BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7018
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 210 ASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDF 269
+S +FTT CEPD PNPP++ +T+ SL L+W A DNG+ + +++LE D+G G+F
Sbjct: 5 SSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEF 64
Query: 270 KEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSV 310
+ K F ++KL+P+ +FRL+A N +G S + V
Sbjct: 65 CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 105
>pdb|1WK0|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Derived
From Human Kiaa0970 Protein
Length = 137
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%)
Query: 164 VSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+S G+DGKYKS+Y GE + + DLKP DY VQ I G SE +FTT CEP
Sbjct: 64 ISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Query: 224 DQPNPPKL 231
D PNPP++
Sbjct: 124 DIPNPPRI 131
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 216 FTTPPCEPDQPNPPKLVTKTRT-SLALKWNAAVDNG-AHVMHYILESDQGNATGDFKEIS 273
FTT P +P P P + K + S + W+ DNG A + Y++E +G+ ++ I
Sbjct: 11 FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY 70
Query: 274 KSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKG 325
+ +L P +R R+ ++ G+SA + S+ V TP V G
Sbjct: 71 SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLL------VQTPAVSG 116
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
PDQ PP++ ++ T + W + NG V Y LE G G + ++ +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLE--WGGVEGSMQICYCGPGLSYEI 65
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADATSVA 311
L+P+T + R+ A++ G + VA
Sbjct: 66 KGLSPATTYYCRVQALSVVGAGPFSEVVA 94
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 220 PCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEIS-KSKNK 278
P P+ P L T R ++ L W D + ++ YILE + NA S K
Sbjct: 18 PHAPEHPVA-TLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKAT 76
Query: 279 NFTLSKLTPSTCFRFRLAAVNQHGK 303
+ T+ L P+ ++FRL AVN GK
Sbjct: 77 SVTVKGLVPARSYQFRLCAVNDVGK 101
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 63 EPANHGSPILHYVLETSDPAQP------SITCDTTSYQLTGLSPHTTYK-SVCQVYLIS- 114
+P + SP++ Y+LE S+ P S+ TS + GL P +Y+ +C V +
Sbjct: 42 KPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGK 101
Query: 115 ---DKHTQKVDL 123
K T++V L
Sbjct: 102 GQFSKDTERVSL 113
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 226 PNPP--KLVTKT-RTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
P PP +VT+T TS+ L W++ N V +Y ++ G F+E+ +++
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSI 65
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADATSV 310
L+P + + FR+ AVN G+ + +V
Sbjct: 66 GGLSPFSEYAFRVLAVNSIGRGPPSEAV 93
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALK 242
S ++ L+ G Y V E +G+ +E P P L+ TR S++L
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLS 122
Query: 243 WNAAV-DNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQH 301
W D G+ ++ YI+E Q + + + K T++ L + FR++A N+
Sbjct: 123 WEKPEHDGGSRILGYIVEM-QTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEK 181
Query: 302 GKS 304
G S
Sbjct: 182 GIS 184
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 224 DQPNPP---KLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKN 279
D P PP K+ T+TS+ L W+ +D G+ + +YI+E + + +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 280 FTLSKLTPSTCFRFRLAAVNQHG 302
+ + +L + FR+ A N++G
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYG 86
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
PD P K+ +R S+ L W A D G+ + +YI+E A + + +++ +T
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE-RWLRVGQARETRYT 257
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+ L T ++FR+ A N+ G S
Sbjct: 258 VINLFGKTSYQFRVIAENKFGLS 280
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 222 EPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNF 280
EP+ P P + ++ L W A+D G+ V +Y +E + G + +KS+
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMG-GSWSPCAKSRYTYT 67
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKS 304
T+ L + FR+ A N+HG+S
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHGQS 91
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 224 DQPNPP---KLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNATGDFKEISKSKNKN 279
D PNPP +L + S+ L W DN + + +I+E D + G + ++
Sbjct: 15 DVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQ 74
Query: 280 FTLS-KLTPSTCFRFRLAAVNQHGKSADATSVAEWLS 315
T L+P + FR+ AVN GKS + + ++L+
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 81 PAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQK---VD----LTFESDQLYLS 133
P Q +I D SY +TGL P T YK +Y ++D +D + S+ +L+
Sbjct: 155 PIQRTIKPDVRSYTITGLQPGTDYK--IYLYTLNDNARSSPVVIDASTAIDAPSNLRFLA 212
Query: 134 GLPNS---EWPSLRTIILTLYFRTAQVPGVPPY-VSDKGRDGKYKSIYNGEAQSCRIQDL 189
PNS W R I T Y + PG PP V + R G ++ G L
Sbjct: 213 TTPNSLLVSWQPPRARI-TGYIIKYEKPGSPPREVVPRPRPGVTEATITG---------L 262
Query: 190 KPGTDYAVCV 199
+PGT+Y + V
Sbjct: 263 EPGTEYTIYV 272
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 81 PAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQK---VD----LTFESDQLYLS 133
P Q +I D SY +TGL P T YK +Y ++D +D + S+ +L+
Sbjct: 136 PIQRTIKPDVRSYTITGLQPGTDYK--IYLYTLNDNARSSPVVIDASTAIDAPSNLRFLA 193
Query: 134 GLPNS---EWPSLRTIILTLYFRTAQVPGVPPY-VSDKGRDGKYKSIYNGEAQSCRIQDL 189
PNS W R I T Y + PG PP V + R G ++ G L
Sbjct: 194 TTPNSLLVSWQPPRARI-TGYIIKYEKPGSPPREVVPRPRPGVTEATITG---------L 243
Query: 190 KPGTDYAVCV 199
+PGT+Y + V
Sbjct: 244 EPGTEYTIYV 253
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR--TSLA 240
S + DL+P +Y V+ + G+ + + F T +Q PPK+ + R TSL+
Sbjct: 398 SVTVSDLEPHMNYTFTVEAR-NGVSGLVTSRS-FRTASVSINQTEPPKVRLEGRSTTSLS 455
Query: 241 LKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQ 300
+ W+ + V Y + + + + + +++ + TL L P T + ++ A+ Q
Sbjct: 456 VSWSIPPPQQSRVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDLAPDTTYLVQVQALTQ 514
Query: 301 HGKSADATSVAEWLSYSVYTPEVKGS 326
G+ A + V E + +PE G+
Sbjct: 515 EGQGA-GSKVHE---FQTLSPEGSGN 536
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR--TSLA 240
S + DL+P +Y V+ + G+ + + F T +Q PPK+ + R TSL+
Sbjct: 401 SVTVSDLEPHMNYTFTVEAR-NGVSGLVTSRS-FRTASVSINQTEPPKVRLEGRSTTSLS 458
Query: 241 LKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQ 300
+ W+ + V Y + + + + + +++ + TL L P T + ++ A+ Q
Sbjct: 459 VSWSIPPPQQSRVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDLAPDTTYLVQVQALTQ 517
Query: 301 HGKSA 305
G+ A
Sbjct: 518 EGQGA 522
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR--TSLA 240
S + DL+P +Y V+ + G+ + + F T +Q PPK+ + R TSL+
Sbjct: 398 SVTVSDLEPHXNYTFTVEAR-NGVSGLVTSRS-FRTASVSINQTEPPKVRLEGRSTTSLS 455
Query: 241 LKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQ 300
+ W+ + V Y + + + + + +++ + TL L P T + ++ A+ Q
Sbjct: 456 VSWSIPPPQQSRVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDLAPDTTYLVQVQALTQ 514
Query: 301 HGKSADATSVAEWLSYSVYTPEVKGS 326
G+ A + V E + +PE G+
Sbjct: 515 EGQGA-GSKVHE---FQTLSPEGSGN 536
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 226 PNPPKLVTKTRTSLALKWN----AAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P L T L+L+W+ D G + YILE ++ + FK ++ +T
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEG---ISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+ L ST ++F++ A N GKS
Sbjct: 68 VKNLRRSTKYKFKVIAYNSEGKS 90
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKS-KNKNFT 281
P P+ P++ T+ S+ L W YI+E+ + + ++ ++ K +T
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYT 75
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+ L P+T + F + A+N G S
Sbjct: 76 VRGLRPNTIYLFMVRAINPQGLS 98
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 224 DQPNPPKLVTKTRT---SLALKWNAAVDNG-AHVMHYILESDQGNATGDFKEISKSKNKN 279
D+P PP++V ++AL W D+G A + Y ++ + F I +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAE 312
T+++L + FR+ + N G S DAT E
Sbjct: 76 ATITELVIGNEYYFRVFSENMCGLSEDATMTKE 108
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 89/234 (38%), Gaps = 25/234 (10%)
Query: 80 DPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVYLISD----KHTQKVDLTFESDQLYLSG 134
D A+ SI+ + LT L P T Y SV VY + + QK L + +
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 197
Query: 135 LPNS---EWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKP 191
NS W + R I R P + S + R+ + N S + +L P
Sbjct: 198 TANSFTVHWIAPRATITGYRIRHH-----PEHFSGRPREDRVPHSRN----SITLTNLTP 248
Query: 192 GTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGA 251
GT+Y V + + G P L D P ++V T TSL + W+A
Sbjct: 249 GTEYVVSIVA----LNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP---AV 301
Query: 252 HVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
V +Y + + +E + +K+ T+S L P + + AV G S
Sbjct: 302 TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 355
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 224 DQPNPPKLVTKTRTSLALKW-NAAVDNGAHVMHYILES-DQGNATGDFKEISKSKNKNFT 281
D P P + TR ++ LKW G + YI+E D N S FT
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 282 LSKLTPSTCFRFRLAAVNQHG 302
+S LT + FR+ A N G
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAG 92
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 147 ILTLYFRTAQVPGVPPY----VSDKGRDGK-YKSIYNGEAQSCRIQDLKPGTDYAVCVQV 201
+LT+ + + P + Y G+ G + + + + SC +L PG +Y V V
Sbjct: 19 VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 78
Query: 202 HLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHY-ILES 260
++ + T+ P D V T +S+ L+W N + ++ Y I
Sbjct: 79 VKDDKESVPISDTIIPEVPQLTDL----SFVDITDSSIGLRWTPL--NSSTIIGYRITVV 132
Query: 261 DQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADAT 308
G F++ S +T++ L P + + + G+SA T
Sbjct: 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT 180
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 145 TIILTLYFRTAQVPGVPPY----VSDKGRDGK-YKSIYNGEAQSCRIQDLKPGTDYAVCV 199
T +LT+ + + P + Y G+ G + + + + SC +L PG +Y V V
Sbjct: 17 TGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSV 76
Query: 200 QVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHY-IL 258
++ + T+ P D V T +S+ L+W N + ++ Y I
Sbjct: 77 YTVKDDKESVPISDTIIPEVPQLTDL----SFVDITDSSIGLRWTPL--NSSTIIGYRIT 130
Query: 259 ESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADAT 308
G F++ S +T++ L P + + + G+SA T
Sbjct: 131 VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT 180
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 186 IQDLKPGTDYAVCVQVHL-----EEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLA 240
++ LKP T YA+ V+ + G S+ T P P P V+ + + +
Sbjct: 553 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQII 612
Query: 241 LKWNAAVDNGAHVMHYIL 258
LKW D ++ HY++
Sbjct: 613 LKWKPPSDPNGNITHYLV 630
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 186 IQDLKPGTDYAVCVQVHL-----EEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLA 240
++ LKP T YA+ V+ + G S+ T P P P V+ + + +
Sbjct: 553 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQII 612
Query: 241 LKWNAAVDNGAHVMHYIL 258
LKW D ++ HY++
Sbjct: 613 LKWKPPSDPNGNITHYLV 630
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 226 PNPPKLVTKTRTS---LALKWN--AAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNF 280
P+ P+ V + S + L W A+ +G ++ + + + +G A + S
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 281 TLSKLTPSTCFRFRLAAVNQHG 302
T+ L P+T + FR+ A N+HG
Sbjct: 78 TIQNLMPATVYIFRVMAQNKHG 99
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 239 LALKW----NAAVDNGAHVM----HYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTC 290
L +KW N +++ +V+ +Y + + +AT ++ ++++ ++ L+ + PS
Sbjct: 177 LEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDAT-HWQTVAQTTDERVQLTDIRPSRW 235
Query: 291 FRFRLAAVNQHG 302
++FR+AAVN HG
Sbjct: 236 YQFRVAAVNVHG 247
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 186 IQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNA 245
+Q L+PG+ Y V + AS T FTT E D P ++ ++T TSL L+W+
Sbjct: 72 VQALRPGSRYEVSISAVRGTNESDASS-TQFTT---EIDAPKNLRVGSRTATSLDLEWDN 127
Query: 246 AVDNGAH--VMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGK 303
+ V++ L +Q + K I + TL+ L P T + ++AV +
Sbjct: 128 SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKT--TLTDLVPGTEYGVGISAVMNSKQ 185
Query: 304 SADAT 308
S AT
Sbjct: 186 SIPAT 190
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 179 GEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTS 238
G + DL PGT+Y V + + I + T E D P + + TS
Sbjct: 157 GPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNART----ELDSPRDLMVTASSETS 212
Query: 239 LALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNK-NFTLSKLTPSTCFRFRLAA 297
++L W A + HY + ++G E++ +++ ++TL+ L P + + A
Sbjct: 213 ISLIWTKA---SGPIDHYRITFTP--SSGISSEVTVPRDRTSYTLTDLEPGAEYIISITA 267
Query: 298 VNQHGKSADAT 308
+S ++T
Sbjct: 268 ERGRQQSLEST 278
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Query: 182 QSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLAL 241
S + +L PGT+Y V + + G P L D P +++ T TSL +
Sbjct: 55 NSITLTNLNPGTEYVVSIIA----VNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLI 110
Query: 242 KWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQ 300
W V +Y + + +E + +K+ T++ + P + L AV
Sbjct: 111 SWEPP---AVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTG 167
Query: 301 HGKS 304
G S
Sbjct: 168 RGDS 171
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDF----KEISKSKNK 278
P+ P+ P + T + TS+ + W + G + + +E + GD+ I S+
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR-L 76
Query: 279 NFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ ++ L ++FR+ A+N G+S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGES 102
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 237 TSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLA 296
TS+ + W V + +Y L + T +++ S + ++T++ L T + FR+
Sbjct: 32 TSITVTWETPVSGNGEIQNYKLYYME-KGTDKEQDVDVSSH-SYTINGLKKYTEYSFRVV 89
Query: 297 AVNQHGKSADATSVA 311
A N+HG VA
Sbjct: 90 AYNKHGPGVSTPDVA 104
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN--F 280
P P K++ ++T+ + +N +G +H+ + D + +I +S
Sbjct: 18 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH-YQVDVKEVASEIWKIVRSHGVQTMV 76
Query: 281 TLSKLTPSTCFRFRLAAVNQHGK 303
L+ L P+T + R+AAVN G+
Sbjct: 77 VLNNLEPNTTYEIRVAAVNGKGQ 99
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 223 PDQPNPPKLVTKTRT---SLALKWNAAVDNGAHVMHYILESDQGNATGDFKE---ISKSK 276
P+ P PP + + S+ L++ D + +++E+ G G+ +E I +
Sbjct: 15 PELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVG-VVGEGEEWLLIHQLS 73
Query: 277 N----KNFTLSKLTPSTCFRFRLAAVNQHGKS 304
N ++ + L P TC+ FR+ VN G S
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTS 105
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN--F 280
P P K++ ++T+ + +N +G +H+ + D + +I +S
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH-YQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 281 TLSKLTPSTCFRFRLAAVNQHGK 303
L+ L P+T + R+AAVN G+
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQ 277
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN--F 280
P P K++ ++T+ + +N +G +H+ + D + +I +S
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHH-YQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 281 TLSKLTPSTCFRFRLAAVNQHGK 303
L+ L P+T + R+AAVN G+
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQ 277
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 226 PNPPKLVTKTRTSLALKWNAAVDNGAHV----MHYILESDQGN--ATGDFKEISKSK--- 276
P PP + + S+ L+W ++G + + Y + + N T D K K
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 64
Query: 277 --NKNFTLS--KLTPSTCFRFRLAAVNQHGKSADATSVAEW 313
K+FT S L P +RFR+ AV + + ++ + A++
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF 105
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 226 PNPPKLVTKTRTSLALKWNAAVDNGAHV----MHYILESDQGN--ATGDFKEISKSK--- 276
P PP + + S+ L+W ++G + + Y + + N T D K K
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 64
Query: 277 --NKNFTLS--KLTPSTCFRFRLAAVNQHGKSADATSVAEW 313
K+FT S L P +RFR+ AV + + ++ + A++
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF 105
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 226 PNPPKLVTKTRTSLALKWNAAVDNGAHVMHY------ILESDQGNATGDFKEISKSK--- 276
P PP + + S+ L+W ++G ++ + + + T D K K
Sbjct: 6 PTPPNVTRLSDESVXLRWXVPRNDGLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKWNS 65
Query: 277 --NKNFTLS--KLTPSTCFRFRLAAVNQHGKSADATSVAE 312
K+FT S L P +RFR+ AV + + ++ + A+
Sbjct: 66 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,273,280
Number of Sequences: 62578
Number of extensions: 404285
Number of successful extensions: 956
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 50
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)