps = 16/139 (11%)
Query: 76 GSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNC 135
+ P + + Q ++ G C G C
Sbjct: 488 SDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC 547
Query: 136 IDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSL 195
+ G +C C + G C+ + N W
Sbjct: 548 VQG----SCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSN------------QNWLTVS 591
Query: 196 CQSATNECESSPCQNGGVC 214
+ C +
Sbjct: 592 GGKLSTVCGAVASGLALHF 610
Score = 30.8 bits (68), Expect = 0.57
Identities = 21/179 (11%), Positives = 34/179 (18%), Gaps = 31/179 (17%)
Query: 69 SNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCH 128
+ C SC Y S G + + P + + L V
Sbjct: 439 AASCSVTDSCYAIELEY--SVDLGLS-----WHPLVRDCLPTNVECSRYHLQRILVSDTF 491
Query: 129 PGFTGNCID-------------GIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHD 175
+T + + + + + C +G C
Sbjct: 492 NKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIG--DGCLDMCSGHGRCV- 548
Query: 176 LLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNC 234
C C W G C + N G C
Sbjct: 549 ---QGSCVCDEQ---WGGLYCDEPETSLPTQLKDNFNRAPSNQ--NWLTVSGGKLSTVC 599
Score = 27.7 bits (60), Expect = 5.4
Identities = 18/173 (10%), Positives = 33/173 (19%), Gaps = 13/173 (7%)
Query: 29 PDSDWLALIIPIFAVPSSYTCYCIDGYTGVHCQTNWDE-CWSNPCHNGGSCIDGIAAYNC 87
W L+ + Y + W P +
Sbjct: 459 LGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPA 518
Query: 88 SCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCP 147
T + + + C +G C C C + C P
Sbjct: 519 PFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQW--------GGLYCDEP 566
Query: 148 PGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSAT 200
+ N + SN + L ++G +
Sbjct: 567 ETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLV 619
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 33.7 bits (76), Expect = 0.056
Identities = 22/132 (16%), Positives = 27/132 (20%), Gaps = 13/132 (9%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
P C C G C D C +A C +
Sbjct: 283 PFRLQCACQHNTCGGSC----DRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDP 338
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNC-SCPPGYTGPSCESNVDEC 162
E N G C TG NC C PG+ +
Sbjct: 339 EVDRREASQNQDNVYQGGGVCLDCQHHTTGI--------NCERCLPGFFRAPDQPLDSPH 390
Query: 163 GSNPCQNNGTCH 174
P + H
Sbjct: 391 VCRPAAAHHHHH 402
Score = 30.2 bits (67), Expect = 0.85
Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 20/119 (16%)
Query: 125 CSCHPGFTGNCIDGIAA---YNCSCPPGYTGPSCES-----NVDECGSNPCQNNGTCHDL 176
C CH C+C G SC+ N + C
Sbjct: 266 CVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQS- 324
Query: 177 LNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
C H + + + ++ + + Q GGVC C TG NC+
Sbjct: 325 ---CNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVC--------LDCQHHTTGINCE 372
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 33.7 bits (76), Expect = 0.064
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 41 FAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNG-GSCIDGIAAYNCSCPPGYTGPSCE 99
V ++ C C CQ + S+ C+NG G+ G+ C C PG+ G CE
Sbjct: 425 LIVQVTFDCDC-------ACQAQAEPN-SHRCNNGNGTFECGV----CRCGPGWLGSQCE 472
Score = 30.3 bits (67), Expect = 0.70
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 116 CHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
C C+ G G G+ C C PG+ G CE
Sbjct: 437 CQAQAEPNSHRCNNGN-GTFECGV----CRCGPGWLGSQCE 472
Score = 29.5 bits (65), Expect = 1.4
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 142 YNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQ 197
++C C C++ + NGT G VC C P GW GS C+
Sbjct: 431 FDCDCA-------CQAQAEPNSHRCNNGNGTFEC---G-VCRCGP---GWLGSQCE 472
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 30.3 bits (68), Expect = 0.074
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 72 CHNGGSC----IDGIAAYNCSCPPGYTGPSCES 100
C N C I + Y+C C G+ G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 25.7 bits (56), Expect = 3.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 246 CLNEALC----LEEEEEQVCYCVPDYHGNRCQYQYDE 278
CLN+A C + + C C + G RC+Y+ +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52
Score = 24.9 bits (54), Expect = 7.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 142 YNCSCPPGYTGPSCES 157
Y+C C G+ G CE
Sbjct: 33 YSCECAIGFMGQRCEY 48
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 33.3 bits (75), Expect = 0.078
Identities = 35/228 (15%), Positives = 51/228 (22%), Gaps = 23/228 (10%)
Query: 59 HCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHD 118
+ N + G G A +CP C
Sbjct: 139 SVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKS 198
Query: 119 LLNGFVCSC-HPGFTGNCIDGIAAYNC-SCPPGYTGPSCESNVDECGSNPCQNNGTCHDL 176
C H GNC C +C Y C V+ C
Sbjct: 199 HGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRC---VETCPPPYYHFQDWRC-- 253
Query: 177 LNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
S CQ ++C++S Q V + C G+T + ++
Sbjct: 254 --------------VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL 299
Query: 237 ELKICENSPCLNEALCLEEEEEQVCYCVPDYHGNRCQYQYDECQITPR 284
C L E E+ + C I R
Sbjct: 300 LCTPCLGPCPKVCHLL--EGEKTIDSVTSAQELRGCTVINGSLIINIR 345
Score = 29.1 bits (64), Expect = 1.9
Identities = 26/215 (12%), Positives = 49/215 (22%), Gaps = 17/215 (7%)
Query: 44 PSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVD 103
+ G + C
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 104 ECGSNPCQNNG-----TCHDLLNGFVC--SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE 156
EC N Q + C + C +C P + D C + C+
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQ-DWRCVNFSFCQDLH--HKCK 267
Query: 157 SNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
++ + +N C + C G+T + +L + C
Sbjct: 268 NSRRQGCHQYVIHNNKC-------IPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKT 320
Query: 217 LHAAYTCACLFGFTGRNCDIELKICENSPCLNEAL 251
+ + + L G T N + + I + E
Sbjct: 321 IDSVTSAQELRGCTVINGSLIINIRGGNNLAAELE 355
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 33.0 bits (75), Expect = 0.089
Identities = 13/101 (12%), Positives = 19/101 (18%), Gaps = 20/101 (19%)
Query: 98 CESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
S C C +G C + P
Sbjct: 332 VTSGALLCSQALCSGHGRCVRRTSHPKALLL-----------------LNPASFSIQLTP 374
Query: 158 NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQS 198
+ + F C C+P GW C+
Sbjct: 375 GGGPLSLRGALSLEDQAQMAVEFKCRCYP---GWQAPWCER 412
Score = 31.5 bits (71), Expect = 0.33
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 2/82 (2%)
Query: 196 CQSATNECESSPCQNGGVCV--DLHAAYTCACLFGFTGRNCDIELKICENSPCLNEALCL 253
S C + C G CV H L+
Sbjct: 332 VTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQA 391
Query: 254 EEEEEQVCYCVPDYHGNRCQYQ 275
+ E C C P + C+ +
Sbjct: 392 QMAVEFKCRCYPGWQAPWCERK 413
Score = 30.7 bits (69), Expect = 0.50
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 2/80 (2%)
Query: 58 VHCQTNWDECWSNPCHNGGSCI--DGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGT 115
++ + C C G C+ P +
Sbjct: 330 LNVTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLED 389
Query: 116 CHDLLNGFVCSCHPGFTGNC 135
+ F C C+PG+
Sbjct: 390 QAQMAVEFKCRCYPGWQAPW 409
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 32.7 bits (73), Expect = 0.13
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 69 SNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCS-- 126
+ C G CI G+ C C GYT + + + + +
Sbjct: 195 PSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGG 250
Query: 127 CHPGFTGNCIDGIAAYNCSCPP 148
G DG + Y
Sbjct: 251 QVGTGCGTLNDGRSLYFNGLGK 272
Score = 29.6 bits (65), Expect = 1.3
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 4/80 (5%)
Query: 104 ECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECG 163
E S + C + G+CI G+ C C GYT +
Sbjct: 173 ESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPN 228
Query: 164 SNPCQNNGTCHDLLNGFVCS 183
+ + + +
Sbjct: 229 HSEMFDRFEGKLSPLWYKIT 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 32.3 bits (73), Expect = 0.15
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 17/60 (28%)
Query: 106 GSNPCQ----NNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYT----GPSCES 157
G N C+ +NG C L C P + C+CP G SC +
Sbjct: 266 GVNWCERTTLSNGGCQYL-------CLP--APQINPHSPKFTCACPDGMLLARDMRSCLT 316
Score = 29.6 bits (66), Expect = 0.99
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 13/64 (20%)
Query: 50 YCIDGYTGVHCQTNWDECWSNPCHNGG---------SCIDGIAAYNCSCPPGYT----GP 96
+ + + + C NGG + C+CP G
Sbjct: 253 EDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMR 312
Query: 97 SCES 100
SC +
Sbjct: 313 SCLT 316
Score = 29.6 bits (66), Expect = 0.99
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 191 WTGSLCQSATNECESSPCQNGG---VCV------DLHAAYTCACLFGFT----GRNC 234
+ N CE + NGG +C+ +TCAC G R+C
Sbjct: 258 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 26.6 bits (58), Expect = 9.6
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 14/41 (34%)
Query: 163 GSNPCQ----NNGTCHDL----------LNGFVCSCHPGFT 189
G N C+ +NG C L F C+C G
Sbjct: 266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.8 bits (71), Expect = 0.26
Identities = 33/188 (17%), Positives = 50/188 (26%), Gaps = 36/188 (19%)
Query: 59 HCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESN-VDECGSNPCQNNGTCH 117
C + + I+G C +T C+ C S+ C G C
Sbjct: 154 ECGDICPGTAKGKTNCPATVINGQFVERC-----WTHSHCQKVCPTICKSHGCTAEGLC- 207
Query: 118 DLLNGFVCSCHPGFTGNCIDGIAAYNC-SCPPGYTGPSCESNVDECGSNPCQNNGTCHDL 176
CH GNC C +C Y C V+ C
Sbjct: 208 ---------CHSECLGNCSQPDDPTKCVACRNFYLDGRC---VETCPPPYYHFQDWRC-- 253
Query: 177 LNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCDI 236
S CQ ++C++S Q V + C G+T + ++
Sbjct: 254 --------------VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL 299
Query: 237 ELKICENS 244
C
Sbjct: 300 LCTPCLGP 307
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 31.3 bits (70), Expect = 0.31
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 16/111 (14%)
Query: 125 CSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSC 184
C C+ + + C+C G CE + P + T C C
Sbjct: 255 CKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWR-RATAESASECLPCDC 313
Query: 185 HPGFTGWTGSLCQSATNECESSPCQNGGVCVDLHAAYTCACLFGFTGRNCD 235
+ G + + +GG C C G C+
Sbjct: 314 N-------GRSQECYFDPELYRSTGHGGHC--------TNCRDNTDGAKCE 349
Score = 30.5 bits (68), Expect = 0.55
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 15/115 (13%)
Query: 72 CHNGGSCIDGIAAYNCSCPPGYTGPSCES------NVDECGSNPCQNNGTCHDLLNGFVC 125
H + C+C G CE + + + NG
Sbjct: 259 GHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQ 318
Query: 126 SCHPGFTGNCIDGIAAYNCSCPPGYTGPSCE---------SNVDECGSNPCQNNG 171
C+ G + +C G CE N + C ++
Sbjct: 319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHH 373
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 31.0 bits (69), Expect = 0.47
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 49 CYCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSN 108
C +G C E + + + ++ +T P+C+ ++C +N
Sbjct: 752 CQLGQKQSGSECICMSPEE------DCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNN 805
Query: 109 PCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQ 168
+ +G T + +C Y C ++ +C C
Sbjct: 806 QQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKC---VCL 862
Query: 169 NNGTCHDLLNGFVCSCHPG-FTGWTGSLCQSATNEC 203
C N C + T ++C+ T C
Sbjct: 863 LPPQCFKGGNQLYCVKMGSSTSEKTLNICEVGTIRC 898
Score = 27.9 bits (61), Expect = 4.2
Identities = 21/170 (12%), Positives = 42/170 (24%), Gaps = 33/170 (19%)
Query: 50 YCIDGYTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP 109
+ + G + CQ N + +C +G C E
Sbjct: 715 FVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEED--- 771
Query: 110 CQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP--- 166
+ + + ++ +T P+C+ ++C +N
Sbjct: 772 ----------------------CSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLH 809
Query: 167 CQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVCVD 216
+ G+C D G S + C C + C
Sbjct: 810 FLHIGSCQD-----GRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSA 854
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 30.3 bits (68), Expect = 0.48
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 54 GYTGVHCQTNWDECWSNPCHNGG---SCIDGIAAYNCSCPPGYTGPSCESN 101
G+ + + DEC P C + + + CSC GY +
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 164
Score = 28.7 bits (64), Expect = 1.6
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 91 PGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGY 150
G+ ++DEC P + H +C + + + CSC GY
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDH----------------HCHNHLGGFYCSCRAGY 156
Query: 151 TGPSCESN 158
+
Sbjct: 157 VLHRNKRT 164
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 148 PGYTGPSCESNVDECGSNPCQNNG---TCHDLLNGFVCSCHPGFT 189
G+ ++DEC P + CH+ L GF CSC G+
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 31.0 bits (70), Expect = 0.50
Identities = 19/150 (12%), Positives = 30/150 (20%), Gaps = 15/150 (10%)
Query: 65 DECWSNPCHNG----GSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNP--CQNNGTCHD 118
EC C C + C + + + NG
Sbjct: 161 TECLHVHCRGLETSLAECT--FTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKY-- 216
Query: 119 LLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLN 178
+ C C D C G G C+S V C C +
Sbjct: 217 ISQMKACDGIND----CGDQSDELCCKACQG-KGFHCKSGVCIPSQYQCNGEVDCITGED 271
Query: 179 GFVCSCHPGFTGWTGSLCQSATNECESSPC 208
C+ + + +
Sbjct: 272 EVGCAGFASVAQEETEILTADMDAERRRIK 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.9 bits (69), Expect = 0.57
Identities = 9/71 (12%), Positives = 13/71 (18%), Gaps = 5/71 (7%)
Query: 40 IFAVPSSYTCYCIDGYTGVHCQTNWDECWSNPCHNGGSCI-DGIAAYNCSCPPGYT---- 94
+ + C + C+ G CSCP
Sbjct: 555 KVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQD 614
Query: 95 GPSCESNVDEC 105
SC
Sbjct: 615 ELSCGGTKHHH 625
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.58
Identities = 52/312 (16%), Positives = 87/312 (27%), Gaps = 89/312 (28%)
Query: 2 LLYHLTAMYLTVD--LTDGPFQPYLW----SGLPDSDWLALIIPIFAVP----SSYTCYC 51
L L L + T G W S PD D+L IPI + P Y
Sbjct: 194 TLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLS-IPI-SCPLIGVIQLAHYV 250
Query: 52 IDGYTGVHCQT-NWDECWSNPCHNGGS-CIDGI-AAYNCSCPPGYTGPSCESNVDEC--- 105
V + + G + G+ A + + S +V +
Sbjct: 251 ------VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--SWESFFVSVRKAITV 302
Query: 106 ----GSNPCQNNGTCHDLLNGFVCSCHPGFTGNCID---GIAAY--NCSCPPGYTGPSCE 156
G C++ S P + ++ G+ + + S T +
Sbjct: 303 LFFIGVR-------CYEAYP--NTSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQ 350
Query: 157 SNVDECGSNPCQNNGTCHDLLNG---FVCSCHPGFTGWTGSLCQSATNECESSPCQNGGV 213
V++ S+ L+NG V S P SL G+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP------QSLY---------------GL 389
Query: 214 CVDLHAAYTCACL----FGFTGRNCDIE---LKICE--NSPCLNEA---LCLEEEEEQVC 261
+ L A + L F+ R L + +S L A + + + V
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 262 YC-----VPDYH 268
+ +P Y
Sbjct: 450 FNAKDIQIPVYD 461
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 81 GIAAYNCSCPPGYTGPSCESNVDECGSNPCQ-NNGTCHDLLNGFVCSCHPGFTGNCIDGI 139
G+ P G SN NP + + L +V TG ++ I
Sbjct: 1790 GMTMQVA-VPRDELG---RSNYGMIAINPGRVAASFSQEALQ-YVVERVGKRTGWLVE-I 1843
Query: 140 AAYNCSCPPG 149
YN
Sbjct: 1844 VNYNV---EN 1850
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 29.8 bits (66), Expect = 0.82
Identities = 18/136 (13%), Positives = 34/136 (25%), Gaps = 15/136 (11%)
Query: 75 GGSCIDGI---AAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGF 131
G +C+ A + C +C+ + +C C C
Sbjct: 1 GATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSP-----LPCWDYI 55
Query: 132 TGNCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGW 191
C + C + ++ + + C+ N C GW
Sbjct: 56 NNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQGCNSEEC-------GW 108
Query: 192 TGSLCQSATNECESSP 207
G C + E +
Sbjct: 109 DGLDCAADQPENLAEG 124
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 27.5 bits (60), Expect = 0.92
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 105 CGSNPC--QNNGTCHDLLNGFVCSCHPGF 131
C SNPC + GTC + +G++C C+ G+
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Score = 27.5 bits (60), Expect = 0.92
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 162 CGSNPC--QNNGTCHDLLNGFVCSCHPGF 188
C SNPC + GTC + +G++C C+ G+
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Score = 25.2 bits (54), Expect = 6.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 67 CWSNPC--HNGGSCIDGIAAYNCSCPPGYTGP 96
C SNPC G+C + + Y C C GY
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGYRIS 45
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.8 bits (66), Expect = 1.2
Identities = 30/207 (14%), Positives = 53/207 (25%), Gaps = 10/207 (4%)
Query: 55 YTGVHCQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNG 114
G + C + T + CG C N
Sbjct: 139 IVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENN 198
Query: 115 TCHDLLNGFVCSCHPGFTG--NCIDGIAAYNC--SCPPGY--TGPSCESNVDECGS--NP 166
C CS T C A C +CPP + D C + +
Sbjct: 199 ECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSA 258
Query: 167 CQNNGTCHDLLNGF-VCSCHPGFTG-WTGSLCQSATNECESSPCQNGGVCVDLHAAYTCA 224
++ + +G + C GF + S+ C+ + + +
Sbjct: 259 ESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQ 318
Query: 225 CLFGFTGRNCDIELKICENSPCLNEAL 251
L G T ++ + I + +E
Sbjct: 319 MLQGCTIFKGNLLINIRRGNNIASELE 345
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 29.1 bits (64), Expect = 1.6
Identities = 10/54 (18%), Positives = 12/54 (22%), Gaps = 4/54 (7%)
Query: 165 NPCQNNGT----CHDLLNGFVCSCHPGFTGWTGSLCQSATNECESSPCQNGGVC 214
N C G C + F C C G+ A N
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Score = 28.7 bits (63), Expect = 2.3
Identities = 16/100 (16%), Positives = 23/100 (23%), Gaps = 19/100 (19%)
Query: 108 NPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGY----TGPSCESNVDECG 163
N C G C C + A+ C C GY SC++ E
Sbjct: 2 NECAEEGYCSQG---------------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPV 46
Query: 164 SNPCQNNGTCHDLLNGFVCSCHPGFTGWTGSLCQSATNEC 203
L + + +L E
Sbjct: 47 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRREL 86
Score = 27.1 bits (59), Expect = 7.1
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 70 NPCHNGGS----CIDGIAAYNCSCPPGY----TGPSCESNVDECGSNPCQNNGTCHDLLN 121
N C G C + A+ C C GY SC++ E L +
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 61
Query: 122 GFVCSCHPGFTGN 134
+ N
Sbjct: 62 RSEYTLLLNNLEN 74
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 28.9 bits (64), Expect = 1.7
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 67 CWSNPCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQ 111
PC + C C T C++ E C+
Sbjct: 168 SPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCR 212
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.4 bits (65), Expect = 1.7
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 145 SCPPGYTGPSCESNVDECGSNPCQNNGTCHDL----LNGFVCSCHPGFT 189
P + + + + NG C L G C+C GF
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Score = 29.0 bits (64), Expect = 2.2
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 19/72 (26%)
Query: 88 SCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCP 147
P + + + + NG C L C G C+CP
Sbjct: 560 QLPDLMGLKATNVHRVIGSNPCAEENGGCSHL-------CLYRPQG--------LRCACP 604
Query: 148 PGYT----GPSC 155
G+ +C
Sbjct: 605 IGFELISDMKTC 616
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 92 GYTGPSCESNVDECGSNPCQNNG-TCHDLLNGFVCSCHPGFT 132
G+ ++++EC C++ + G+ CSC P +
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 149 GYTGPSCESNVDECGSNPCQNNG-TCHDLLNGFVCSCHPGFT 189
G+ ++++EC C++ + G+ CSC P +
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
Score = 28.2 bits (63), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 54 GYTGVHCQTNWDECWSNPCHN-GGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSN 108
G+ + T+ +EC C + I Y CSCPP Y ++ CG N
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFL---HDDMKNCGVN 159
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 27.0 bits (59), Expect = 2.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 253 LEEEEEQVCYCVPDYHGNRCQY 274
++E C C P YHG RC
Sbjct: 56 VKELRAPSCICHPGYHGERCHG 77
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.0 bits (59), Expect = 3.1
Identities = 15/86 (17%), Positives = 20/86 (23%), Gaps = 11/86 (12%)
Query: 65 DECWSNPCHNGGSC-IDGIAAYNCSCPPGYTG----------PSCESNVDECGSNPCQNN 113
+C C C C C Y P+C N C ++
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 114 GTCHDLLNGFVCSCHPGFTGNCIDGI 139
C C + DGI
Sbjct: 65 EDSGSNGKKITCECTKPDSYPLFDGI 90
Score = 26.3 bits (57), Expect = 5.1
Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 10/92 (10%)
Query: 103 DECGSNPCQNNGTCHDLLNG-FVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCESNVDE 161
+C C N C L+ C C + C P+C N
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQE--------GDKCVEN-PNPTCNENNGG 55
Query: 162 CGSNPCQNNGTCHDLLNGFVCSCHPGFTGWTG 193
C ++ C C +
Sbjct: 56 CDADAKCTEEDSGSNGKKITCECTKPDSYPLF 87
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 25.5 bits (56), Expect = 3.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 253 LEEEEEQVCYCVPDYHGNRCQY 274
+ E+ C C Y G RC+
Sbjct: 24 VVAEQTPSCVCDEGYIGARCER 45
Score = 24.4 bits (53), Expect = 9.3
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 127 CHPGFTGNCIDG-------IAAYNCSCPPGYTGPSCE 156
C + CI G +C C GY G CE
Sbjct: 8 CPKQYKHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 27.7 bits (62), Expect = 4.4
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 126 SCHPGFTGNC----IDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCH 174
CHP T C + G +Y CSC GY C +
Sbjct: 4 ECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 56
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 27.8 bits (62), Expect = 4.6
Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 19/122 (15%)
Query: 71 PCHNGGSCIDGIAAYNCSCPPGYTGPSCESNVDECGSNPCQNNGTCHDLLNGFVCSCHPG 130
D +C GY + V + CQ++GT H + C
Sbjct: 17 NLQPQYQFRDYF---IATCKQGYQ-LIEGNQVLHSFTAVCQDDGTWHRAM--PRCKI--- 67
Query: 131 FTGNCIDGIAAYNCSCPPGYTGPSCESNVDECGS---NPCQNNGTCHDLLNGFVCSCHPG 187
+C + P G + V+ + C G S
Sbjct: 68 --KDC-----GQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGV 120
Query: 188 FT 189
+T
Sbjct: 121 YT 122
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 25.2 bits (55), Expect = 5.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 253 LEEEEEQVCYCVPDYHGNRCQY 274
L +E++ C C Y G RC++
Sbjct: 24 LVQEDKPACVCHSGYVGARCEH 45
Score = 24.8 bits (54), Expect = 7.6
Identities = 11/37 (29%), Positives = 11/37 (29%), Gaps = 7/37 (18%)
Query: 127 CHPGFTGNCIDG-------IAAYNCSCPPGYTGPSCE 156
C T C G C C GY G CE
Sbjct: 8 CPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCE 44
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 26.2 bits (57), Expect = 5.1
Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Query: 65 DECWSNPCHNGGSCI-DGIAAYNCSCPPGYT--GPSCESNVDECGSNP--CQNNGTC-HD 118
+C +C C G+ G C C N C C D
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 119 LLNGFVCSCHPGFTGNCIDGI 139
C C + +G+
Sbjct: 71 DKKEVECKCTKEGSEPLFEGV 91
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 27.3 bits (60), Expect = 6.3
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 60 CQTNWDECWSNPCHNGGSCIDGIAAYNCSCPPGYT----GPSCESNVDECG 106
TN + C + Y C+CP G G +C+ +
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG-NSHH 314
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 27.2 bits (60), Expect = 6.6
Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 25/135 (18%)
Query: 50 YCIDGYTGVHCQTNWDECWSNPCHNGGSCI-DGIAAYNCSCPPGYTGPSCES-------- 100
Q + + CH C+ + + +C C G+ G
Sbjct: 7 VPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDG 66
Query: 101 ---NVDECGSNPCQNNGTCHDLLNGFVCSCHPGFTGNCIDGIAAYNCSCPPGYTGPSCES 157
C C+ + V + G DGI +C P G +
Sbjct: 67 FPDEKLRCPERQCRKDNC--------VTVPNSGQEDVDRDGI---GDACDPDADGDGVPN 115
Query: 158 NVDEC--GSNPCQNN 170
D C NP Q N
Sbjct: 116 EKDNCPLVRNPDQRN 130
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 24.4 bits (53), Expect = 8.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 253 LEEEEEQVCYCVPDYHGNRCQY 274
L + + C C Y G RC++
Sbjct: 22 LVDMSQNYCRCEVGYTGVRCEH 43
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 24.7 bits (54), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 112 NNG----TCHDLLNGFVCSCHPGFT 132
+NG CH+ N VCSC G+T
Sbjct: 7 DNGDCDQFCHEEQNSVVCSCARGYT 31
Score = 24.7 bits (54), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 169 NNG----TCHDLLNGFVCSCHPGFT 189
+NG CH+ N VCSC G+T
Sbjct: 7 DNGDCDQFCHEEQNSVVCSCARGYT 31
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 24.7 bits (54), Expect = 8.6
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 159 VDECGSNPCQNNG--------TCHDLLNGFVCSCHPGFT 189
+DEC S CH+ + G+ CSC PG+
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like
domain, repeat; HET: ABA; NMR {Mus musculus} SCOP:
g.3.11.1
Length = 45
Score = 24.3 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 67 CWSNPCHNGGSC--IDGIAAYNCSCPPGYTGPSCE 99
+ C NGG I+ + +Y C+C GY+G C+
Sbjct: 6 SYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.511
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,733,752
Number of extensions: 302999
Number of successful extensions: 3409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 787
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)